AlfalfaGEDB | Msa1376980

M. sativa cultivar zhongmu-4 / Msa1376980

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031967 GO:0031975 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1376980	KEH40055.1	92.771	332	24	0	1	332	1	332	0.0	639

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1376980	sp\|Q9LDZ5\|PBL21_ARATH	64.310	297	103	2	36	330	63	358	1.38e-136	395

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1376980	A0A072VPI8	92.771	332	24	0	1	332	1	332	0.0	639

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1376980	MtrunA17_Chr1g0153851	92.771	332	24	0	1	332	1	332	0.0	639
Msa1376980	MtrunA17_Chr3g0143961	68.768	349	89	3	1	330	1	348	6.78e-171	479
Msa1376980	MtrunA17_Chr2g0286281	62.000	300	110	3	35	331	73	371	6.26e-132	385
Msa1376980	MtrunA17_Chr7g0237401	61.953	297	109	3	33	326	75	370	6.60e-129	375
Msa1376980	MtrunA17_Chr5g0443691	56.481	324	136	3	10	329	58	380	1.01e-127	371
Msa1376980	MtrunA17_Chr1g0213991	59.333	300	118	3	35	331	81	379	3.36e-127	372
Msa1376980	MtrunA17_Chr7g0251771	57.831	332	133	6	3	331	5	332	6.25e-127	369
Msa1376980	MtrunA17_Chr7g0263521	56.426	319	132	4	12	327	37	351	6.25e-126	365
Msa1376980	MtrunA17_Chr1g0181821	57.667	300	123	3	35	331	58	356	4.53e-123	358
Msa1376980	MtrunA17_Chr2g0327471	55.814	301	129	3	34	331	74	373	1.29e-121	355

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1376980	AT1G20650.1	64.310	297	103	2	36	330	63	358	1.40e-137	395
Msa1376980	AT1G76370.1	61.279	297	112	2	36	330	60	355	7.80e-131	378
Msa1376980	AT5G02800.1	60.000	300	116	3	35	331	57	355	2.94e-130	377
Msa1376980	AT5G18610.1	61.333	300	112	3	35	331	67	365	1.05e-129	380
Msa1376980	AT5G18610.2	61.333	300	112	3	35	331	67	365	1.05e-129	380
Msa1376980	AT5G18610.3	61.333	300	112	3	35	331	67	365	1.05e-129	380
Msa1376980	AT1G07870.1	56.731	312	131	3	23	331	75	385	3.53e-126	368
Msa1376980	AT1G07870.2	56.731	312	131	3	23	331	75	385	3.79e-125	369
Msa1376980	AT5G13160.1	59.000	300	119	3	35	331	70	368	1.12e-124	365
Msa1376980	AT3G07070.1	57.566	304	125	3	28	328	56	358	8.29e-124	362

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Find 73 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGTTAAATCCAAATGG+TGG	0.677206	tig0019847:-20597	Msa1376980:CDS
AAAGCAATAAGGTAGCAACT+AGG	0.625858	tig0019847:-20855	Msa1376980:CDS
AAATGGTGGTCAAGGTTGTC+AGG	0.439444	tig0019847:-20583	Msa1376980:CDS
AAGGAACTGATTGGCGAAGG+TGG	0.589417	tig0019847:-20793	Msa1376980:CDS
AATGCTAAACTGTCCGATTT+TGG	0.246147	tig0019847:-19629	Msa1376980:CDS
AATGGAGGAACAAACACATC+AGG	0.538954	tig0019847:-21171	Msa1376980:intron
AATTATCTTGTTAAGTTAAT+TGG	0.125518	tig0019847:-20516	Msa1376980:CDS
AATTTCACCAATGCGTGGAC+GGG	0.501597	tig0019847:+19145	None:intergenic
ACATGAGTGTTGTCTCCAGT+AGG	0.662879	tig0019847:+19590	None:intergenic
ACCAGAGTGATGGGTACAGA+AGG	0.589641	tig0019847:-19563	Msa1376980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTCATTGTTGGAAAAAGAA+TGG	-	tig0019847:19124-19143	Msa1376980:CDS	30.0%
TTATTGGATCATATTGCAGA+GGG	-	tig0019847:19409-19428	Msa1376980:intron	30.0%
GTTTATGAATACATGCCTAA+GGG	-	tig0019847:19851-19870	Msa1376980:intron	30.0%
TTGATACCTTTCATCTTCAA+TGG	-	tig0019847:20136-20155	Msa1376980:intron	30.0%
AATCATCCATTGAAGATGAA+AGG	+	tig0019847:20145-20164	None:intergenic	30.0%
GTCATTGTCCAATAAAATGT+TGG	+	tig0019847:20661-20680	None:intergenic	30.0%
CTAGATAATAGTAGAAGAAG+AGG	-	tig0019847:20876-20895	Msa1376980:CDS	30.0%
GTTCATTGTTGGAAAAAGAA+TGG	-	tig0019847:19124-19143	Msa1376980:CDS	30.0%
TTATTGGATCATATTGCAGA+GGG	-	tig0019847:19409-19428	Msa1376980:intron	30.0%
GTTTATGAATACATGCCTAA+GGG	-	tig0019847:19851-19870	Msa1376980:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019847	gene	19103	21232	19103	ID=Msa1376980;Name=Msa1376980
tig0019847	mRNA	19103	21232	19103	ID=Msa1376980-mRNA-1;Parent=Msa1376980;Name=Msa1376980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|1\|1\|5\|0\|332
tig0019847	exon	21172	21232	21172	ID=Msa1376980-mRNA-1:exon:5437;Parent=Msa1376980-mRNA-1
tig0019847	exon	20753	20907	20753	ID=Msa1376980-mRNA-1:exon:5436;Parent=Msa1376980-mRNA-1
tig0019847	exon	20439	20631	20439	ID=Msa1376980-mRNA-1:exon:5435;Parent=Msa1376980-mRNA-1
tig0019847	exon	19415	19806	19415	ID=Msa1376980-mRNA-1:exon:5434;Parent=Msa1376980-mRNA-1
tig0019847	exon	19103	19300	19103	ID=Msa1376980-mRNA-1:exon:5433;Parent=Msa1376980-mRNA-1
tig0019847	CDS	21172	21232	21172	ID=Msa1376980-mRNA-1:cds;Parent=Msa1376980-mRNA-1
tig0019847	CDS	20753	20907	20753	ID=Msa1376980-mRNA-1:cds;Parent=Msa1376980-mRNA-1
tig0019847	CDS	20439	20631	20439	ID=Msa1376980-mRNA-1:cds;Parent=Msa1376980-mRNA-1
tig0019847	CDS	19415	19806	19415	ID=Msa1376980-mRNA-1:cds;Parent=Msa1376980-mRNA-1
tig0019847	CDS	19103	19300	19103	ID=Msa1376980-mRNA-1:cds;Parent=Msa1376980-mRNA-1

Gene Sequence

>Msa1376980

ATGAGTTGTTTTTCTGGCTTTGTTCATTGTTGGAAAAAGAATGGAGGAACAAACACATCAGAGGGAAAGGGGAAGAGTGTGAGAAGCTATCAAAGCAATAAGGTAGCAACTAGGTTTAGTTTTCAAGAGCTTTCAATGGTGACAGGAGGTTTTAAGGAACTGATTGGCGAAGGTGGTTTTGGAAGAGTTTACAAGGGTTGTCTCGCAACCGGCGAGCTTGTTGCTGTGAAACGGTTAAATCCAAATGGTGGTCAAGGTTGTCAGGAATTTCTGACCGAGGTTCTTATGCTATGTGTGTTGCGTCATTCTAATTATCTTGTTAAGTTAATTGGCTATTGCAGCAATATAGATCAAAAGCTTTTGGTTTATGAATACATGCCTAAGGGATGTCTTGAAGATCATCTTTTTGATCTTACCCGAGACAAAGAACCTCTAAGCTGGAGATCTCGAATGAAGATTGCTGTTGGAGCAGCTCGGGGTCTTGAATATCTCCATTGTAATGCAGAACCGTCTGTTATCTATCGAGACATGAAATCTGCCAACATTTTATTGGACAATGACTTCAATGCTAAACTGTCCGATTTTGGTCTTGCAAAATTAGGACCTACTGGAGACAACACTCATGTTGAAACCAGAGTGATGGGTACAGAAGGCTACTGCGCACCAGAATATGCGAAGACTGGCAAATTAACTCGACAATCTGATATCTACAGTTTTGGTATGGTTTTGCTAGAGTTGATAACTGGACGTAGAGCACTAGATAATAGTAGAAGAAGAGGAGAGCGAGACTTAAAGTCATGGTCTCGCCCATATTTTGATGGCCGGAGAAAGTATGAACATATGGTTGACCCTCTTCTGCAAGGACACTTCCCCGTCAGCAGTTTGCATGAGATGATTTATATGACTGCTATGTGTCTCAGGGAGGAACCAAAATCCCGTCCACGCATTGGTGAAATTGTTGCCACACTGGAATTCCTAGCTTCTCGTAGTTACCCCTGA

Protein sequence

>Msa1376980

MSCFSGFVHCWKKNGGTNTSEGKGKSVRSYQSNKVATRFSFQELSMVTGGFKELIGEGGFGRVYKGCLATGELVAVKRLNPNGGQGCQEFLTEVLMLCVLRHSNYLVKLIGYCSNIDQKLLVYEYMPKGCLEDHLFDLTRDKEPLSWRSRMKIAVGAARGLEYLHCNAEPSVIYRDMKSANILLDNDFNAKLSDFGLAKLGPTGDNTHVETRVMGTEGYCAPEYAKTGKLTRQSDIYSFGMVLLELITGRRALDNSRRRGERDLKSWSRPYFDGRRKYEHMVDPLLQGHFPVSSLHEMIYMTAMCLREEPKSRPRIGEIVATLEFLASRSYP*