Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377910 | GAU46787.1 | 52.448 | 143 | 39 | 3 | 152 | 265 | 314 | 456 | 2.85e-30 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377910 | A0A2Z6PML8 | 52.448 | 143 | 39 | 3 | 152 | 265 | 314 | 456 | 1.36e-30 | 131 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1377910 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377910 | MtrunA17_Chr8g0370511 | 50.000 | 140 | 41 | 3 | 155 | 265 | 313 | 452 | 1.88e-29 | 117 |
| Msa1377910 | MtrunA17_Chr8g0339021 | 47.857 | 140 | 44 | 3 | 155 | 265 | 307 | 446 | 3.44e-28 | 113 |
| Msa1377910 | MtrunA17_Chr7g0223531 | 48.592 | 142 | 45 | 3 | 152 | 265 | 321 | 462 | 4.21e-27 | 110 |
| Msa1377910 | MtrunA17_Chr3g0085731 | 43.312 | 157 | 55 | 5 | 138 | 265 | 315 | 466 | 5.94e-27 | 109 |
| Msa1377910 | MtrunA17_Chr8g0339041 | 68.919 | 74 | 23 | 0 | 1 | 74 | 254 | 327 | 7.67e-26 | 104 |
| Msa1377910 | MtrunA17_Chr5g0420331 | 48.592 | 142 | 44 | 4 | 153 | 265 | 312 | 453 | 3.30e-25 | 104 |
| Msa1377910 | MtrunA17_Chr8g0339031 | 41.259 | 143 | 55 | 3 | 152 | 265 | 320 | 462 | 3.70e-24 | 101 |
| Msa1377910 | MtrunA17_Chr3g0085541 | 41.401 | 157 | 58 | 5 | 138 | 265 | 314 | 465 | 3.95e-24 | 101 |
| Msa1377910 | MtrunA17_Chr3g0114401 | 43.357 | 143 | 52 | 3 | 152 | 265 | 191 | 333 | 9.17e-24 | 100 |
| Msa1377910 | MtrunA17_Chr5g0420341 | 46.154 | 143 | 48 | 3 | 152 | 265 | 311 | 453 | 2.69e-23 | 99.0 |
| Msa1377910 | MtrunA17_Chr8g0343801 | 41.259 | 143 | 55 | 3 | 152 | 265 | 315 | 457 | 1.50e-22 | 96.7 |
| Msa1377910 | MtrunA17_Chr8g0338851 | 39.437 | 142 | 57 | 3 | 153 | 265 | 214 | 355 | 1.16e-20 | 90.5 |
| Msa1377910 | MtrunA17_Chr2g0296461 | 38.571 | 140 | 57 | 3 | 152 | 262 | 97 | 236 | 2.37e-20 | 87.0 |
| Msa1377910 | MtrunA17_Chr8g0338881 | 39.161 | 143 | 58 | 3 | 152 | 265 | 339 | 481 | 2.23e-18 | 84.7 |
| Msa1377910 | MtrunA17_Chr6g0455551 | 38.732 | 142 | 58 | 4 | 152 | 264 | 386 | 527 | 2.33e-18 | 84.7 |
| Msa1377910 | MtrunA17_Chr4g0009351 | 36.620 | 142 | 61 | 4 | 152 | 264 | 222 | 363 | 2.56e-18 | 83.6 |
| Msa1377910 | MtrunA17_Chr6g0455131 | 36.620 | 142 | 61 | 3 | 152 | 264 | 394 | 535 | 1.16e-17 | 82.4 |
| Msa1377910 | MtrunA17_Chr8g0352221 | 36.364 | 143 | 62 | 3 | 152 | 265 | 304 | 446 | 3.98e-17 | 80.9 |
| Msa1377910 | MtrunA17_Chr4g0010711 | 37.931 | 145 | 58 | 3 | 152 | 265 | 820 | 963 | 4.95e-17 | 80.9 |
| Msa1377910 | MtrunA17_Chr4g0005851 | 38.028 | 142 | 59 | 4 | 152 | 264 | 339 | 480 | 6.63e-17 | 80.5 |
| Msa1377910 | MtrunA17_Chr6g0454951 | 36.364 | 143 | 62 | 4 | 152 | 265 | 396 | 538 | 1.21e-16 | 79.7 |
| Msa1377910 | MtrunA17_Chr8g0339011 | 31.068 | 206 | 102 | 5 | 99 | 265 | 242 | 446 | 3.72e-16 | 78.2 |
| Msa1377910 | MtrunA17_Chr8g0338901 | 39.535 | 129 | 49 | 3 | 166 | 265 | 345 | 473 | 1.20e-15 | 76.6 |
| Msa1377910 | MtrunA17_Chr6g0454851 | 35.664 | 143 | 63 | 4 | 152 | 265 | 402 | 544 | 1.21e-15 | 76.6 |
| Msa1377910 | MtrunA17_Chr7g0255681 | 36.111 | 144 | 62 | 4 | 152 | 265 | 1317 | 1460 | 1.40e-15 | 76.6 |
| Msa1377910 | MtrunA17_Chr4g0009141 | 37.063 | 143 | 59 | 4 | 152 | 264 | 827 | 968 | 1.45e-15 | 76.6 |
| Msa1377910 | MtrunA17_Chr4g0014831 | 34.965 | 143 | 64 | 3 | 152 | 265 | 95 | 237 | 2.53e-15 | 75.5 |
| Msa1377910 | MtrunA17_Chr6g0455031 | 36.879 | 141 | 61 | 4 | 152 | 264 | 330 | 470 | 3.81e-15 | 75.1 |
| Msa1377910 | MtrunA17_Chr8g0338981 | 35.766 | 137 | 59 | 3 | 158 | 265 | 314 | 450 | 3.88e-15 | 75.1 |
| Msa1377910 | MtrunA17_Chr6g0454961 | 35.211 | 142 | 63 | 5 | 152 | 264 | 336 | 477 | 4.31e-15 | 75.1 |
| Msa1377910 | MtrunA17_Chr8g0352211 | 34.965 | 143 | 64 | 3 | 152 | 265 | 322 | 464 | 8.60e-15 | 74.3 |
| Msa1377910 | MtrunA17_Chr4g0005871 | 37.500 | 144 | 57 | 3 | 152 | 264 | 435 | 576 | 9.07e-15 | 73.9 |
| Msa1377910 | MtrunA17_Chr6g0454931 | 33.803 | 142 | 65 | 3 | 152 | 264 | 377 | 518 | 9.63e-15 | 73.9 |
| Msa1377910 | MtrunA17_Chr4g0009301 | 35.915 | 142 | 62 | 3 | 152 | 264 | 847 | 988 | 9.95e-15 | 73.9 |
| Msa1377910 | MtrunA17_Chr5g0414761 | 37.063 | 143 | 61 | 4 | 152 | 265 | 96 | 238 | 1.31e-14 | 73.6 |
| Msa1377910 | MtrunA17_Chr4g0009101 | 34.507 | 142 | 64 | 3 | 152 | 264 | 845 | 986 | 4.04e-14 | 72.0 |
| Msa1377910 | MtrunA17_Chr6g0454901 | 34.483 | 145 | 62 | 3 | 152 | 265 | 121 | 263 | 1.82e-13 | 69.7 |
| Msa1377910 | MtrunA17_Chr6g0455191 | 33.803 | 142 | 65 | 4 | 152 | 264 | 618 | 759 | 2.42e-13 | 69.7 |
| Msa1377910 | MtrunA17_Chr5g0430531 | 35.075 | 134 | 53 | 4 | 138 | 242 | 304 | 432 | 2.70e-13 | 69.3 |
| Msa1377910 | MtrunA17_Chr4g0009241 | 35.915 | 142 | 62 | 3 | 152 | 264 | 849 | 990 | 2.73e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAGTGCGCTCCTCATTT+TGG | 0.200905 | tig0020032:+93351 | None:intergenic |
| TTTAGAAGATTATACGTTAA+AGG | 0.223459 | tig0020032:-91457 | Msa1377910:CDS |
| GCTGGTATACTCGCAGTTTC+AGG | 0.226000 | tig0020032:-93309 | Msa1377910:intron |
| TTTACTGATGATAGGGATAT+CGG | 0.328238 | tig0020032:-93062 | Msa1377910:CDS |
| TTACTGAATTTACTGATGAT+AGG | 0.337209 | tig0020032:-93070 | Msa1377910:CDS |
| TATATAAATCCTAAGTTGTT+TGG | 0.338542 | tig0020032:-91770 | Msa1377910:intron |
| GACATATGTTGGTTATTCAT+TGG | 0.343899 | tig0020032:-91423 | Msa1377910:CDS |
| CCATTCAGATATTCAGTAAC+AGG | 0.360181 | tig0020032:+93116 | None:intergenic |
| TTCTGTTGCACTTGATCGTT+GGG | 0.380421 | tig0020032:+91501 | None:intergenic |
| TATGACATTGTCAACTGATA+AGG | 0.397671 | tig0020032:-94227 | Msa1377910:CDS |
| CTAAATTCGTCTCTAGGACT+TGG | 0.408937 | tig0020032:+91630 | None:intergenic |
| AGCAATGAAGATACAAGATA+TGG | 0.422922 | tig0020032:-94086 | Msa1377910:CDS |
| TCTTGTATCTTCATTGCTGT+TGG | 0.431184 | tig0020032:+94091 | None:intergenic |
| TCCTTGTTGCGGAAAGTCCT+TGG | 0.446074 | tig0020032:-91588 | Msa1377910:CDS |
| ATCACTTAGTGCTAACCAAA+TGG | 0.448316 | tig0020032:-91699 | Msa1377910:CDS |
| CCTGTTACTGAATATCTGAA+TGG | 0.458682 | tig0020032:-93116 | Msa1377910:CDS |
| TACTGAATTTACTGATGATA+GGG | 0.463619 | tig0020032:-93069 | Msa1377910:CDS |
| TTCATTGCTGTTGGCACTCG+TGG | 0.463712 | tig0020032:+94100 | None:intergenic |
| AGCGCACTCACAGAAGTTGC+AGG | 0.467663 | tig0020032:-93340 | Msa1377910:CDS |
| TTTCTGTTGCACTTGATCGT+TGG | 0.472693 | tig0020032:+91500 | None:intergenic |
| ACAGAAGTTGCAGGACTAGC+TGG | 0.476830 | tig0020032:-93331 | Msa1377910:CDS |
| AACTGAAAAGTTCAAGTGAC+TGG | 0.485439 | tig0020032:+91669 | None:intergenic |
| AGGACTTGGTTGACCAAAGC+AGG | 0.489951 | tig0020032:+91644 | None:intergenic |
| AGTTCACTAAATTCGTCTCT+AGG | 0.494682 | tig0020032:+91624 | None:intergenic |
| TTACTGATGATAGGGATATC+GGG | 0.517135 | tig0020032:-93061 | Msa1377910:CDS |
| TACTGAATATCTGAATGGAT+TGG | 0.518723 | tig0020032:-93111 | Msa1377910:CDS |
| TTCAGTAATTTGTTGCACAC+GGG | 0.529545 | tig0020032:+93085 | None:intergenic |
| AAGTTCTGTTGTCCAAAATG+AGG | 0.557323 | tig0020032:-93363 | Msa1377910:CDS |
| AAGTTGCAGGACTAGCTGGC+TGG | 0.569931 | tig0020032:-93327 | Msa1377910:CDS |
| ATTCAGTAATTTGTTGCACA+CGG | 0.580601 | tig0020032:+93084 | None:intergenic |
| ACCAAGGACTTTCCGCAACA+AGG | 0.586440 | tig0020032:+91587 | None:intergenic |
| AAACTGAGAATCAACTTCGA+TGG | 0.589291 | tig0020032:-91480 | Msa1377910:CDS |
| CATTGAAGATGTCAGAGGAG+AGG | 0.605046 | tig0020032:-94030 | Msa1377910:intron |
| TCAGTAATTTGTTGCACACG+GGG | 0.605630 | tig0020032:+93086 | None:intergenic |
| TTATTACGACTAGAGATGAA+CGG | 0.623949 | tig0020032:-91730 | Msa1377910:CDS |
| TGTCAACTGATAAGGTTCAG+TGG | 0.649714 | tig0020032:-94219 | Msa1377910:CDS |
| TGAAGCATTGAAGATGTCAG+AGG | 0.656753 | tig0020032:-94035 | Msa1377910:CDS |
| TCTCAGATAAGTTACAACCA+AGG | 0.713401 | tig0020032:+91571 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTTTTTTTAATTGTAAA+TGG | - | tig0020032:93550-93569 | Msa1377910:intron | 10.0% |
| !! | AGTATAATTAAATAAAAGAG+AGG | + | tig0020032:93533-93552 | None:intergenic | 15.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | + | tig0020032:91836-91855 | None:intergenic | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | + | tig0020032:91918-91937 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | + | tig0020032:91919-91938 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | + | tig0020032:91920-91939 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | - | tig0020032:91961-91980 | Msa1377910:intron | 20.0% |
| !! | AAGAAATGTGAAAAATACAA+AGG | - | tig0020032:92043-92062 | Msa1377910:intron | 20.0% |
| !! | AGAAATGTGAAAAATACAAA+GGG | - | tig0020032:92044-92063 | Msa1377910:intron | 20.0% |
| !! | AAAAAATGTGAAAAAGACAA+AGG | - | tig0020032:92911-92930 | Msa1377910:intron | 20.0% |
| !! | AAAAATGTGAAAAAGACAAA+GGG | - | tig0020032:92912-92931 | Msa1377910:intron | 20.0% |
| !!! | ATCTTATCCTTTATTTTTAG+TGG | + | tig0020032:93005-93024 | None:intergenic | 20.0% |
| !! | TAAGATACATAACATTGAAT+AGG | - | tig0020032:93019-93038 | Msa1377910:intron | 20.0% |
| !! | AAGATACATAACATTGAATA+GGG | - | tig0020032:93020-93039 | Msa1377910:intron | 20.0% |
| !!! | AATTTTGAGTTTTTTTTTCG+TGG | + | tig0020032:93699-93718 | None:intergenic | 20.0% |
| !! | TATATAAATCCTAAGTTGTT+TGG | - | tig0020032:93854-93873 | Msa1377910:intron | 20.0% |
| !! | AAAAAAATTTATCCTTGTTG+CGG | - | tig0020032:94025-94044 | Msa1377910:intron | 20.0% |
| !! | TTTAGAAGATTATACGTTAA+AGG | - | tig0020032:94167-94186 | Msa1377910:CDS | 20.0% |
| !!! | ATATACTTTTTGACATATGT+TGG | - | tig0020032:94190-94209 | Msa1377910:CDS | 20.0% |
| !! | TGGAACATTACTTTCATTTT+AGG | - | tig0020032:91425-91444 | Msa1377910:CDS | 25.0% |
| ! | TATCTGCAAACAAGAAAAAT+GGG | + | tig0020032:91487-91506 | None:intergenic | 25.0% |
| ! | ATATCTGCAAACAAGAAAAA+TGG | + | tig0020032:91488-91507 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTGTTTGCAGATA+TGG | - | tig0020032:91487-91506 | Msa1377910:CDS | 25.0% |
| ! | CACAAAACAGAAATCAATTT+CGG | + | tig0020032:91729-91748 | None:intergenic | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | + | tig0020032:91833-91852 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | + | tig0020032:91837-91856 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | tig0020032:91871-91890 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | tig0020032:91872-91891 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | + | tig0020032:91908-91927 | None:intergenic | 25.0% |
| ! | GAAATGTGAAAAATACAAAG+GGG | - | tig0020032:92045-92064 | Msa1377910:intron | 25.0% |
| ! | AAATGTGAAAAATACAAAGG+GGG | - | tig0020032:92046-92065 | Msa1377910:intron | 25.0% |
| !!! | TCTGATTTTTTCTTGTTGTA+TGG | - | tig0020032:92151-92170 | Msa1377910:intron | 25.0% |
| ! | AGAAATGCTTGAAACAATTA+TGG | + | tig0020032:92199-92218 | None:intergenic | 25.0% |
| ! | TTACTGAATTTACTGATGAT+AGG | - | tig0020032:92554-92573 | Msa1377910:intron | 25.0% |
| ! | TACTGAATTTACTGATGATA+GGG | - | tig0020032:92555-92574 | Msa1377910:intron | 25.0% |
| ! | TCAAATCCATAGTAAATGTA+AGG | - | tig0020032:92631-92650 | Msa1377910:intron | 25.0% |
| ! | CAAATCCATAGTAAATGTAA+GGG | - | tig0020032:92632-92651 | Msa1377910:intron | 25.0% |
| !!! | CATTTAGGGTCAAATTTTTA+GGG | + | tig0020032:92711-92730 | None:intergenic | 25.0% |
| !!! | ACATTTAGGGTCAAATTTTT+AGG | + | tig0020032:92712-92731 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | tig0020032:91871-91890 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | tig0020032:91872-91891 | None:intergenic | 25.0% |
| ! | AAGTTAGTAGTATTAGTTAG+GGG | + | tig0020032:92786-92805 | None:intergenic | 25.0% |
| ! | CAAGTTAGTAGTATTAGTTA+GGG | + | tig0020032:92787-92806 | None:intergenic | 25.0% |
| ! | ACAAGTTAGTAGTATTAGTT+AGG | + | tig0020032:92788-92807 | None:intergenic | 25.0% |
| ! | TTGAATACACATACAAACAA+AGG | - | tig0020032:92829-92848 | Msa1377910:intron | 25.0% |
| ! | AAAATGTGAAAAAGACAAAG+GGG | - | tig0020032:92913-92932 | Msa1377910:intron | 25.0% |
| ! | TTCAGATCCACTAAAAATAA+AGG | - | tig0020032:92995-93014 | Msa1377910:intron | 25.0% |
| ! | CGTTTAATGTTTCCAAAATA+TGG | + | tig0020032:93208-93227 | None:intergenic | 25.0% |
| !! | ATATAGAGAGATACTTTTGT+TGG | + | tig0020032:93249-93268 | None:intergenic | 25.0% |
| ! | AATTAAATAAAAGAGAGGAG+TGG | + | tig0020032:93528-93547 | None:intergenic | 25.0% |
| !! | AATACACAACACTTTTCTAT+TGG | + | tig0020032:93619-93638 | None:intergenic | 25.0% |
| !! | TAGTTGAAATGTTGACTAAA+TGG | + | tig0020032:93652-93671 | None:intergenic | 25.0% |
| ! | AAAAACTCAAAATTTAGTGC+AGG | - | tig0020032:93705-93724 | Msa1377910:intron | 25.0% |
| ! | CAACTTAGGATTTATATACA+GGG | + | tig0020032:93852-93871 | None:intergenic | 25.0% |
| ! | ACAACTTAGGATTTATATAC+AGG | + | tig0020032:93853-93872 | None:intergenic | 25.0% |
| AGCAATGAAGATACAAGATA+TGG | - | tig0020032:91538-91557 | Msa1377910:intron | 30.0% | |
| CATAAGCAATTTCCTTATCA+TGG | + | tig0020032:91643-91662 | None:intergenic | 30.0% | |
| !! | CGAAATTGATTTCTGTTTTG+TGG | - | tig0020032:91727-91746 | Msa1377910:CDS | 30.0% |
| CATCTAGTAATTTGAAAAGG+GGG | + | tig0020032:91869-91888 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | tig0020032:91870-91889 | None:intergenic | 30.0% | |
| CATACAAACAAAGGACAATT+TGG | - | tig0020032:91970-91989 | Msa1377910:intron | 30.0% | |
| AATGTGAAAAATACAAAGGG+GGG | - | tig0020032:92047-92066 | Msa1377910:intron | 30.0% | |
| ACCTGCAACATAAAACTAAT+CGG | + | tig0020032:92102-92121 | None:intergenic | 30.0% | |
| TACTGAATATCTGAATGGAT+TGG | - | tig0020032:92513-92532 | Msa1377910:intron | 30.0% | |
| !! | ATTCAGTAATTTGTTGCACA+CGG | + | tig0020032:92543-92562 | None:intergenic | 30.0% |
| TTTACTGATGATAGGGATAT+CGG | - | tig0020032:92562-92581 | Msa1377910:intron | 30.0% | |
| TTCTACCCTTACATTTACTA+TGG | + | tig0020032:92640-92659 | None:intergenic | 30.0% | |
| TGAAAAGGGGTTTACATTTA+GGG | + | tig0020032:92725-92744 | None:intergenic | 30.0% | |
| TTGAAAAGGGGTTTACATTT+AGG | + | tig0020032:92726-92745 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | tig0020032:91870-91889 | None:intergenic | 30.0% | |
| CATACAAACAAAGGACAATT+TGG | - | tig0020032:91970-91989 | Msa1377910:intron | 30.0% | |
| AAATGTGAAAAAGACAAAGG+GGG | - | tig0020032:92914-92933 | Msa1377910:intron | 30.0% | |
| !!! | ATTTTTAGTGGATCTGAAGA+TGG | + | tig0020032:92993-93012 | None:intergenic | 30.0% |
| TTGTGTGTTAGTATAAAGTG+TGG | - | tig0020032:93469-93488 | Msa1377910:intron | 30.0% | |
| TGTGTGTTAGTATAAAGTGT+GGG | - | tig0020032:93470-93489 | Msa1377910:intron | 30.0% | |
| TTAAAATGTGTGTTTATGCG+TGG | - | tig0020032:93592-93611 | Msa1377910:intron | 30.0% | |
| TAAAATGTGTGTTTATGCGT+GGG | - | tig0020032:93593-93612 | Msa1377910:intron | 30.0% | |
| TTATTACGACTAGAGATGAA+CGG | - | tig0020032:93894-93913 | Msa1377910:intron | 30.0% | |
| ! | GACATATGTTGGTTATTCAT+TGG | - | tig0020032:94201-94220 | Msa1377910:CDS | 30.0% |
| TCTTGTATCTTCATTGCTGT+TGG | + | tig0020032:91536-91555 | None:intergenic | 35.0% | |
| ATTTGTCCAATGCCATGATA+AGG | - | tig0020032:91628-91647 | Msa1377910:CDS | 35.0% | |
| CAATTTCCTTATCATGGCAT+TGG | + | tig0020032:91637-91656 | None:intergenic | 35.0% | |
| CAAATGGGTGGTTACATTAA+GGG | + | tig0020032:91821-91840 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | + | tig0020032:91822-91841 | None:intergenic | 35.0% | |
| TGAAAAGGGGGTTACATTTA+GGG | + | tig0020032:91857-91876 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | + | tig0020032:91858-91877 | None:intergenic | 35.0% | |
| !!! | TCCGATTAGTTTTATGTTGC+AGG | - | tig0020032:92098-92117 | Msa1377910:intron | 35.0% |
| AAGTTCTGTTGTCCAAAATG+AGG | - | tig0020032:92261-92280 | Msa1377910:intron | 35.0% | |
| TCAGTTCACTTTCACTCTTT+CGG | + | tig0020032:92438-92457 | None:intergenic | 35.0% | |
| CCATTCAGATATTCAGTAAC+AGG | + | tig0020032:92511-92530 | None:intergenic | 35.0% | |
| CCTGTTACTGAATATCTGAA+TGG | - | tig0020032:92508-92527 | Msa1377910:intron | 35.0% | |
| !! | TTCAGTAATTTGTTGCACAC+GGG | + | tig0020032:92542-92561 | None:intergenic | 35.0% |
| TTACTGATGATAGGGATATC+GGG | - | tig0020032:92563-92582 | Msa1377910:intron | 35.0% | |
| ! | TATTAGTTAGGGGCATGTTT+AGG | + | tig0020032:92776-92795 | None:intergenic | 35.0% |
| ACAAAGGGGGTTTACATATA+GGG | - | tig0020032:92927-92946 | Msa1377910:intron | 35.0% | |
| ! | AACCATTGATCCAGGAATTT+TGG | - | tig0020032:93046-93065 | Msa1377910:intron | 35.0% |
| TTCCAAAATTCCTGGATCAA+TGG | + | tig0020032:93051-93070 | None:intergenic | 35.0% | |
| !! | ATCCAGGAATTTTGGAAAGT+GGG | - | tig0020032:93054-93073 | Msa1377910:intron | 35.0% |
| CAAAATATGGAGAATCGTAG+AGG | + | tig0020032:93195-93214 | None:intergenic | 35.0% | |
| ! | CTCTACGATTCTCCATATTT+TGG | - | tig0020032:93193-93212 | Msa1377910:intron | 35.0% |
| TTAGTATAAAGTGTGGGTGT+GGG | - | tig0020032:93476-93495 | Msa1377910:intron | 35.0% | |
| !! | AAGTGTTGTGTATTTTCGTG+TGG | - | tig0020032:93625-93644 | Msa1377910:intron | 35.0% |
| ! | AGTGTTGTGTATTTTCGTGT+GGG | - | tig0020032:93626-93645 | Msa1377910:intron | 35.0% |
| ATCACTTAGTGCTAACCAAA+TGG | - | tig0020032:93925-93944 | Msa1377910:intron | 35.0% | |
| AACTGAAAAGTTCAAGTGAC+TGG | + | tig0020032:93958-93977 | None:intergenic | 35.0% | |
| ! | AGTCACTTGAACTTTTCAGT+TGG | - | tig0020032:93957-93976 | Msa1377910:intron | 35.0% |
| AGTTCACTAAATTCGTCTCT+AGG | + | tig0020032:94003-94022 | None:intergenic | 35.0% | |
| TCTCAGATAAGTTACAACCA+AGG | + | tig0020032:94056-94075 | None:intergenic | 35.0% | |
| TTGGTTGTAACTTATCTGAG+AGG | - | tig0020032:94055-94074 | Msa1377910:CDS | 35.0% | |
| AAACTGAGAATCAACTTCGA+TGG | - | tig0020032:94144-94163 | Msa1377910:CDS | 35.0% | |
| TGTCAACTGATAAGGTTCAG+TGG | - | tig0020032:91405-91424 | Msa1377910:CDS | 40.0% | |
| !! | TGAAGCATTGAAGATGTCAG+AGG | - | tig0020032:91589-91608 | Msa1377910:CDS | 40.0% |
| TACAAAGGGGGGTTACATTA+AGG | - | tig0020032:92058-92077 | Msa1377910:intron | 40.0% | |
| ACAAAGGGGGGTTACATTAA+GGG | - | tig0020032:92059-92078 | Msa1377910:intron | 40.0% | |
| AGTTAACTAGGTTGTCACTG+CGG | - | tig0020032:92125-92144 | Msa1377910:intron | 40.0% | |
| !! | TCAGTAATTTGTTGCACACG+GGG | + | tig0020032:92541-92560 | None:intergenic | 40.0% |
| GACAAAGGGGGTTTACATAT+AGG | - | tig0020032:92926-92945 | Msa1377910:intron | 40.0% | |
| ACGGAGGGAGTAATAGTAAA+GGG | - | tig0020032:92950-92969 | Msa1377910:intron | 40.0% | |
| TAGGGTATAACCATTGATCC+AGG | - | tig0020032:93038-93057 | Msa1377910:intron | 40.0% | |
| !! | GATCCAGGAATTTTGGAAAG+TGG | - | tig0020032:93053-93072 | Msa1377910:intron | 40.0% |
| !! | TCCAGGAATTTTGGAAAGTG+GGG | - | tig0020032:93055-93074 | Msa1377910:intron | 40.0% |
| GTTAGTATAAAGTGTGGGTG+TGG | - | tig0020032:93475-93494 | Msa1377910:intron | 40.0% | |
| CTCTCGGTCTTAGTTATACA+GGG | + | tig0020032:93764-93783 | None:intergenic | 40.0% | |
| TCTCTCGGTCTTAGTTATAC+AGG | + | tig0020032:93765-93784 | None:intergenic | 40.0% | |
| !!! | GGCTTTTAATTTCCCAGACT+TGG | + | tig0020032:93831-93850 | None:intergenic | 40.0% |
| GTTCGCAAACCAAACAACTT+AGG | + | tig0020032:93866-93885 | None:intergenic | 40.0% | |
| !! | CTAAATTCGTCTCTAGGACT+TGG | + | tig0020032:93997-94016 | None:intergenic | 40.0% |
| CTGAGAGGACAAAACAAGAA+TGG | - | tig0020032:94070-94089 | Msa1377910:CDS | 40.0% | |
| TTCTGTTGCACTTGATCGTT+GGG | + | tig0020032:94126-94145 | None:intergenic | 40.0% | |
| TTTCTGTTGCACTTGATCGT+TGG | + | tig0020032:94127-94146 | None:intergenic | 40.0% | |
| CATTGAAGATGTCAGAGGAG+AGG | - | tig0020032:91594-91613 | Msa1377910:CDS | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | + | tig0020032:91813-91832 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | + | tig0020032:91817-91836 | None:intergenic | 45.0% | |
| GTTGCAGGTGTCAGTTAACT+AGG | - | tig0020032:92113-92132 | Msa1377910:intron | 45.0% | |
| ATAGGGATATCGGGAATGTG+TGG | - | tig0020032:92572-92591 | Msa1377910:intron | 45.0% | |
| AGGGGGTTTACATATAGGGA+CGG | - | tig0020032:92931-92950 | Msa1377910:intron | 45.0% | |
| GGTTTACATATAGGGACGGA+GGG | - | tig0020032:92935-92954 | Msa1377910:intron | 45.0% | |
| GACGGAGGGAGTAATAGTAA+AGG | - | tig0020032:92949-92968 | Msa1377910:intron | 45.0% | |
| !! | CCAGGAATTTTGGAAAGTGG+GGG | - | tig0020032:93056-93075 | Msa1377910:intron | 45.0% |
| TCACTCGCATGGAAGATGAA+TGG | + | tig0020032:93294-93313 | None:intergenic | 45.0% | |
| ATTCATCTTCCATGCGAGTG+AGG | - | tig0020032:93293-93312 | Msa1377910:intron | 45.0% | |
| TTCATCTTCCATGCGAGTGA+GGG | - | tig0020032:93294-93313 | Msa1377910:intron | 45.0% | |
| ! | GAGGAGACAGAAGAGGTTTT+AGG | - | tig0020032:93434-93453 | Msa1377910:intron | 45.0% |
| ! | ATGCAAGCACAAGAGTGTGT+AGG | + | tig0020032:93737-93756 | None:intergenic | 45.0% |
| CGGTCTTAGTTATACAGGGA+CGG | + | tig0020032:93760-93779 | None:intergenic | 45.0% | |
| TAAGACCGAGAGAAGACTAC+AGG | - | tig0020032:93772-93791 | Msa1377910:intron | 45.0% | |
| AAGACCGAGAGAAGACTACA+GGG | - | tig0020032:93773-93792 | Msa1377910:intron | 45.0% | |
| TTGTCCCTGTAGTCTTCTCT+CGG | + | tig0020032:93780-93799 | None:intergenic | 45.0% | |
| GAGAAGACTACAGGGACAAT+AGG | - | tig0020032:93781-93800 | Msa1377910:intron | 45.0% | |
| CTTGGTCACATCATCGAGTA+CGG | + | tig0020032:93813-93832 | None:intergenic | 45.0% | |
| TCGATGATGTGACCAAGTCT+GGG | - | tig0020032:93816-93835 | Msa1377910:intron | 45.0% | |
| !!! | GTGACTGGTTTTCGTCCATT+TGG | + | tig0020032:93943-93962 | None:intergenic | 45.0% |
| !! | ACTTTTCAGTTGGCCTGCTT+TGG | - | tig0020032:93967-93986 | Msa1377910:intron | 45.0% |
| ! | TTCATTGCTGTTGGCACTCG+TGG | + | tig0020032:91527-91546 | None:intergenic | 50.0% |
| GTGGTTACATTAAGGGACGG+AGG | + | tig0020032:91814-91833 | None:intergenic | 50.0% | |
| AGGGGGGTTACATTAAGGGA+CGG | - | tig0020032:92063-92082 | Msa1377910:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | - | tig0020032:92067-92086 | Msa1377910:intron | 50.0% | |
| ! | TGTGAGTGCGCTCCTCATTT+TGG | + | tig0020032:92276-92295 | None:intergenic | 50.0% |
| ! | ACAGAAGTTGCAGGACTAGC+TGG | - | tig0020032:92293-92312 | Msa1377910:intron | 50.0% |
| GCTGGTATACTCGCAGTTTC+AGG | - | tig0020032:92315-92334 | Msa1377910:intron | 50.0% | |
| TATCGGGAATGTGTGGCTCT+AGG | - | tig0020032:92579-92598 | Msa1377910:intron | 50.0% | |
| GGGTTTACATATAGGGACGG+AGG | - | tig0020032:92934-92953 | Msa1377910:intron | 50.0% | |
| CCCCCACTTTCCAAAATTCC+TGG | + | tig0020032:93059-93078 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | tig0020032:93361-93380 | Msa1377910:CDS | 50.0% | |
| AGAGAGAGAGGAGACAGAAG+AGG | - | tig0020032:93427-93446 | Msa1377910:intron | 50.0% | |
| AGAGAGGAGTGGAAACGTGA+GGG | + | tig0020032:93517-93536 | None:intergenic | 50.0% | |
| AAGAGAGGAGTGGAAACGTG+AGG | + | tig0020032:93518-93537 | None:intergenic | 50.0% | |
| CTCGATGATGTGACCAAGTC+TGG | - | tig0020032:93815-93834 | Msa1377910:intron | 50.0% | |
| ! | AGGACTTGGTTGACCAAAGC+AGG | + | tig0020032:93983-94002 | None:intergenic | 50.0% |
| TCCTTGTTGCGGAAAGTCCT+TGG | - | tig0020032:94036-94055 | Msa1377910:CDS | 50.0% | |
| ACCAAGGACTTTCCGCAACA+AGG | + | tig0020032:94040-94059 | None:intergenic | 50.0% | |
| GGGGTTACATTAAGGGACGG+AGG | - | tig0020032:92066-92085 | Msa1377910:intron | 55.0% | |
| AGCGCACTCACAGAAGTTGC+AGG | - | tig0020032:92284-92303 | Msa1377910:intron | 55.0% | |
| !! | AAGTTGCAGGACTAGCTGGC+TGG | - | tig0020032:92297-92316 | Msa1377910:intron | 55.0% |
| ATCTTCCATGCGAGTGAGGG+AGG | - | tig0020032:93297-93316 | Msa1377910:intron | 55.0% | |
| TCTTCCATGCGAGTGAGGGA+GGG | - | tig0020032:93298-93317 | Msa1377910:intron | 55.0% | |
| TCTCTCTCTCTCGTCTGCTC+AGG | + | tig0020032:93352-93371 | None:intergenic | 55.0% | |
| ATCACCCTCCCTCACTCGCA+TGG | + | tig0020032:93305-93324 | None:intergenic | 60.0% | |
| ATGCGAGTGAGGGAGGGTGA+TGG | - | tig0020032:93304-93323 | Msa1377910:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020032 | gene | 91398 | 94248 | 91398 | ID=Msa1377910;Name=Msa1377910 |
| tig0020032 | mRNA | 91398 | 94248 | 91398 | ID=Msa1377910-mRNA-1;Parent=Msa1377910;Name=Msa1377910-mRNA-1;_AED=0.41;_eAED=0.49;_QI=0|0|0|0.5|0.4|0.33|6|0|265 |
| tig0020032 | exon | 94031 | 94248 | 94031 | ID=Msa1377910-mRNA-1:exon:5842;Parent=Msa1377910-mRNA-1 |
| tig0020032 | exon | 93310 | 93403 | 93310 | ID=Msa1377910-mRNA-1:exon:5841;Parent=Msa1377910-mRNA-1 |
| tig0020032 | exon | 93058 | 93204 | 93058 | ID=Msa1377910-mRNA-1:exon:5840;Parent=Msa1377910-mRNA-1 |
| tig0020032 | exon | 92161 | 92166 | 92161 | ID=Msa1377910-mRNA-1:exon:5839;Parent=Msa1377910-mRNA-1 |
| tig0020032 | exon | 91586 | 91777 | 91586 | ID=Msa1377910-mRNA-1:exon:5838;Parent=Msa1377910-mRNA-1 |
| tig0020032 | exon | 91398 | 91538 | 91398 | ID=Msa1377910-mRNA-1:exon:5837;Parent=Msa1377910-mRNA-1 |
| tig0020032 | CDS | 94031 | 94248 | 94031 | ID=Msa1377910-mRNA-1:cds;Parent=Msa1377910-mRNA-1 |
| tig0020032 | CDS | 93310 | 93403 | 93310 | ID=Msa1377910-mRNA-1:cds;Parent=Msa1377910-mRNA-1 |
| tig0020032 | CDS | 93058 | 93204 | 93058 | ID=Msa1377910-mRNA-1:cds;Parent=Msa1377910-mRNA-1 |
| tig0020032 | CDS | 92161 | 92166 | 92161 | ID=Msa1377910-mRNA-1:cds;Parent=Msa1377910-mRNA-1 |
| tig0020032 | CDS | 91586 | 91777 | 91586 | ID=Msa1377910-mRNA-1:cds;Parent=Msa1377910-mRNA-1 |
| tig0020032 | CDS | 91398 | 91538 | 91398 | ID=Msa1377910-mRNA-1:cds;Parent=Msa1377910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
