Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384200 | XP_003612158.1 | 95.752 | 306 | 9 | 3 | 1 | 306 | 1 | 302 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384200 | sp|Q8LL11|WUS_PETHY | 48.797 | 291 | 99 | 12 | 27 | 297 | 42 | 302 | 9.28e-69 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384200 | B7UCW4 | 95.752 | 306 | 9 | 3 | 1 | 306 | 1 | 302 | 0.0 | 602 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1384200 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384200 | MtrunA17_Chr5g0405351 | 95.752 | 306 | 9 | 3 | 1 | 306 | 1 | 302 | 0.0 | 602 |
| Msa1384200 | MtrunA17_Chr4g0043891 | 67.164 | 67 | 21 | 1 | 28 | 94 | 4 | 69 | 2.07e-25 | 102 |
| Msa1384200 | MtrunA17_Chr8g0392991 | 64.000 | 75 | 26 | 1 | 20 | 94 | 84 | 157 | 2.29e-25 | 103 |
| Msa1384200 | MtrunA17_Chr5g0436661 | 59.459 | 74 | 26 | 2 | 32 | 102 | 33 | 105 | 2.48e-24 | 97.4 |
| Msa1384200 | MtrunA17_Chr7g0238431 | 67.692 | 65 | 20 | 1 | 30 | 94 | 6 | 69 | 7.25e-24 | 96.7 |
| Msa1384200 | MtrunA17_Chr4g0031341 | 68.254 | 63 | 19 | 1 | 32 | 94 | 25 | 86 | 2.21e-23 | 96.7 |
| Msa1384200 | MtrunA17_Chr1g0153171 | 55.844 | 77 | 33 | 1 | 18 | 94 | 76 | 151 | 3.87e-22 | 92.8 |
| Msa1384200 | MtrunA17_Chr8g0385441 | 78.723 | 47 | 10 | 0 | 48 | 94 | 97 | 143 | 3.64e-19 | 82.8 |
| Msa1384200 | MtrunA17_Chr3g0125111 | 76.596 | 47 | 11 | 0 | 48 | 94 | 95 | 141 | 5.79e-19 | 82.4 |
| Msa1384200 | MtrunA17_Chr7g0223471 | 48.438 | 64 | 32 | 1 | 32 | 95 | 47 | 109 | 9.85e-15 | 73.9 |
| Msa1384200 | MtrunA17_Chr2g0283141 | 44.928 | 69 | 37 | 1 | 26 | 94 | 49 | 116 | 6.51e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1384200 | AT2G17950.1 | 41.699 | 259 | 103 | 9 | 27 | 259 | 33 | 269 | 2.03e-47 | 161 |
| Msa1384200 | AT5G59340.1 | 63.514 | 74 | 26 | 1 | 21 | 94 | 3 | 75 | 2.08e-25 | 102 |
| Msa1384200 | AT3G18010.1 | 70.769 | 65 | 18 | 1 | 30 | 94 | 74 | 137 | 2.39e-25 | 104 |
| Msa1384200 | AT3G11260.1 | 60.000 | 75 | 27 | 2 | 20 | 94 | 14 | 85 | 1.01e-23 | 95.9 |
| Msa1384200 | AT2G28610.1 | 65.152 | 66 | 22 | 1 | 29 | 94 | 5 | 69 | 4.16e-23 | 95.9 |
| Msa1384200 | AT5G05770.1 | 62.319 | 69 | 25 | 1 | 32 | 100 | 29 | 96 | 6.63e-23 | 92.0 |
| Msa1384200 | AT1G46480.2 | 48.913 | 92 | 44 | 2 | 3 | 94 | 63 | 151 | 1.62e-22 | 92.8 |
| Msa1384200 | AT1G46480.1 | 48.913 | 92 | 44 | 2 | 3 | 94 | 63 | 151 | 8.00e-22 | 92.8 |
| Msa1384200 | AT2G01500.1 | 61.017 | 59 | 22 | 1 | 29 | 87 | 58 | 115 | 9.55e-19 | 84.7 |
| Msa1384200 | AT5G45980.1 | 52.381 | 63 | 29 | 1 | 32 | 94 | 55 | 116 | 1.03e-14 | 73.9 |
| Msa1384200 | AT2G33880.1 | 45.714 | 70 | 37 | 1 | 26 | 95 | 49 | 117 | 2.04e-14 | 73.6 |
| Msa1384200 | AT2G33880.2 | 45.714 | 70 | 37 | 1 | 26 | 95 | 49 | 117 | 2.07e-14 | 73.6 |
Find 66 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCCTAAGTGAGGGTTTA+TGG | 0.166513 | tig0020645:-94100 | None:intergenic |
| AAAGGGAGGGTTTCAATTTC+AGG | 0.186091 | tig0020645:-94237 | None:intergenic |
| TTCACCAAACAATGGGATTA+TGG | 0.189862 | tig0020645:+92972 | Msa1384200:CDS |
| CTGTTATTGCTGCTGCTAAT+TGG | 0.280712 | tig0020645:+93259 | Msa1384200:CDS |
| CAAATTTAATTAGCATAATC+TGG | 0.300562 | tig0020645:-94420 | None:intergenic |
| TTTGCATAAGCTGAAGAATA+TGG | 0.309877 | tig0020645:-94144 | None:intergenic |
| TCTTCCATGATTTCTTCATT+TGG | 0.323131 | tig0020645:-94186 | None:intergenic |
| CTCTGAATCTGTTCTGCACT+TGG | 0.338799 | tig0020645:-93084 | None:intergenic |
| TATGAACAAGGACAAGAAAA+TGG | 0.342235 | tig0020645:+94210 | Msa1384200:CDS |
| ATTCTTATCTGATCTGTTGT+TGG | 0.355808 | tig0020645:-93024 | None:intergenic |
| CAGATTGGTAACTATGGATA+TGG | 0.369373 | tig0020645:+93512 | Msa1384200:CDS |
| AAATCAAATTCATCTAACTA+TGG | 0.374371 | tig0020645:+94306 | Msa1384200:CDS |
| TCAGCATGCATAGGGAATAA+AGG | 0.383868 | tig0020645:-94255 | None:intergenic |
| TCACCAAACAATGGGATTAT+GGG | 0.391816 | tig0020645:+92973 | Msa1384200:CDS |
| GCAATAACAGTATTGTTGTT+TGG | 0.399113 | tig0020645:-93246 | None:intergenic |
| GTAGGCCAGATTGGTAACTA+TGG | 0.413013 | tig0020645:+93506 | Msa1384200:CDS |
| TCTGCTAGGTTAAGACAGTA+TGG | 0.419676 | tig0020645:+93111 | Msa1384200:CDS |
| TGTTGTTGTTCATGTTGATC+AGG | 0.421893 | tig0020645:-93285 | None:intergenic |
| GCCTCAACTCTTACGGTTGT+AGG | 0.423475 | tig0020645:+94394 | Msa1384200:CDS |
| AATTACAACATTTCATCTGC+TGG | 0.424173 | tig0020645:+93339 | Msa1384200:CDS |
| TGGTTCTCGTACTACTTCCT+TGG | 0.429314 | tig0020645:+94365 | Msa1384200:CDS |
| ATGAAATGTTGTAATTAGAA+TGG | 0.431892 | tig0020645:-93332 | None:intergenic |
| CAGCATGCATAGGGAATAAA+GGG | 0.436158 | tig0020645:-94254 | None:intergenic |
| CTAGAGAAAGACAGAAGAAA+AGG | 0.441919 | tig0020645:+93181 | Msa1384200:CDS |
| GTTTGGTGCTCTTTGAATGA+TGG | 0.443486 | tig0020645:-93229 | None:intergenic |
| CTGCCCATAATCCCATTGTT+TGG | 0.443872 | tig0020645:-92976 | None:intergenic |
| AACAACATTCACCAAACAAT+GGG | 0.452239 | tig0020645:+92965 | Msa1384200:CDS |
| CATATCCATAGTTACCAATC+TGG | 0.452599 | tig0020645:-93511 | None:intergenic |
| TTTGGTGCTCTTTGAATGAT+GGG | 0.453249 | tig0020645:-93228 | None:intergenic |
| GAACTTAGCCTCAACTCTTA+CGG | 0.457853 | tig0020645:+94387 | Msa1384200:CDS |
| AAGACCAAATGAAGAAATCA+TGG | 0.463541 | tig0020645:+94182 | Msa1384200:CDS |
| ATGGTTACTGTAGGCCAGAT+TGG | 0.471455 | tig0020645:+93497 | Msa1384200:CDS |
| AGTTAGATGAATTTGATTTG+AGG | 0.476215 | tig0020645:-94302 | None:intergenic |
| TGTTGTGTCTGCTGCTGTTG+TGG | 0.480611 | tig0020645:-92946 | None:intergenic |
| AGATCAGATAAGAATATTGA+AGG | 0.488670 | tig0020645:+93032 | Msa1384200:CDS |
| TTCATGTTCTTCTGCTGAGA+TGG | 0.491391 | tig0020645:+93478 | Msa1384200:CDS |
| AACCCTCACTTAGGATGGAT+TGG | 0.497436 | tig0020645:+94105 | Msa1384200:CDS |
| AAGGATCTTTACTACAACAA+TGG | 0.504008 | tig0020645:+93051 | Msa1384200:CDS |
| AGACAGTATGGTAAGATTGA+AGG | 0.507784 | tig0020645:+93123 | Msa1384200:CDS |
| GGATGTAGCAGTAGTCAAGT+TGG | 0.507987 | tig0020645:+94072 | Msa1384200:CDS |
| TAGGAGTGCACAATATCAGC+TGG | 0.529304 | tig0020645:+94051 | Msa1384200:intron |
| ATGCATGCTGAAGACATTCA+TGG | 0.531289 | tig0020645:+94267 | Msa1384200:CDS |
| TGGTATCAAGCTGAAGATGC+AGG | 0.538672 | tig0020645:+94333 | Msa1384200:CDS |
| CCATAAACCCTCACTTAGGA+TGG | 0.538741 | tig0020645:+94100 | Msa1384200:CDS |
| GAAGATGCAGGATTCATGTA+TGG | 0.540471 | tig0020645:+94345 | Msa1384200:CDS |
| TGTTGTGGTTGTTGTTGTTG+AGG | 0.541096 | tig0020645:-92931 | None:intergenic |
| GAATGTCTTCAGCATGCATA+GGG | 0.542541 | tig0020645:-94263 | None:intergenic |
| CAACAACATTCACCAAACAA+TGG | 0.552485 | tig0020645:+92964 | Msa1384200:CDS |
| AATATGGATCAACATGATGA+TGG | 0.557603 | tig0020645:-94128 | None:intergenic |
| AGAGTTGAGGCTAAGTTCCA+AGG | 0.568194 | tig0020645:-94382 | None:intergenic |
| TGAATGTCTTCAGCATGCAT+AGG | 0.569037 | tig0020645:-94264 | None:intergenic |
| TCTGCTGAGATGGTTACTGT+AGG | 0.577564 | tig0020645:+93488 | Msa1384200:CDS |
| ATTCATCTAACTATGGTGGT+TGG | 0.584464 | tig0020645:+94313 | Msa1384200:CDS |
| TCAAATTCATCTAACTATGG+TGG | 0.598577 | tig0020645:+94309 | Msa1384200:CDS |
| AGTACCATAAACCCTCACTT+AGG | 0.599826 | tig0020645:+94096 | Msa1384200:CDS |
| TGGATATGGATCTGTCCCAA+TGG | 0.601538 | tig0020645:+93526 | Msa1384200:CDS |
| AGATTCAGAGAATCTCTGCT+AGG | 0.608727 | tig0020645:+93097 | Msa1384200:CDS |
| ACCTACAACCGTAAGAGTTG+AGG | 0.617544 | tig0020645:-94395 | None:intergenic |
| GGCCAATCCATCCTAAGTGA+GGG | 0.618647 | tig0020645:-94107 | None:intergenic |
| GCAGCAGACAAAGTAGTACA+AGG | 0.645018 | tig0020645:+92995 | Msa1384200:CDS |
| TGGCCAATCCATCCTAAGTG+AGG | 0.646941 | tig0020645:-94108 | None:intergenic |
| CATGCATAGGGAATAAAGGG+AGG | 0.658861 | tig0020645:-94251 | None:intergenic |
| ATGCATAGGGAATAAAGGGA+GGG | 0.659824 | tig0020645:-94250 | None:intergenic |
| ATCATGGAAGAATATGAACA+AGG | 0.690834 | tig0020645:+94198 | Msa1384200:CDS |
| GCAGACAAAGTAGTACAAGG+TGG | 0.749876 | tig0020645:+92998 | Msa1384200:CDS |
| CATGCTGAAGACATTCATGG+TGG | 0.790217 | tig0020645:+94270 | Msa1384200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGATATGAAAATATTAAA+GGG | - | tig0020645:93612-93631 | None:intergenic | 10.0% |
| !!! | AATTTAAGTTTTGATTTTTT+TGG | + | tig0020645:94019-94038 | Msa1384200:intron | 10.0% |
| !! | ATAGATATGAAAATATTAAA+GGG | - | tig0020645:93612-93631 | None:intergenic | 10.0% |
| !!! | AATTTAAGTTTTGATTTTTT+TGG | + | tig0020645:94019-94038 | Msa1384200:intron | 10.0% |
| !!! | TTTTTTTTCTTGTATCAAAA+AGG | - | tig0020645:93379-93398 | None:intergenic | 15.0% |
| !! | CATAGATATGAAAATATTAA+AGG | - | tig0020645:93613-93632 | None:intergenic | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | + | tig0020645:93748-93767 | Msa1384200:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | - | tig0020645:93808-93827 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | + | tig0020645:93932-93951 | Msa1384200:intron | 15.0% |
| !!! | TTTTTTTTCTTGTATCAAAA+AGG | - | tig0020645:93379-93398 | None:intergenic | 15.0% |
| !! | CATAGATATGAAAATATTAA+AGG | - | tig0020645:93613-93632 | None:intergenic | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | + | tig0020645:93748-93767 | Msa1384200:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | - | tig0020645:93808-93827 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | + | tig0020645:93932-93951 | Msa1384200:intron | 15.0% |
| !! | ATGAAATGTTGTAATTAGAA+TGG | - | tig0020645:93335-93354 | None:intergenic | 20.0% |
| !!! | TTCTTATTATGGAAATTTTC+TGG | - | tig0020645:93779-93798 | None:intergenic | 20.0% |
| !! | AAATCAAATTCATCTAACTA+TGG | + | tig0020645:94306-94325 | Msa1384200:CDS | 20.0% |
| !! | ATGAAATGTTGTAATTAGAA+TGG | - | tig0020645:93335-93354 | None:intergenic | 20.0% |
| !!! | TTCTTATTATGGAAATTTTC+TGG | - | tig0020645:93779-93798 | None:intergenic | 20.0% |
| !! | AAATCAAATTCATCTAACTA+TGG | + | tig0020645:94306-94325 | Msa1384200:CDS | 20.0% |
| ! | AGATCAGATAAGAATATTGA+AGG | + | tig0020645:93032-93051 | Msa1384200:CDS | 25.0% |
| !! | AAGGCAAAAATGTCTTTTAT+TGG | + | tig0020645:93142-93161 | Msa1384200:CDS | 25.0% |
| ! | ACACACACAAAAATTAATGT+AGG | - | tig0020645:93435-93454 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGGTCTTCTTCTT+AGG | + | tig0020645:94032-94051 | Msa1384200:intron | 25.0% |
| !!! | AGTTAGATGAATTTGATTTG+AGG | - | tig0020645:94305-94324 | None:intergenic | 25.0% |
| ! | AGATCAGATAAGAATATTGA+AGG | + | tig0020645:93032-93051 | Msa1384200:CDS | 25.0% |
| !! | AAGGCAAAAATGTCTTTTAT+TGG | + | tig0020645:93142-93161 | Msa1384200:CDS | 25.0% |
| ! | ACACACACAAAAATTAATGT+AGG | - | tig0020645:93435-93454 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGGTCTTCTTCTT+AGG | + | tig0020645:94032-94051 | Msa1384200:intron | 25.0% |
| !!! | AGTTAGATGAATTTGATTTG+AGG | - | tig0020645:94305-94324 | None:intergenic | 25.0% |
| AACAACATTCACCAAACAAT+GGG | + | tig0020645:92965-92984 | Msa1384200:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | - | tig0020645:93027-93046 | None:intergenic | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | + | tig0020645:93051-93070 | Msa1384200:CDS | 30.0% | |
| ! | GCAATAACAGTATTGTTGTT+TGG | - | tig0020645:93249-93268 | None:intergenic | 30.0% |
| AATTACAACATTTCATCTGC+TGG | + | tig0020645:93339-93358 | Msa1384200:CDS | 30.0% | |
| ! | TTTTGTGTGTGTGTTTATGT+AGG | + | tig0020645:93443-93462 | Msa1384200:intron | 30.0% |
| TTTGTGTGTGTGTTTATGTA+GGG | + | tig0020645:93444-93463 | Msa1384200:intron | 30.0% | |
| ! | AATTTTCTGGATTGTCCTTT+TGG | - | tig0020645:93766-93785 | None:intergenic | 30.0% |
| TGAGGTTGTTCTTCTTATTA+TGG | - | tig0020645:93790-93809 | None:intergenic | 30.0% | |
| AATATGGATCAACATGATGA+TGG | - | tig0020645:94131-94150 | None:intergenic | 30.0% | |
| TTTGCATAAGCTGAAGAATA+TGG | - | tig0020645:94147-94166 | None:intergenic | 30.0% | |
| AAGACCAAATGAAGAAATCA+TGG | + | tig0020645:94182-94201 | Msa1384200:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+TGG | - | tig0020645:94189-94208 | None:intergenic | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | + | tig0020645:94198-94217 | Msa1384200:CDS | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | + | tig0020645:94210-94229 | Msa1384200:CDS | 30.0% | |
| TCAAATTCATCTAACTATGG+TGG | + | tig0020645:94309-94328 | Msa1384200:CDS | 30.0% | |
| AACAACATTCACCAAACAAT+GGG | + | tig0020645:92965-92984 | Msa1384200:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | - | tig0020645:93027-93046 | None:intergenic | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | + | tig0020645:93051-93070 | Msa1384200:CDS | 30.0% | |
| ! | GCAATAACAGTATTGTTGTT+TGG | - | tig0020645:93249-93268 | None:intergenic | 30.0% |
| AATTACAACATTTCATCTGC+TGG | + | tig0020645:93339-93358 | Msa1384200:CDS | 30.0% | |
| ! | TTTTGTGTGTGTGTTTATGT+AGG | + | tig0020645:93443-93462 | Msa1384200:intron | 30.0% |
| TTTGTGTGTGTGTTTATGTA+GGG | + | tig0020645:93444-93463 | Msa1384200:intron | 30.0% | |
| ! | AATTTTCTGGATTGTCCTTT+TGG | - | tig0020645:93766-93785 | None:intergenic | 30.0% |
| TGAGGTTGTTCTTCTTATTA+TGG | - | tig0020645:93790-93809 | None:intergenic | 30.0% | |
| AATATGGATCAACATGATGA+TGG | - | tig0020645:94131-94150 | None:intergenic | 30.0% | |
| TTTGCATAAGCTGAAGAATA+TGG | - | tig0020645:94147-94166 | None:intergenic | 30.0% | |
| AAGACCAAATGAAGAAATCA+TGG | + | tig0020645:94182-94201 | Msa1384200:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+TGG | - | tig0020645:94189-94208 | None:intergenic | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | + | tig0020645:94198-94217 | Msa1384200:CDS | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | + | tig0020645:94210-94229 | Msa1384200:CDS | 30.0% | |
| TCAAATTCATCTAACTATGG+TGG | + | tig0020645:94309-94328 | Msa1384200:CDS | 30.0% | |
| CAACAACATTCACCAAACAA+TGG | + | tig0020645:92964-92983 | Msa1384200:CDS | 35.0% | |
| TTCACCAAACAATGGGATTA+TGG | + | tig0020645:92972-92991 | Msa1384200:CDS | 35.0% | |
| TCACCAAACAATGGGATTAT+GGG | + | tig0020645:92973-92992 | Msa1384200:CDS | 35.0% | |
| AGACAGTATGGTAAGATTGA+AGG | + | tig0020645:93123-93142 | Msa1384200:CDS | 35.0% | |
| CTAGAGAAAGACAGAAGAAA+AGG | + | tig0020645:93181-93200 | Msa1384200:CDS | 35.0% | |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | - | tig0020645:93231-93250 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTCATGTTGATC+AGG | - | tig0020645:93288-93307 | None:intergenic | 35.0% |
| CATATCCATAGTTACCAATC+TGG | - | tig0020645:93514-93533 | None:intergenic | 35.0% | |
| ! | CAGATTGGTAACTATGGATA+TGG | + | tig0020645:93512-93531 | Msa1384200:CDS | 35.0% |
| ! | TCCCAATGGAAAAGAGTTTT+AGG | + | tig0020645:93540-93559 | Msa1384200:CDS | 35.0% |
| ! | CCCTAAAACTCTTTTCCATT+GGG | - | tig0020645:93544-93563 | None:intergenic | 35.0% |
| ! | CCCAATGGAAAAGAGTTTTA+GGG | + | tig0020645:93541-93560 | Msa1384200:CDS | 35.0% |
| ! | ACCCTAAAACTCTTTTCCAT+TGG | - | tig0020645:93545-93564 | None:intergenic | 35.0% |
| GCTACATACACATTAGACAA+AGG | - | tig0020645:93644-93663 | None:intergenic | 35.0% | |
| ATTCAATCCATGATCCATCA+TGG | + | tig0020645:93674-93693 | Msa1384200:intron | 35.0% | |
| CTTGTGTATCAAATCTCACA+TGG | - | tig0020645:93709-93728 | None:intergenic | 35.0% | |
| TAGTGAAACTGAACTCTTGT+TGG | - | tig0020645:93877-93896 | None:intergenic | 35.0% | |
| ATTCATCTAACTATGGTGGT+TGG | + | tig0020645:94313-94332 | Msa1384200:CDS | 35.0% | |
| CAACAACATTCACCAAACAA+TGG | + | tig0020645:92964-92983 | Msa1384200:CDS | 35.0% | |
| TTCACCAAACAATGGGATTA+TGG | + | tig0020645:92972-92991 | Msa1384200:CDS | 35.0% | |
| TCACCAAACAATGGGATTAT+GGG | + | tig0020645:92973-92992 | Msa1384200:CDS | 35.0% | |
| AGACAGTATGGTAAGATTGA+AGG | + | tig0020645:93123-93142 | Msa1384200:CDS | 35.0% | |
| CTAGAGAAAGACAGAAGAAA+AGG | + | tig0020645:93181-93200 | Msa1384200:CDS | 35.0% | |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | - | tig0020645:93231-93250 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTCATGTTGATC+AGG | - | tig0020645:93288-93307 | None:intergenic | 35.0% |
| CATATCCATAGTTACCAATC+TGG | - | tig0020645:93514-93533 | None:intergenic | 35.0% | |
| ! | CAGATTGGTAACTATGGATA+TGG | + | tig0020645:93512-93531 | Msa1384200:CDS | 35.0% |
| ! | TCCCAATGGAAAAGAGTTTT+AGG | + | tig0020645:93540-93559 | Msa1384200:CDS | 35.0% |
| ! | CCCTAAAACTCTTTTCCATT+GGG | - | tig0020645:93544-93563 | None:intergenic | 35.0% |
| ! | CCCAATGGAAAAGAGTTTTA+GGG | + | tig0020645:93541-93560 | Msa1384200:CDS | 35.0% |
| ! | ACCCTAAAACTCTTTTCCAT+TGG | - | tig0020645:93545-93564 | None:intergenic | 35.0% |
| GCTACATACACATTAGACAA+AGG | - | tig0020645:93644-93663 | None:intergenic | 35.0% | |
| ATTCAATCCATGATCCATCA+TGG | + | tig0020645:93674-93693 | Msa1384200:intron | 35.0% | |
| CTTGTGTATCAAATCTCACA+TGG | - | tig0020645:93709-93728 | None:intergenic | 35.0% | |
| TAGTGAAACTGAACTCTTGT+TGG | - | tig0020645:93877-93896 | None:intergenic | 35.0% | |
| ATTCATCTAACTATGGTGGT+TGG | + | tig0020645:94313-94332 | Msa1384200:CDS | 35.0% | |
| ! | TGTTGTGGTTGTTGTTGTTG+AGG | - | tig0020645:92934-92953 | None:intergenic | 40.0% |
| AGATTCAGAGAATCTCTGCT+AGG | + | tig0020645:93097-93116 | Msa1384200:CDS | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | + | tig0020645:93111-93130 | Msa1384200:CDS | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | - | tig0020645:93232-93251 | None:intergenic | 40.0% |
| CTGTTATTGCTGCTGCTAAT+TGG | + | tig0020645:93259-93278 | Msa1384200:CDS | 40.0% | |
| TTCATGTTCTTCTGCTGAGA+TGG | + | tig0020645:93478-93497 | Msa1384200:CDS | 40.0% | |
| TGAAACTGAACTCTTGTTGG+TGG | - | tig0020645:93874-93893 | None:intergenic | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | + | tig0020645:94096-94115 | Msa1384200:CDS | 40.0% | |
| AAAGGGAGGGTTTCAATTTC+AGG | - | tig0020645:94240-94259 | None:intergenic | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | - | tig0020645:94253-94272 | None:intergenic | 40.0% | |
| CAGCATGCATAGGGAATAAA+GGG | - | tig0020645:94257-94276 | None:intergenic | 40.0% | |
| TCAGCATGCATAGGGAATAA+AGG | - | tig0020645:94258-94277 | None:intergenic | 40.0% | |
| GAATGTCTTCAGCATGCATA+GGG | - | tig0020645:94266-94285 | None:intergenic | 40.0% | |
| TGAATGTCTTCAGCATGCAT+AGG | - | tig0020645:94267-94286 | None:intergenic | 40.0% | |
| ATGCATGCTGAAGACATTCA+TGG | + | tig0020645:94267-94286 | Msa1384200:CDS | 40.0% | |
| GAAGATGCAGGATTCATGTA+TGG | + | tig0020645:94345-94364 | Msa1384200:CDS | 40.0% | |
| GAACTTAGCCTCAACTCTTA+CGG | + | tig0020645:94387-94406 | Msa1384200:CDS | 40.0% | |
| ! | TGTTGTGGTTGTTGTTGTTG+AGG | - | tig0020645:92934-92953 | None:intergenic | 40.0% |
| AGATTCAGAGAATCTCTGCT+AGG | + | tig0020645:93097-93116 | Msa1384200:CDS | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | + | tig0020645:93111-93130 | Msa1384200:CDS | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | - | tig0020645:93232-93251 | None:intergenic | 40.0% |
| CTGTTATTGCTGCTGCTAAT+TGG | + | tig0020645:93259-93278 | Msa1384200:CDS | 40.0% | |
| TTCATGTTCTTCTGCTGAGA+TGG | + | tig0020645:93478-93497 | Msa1384200:CDS | 40.0% | |
| TGAAACTGAACTCTTGTTGG+TGG | - | tig0020645:93874-93893 | None:intergenic | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | + | tig0020645:94096-94115 | Msa1384200:CDS | 40.0% | |
| AAAGGGAGGGTTTCAATTTC+AGG | - | tig0020645:94240-94259 | None:intergenic | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | - | tig0020645:94253-94272 | None:intergenic | 40.0% | |
| CAGCATGCATAGGGAATAAA+GGG | - | tig0020645:94257-94276 | None:intergenic | 40.0% | |
| TCAGCATGCATAGGGAATAA+AGG | - | tig0020645:94258-94277 | None:intergenic | 40.0% | |
| GAATGTCTTCAGCATGCATA+GGG | - | tig0020645:94266-94285 | None:intergenic | 40.0% | |
| TGAATGTCTTCAGCATGCAT+AGG | - | tig0020645:94267-94286 | None:intergenic | 40.0% | |
| ATGCATGCTGAAGACATTCA+TGG | + | tig0020645:94267-94286 | Msa1384200:CDS | 40.0% | |
| GAAGATGCAGGATTCATGTA+TGG | + | tig0020645:94345-94364 | Msa1384200:CDS | 40.0% | |
| GAACTTAGCCTCAACTCTTA+CGG | + | tig0020645:94387-94406 | Msa1384200:CDS | 40.0% | |
| CTGCCCATAATCCCATTGTT+TGG | - | tig0020645:92979-92998 | None:intergenic | 45.0% | |
| GCAGCAGACAAAGTAGTACA+AGG | + | tig0020645:92995-93014 | Msa1384200:CDS | 45.0% | |
| GCAGACAAAGTAGTACAAGG+TGG | + | tig0020645:92998-93017 | Msa1384200:CDS | 45.0% | |
| CTCTGAATCTGTTCTGCACT+TGG | - | tig0020645:93087-93106 | None:intergenic | 45.0% | |
| TCTGCTGAGATGGTTACTGT+AGG | + | tig0020645:93488-93507 | Msa1384200:CDS | 45.0% | |
| ATGGTTACTGTAGGCCAGAT+TGG | + | tig0020645:93497-93516 | Msa1384200:CDS | 45.0% | |
| ! | GTAGGCCAGATTGGTAACTA+TGG | + | tig0020645:93506-93525 | Msa1384200:CDS | 45.0% |
| TGGATATGGATCTGTCCCAA+TGG | + | tig0020645:93526-93545 | Msa1384200:CDS | 45.0% | |
| !! | GCATGAACCATGATGGATCA+TGG | - | tig0020645:93684-93703 | None:intergenic | 45.0% |
| CATGGATGCATGAACCATGA+TGG | - | tig0020645:93691-93710 | None:intergenic | 45.0% | |
| ! | TAGGAGTGCACAATATCAGC+TGG | + | tig0020645:94051-94070 | Msa1384200:intron | 45.0% |
| GGATGTAGCAGTAGTCAAGT+TGG | + | tig0020645:94072-94091 | Msa1384200:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | - | tig0020645:94103-94122 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | + | tig0020645:94100-94119 | Msa1384200:CDS | 45.0% | |
| AACCCTCACTTAGGATGGAT+TGG | + | tig0020645:94105-94124 | Msa1384200:CDS | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | - | tig0020645:94254-94273 | None:intergenic | 45.0% | |
| CATGCTGAAGACATTCATGG+TGG | + | tig0020645:94270-94289 | Msa1384200:CDS | 45.0% | |
| TGGTATCAAGCTGAAGATGC+AGG | + | tig0020645:94333-94352 | Msa1384200:CDS | 45.0% | |
| TGGTTCTCGTACTACTTCCT+TGG | + | tig0020645:94365-94384 | Msa1384200:CDS | 45.0% | |
| AGAGTTGAGGCTAAGTTCCA+AGG | - | tig0020645:94385-94404 | None:intergenic | 45.0% | |
| ACCTACAACCGTAAGAGTTG+AGG | - | tig0020645:94398-94417 | None:intergenic | 45.0% | |
| CTGCCCATAATCCCATTGTT+TGG | - | tig0020645:92979-92998 | None:intergenic | 45.0% | |
| GCAGCAGACAAAGTAGTACA+AGG | + | tig0020645:92995-93014 | Msa1384200:CDS | 45.0% | |
| GCAGACAAAGTAGTACAAGG+TGG | + | tig0020645:92998-93017 | Msa1384200:CDS | 45.0% | |
| CTCTGAATCTGTTCTGCACT+TGG | - | tig0020645:93087-93106 | None:intergenic | 45.0% | |
| TCTGCTGAGATGGTTACTGT+AGG | + | tig0020645:93488-93507 | Msa1384200:CDS | 45.0% | |
| ATGGTTACTGTAGGCCAGAT+TGG | + | tig0020645:93497-93516 | Msa1384200:CDS | 45.0% | |
| ! | GTAGGCCAGATTGGTAACTA+TGG | + | tig0020645:93506-93525 | Msa1384200:CDS | 45.0% |
| TGGATATGGATCTGTCCCAA+TGG | + | tig0020645:93526-93545 | Msa1384200:CDS | 45.0% | |
| !! | GCATGAACCATGATGGATCA+TGG | - | tig0020645:93684-93703 | None:intergenic | 45.0% |
| CATGGATGCATGAACCATGA+TGG | - | tig0020645:93691-93710 | None:intergenic | 45.0% | |
| ! | TAGGAGTGCACAATATCAGC+TGG | + | tig0020645:94051-94070 | Msa1384200:intron | 45.0% |
| GGATGTAGCAGTAGTCAAGT+TGG | + | tig0020645:94072-94091 | Msa1384200:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | - | tig0020645:94103-94122 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | + | tig0020645:94100-94119 | Msa1384200:CDS | 45.0% | |
| AACCCTCACTTAGGATGGAT+TGG | + | tig0020645:94105-94124 | Msa1384200:CDS | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | - | tig0020645:94254-94273 | None:intergenic | 45.0% | |
| CATGCTGAAGACATTCATGG+TGG | + | tig0020645:94270-94289 | Msa1384200:CDS | 45.0% | |
| TGGTATCAAGCTGAAGATGC+AGG | + | tig0020645:94333-94352 | Msa1384200:CDS | 45.0% | |
| TGGTTCTCGTACTACTTCCT+TGG | + | tig0020645:94365-94384 | Msa1384200:CDS | 45.0% | |
| AGAGTTGAGGCTAAGTTCCA+AGG | - | tig0020645:94385-94404 | None:intergenic | 45.0% | |
| ACCTACAACCGTAAGAGTTG+AGG | - | tig0020645:94398-94417 | None:intergenic | 45.0% | |
| !! | AACTTAAATTAAAATTAAAA+TGG | - | tig0020645:94009-94028 | None:intergenic | 5.0% |
| !! | AACTTAAATTAAAATTAAAA+TGG | - | tig0020645:94009-94028 | None:intergenic | 5.0% |
| TGTTGTGTCTGCTGCTGTTG+TGG | - | tig0020645:92949-92968 | None:intergenic | 50.0% | |
| GGCCAATCCATCCTAAGTGA+GGG | - | tig0020645:94110-94129 | None:intergenic | 50.0% | |
| TGGCCAATCCATCCTAAGTG+AGG | - | tig0020645:94111-94130 | None:intergenic | 50.0% | |
| GCCTCAACTCTTACGGTTGT+AGG | + | tig0020645:94394-94413 | Msa1384200:CDS | 50.0% | |
| TGTTGTGTCTGCTGCTGTTG+TGG | - | tig0020645:92949-92968 | None:intergenic | 50.0% | |
| GGCCAATCCATCCTAAGTGA+GGG | - | tig0020645:94110-94129 | None:intergenic | 50.0% | |
| TGGCCAATCCATCCTAAGTG+AGG | - | tig0020645:94111-94130 | None:intergenic | 50.0% | |
| GCCTCAACTCTTACGGTTGT+AGG | + | tig0020645:94394-94413 | Msa1384200:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020645 | gene | 92922 | 94437 | 92922 | ID=Msa1384200;Name=Msa1384200 |
| tig0020645 | mRNA | 92922 | 94437 | 92922 | ID=Msa1384200-mRNA-1;Parent=Msa1384200;Name=Msa1384200-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|306 |
| tig0020645 | exon | 92922 | 93360 | 92922 | ID=Msa1384200-mRNA-1:exon:8952;Parent=Msa1384200-mRNA-1 |
| tig0020645 | exon | 93465 | 93562 | 93465 | ID=Msa1384200-mRNA-1:exon:8953;Parent=Msa1384200-mRNA-1 |
| tig0020645 | exon | 94054 | 94437 | 94054 | ID=Msa1384200-mRNA-1:exon:8954;Parent=Msa1384200-mRNA-1 |
| tig0020645 | CDS | 92922 | 93360 | 92922 | ID=Msa1384200-mRNA-1:cds;Parent=Msa1384200-mRNA-1 |
| tig0020645 | CDS | 93465 | 93562 | 93465 | ID=Msa1384200-mRNA-1:cds;Parent=Msa1384200-mRNA-1 |
| tig0020645 | CDS | 94054 | 94437 | 94054 | ID=Msa1384200-mRNA-1:cds;Parent=Msa1384200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
