AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1384900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384900 MtrunA17_Chr3g0131181 96.111 180 7 0 1 180 1 180 2.39e-116 341
Msa1384900 MtrunA17_Chr8g0385341 74.586 181 45 1 1 180 1 181 7.98e-96 288
Msa1384900 MtrunA17_Chr1g0200601 71.271 181 51 1 1 180 1 181 2.64e-88 268
Msa1384900 MtrunA17_Chr1g0170281 68.293 164 52 0 17 180 106 269 3.21e-76 239
Msa1384900 MtrunA17_Chr5g0448721 63.128 179 65 1 3 180 69 247 1.63e-72 229
Msa1384900 MtrunA17_Chr1g0176421 64.634 164 58 0 17 180 149 312 2.93e-71 228
Msa1384900 MtrunA17_Chr5g0441691 54.737 190 83 1 2 188 38 227 9.73e-71 224
Msa1384900 MtrunA17_Chr3g0098951 56.383 188 76 1 2 183 51 238 2.25e-69 221
Msa1384900 MtrunA17_Chr1g0176751 64.848 165 56 1 17 179 112 276 5.32e-69 221
Msa1384900 MtrunA17_Chr4g0074811 54.922 193 76 2 2 183 53 245 2.00e-68 218
Msa1384900 MtrunA17_Chr5g0444171 55.914 186 75 1 5 183 61 246 2.27e-68 218
Msa1384900 MtrunA17_Chr0c02g0489761 55.618 178 76 1 11 185 57 234 2.59e-66 213
Msa1384900 MtrunA17_Chr5g0444181 57.764 161 68 0 23 183 85 245 5.69e-66 204
Msa1384900 MtrunA17_Chr7g0267751 57.297 185 71 1 25 209 131 307 1.79e-63 207
Msa1384900 MtrunA17_Chr8g0387671 57.317 164 70 0 17 180 54 217 2.52e-62 202
Msa1384900 MtrunA17_Chr1g0157131 55.758 165 71 1 19 183 66 228 8.41e-62 201
Msa1384900 MtrunA17_Chr4g0059951 62.025 158 60 0 29 186 73 230 2.06e-61 200
Msa1384900 MtrunA17_Chr7g0257751 60.127 158 63 0 29 186 58 215 1.16e-59 195
Msa1384900 MtrunA17_Chr1g0173541 62.838 148 55 0 29 176 52 199 1.51e-59 195
Msa1384900 MtrunA17_Chr7g0267771 58.896 163 67 0 24 186 83 245 1.09e-58 191
Msa1384900 MtrunA17_Chr5g0397101 56.111 180 77 1 3 180 39 218 2.31e-58 191
Msa1384900 MtrunA17_Chr4g0033371 52.222 180 75 1 7 186 61 229 7.03e-57 188
Msa1384900 MtrunA17_Chr7g0242561 49.189 185 94 0 2 186 29 213 8.68e-57 187
Msa1384900 MtrunA17_Chr4g0074791 47.692 195 87 2 4 183 56 250 2.54e-55 184
Msa1384900 MtrunA17_Chr1g0203881 45.161 155 85 0 22 176 34 188 7.14e-40 142
Msa1384900 MtrunA17_Chr5g0405421 43.125 160 89 1 29 186 99 258 9.39e-38 137
Msa1384900 MtrunA17_Chr5g0402551 43.902 164 84 3 29 186 134 295 2.49e-36 134
Msa1384900 MtrunA17_Chr3g0127571 42.857 168 92 2 23 186 132 299 3.39e-36 133
Msa1384900 MtrunA17_Chr7g0276111 42.105 171 91 3 22 186 137 305 4.83e-35 130
Msa1384900 MtrunA17_Chr8g0374701 43.114 167 84 3 29 186 125 289 1.04e-34 129
Msa1384900 MtrunA17_Chr7g0256001 42.073 164 87 3 29 186 141 302 1.88e-33 125
Msa1384900 MtrunA17_Chr4g0045261 41.875 160 89 2 31 186 139 298 1.05e-32 124
Msa1384900 MtrunA17_Chr3g0132591 41.985 131 69 1 29 159 112 235 7.64e-32 120
Msa1384900 MtrunA17_Chr5g0432491 39.429 175 97 4 29 200 23 191 3.62e-30 115
Msa1384900 MtrunA17_Chr4g0074111 38.994 159 92 3 29 187 18 171 1.08e-29 113
Msa1384900 MtrunA17_Chr3g0107011 37.423 163 97 3 25 187 10 167 2.01e-29 113
Msa1384900 MtrunA17_Chr5g0441011 37.500 176 101 5 28 200 12 181 5.63e-29 112
Msa1384900 MtrunA17_Chr1g0190131 38.312 154 91 2 23 176 3 152 1.42e-28 108
Msa1384900 MtrunA17_Chr1g0205421 37.572 173 102 4 29 200 12 179 1.57e-28 111
Msa1384900 MtrunA17_Chr2g0304111 37.714 175 100 4 29 200 23 191 2.04e-28 110
Msa1384900 MtrunA17_Chr4g0063881 35.484 155 96 2 29 183 11 161 2.48e-28 110
Msa1384900 MtrunA17_Chr8g0353621 34.302 172 105 3 29 200 10 173 2.59e-28 107
Msa1384900 MtrunA17_Chr8g0351491 34.302 172 105 3 29 200 16 179 1.57e-27 105
Msa1384900 MtrunA17_Chr5g0428031 37.662 154 90 3 25 176 3 152 2.88e-27 107
Msa1384900 MtrunA17_Chr5g0432471 36.313 179 104 5 25 200 8 179 3.02e-27 107
Msa1384900 MtrunA17_Chr4g0001331 37.143 175 100 5 29 200 20 187 3.89e-27 107
Msa1384900 MtrunA17_Chr7g0274941 36.232 138 86 2 26 162 13 149 6.15e-27 104
Msa1384900 MtrunA17_Chr7g0244521 37.430 179 102 5 25 200 8 179 1.67e-26 105
Msa1384900 MtrunA17_Chr8g0355131 50.000 104 48 1 77 176 91 194 2.31e-26 105
Msa1384900 MtrunA17_Chr3g0107051 38.286 175 98 5 29 200 21 188 2.56e-26 105
Msa1384900 MtrunA17_Chr8g0346071 33.140 172 110 3 29 200 17 183 3.10e-25 102
Msa1384900 MtrunA17_Chr4g0013131 36.000 175 102 5 29 200 12 179 3.16e-25 102
Msa1384900 MtrunA17_Chr8g0346081 30.928 194 121 4 7 200 3 183 4.26e-25 101
Msa1384900 MtrunA17_Chr2g0284011 34.356 163 102 3 25 187 8 165 1.06e-24 100
Msa1384900 MtrunA17_Chr1g0197721 34.667 150 94 2 29 178 51 196 1.69e-24 100
Msa1384900 MtrunA17_Chr2g0302431 37.037 135 84 1 29 163 20 153 3.44e-24 99.4
Msa1384900 MtrunA17_Chr1g0188031 34.759 187 102 5 9 192 9 178 5.90e-24 98.2
Msa1384900 MtrunA17_Chr6g0453681 39.568 139 75 2 29 163 19 152 1.90e-23 97.4
Msa1384900 MtrunA17_Chr3g0114511 34.104 173 106 4 29 200 32 197 4.07e-23 96.3
Msa1384900 MtrunA17_Chr1g0150321 39.189 148 85 3 29 176 13 155 4.48e-23 95.9
Msa1384900 MtrunA17_Chr6g0468751 38.849 139 76 2 29 163 19 152 5.25e-23 96.3
Msa1384900 MtrunA17_Chr3g0140631 30.409 171 111 3 29 199 37 199 5.68e-23 94.0
Msa1384900 MtrunA17_Chr2g0333821 37.143 175 100 5 29 200 14 181 1.52e-22 94.4
Msa1384900 MtrunA17_Chr2g0284031 35.220 159 98 3 29 187 31 184 1.85e-22 94.7
Msa1384900 MtrunA17_Chr8g0379091 35.849 159 97 3 29 187 26 179 3.41e-22 94.0
Msa1384900 MtrunA17_Chr4g0069301 36.000 175 103 4 29 200 26 194 7.28e-22 92.4
Msa1384900 MtrunA17_Chr1g0166101 31.707 164 106 2 29 192 24 181 2.51e-21 90.9
Msa1384900 MtrunA17_Chr4g0008561 30.233 172 116 3 29 200 19 186 1.27e-20 89.4
Msa1384900 MtrunA17_Chr3g0132671 35.028 177 75 5 21 163 12 182 1.91e-20 89.0
Msa1384900 MtrunA17_Chr7g0244561 34.659 176 105 5 29 200 16 185 2.81e-20 87.8
Msa1384900 MtrunA17_Chr7g0245031 30.729 192 119 5 24 208 136 320 3.38e-20 87.8
Msa1384900 MtrunA17_Chr8g0345801 29.070 172 118 3 29 200 15 182 1.03e-19 84.7
Msa1384900 MtrunA17_Chr3g0125381 34.677 124 74 3 77 200 2 118 1.16e-19 83.6
Msa1384900 MtrunA17_Chr4g0055451 34.211 152 94 3 25 176 1 146 4.75e-19 84.0
Msa1384900 MtrunA17_Chr3g0091311 30.233 172 115 3 29 200 12 178 8.22e-19 82.0
Msa1384900 MtrunA17_Chr5g0402661 33.939 165 101 4 12 176 3 159 1.05e-18 83.2
Msa1384900 MtrunA17_Chr8g0374571 35.583 163 97 4 14 176 10 164 1.11e-18 83.2
Msa1384900 MtrunA17_Chr2g0277501 34.667 150 92 3 27 176 2 145 3.43e-18 81.6
Msa1384900 MtrunA17_Chr3g0123791 34.211 152 94 4 25 176 1 146 7.88e-18 80.5
Msa1384900 MtrunA17_Chr5g0399911 33.793 145 86 3 27 162 4 147 7.92e-18 80.5
Msa1384900 MtrunA17_Chr3g0091421 31.548 168 107 4 29 196 12 171 8.20e-18 79.0
Msa1384900 MtrunA17_Chr8g0381821 36.000 150 90 4 27 176 2 145 1.05e-17 80.1
Msa1384900 MtrunA17_Chr1g0162301 35.135 148 90 3 29 176 24 165 3.52e-17 79.0
Msa1384900 MtrunA17_Chr4g0045371 35.135 148 90 3 29 176 23 164 4.03e-17 78.6
Msa1384900 MtrunA17_Chr8g0385281 33.784 148 92 3 29 176 5 146 5.15e-17 78.2
Msa1384900 MtrunA17_Chr3g0091281 32.653 147 94 3 29 175 12 153 8.76e-17 76.3
Msa1384900 MtrunA17_Chr5g0426521 34.815 135 81 3 29 162 4 132 2.83e-16 76.3
Msa1384900 MtrunA17_Chr3g0131061 33.557 149 91 4 29 176 4 145 1.30e-15 74.3
Msa1384900 MtrunA17_Chr3g0129721 31.818 154 101 2 24 176 20 170 1.48e-15 73.6
Msa1384900 MtrunA17_Chr6g0453671 40.217 92 54 1 72 163 62 152 1.64e-15 74.3
Msa1384900 MtrunA17_Chr3g0091291 35.455 110 65 4 76 184 7 111 3.37e-15 71.2
Msa1384900 MtrunA17_Chr4g0018201 28.177 181 117 3 27 207 757 924 3.99e-15 73.6
Msa1384900 MtrunA17_Chr4g0059751 30.822 146 85 4 29 163 89 229 4.66e-15 73.2
Msa1384900 MtrunA17_Chr5g0428981 28.177 181 117 3 27 207 761 928 4.97e-15 73.6
Msa1384900 MtrunA17_Chr4g0072831 32.432 148 75 3 29 176 10 132 1.11e-14 71.2
Msa1384900 MtrunA17_Chr8g0380661 33.824 136 85 3 27 162 2 132 1.72e-14 70.9
Msa1384900 MtrunA17_Chr6g0478601 30.405 148 99 2 29 176 111 254 2.35e-14 71.2
Msa1384900 MtrunA17_Chr1g0167311 28.125 128 91 1 35 162 121 247 5.12e-14 70.1
Msa1384900 MtrunA17_Chr1g0187581 26.056 142 101 2 35 176 123 260 5.89e-14 70.1
Msa1384900 MtrunA17_Chr1g0167351 28.169 142 98 2 35 176 116 253 9.48e-14 69.3
Msa1384900 MtrunA17_Chr2g0299781 25.641 156 110 2 35 185 119 273 9.81e-14 69.3
Msa1384900 MtrunA17_Chr2g0286501 28.571 154 100 3 23 176 43 186 1.16e-13 69.3
Msa1384900 MtrunA17_Chr7g0261491 27.465 142 99 2 35 176 126 263 2.64e-13 68.2
Msa1384900 MtrunA17_Chr1g0183651 27.344 128 92 1 35 162 126 252 3.32e-13 67.8
Msa1384900 MtrunA17_Chr1g0153321 26.761 142 100 2 35 176 114 251 3.36e-13 67.8
Msa1384900 MtrunA17_Chr7g0227331 34.211 152 90 7 29 175 234 380 6.39e-13 67.0
Msa1384900 MtrunA17_Chr3g0135951 26.056 142 101 2 35 176 100 237 9.62e-13 66.6
Msa1384900 MtrunA17_Chr3g0131861 29.379 177 109 6 14 180 75 245 1.67e-12 65.9
Msa1384900 MtrunA17_Chr4g0038501 27.848 158 107 4 22 177 13 165 2.60e-12 65.5
Msa1384900 MtrunA17_Chr8g0385971 28.261 184 114 8 14 186 68 244 6.50e-12 63.9
Msa1384900 MtrunA17_Chr1g0201571 27.273 176 117 6 14 185 111 279 6.80e-12 63.9
Msa1384900 MtrunA17_Chr1g0170551 28.667 150 101 4 27 176 5 148 4.06e-11 62.0
Msa1384900 MtrunA17_Chr6g0479211 28.947 152 92 4 35 180 62 203 7.90e-11 60.5
Msa1384900 MtrunA17_Chr8g0358921 31.169 154 86 8 34 176 52 196 8.14e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384900 AT1G35670.1 71.429 175 49 1 7 180 3 177 1.71e-86 264
Msa1384900 AT5G23580.1 71.264 174 50 0 12 185 5 178 2.22e-85 261
Msa1384900 AT4G09570.1 71.098 173 49 1 9 180 4 176 3.62e-84 258
Msa1384900 AT3G10660.2 70.122 164 49 0 17 180 174 337 6.48e-78 246
Msa1384900 AT3G10660.1 70.122 164 49 0 17 180 174 337 6.48e-78 246
Msa1384900 AT5G04870.1 68.902 164 51 0 17 180 138 301 1.69e-76 241
Msa1384900 AT2G38910.1 65.854 164 56 0 17 180 122 285 2.61e-74 235
Msa1384900 AT4G38230.4 66.061 165 56 0 16 180 11 175 1.62e-72 228
Msa1384900 AT4G38230.3 66.061 165 56 0 16 180 11 175 1.62e-72 228
Msa1384900 AT4G38230.2 66.061 165 56 0 16 180 41 205 2.53e-72 228
Msa1384900 AT4G35310.2 65.455 165 57 0 16 180 84 248 5.68e-72 228
Msa1384900 AT4G35310.1 65.455 165 57 0 16 180 84 248 5.68e-72 228
Msa1384900 AT2G17290.1 66.061 165 56 0 16 180 72 236 1.23e-71 227
Msa1384900 AT2G17290.2 66.061 165 56 0 16 180 72 236 1.23e-71 227
Msa1384900 AT5G12180.1 55.376 186 77 1 1 180 39 224 3.29e-69 220
Msa1384900 AT3G20410.2 59.770 174 70 0 10 183 72 245 3.65e-69 221
Msa1384900 AT3G20410.1 59.770 174 70 0 10 183 72 245 3.65e-69 221
Msa1384900 AT4G04720.2 57.542 179 75 1 6 183 56 234 1.65e-68 219
Msa1384900 AT4G04720.1 57.542 179 75 1 6 183 56 234 1.65e-68 219
Msa1384900 AT5G19360.1 56.983 179 70 1 9 180 41 219 2.17e-68 218
Msa1384900 AT4G21940.3 61.491 161 62 0 23 183 96 256 2.75e-67 214
Msa1384900 AT1G61950.1 58.382 173 69 2 12 183 83 253 4.98e-67 215
Msa1384900 AT4G21940.1 61.491 161 62 0 23 183 96 256 9.01e-67 214
Msa1384900 AT4G21940.2 61.491 161 62 0 23 183 96 256 1.11e-66 214
Msa1384900 AT1G50700.3 55.851 188 75 1 4 183 40 227 1.86e-66 212
Msa1384900 AT1G50700.1 55.851 188 75 1 4 183 40 227 3.54e-66 212
Msa1384900 AT2G35890.2 62.195 164 62 0 17 180 120 283 3.69e-66 212
Msa1384900 AT2G35890.1 62.195 164 62 0 17 180 120 283 3.69e-66 212
Msa1384900 AT1G50700.2 55.851 188 75 1 4 183 40 227 7.91e-66 212
Msa1384900 AT3G57530.2 61.392 158 61 0 29 186 63 220 8.56e-63 201
Msa1384900 AT3G57530.1 61.392 158 61 0 29 186 63 220 8.96e-62 201
Msa1384900 AT5G12480.1 61.184 152 59 0 29 180 59 210 9.89e-62 201
Msa1384900 AT2G41860.1 59.259 162 66 0 25 186 50 211 1.12e-61 201
Msa1384900 AT2G41860.2 58.642 162 67 0 25 186 50 211 3.23e-61 199
Msa1384900 AT4G23650.1 58.537 164 68 0 17 180 66 229 4.17e-61 199
Msa1384900 AT1G76040.3 56.250 160 70 0 24 183 107 266 1.96e-60 197
Msa1384900 AT5G19450.2 59.477 153 62 0 28 180 56 208 4.74e-60 196
Msa1384900 AT5G19450.1 59.477 153 62 0 28 180 56 208 4.74e-60 196
Msa1384900 AT1G74740.1 57.471 174 71 2 14 184 43 216 5.13e-60 197
Msa1384900 AT1G76040.2 56.250 160 70 0 24 183 107 266 5.33e-60 197
Msa1384900 AT1G18890.1 57.471 174 69 1 12 180 41 214 6.01e-58 191
Msa1384900 AT4G04710.2 53.143 175 78 2 13 183 20 194 6.23e-58 190
Msa1384900 AT4G04710.4 53.143 175 78 2 13 183 20 194 7.85e-58 190
Msa1384900 AT4G04710.1 53.143 175 78 2 13 183 20 194 8.56e-58 190
Msa1384900 AT3G51850.3 53.448 174 80 1 14 186 38 211 1.79e-55 182
Msa1384900 AT4G04740.4 55.135 185 79 1 3 183 39 223 2.29e-55 184
Msa1384900 AT4G04740.6 55.135 185 79 1 3 183 39 223 2.29e-55 184
Msa1384900 AT4G04740.5 55.135 185 79 1 3 183 39 223 2.29e-55 184
Msa1384900 AT4G04740.3 55.135 185 79 1 3 183 39 223 2.29e-55 184
Msa1384900 AT4G04740.1 55.135 185 79 1 3 183 39 223 2.29e-55 184
Msa1384900 AT4G04740.7 55.135 185 79 1 3 183 39 223 2.29e-55 184
Msa1384900 AT4G04740.2 55.135 185 79 1 3 183 39 223 2.37e-55 184
Msa1384900 AT3G51850.2 53.448 174 80 1 14 186 38 211 9.03e-55 182
Msa1384900 AT3G51850.1 53.448 174 80 1 14 186 38 211 1.60e-54 182
Msa1384900 AT2G31500.1 51.149 174 84 1 14 186 50 223 4.86e-54 182
Msa1384900 AT4G04695.1 52.632 171 75 3 19 185 20 188 6.08e-53 177
Msa1384900 AT4G04700.1 51.829 164 75 1 24 183 23 186 3.43e-52 175
Msa1384900 AT4G04710.3 48.000 175 73 3 13 183 20 180 6.30e-47 161
Msa1384900 AT2G17890.1 48.701 154 77 1 29 180 108 261 7.50e-43 152
Msa1384900 AT1G12580.1 43.452 168 95 0 19 186 34 201 2.26e-42 149
Msa1384900 AT5G66210.6 44.311 167 91 1 22 186 55 221 5.48e-41 144
Msa1384900 AT5G66210.4 44.311 167 91 1 22 186 55 221 5.48e-41 144
Msa1384900 AT5G66210.5 44.311 167 91 1 22 186 55 221 1.56e-40 144
Msa1384900 AT5G66210.3 44.311 167 91 1 22 186 55 221 2.29e-40 144
Msa1384900 AT4G36070.1 45.455 154 82 1 29 180 71 224 2.43e-40 144
Msa1384900 AT5G66210.1 44.311 167 91 1 22 186 55 221 2.93e-40 144
Msa1384900 AT5G66210.2 44.311 167 91 1 22 186 55 221 2.93e-40 144
Msa1384900 AT4G36070.2 45.455 154 82 1 29 180 71 224 5.05e-40 144
Msa1384900 AT1G49580.1 43.750 160 86 2 31 186 152 311 1.64e-34 129
Msa1384900 AT1G12680.1 42.647 136 71 1 29 164 107 235 1.83e-34 127
Msa1384900 AT5G24430.1 42.262 168 93 2 23 186 137 304 9.58e-34 127
Msa1384900 AT3G56760.1 42.073 164 87 3 29 186 124 285 2.63e-33 125
Msa1384900 AT3G19100.1 40.828 169 96 2 22 186 137 305 2.84e-33 125
Msa1384900 AT2G41140.1 41.463 164 88 3 29 186 123 284 3.70e-33 125
Msa1384900 AT3G50530.1 40.936 171 93 3 22 186 141 309 5.25e-33 125
Msa1384900 AT3G49370.1 42.767 159 87 2 22 176 135 293 8.00e-33 124
Msa1384900 AT3G50530.2 42.236 161 85 3 22 176 141 299 1.30e-32 124
Msa1384900 AT2G46700.1 41.379 174 86 3 23 186 137 304 3.15e-32 122
Msa1384900 AT1G01140.2 35.429 175 104 4 29 200 19 187 9.67e-29 112
Msa1384900 AT1G01140.1 35.429 175 104 4 29 200 19 187 1.04e-28 112
Msa1384900 AT2G30360.1 37.500 176 100 5 29 200 21 190 1.10e-28 111
Msa1384900 AT1G01140.3 35.429 175 104 4 29 200 19 187 1.28e-28 111
Msa1384900 AT5G35410.2 37.975 158 92 3 21 176 1 154 1.79e-28 110
Msa1384900 AT5G45820.1 38.286 175 98 5 29 200 12 179 2.84e-28 110
Msa1384900 AT5G35410.1 37.975 158 92 3 21 176 1 154 4.03e-28 110
Msa1384900 AT2G26980.2 36.571 175 102 5 29 200 14 182 6.47e-28 106
Msa1384900 AT5G01810.3 38.286 175 98 5 29 200 12 179 2.19e-27 107
Msa1384900 AT4G24400.2 38.514 148 87 2 29 176 9 152 3.15e-27 107
Msa1384900 AT1G30270.2 36.000 175 103 4 29 200 31 199 3.63e-27 107
Msa1384900 AT1G30270.1 36.000 175 103 4 29 200 31 199 3.72e-27 108
Msa1384900 AT2G26980.1 36.571 175 102 5 29 200 14 182 4.11e-27 106
Msa1384900 AT4G24400.1 37.419 155 93 2 29 183 9 159 4.68e-27 107
Msa1384900 AT5G01810.1 38.286 175 98 5 29 200 12 179 5.39e-27 107
Msa1384900 AT5G01810.2 38.286 175 98 5 29 200 12 179 5.39e-27 107
Msa1384900 AT2G26980.4 36.571 175 102 5 29 200 24 192 6.58e-27 107
Msa1384900 AT2G26980.3 36.571 175 102 5 29 200 14 182 7.63e-27 106
Msa1384900 AT2G26980.5 36.571 175 102 5 29 200 14 182 8.07e-27 106
Msa1384900 AT5G21326.1 36.571 175 102 4 29 200 13 181 1.64e-26 105
Msa1384900 AT5G25110.1 37.714 175 99 5 29 200 43 210 1.80e-26 106
Msa1384900 AT2G45490.2 33.140 172 107 3 29 200 22 185 1.92e-26 102
Msa1384900 AT2G46700.2 47.414 116 60 1 72 186 8 123 2.96e-26 104
Msa1384900 AT2G46700.3 47.414 116 60 1 72 186 8 123 2.96e-26 104
Msa1384900 AT2G45490.1 33.140 172 107 3 29 200 22 185 4.71e-26 102
Msa1384900 AT3G01090.2 40.845 142 83 1 22 163 35 175 6.21e-26 104
Msa1384900 AT4G30960.1 37.714 175 99 5 29 200 24 191 6.48e-26 104
Msa1384900 AT3G01090.3 40.845 142 83 1 22 163 12 152 6.89e-26 104
Msa1384900 AT3G01090.1 40.845 142 83 1 22 163 12 152 6.89e-26 104
Msa1384900 AT3G17510.1 36.000 175 103 5 29 200 20 188 1.31e-25 103
Msa1384900 AT5G04510.3 34.667 150 94 2 29 178 44 189 3.63e-25 100
Msa1384900 AT5G21222.1 33.526 173 110 3 29 200 13 181 5.79e-25 102
Msa1384900 AT5G21222.2 33.526 173 110 3 29 200 13 181 5.79e-25 102
Msa1384900 AT5G21222.4 33.526 173 110 3 29 200 13 181 5.79e-25 102
Msa1384900 AT5G21222.3 33.526 173 110 3 29 200 13 181 5.79e-25 102
Msa1384900 AT3G29160.3 39.437 142 85 1 22 163 13 153 6.86e-25 100
Msa1384900 AT5G04510.2 34.667 150 94 2 29 178 44 189 1.27e-24 100
Msa1384900 AT5G04510.1 34.667 150 94 2 29 178 44 189 1.34e-24 100
Msa1384900 AT3G29160.1 39.437 142 85 1 22 163 13 153 2.50e-24 100
Msa1384900 AT3G29160.2 39.437 142 85 1 22 163 13 153 2.50e-24 100
Msa1384900 AT4G14580.1 33.529 170 107 2 8 177 3 166 3.10e-24 99.4
Msa1384900 AT5G45810.1 36.478 159 96 3 29 187 28 181 5.06e-24 99.4
Msa1384900 AT2G25090.1 38.562 153 89 3 25 176 11 159 6.60e-24 99.0
Msa1384900 AT3G23000.1 34.899 149 94 1 29 177 25 170 9.52e-24 98.2
Msa1384900 AT1G48260.1 36.000 175 103 5 29 200 11 179 1.12e-23 97.8
Msa1384900 AT5G58380.1 34.078 179 108 5 25 200 8 179 3.95e-23 96.7
Msa1384900 AT4G32830.1 30.994 171 110 3 29 199 31 193 4.09e-23 94.7
Msa1384900 AT2G25880.1 30.994 171 110 3 29 199 25 187 7.36e-23 94.0
Msa1384900 AT4G18700.1 35.849 159 97 3 29 187 26 179 7.55e-23 95.9
Msa1384900 AT2G25880.4 30.994 171 110 3 29 199 38 200 1.24e-22 93.6
Msa1384900 AT5G39440.1 37.162 148 89 2 29 176 19 162 1.28e-22 95.5
Msa1384900 AT3G10540.1 34.000 150 95 2 29 178 45 190 1.91e-22 94.7
Msa1384900 AT2G25880.3 32.317 164 107 2 29 192 86 245 2.54e-22 93.2
Msa1384900 AT5G01820.1 37.692 130 79 2 29 158 22 149 2.71e-22 94.0
Msa1384900 AT3G04530.1 35.915 142 89 2 25 164 7 148 2.75e-22 92.0
Msa1384900 AT5G07070.1 39.098 133 79 2 25 157 8 138 8.75e-22 92.8
Msa1384900 AT1G08650.2 34.815 135 87 1 29 162 15 149 1.49e-21 90.1
Msa1384900 AT5G10930.1 35.227 176 103 6 29 200 12 180 1.53e-21 92.0
Msa1384900 AT1G08650.1 34.815 135 87 1 29 162 15 149 2.57e-21 89.7
Msa1384900 AT2G38490.1 36.158 177 99 8 29 200 28 195 3.80e-21 90.9
Msa1384900 AT3G61960.2 33.784 148 96 2 29 176 10 155 5.84e-21 90.9
Msa1384900 AT3G61960.1 33.784 148 96 2 29 176 10 155 6.81e-21 90.5
Msa1384900 AT5G57630.2 36.486 148 89 3 29 176 12 154 4.70e-20 87.4
Msa1384900 AT5G57630.1 36.486 148 89 3 29 176 12 154 5.20e-20 87.4
Msa1384900 AT1G29230.1 33.962 159 100 3 29 187 74 227 1.95e-19 86.3
Msa1384900 AT5G08590.1 36.486 148 88 3 29 176 4 145 2.52e-19 85.1
Msa1384900 AT2G37840.1 29.651 172 117 3 29 200 12 179 3.08e-19 85.9
Msa1384900 AT5G63650.1 35.811 148 89 3 29 176 4 145 9.55e-19 83.6
Msa1384900 AT3G53930.2 30.233 172 116 3 29 200 20 187 1.12e-18 84.3
Msa1384900 AT3G53930.1 30.233 172 116 3 29 200 20 187 1.16e-18 84.3
Msa1384900 AT3G08720.1 29.310 174 117 3 27 200 138 305 1.63e-18 83.6
Msa1384900 AT3G08720.3 29.310 174 117 3 27 200 138 305 1.63e-18 83.6
Msa1384900 AT3G08720.4 29.310 174 117 3 27 200 138 305 1.63e-18 83.6
Msa1384900 AT3G08720.2 29.310 174 117 3 27 200 138 305 1.63e-18 83.6
Msa1384900 AT4G40010.1 35.333 150 91 4 27 176 2 145 1.88e-18 82.8
Msa1384900 AT5G12480.2 59.677 62 25 0 119 180 55 116 1.12e-17 80.9
Msa1384900 AT2G34180.1 29.348 184 125 3 4 187 32 210 4.89e-17 79.3
Msa1384900 AT1G78290.3 36.424 151 88 5 27 176 2 145 6.87e-17 78.2
Msa1384900 AT1G78290.2 36.424 151 88 5 27 176 2 145 6.87e-17 78.2
Msa1384900 AT3G08730.1 27.326 172 119 3 29 200 134 299 8.88e-17 78.6
Msa1384900 AT3G08730.2 27.326 172 119 3 29 200 134 299 8.88e-17 78.6
Msa1384900 AT1G18350.1 34.028 144 84 5 35 176 51 185 1.32e-16 77.0
Msa1384900 AT4G33950.2 33.784 148 92 3 29 176 21 162 1.97e-16 77.0
Msa1384900 AT4G33950.1 33.784 148 92 3 29 176 21 162 2.56e-16 76.6
Msa1384900 AT3G50500.1 33.108 148 93 3 29 176 23 164 3.21e-16 76.6
Msa1384900 AT3G50500.2 34.459 148 91 4 29 176 23 164 3.39e-16 76.6
Msa1384900 AT1G30270.3 38.614 101 54 3 103 200 7 102 1.70e-15 74.7
Msa1384900 AT5G62310.1 30.000 150 101 2 27 176 752 897 3.30e-15 74.3
Msa1384900 AT1G60940.1 31.757 148 95 3 29 176 4 145 3.39e-15 73.6
Msa1384900 AT1G60940.2 31.757 148 95 3 29 176 4 145 3.39e-15 73.6
Msa1384900 AT1G10940.1 31.757 148 95 3 29 176 4 145 4.20e-15 73.2
Msa1384900 AT4G14350.3 28.873 142 97 2 35 176 125 262 4.40e-15 73.6
Msa1384900 AT5G66880.1 32.432 148 94 3 29 176 22 163 4.41e-15 73.2
Msa1384900 AT5G66880.2 32.432 148 94 3 29 176 22 163 4.41e-15 73.2
Msa1384900 AT4G14350.2 28.873 142 97 2 35 176 125 262 4.41e-15 73.6
Msa1384900 AT4G14350.1 28.873 142 97 2 35 176 125 262 4.41e-15 73.6
Msa1384900 AT4G14350.4 28.873 142 97 2 35 176 125 262 4.41e-15 73.6
Msa1384900 AT3G27580.2 33.113 151 93 5 29 175 182 328 5.42e-15 73.6
Msa1384900 AT3G27580.1 33.113 151 93 5 29 175 182 328 5.42e-15 73.6
Msa1384900 AT2G20470.2 28.906 128 90 1 35 162 130 256 6.40e-15 73.2
Msa1384900 AT2G20470.1 28.906 128 90 1 35 162 130 256 6.40e-15 73.2
Msa1384900 AT2G20470.3 28.906 128 90 1 35 162 130 256 6.93e-15 73.2
Msa1384900 AT1G48490.4 30.405 148 99 2 29 176 829 972 1.05e-14 72.8
Msa1384900 AT2G23030.1 34.000 150 93 3 27 176 2 145 1.06e-14 72.0
Msa1384900 AT1G48490.3 30.405 148 99 2 29 176 828 971 1.08e-14 72.8
Msa1384900 AT1G48490.2 30.405 148 99 2 29 176 828 971 1.08e-14 72.8
Msa1384900 AT1G48490.1 30.405 148 99 2 29 176 828 971 1.08e-14 72.8
Msa1384900 AT3G23310.1 28.125 128 91 1 35 162 126 252 3.77e-14 70.9
Msa1384900 AT5G18700.1 30.405 148 93 3 29 176 4 141 3.93e-14 71.2
Msa1384900 AT3G17510.2 40.594 101 52 4 103 200 13 108 7.49e-14 69.7
Msa1384900 AT3G17850.1 29.730 148 100 2 29 176 882 1025 2.05e-13 68.9
Msa1384900 AT4G33080.2 26.761 142 100 2 35 176 100 237 3.23e-13 68.2
Msa1384900 AT4G33080.1 26.761 142 100 2 35 176 100 237 3.29e-13 68.2
Msa1384900 AT1G30640.3 26.056 142 101 2 35 176 33 170 3.74e-13 68.2
Msa1384900 AT1G30640.2 26.056 142 101 2 35 176 126 263 5.09e-13 67.8
Msa1384900 AT1G30640.1 26.056 142 101 2 35 176 126 263 5.09e-13 67.8
Msa1384900 AT1G03920.2 28.125 128 91 1 35 162 30 156 5.35e-13 67.4
Msa1384900 AT1G48260.2 41.414 99 50 4 105 200 1 94 5.36e-13 67.4
Msa1384900 AT1G48260.4 41.414 99 50 4 105 200 1 94 5.36e-13 67.4
Msa1384900 AT1G48260.3 41.414 99 50 4 105 200 1 94 5.36e-13 67.4
Msa1384900 AT1G48260.5 41.414 99 50 4 105 200 1 94 5.36e-13 67.4
Msa1384900 AT2G19400.1 27.344 128 92 1 35 162 111 237 7.20e-13 67.4
Msa1384900 AT1G03920.1 28.125 128 91 1 35 162 143 269 7.53e-13 67.4
Msa1384900 AT1G03920.3 28.125 128 91 1 35 162 143 269 7.53e-13 67.4
Msa1384900 AT2G25880.2 28.662 157 101 4 29 178 25 177 1.33e-12 65.5
Msa1384900 AT1G49180.2 30.201 149 100 4 29 176 7 152 2.32e-12 65.5
Msa1384900 AT3G06030.1 26.901 171 116 3 12 177 51 217 2.68e-12 65.5
Msa1384900 AT1G49180.1 30.201 149 100 4 29 176 7 152 2.76e-12 65.5
Msa1384900 AT1G45160.1 28.378 148 102 2 29 176 670 813 4.02e-12 65.1
Msa1384900 AT1G45160.2 28.378 148 102 2 29 176 670 813 5.26e-12 65.1
Msa1384900 AT5G50860.2 26.374 182 120 5 14 186 92 268 6.13e-12 64.3
Msa1384900 AT5G57565.7 33.613 119 68 3 77 195 9 116 8.10e-12 60.5
Msa1384900 AT5G50860.1 26.374 182 120 5 14 186 92 268 8.20e-12 64.3
Msa1384900 AT5G08590.2 47.143 70 36 1 107 176 1 69 1.97e-11 62.4
Msa1384900 AT1G54610.1 30.286 175 102 8 14 176 96 262 2.35e-11 62.8
Msa1384900 AT1G54610.3 30.286 175 102 8 14 176 96 262 2.35e-11 62.8
Msa1384900 AT1G54610.2 30.286 175 102 8 14 176 96 262 2.35e-11 62.8
Msa1384900 AT5G09890.2 26.056 142 101 2 35 176 108 245 2.90e-11 62.4
Msa1384900 AT5G09890.1 26.056 142 101 2 35 176 108 245 2.98e-11 62.4
Msa1384900 AT1G33770.1 32.000 150 93 6 34 180 146 289 3.15e-11 62.4
Msa1384900 AT1G09000.2 25.843 178 112 6 8 177 53 218 3.54e-11 62.4
Msa1384900 AT5G60550.1 31.884 138 85 3 34 163 112 248 3.76e-11 62.0
Msa1384900 AT1G09000.1 25.843 178 112 6 8 177 53 218 3.89e-11 62.4
Msa1384900 AT1G03740.2 29.545 176 110 6 14 180 191 361 4.89e-11 62.0
Msa1384900 AT1G03740.1 29.545 176 110 6 14 180 191 361 5.34e-11 62.0
Msa1384900 AT5G57565.3 34.286 105 65 2 77 181 9 109 6.89e-11 58.5
Msa1384900 AT5G57565.2 36.782 87 51 2 77 163 9 91 8.37e-11 58.2
Msa1384900 AT5G57565.6 36.782 87 51 2 77 163 9 91 8.37e-11 58.2

Find 47 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGTTATTGCAGGTTAA+TGG 0.242789 tig0020683:+98224 Msa1384900:intron
TTCCGTGATTTACTATTTAC+TGG 0.251599 tig0020683:-96963 None:intergenic
TCTTCTCAAAACTATTGATT+TGG 0.255492 tig0020683:+97730 Msa1384900:CDS
GGGAGAACCCATGTGGGTTT+TGG 0.310343 tig0020683:-97260 None:intergenic
TGGTGTTGGGTTGGTGGTGT+TGG 0.318686 tig0020683:-97237 None:intergenic
AAACCTCTCCAAGTACTAAA+TGG 0.324559 tig0020683:-98055 None:intergenic
CTTCTCAAAACTATTGATTT+GGG 0.330503 tig0020683:+97731 Msa1384900:CDS
CCATGGATCCTCACAACATT+TGG 0.342089 tig0020683:-97488 None:intergenic
TTACACCTTAGGTAGAAAAC+TGG 0.346520 tig0020683:+97310 Msa1384900:CDS
TTTAGAGAGAAAGGGATAAG+AGG 0.352761 tig0020683:+97994 Msa1384900:intron
GCCATTTGCCATTTAGTACT+TGG 0.364398 tig0020683:+98047 Msa1384900:CDS
TTAGAGAGAAAGGGATAAGA+GGG 0.367728 tig0020683:+97995 Msa1384900:intron
AACTGGGTCAAGGTCAATTC+GGG 0.383351 tig0020683:+97327 Msa1384900:CDS
AAGAGGATTATGATGATGTT+TGG 0.389948 tig0020683:+97429 Msa1384900:CDS
GTTGAAGCTTGTCATTCTCT+TGG 0.391789 tig0020683:+97647 Msa1384900:CDS
GTTGTACTGTGTTTGGTGTT+TGG 0.400472 tig0020683:-97196 None:intergenic
GTTATGGAGCTTTGTGAAGG+TGG 0.405017 tig0020683:+97542 Msa1384900:CDS
CTTCGTGAAGTTTACACCTT+AGG 0.414566 tig0020683:+97299 Msa1384900:CDS
CTTCAACGTTGTACTGTGTT+TGG 0.422838 tig0020683:-97203 None:intergenic
AAACTGGGTCAAGGTCAATT+CGG 0.427354 tig0020683:+97326 Msa1384900:CDS
GACAAGCTGCTAAGTTGATT+AGG 0.434391 tig0020683:+97609 Msa1384900:CDS
CACTGCACACACAACTCAAC+GGG 0.462058 tig0020683:+97359 Msa1384900:CDS
TTATGGAGCTTTGTGAAGGT+GGG 0.464620 tig0020683:+97543 Msa1384900:CDS
CCAAATGTTGTGAGGATCCA+TGG 0.478228 tig0020683:+97488 Msa1384900:CDS
AAGGTGGGGAATTGTTTGAT+AGG 0.482447 tig0020683:+97558 Msa1384900:CDS
TCCAAGTACTAAATGGCAAA+TGG 0.491821 tig0020683:-98048 None:intergenic
GTTTGATAGGATTGTGCAGA+AGG 0.496393 tig0020683:+97571 Msa1384900:CDS
TAGAGAGAAAGGGATAAGAG+GGG 0.497006 tig0020683:+97996 Msa1384900:intron
AGAGAGAAAGGGATAAGAGG+GGG 0.516640 tig0020683:+97997 Msa1384900:intron
GTTATTGCAGGTTAATGGCA+TGG 0.540418 tig0020683:+98229 Msa1384900:intron
TATGGAGCTTTGTGAAGGTG+GGG 0.547038 tig0020683:+97544 Msa1384900:CDS
GTTGATTAGGACTATTGTTG+AGG 0.549588 tig0020683:+97622 Msa1384900:CDS
TGAGATTGATTTGCAAGCAT+AGG 0.556969 tig0020683:-97387 None:intergenic
CAACACCACCAAAACCCACA+TGG 0.558857 tig0020683:+97252 Msa1384900:CDS
TACCAGTAAATAGTAAATCA+CGG 0.588140 tig0020683:+96961 Msa1384900:five_prime_UTR
TTGGTTATGGAGCTTTGTGA+AGG 0.589557 tig0020683:+97539 Msa1384900:CDS
TTGCCATTTAGTACTTGGAG+AGG 0.593796 tig0020683:+98052 Msa1384900:CDS
GAGGATCCATGGTACTTATG+AGG 0.601907 tig0020683:+97499 Msa1384900:CDS
TCACTGCACACACAACTCAA+CGG 0.605786 tig0020683:+97358 Msa1384900:CDS
AACACCACCAAAACCCACAT+GGG 0.617156 tig0020683:+97253 Msa1384900:CDS
TACACCTTAGGTAGAAAACT+GGG 0.621673 tig0020683:+97311 Msa1384900:CDS
TTTGATAGGATTGTGCAGAA+GGG 0.625435 tig0020683:+97572 Msa1384900:CDS
TTAGGTAGAAAACTGGGTCA+AGG 0.630631 tig0020683:+97317 Msa1384900:CDS
ACGCATCCTCATAAGTACCA+TGG 0.633611 tig0020683:-97505 None:intergenic
TACATAAGGGAGAACCCATG+TGG 0.649949 tig0020683:-97267 None:intergenic
CTGAAAATCCAAATGTTGTG+AGG 0.655889 tig0020683:+97480 Msa1384900:CDS
ACATAAGGGAGAACCCATGT+GGG 0.697832 tig0020683:-97266 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCCAATTGATTATAAAT+CGG + tig0020683:98090-98109 Msa1384900:intron 15.0%
!!! TTAAAATCAAACTTTGTTTT+TGG + tig0020683:98160-98179 Msa1384900:intron 15.0%
!!! TTTTCCAATTGATTATAAAT+CGG + tig0020683:98090-98109 Msa1384900:intron 15.0%
!!! TTAAAATCAAACTTTGTTTT+TGG + tig0020683:98160-98179 Msa1384900:intron 15.0%
!! CAAAAAATAAAATACAAACC+TGG - tig0020683:97775-97794 None:intergenic 20.0%
!!! TTTGATAATTTATTGCATCT+GGG + tig0020683:97842-97861 Msa1384900:intron 20.0%
!! ATTTATTGTTCAGAATGAAA+TGG + tig0020683:97902-97921 Msa1384900:intron 20.0%
!!! TTTTTGTTTTTAGAGAGAAA+GGG + tig0020683:97986-98005 Msa1384900:intron 20.0%
!!! TATATACTAATTGTTATTGC+AGG + tig0020683:98217-98236 Msa1384900:intron 20.0%
!! CAAAAAATAAAATACAAACC+TGG - tig0020683:97775-97794 None:intergenic 20.0%
!!! TTTGATAATTTATTGCATCT+GGG + tig0020683:97842-97861 Msa1384900:intron 20.0%
!! ATTTATTGTTCAGAATGAAA+TGG + tig0020683:97902-97921 Msa1384900:intron 20.0%
!!! TTTTTGTTTTTAGAGAGAAA+GGG + tig0020683:97986-98005 Msa1384900:intron 20.0%
!!! TATATACTAATTGTTATTGC+AGG + tig0020683:98217-98236 Msa1384900:intron 20.0%
! TACCAGTAAATAGTAAATCA+CGG + tig0020683:96961-96980 Msa1384900:five_prime_UTR 25.0%
!! GAAGATTTTCAGTTACATAA+GGG - tig0020683:97283-97302 None:intergenic 25.0%
! ACAAAAAATTCTCAGGTTTA+AGG - tig0020683:97688-97707 None:intergenic 25.0%
! GAATCAAACAAAAAATTCTC+AGG - tig0020683:97695-97714 None:intergenic 25.0%
!! TCTTCTCAAAACTATTGATT+TGG + tig0020683:97730-97749 Msa1384900:CDS 25.0%
!!! CTTCTCAAAACTATTGATTT+GGG + tig0020683:97731-97750 Msa1384900:CDS 25.0%
!! GTTTGATAATTTATTGCATC+TGG + tig0020683:97841-97860 Msa1384900:intron 25.0%
!!! GATTTCAATCTTGTTGATTT+TGG + tig0020683:97950-97969 Msa1384900:intron 25.0%
!!! GTTTTTGTTTTTAGAGAGAA+AGG + tig0020683:97985-98004 Msa1384900:intron 25.0%
!!! CAGGAAATAGATTGATTTTA+GGG + tig0020683:98115-98134 Msa1384900:intron 25.0%
!! TAATTGTTATTGCAGGTTAA+TGG + tig0020683:98224-98243 Msa1384900:intron 25.0%
! TACCAGTAAATAGTAAATCA+CGG + tig0020683:96961-96980 Msa1384900:five_prime_UTR 25.0%
!! GAAGATTTTCAGTTACATAA+GGG - tig0020683:97283-97302 None:intergenic 25.0%
! ACAAAAAATTCTCAGGTTTA+AGG - tig0020683:97688-97707 None:intergenic 25.0%
! GAATCAAACAAAAAATTCTC+AGG - tig0020683:97695-97714 None:intergenic 25.0%
!! TCTTCTCAAAACTATTGATT+TGG + tig0020683:97730-97749 Msa1384900:CDS 25.0%
!!! CTTCTCAAAACTATTGATTT+GGG + tig0020683:97731-97750 Msa1384900:CDS 25.0%
!! GTTTGATAATTTATTGCATC+TGG + tig0020683:97841-97860 Msa1384900:intron 25.0%
!!! GATTTCAATCTTGTTGATTT+TGG + tig0020683:97950-97969 Msa1384900:intron 25.0%
!!! GTTTTTGTTTTTAGAGAGAA+AGG + tig0020683:97985-98004 Msa1384900:intron 25.0%
!!! CAGGAAATAGATTGATTTTA+GGG + tig0020683:98115-98134 Msa1384900:intron 25.0%
!! TAATTGTTATTGCAGGTTAA+TGG + tig0020683:98224-98243 Msa1384900:intron 25.0%
TTCCGTGATTTACTATTTAC+TGG - tig0020683:96966-96985 None:intergenic 30.0%
! CGAAGATTTTCAGTTACATA+AGG - tig0020683:97284-97303 None:intergenic 30.0%
! AAGAGGATTATGATGATGTT+TGG + tig0020683:97429-97448 Msa1384900:CDS 30.0%
! CATTTGGATTTTCAGACAAA+TGG - tig0020683:97475-97494 None:intergenic 30.0%
! GTTTTCTGTTCATTTGGTTA+TGG + tig0020683:97526-97545 Msa1384900:CDS 30.0%
! GTGATTTGTGAAATGATGAA+TGG + tig0020683:97819-97838 Msa1384900:intron 30.0%
! TGGCTTAGTTGATTTATTTG+TGG + tig0020683:97922-97941 Msa1384900:intron 30.0%
! TGGACCGATTTATAATCAAT+TGG - tig0020683:98097-98116 None:intergenic 30.0%
AATTGATTATAAATCGGTCC+AGG + tig0020683:98096-98115 Msa1384900:intron 30.0%
CCTAAAATCAATCTATTTCC+TGG - tig0020683:98117-98136 None:intergenic 30.0%
!! CCAGGAAATAGATTGATTTT+AGG + tig0020683:98114-98133 Msa1384900:intron 30.0%
!!! CTTTGTTTTTGGTTGTGTAT+TGG + tig0020683:98171-98190 Msa1384900:intron 30.0%
TTCCGTGATTTACTATTTAC+TGG - tig0020683:96966-96985 None:intergenic 30.0%
! CGAAGATTTTCAGTTACATA+AGG - tig0020683:97284-97303 None:intergenic 30.0%
! AAGAGGATTATGATGATGTT+TGG + tig0020683:97429-97448 Msa1384900:CDS 30.0%
! CATTTGGATTTTCAGACAAA+TGG - tig0020683:97475-97494 None:intergenic 30.0%
! GTTTTCTGTTCATTTGGTTA+TGG + tig0020683:97526-97545 Msa1384900:CDS 30.0%
! GTGATTTGTGAAATGATGAA+TGG + tig0020683:97819-97838 Msa1384900:intron 30.0%
! TGGCTTAGTTGATTTATTTG+TGG + tig0020683:97922-97941 Msa1384900:intron 30.0%
! TGGACCGATTTATAATCAAT+TGG - tig0020683:98097-98116 None:intergenic 30.0%
AATTGATTATAAATCGGTCC+AGG + tig0020683:98096-98115 Msa1384900:intron 30.0%
CCTAAAATCAATCTATTTCC+TGG - tig0020683:98117-98136 None:intergenic 30.0%
!! CCAGGAAATAGATTGATTTT+AGG + tig0020683:98114-98133 Msa1384900:intron 30.0%
!!! CTTTGTTTTTGGTTGTGTAT+TGG + tig0020683:98171-98190 Msa1384900:intron 30.0%
TTACACCTTAGGTAGAAAAC+TGG + tig0020683:97310-97329 Msa1384900:CDS 35.0%
TACACCTTAGGTAGAAAACT+GGG + tig0020683:97311-97330 Msa1384900:CDS 35.0%
!! TGAGATTGATTTGCAAGCAT+AGG - tig0020683:97390-97409 None:intergenic 35.0%
! GAAGAAGCTTTTATGCAAAG+AGG + tig0020683:97412-97431 Msa1384900:CDS 35.0%
CTGAAAATCCAAATGTTGTG+AGG + tig0020683:97480-97499 Msa1384900:CDS 35.0%
TTTGATAGGATTGTGCAGAA+GGG + tig0020683:97572-97591 Msa1384900:CDS 35.0%
GTTGATTAGGACTATTGTTG+AGG + tig0020683:97622-97641 Msa1384900:CDS 35.0%
!!! TTGTCTGTTTTTTACAAGCC+AGG + tig0020683:97754-97773 Msa1384900:CDS 35.0%
!!! TCTTGTTGATTTTGGCTGTA+TGG + tig0020683:97958-97977 Msa1384900:intron 35.0%
TTTAGAGAGAAAGGGATAAG+AGG + tig0020683:97994-98013 Msa1384900:intron 35.0%
TTAGAGAGAAAGGGATAAGA+GGG + tig0020683:97995-98014 Msa1384900:intron 35.0%
TCCAAGTACTAAATGGCAAA+TGG - tig0020683:98051-98070 None:intergenic 35.0%
AAACCTCTCCAAGTACTAAA+TGG - tig0020683:98058-98077 None:intergenic 35.0%
TTACACCTTAGGTAGAAAAC+TGG + tig0020683:97310-97329 Msa1384900:CDS 35.0%
TACACCTTAGGTAGAAAACT+GGG + tig0020683:97311-97330 Msa1384900:CDS 35.0%
!! TGAGATTGATTTGCAAGCAT+AGG - tig0020683:97390-97409 None:intergenic 35.0%
! GAAGAAGCTTTTATGCAAAG+AGG + tig0020683:97412-97431 Msa1384900:CDS 35.0%
CTGAAAATCCAAATGTTGTG+AGG + tig0020683:97480-97499 Msa1384900:CDS 35.0%
TTTGATAGGATTGTGCAGAA+GGG + tig0020683:97572-97591 Msa1384900:CDS 35.0%
GTTGATTAGGACTATTGTTG+AGG + tig0020683:97622-97641 Msa1384900:CDS 35.0%
!!! TTGTCTGTTTTTTACAAGCC+AGG + tig0020683:97754-97773 Msa1384900:CDS 35.0%
!!! TCTTGTTGATTTTGGCTGTA+TGG + tig0020683:97958-97977 Msa1384900:intron 35.0%
TTTAGAGAGAAAGGGATAAG+AGG + tig0020683:97994-98013 Msa1384900:intron 35.0%
TTAGAGAGAAAGGGATAAGA+GGG + tig0020683:97995-98014 Msa1384900:intron 35.0%
TCCAAGTACTAAATGGCAAA+TGG - tig0020683:98051-98070 None:intergenic 35.0%
AAACCTCTCCAAGTACTAAA+TGG - tig0020683:98058-98077 None:intergenic 35.0%
!! GTTGTACTGTGTTTGGTGTT+TGG - tig0020683:97199-97218 None:intergenic 40.0%
CTTCAACGTTGTACTGTGTT+TGG - tig0020683:97206-97225 None:intergenic 40.0%
CTTCGTGAAGTTTACACCTT+AGG + tig0020683:97299-97318 Msa1384900:CDS 40.0%
! TTGACCCAGTTTTCTACCTA+AGG - tig0020683:97318-97337 None:intergenic 40.0%
TTAGGTAGAAAACTGGGTCA+AGG + tig0020683:97317-97336 Msa1384900:CDS 40.0%
AAACTGGGTCAAGGTCAATT+CGG + tig0020683:97326-97345 Msa1384900:CDS 40.0%
! GGATGCGTTTTCTGTTCATT+TGG + tig0020683:97520-97539 Msa1384900:CDS 40.0%
! TTGGTTATGGAGCTTTGTGA+AGG + tig0020683:97539-97558 Msa1384900:CDS 40.0%
! TTATGGAGCTTTGTGAAGGT+GGG + tig0020683:97543-97562 Msa1384900:CDS 40.0%
AAGGTGGGGAATTGTTTGAT+AGG + tig0020683:97558-97577 Msa1384900:CDS 40.0%
GTTTGATAGGATTGTGCAGA+AGG + tig0020683:97571-97590 Msa1384900:CDS 40.0%
!! GACAAGCTGCTAAGTTGATT+AGG + tig0020683:97609-97628 Msa1384900:CDS 40.0%
GTTGAAGCTTGTCATTCTCT+TGG + tig0020683:97647-97666 Msa1384900:CDS 40.0%
!! TGCGGTGGATTCTTTTATGA+CGG + tig0020683:97877-97896 Msa1384900:intron 40.0%
TAGAGAGAAAGGGATAAGAG+GGG + tig0020683:97996-98015 Msa1384900:intron 40.0%
! GCCATTTGCCATTTAGTACT+TGG + tig0020683:98047-98066 Msa1384900:CDS 40.0%
! TTGCCATTTAGTACTTGGAG+AGG + tig0020683:98052-98071 Msa1384900:CDS 40.0%
TTTAGGGAGCAATGTGATCT+AGG + tig0020683:98131-98150 Msa1384900:intron 40.0%
TTAGGGAGCAATGTGATCTA+GGG + tig0020683:98132-98151 Msa1384900:intron 40.0%
GTTATTGCAGGTTAATGGCA+TGG + tig0020683:98229-98248 Msa1384900:intron 40.0%
!! GTTGTACTGTGTTTGGTGTT+TGG - tig0020683:97199-97218 None:intergenic 40.0%
CTTCAACGTTGTACTGTGTT+TGG - tig0020683:97206-97225 None:intergenic 40.0%
CTTCGTGAAGTTTACACCTT+AGG + tig0020683:97299-97318 Msa1384900:CDS 40.0%
! TTGACCCAGTTTTCTACCTA+AGG - tig0020683:97318-97337 None:intergenic 40.0%
TTAGGTAGAAAACTGGGTCA+AGG + tig0020683:97317-97336 Msa1384900:CDS 40.0%
AAACTGGGTCAAGGTCAATT+CGG + tig0020683:97326-97345 Msa1384900:CDS 40.0%
! GGATGCGTTTTCTGTTCATT+TGG + tig0020683:97520-97539 Msa1384900:CDS 40.0%
! TTGGTTATGGAGCTTTGTGA+AGG + tig0020683:97539-97558 Msa1384900:CDS 40.0%
! TTATGGAGCTTTGTGAAGGT+GGG + tig0020683:97543-97562 Msa1384900:CDS 40.0%
AAGGTGGGGAATTGTTTGAT+AGG + tig0020683:97558-97577 Msa1384900:CDS 40.0%
GTTTGATAGGATTGTGCAGA+AGG + tig0020683:97571-97590 Msa1384900:CDS 40.0%
!! GACAAGCTGCTAAGTTGATT+AGG + tig0020683:97609-97628 Msa1384900:CDS 40.0%
GTTGAAGCTTGTCATTCTCT+TGG + tig0020683:97647-97666 Msa1384900:CDS 40.0%
!! TGCGGTGGATTCTTTTATGA+CGG + tig0020683:97877-97896 Msa1384900:intron 40.0%
TAGAGAGAAAGGGATAAGAG+GGG + tig0020683:97996-98015 Msa1384900:intron 40.0%
! GCCATTTGCCATTTAGTACT+TGG + tig0020683:98047-98066 Msa1384900:CDS 40.0%
! TTGCCATTTAGTACTTGGAG+AGG + tig0020683:98052-98071 Msa1384900:CDS 40.0%
TTTAGGGAGCAATGTGATCT+AGG + tig0020683:98131-98150 Msa1384900:intron 40.0%
TTAGGGAGCAATGTGATCTA+GGG + tig0020683:98132-98151 Msa1384900:intron 40.0%
GTTATTGCAGGTTAATGGCA+TGG + tig0020683:98229-98248 Msa1384900:intron 40.0%
!!! ATGTGGGTTTTGGTGGTGTT+GGG - tig0020683:97253-97272 None:intergenic 45.0%
AACACCACCAAAACCCACAT+GGG + tig0020683:97253-97272 Msa1384900:CDS 45.0%
ACATAAGGGAGAACCCATGT+GGG - tig0020683:97269-97288 None:intergenic 45.0%
TACATAAGGGAGAACCCATG+TGG - tig0020683:97270-97289 None:intergenic 45.0%
AACTGGGTCAAGGTCAATTC+GGG + tig0020683:97327-97346 Msa1384900:CDS 45.0%
TCACTGCACACACAACTCAA+CGG + tig0020683:97358-97377 Msa1384900:CDS 45.0%
CCATGGATCCTCACAACATT+TGG - tig0020683:97491-97510 None:intergenic 45.0%
CCAAATGTTGTGAGGATCCA+TGG + tig0020683:97488-97507 Msa1384900:CDS 45.0%
GAGGATCCATGGTACTTATG+AGG + tig0020683:97499-97518 Msa1384900:CDS 45.0%
ACGCATCCTCATAAGTACCA+TGG - tig0020683:97508-97527 None:intergenic 45.0%
! GTTATGGAGCTTTGTGAAGG+TGG + tig0020683:97542-97561 Msa1384900:CDS 45.0%
! TATGGAGCTTTGTGAAGGTG+GGG + tig0020683:97544-97563 Msa1384900:CDS 45.0%
TCTGGGTCATTGTTCAGATG+CGG + tig0020683:97859-97878 Msa1384900:intron 45.0%
AGAGAGAAAGGGATAAGAGG+GGG + tig0020683:97997-98016 Msa1384900:intron 45.0%
!!! ATGTGGGTTTTGGTGGTGTT+GGG - tig0020683:97253-97272 None:intergenic 45.0%
AACACCACCAAAACCCACAT+GGG + tig0020683:97253-97272 Msa1384900:CDS 45.0%
ACATAAGGGAGAACCCATGT+GGG - tig0020683:97269-97288 None:intergenic 45.0%
TACATAAGGGAGAACCCATG+TGG - tig0020683:97270-97289 None:intergenic 45.0%
AACTGGGTCAAGGTCAATTC+GGG + tig0020683:97327-97346 Msa1384900:CDS 45.0%
TCACTGCACACACAACTCAA+CGG + tig0020683:97358-97377 Msa1384900:CDS 45.0%
CCATGGATCCTCACAACATT+TGG - tig0020683:97491-97510 None:intergenic 45.0%
CCAAATGTTGTGAGGATCCA+TGG + tig0020683:97488-97507 Msa1384900:CDS 45.0%
GAGGATCCATGGTACTTATG+AGG + tig0020683:97499-97518 Msa1384900:CDS 45.0%
ACGCATCCTCATAAGTACCA+TGG - tig0020683:97508-97527 None:intergenic 45.0%
! GTTATGGAGCTTTGTGAAGG+TGG + tig0020683:97542-97561 Msa1384900:CDS 45.0%
! TATGGAGCTTTGTGAAGGTG+GGG + tig0020683:97544-97563 Msa1384900:CDS 45.0%
TCTGGGTCATTGTTCAGATG+CGG + tig0020683:97859-97878 Msa1384900:intron 45.0%
AGAGAGAAAGGGATAAGAGG+GGG + tig0020683:97997-98016 Msa1384900:intron 45.0%
!!! TTTTGGTGGTGTTGGGTTGG+TGG - tig0020683:97246-97265 None:intergenic 50.0%
!!! CATGTGGGTTTTGGTGGTGT+TGG - tig0020683:97254-97273 None:intergenic 50.0%
CAACACCACCAAAACCCACA+TGG + tig0020683:97252-97271 Msa1384900:CDS 50.0%
!! AGAACCCATGTGGGTTTTGG+TGG - tig0020683:97260-97279 None:intergenic 50.0%
CACTGCACACACAACTCAAC+GGG + tig0020683:97359-97378 Msa1384900:CDS 50.0%
!!! TTTTGGTGGTGTTGGGTTGG+TGG - tig0020683:97246-97265 None:intergenic 50.0%
!!! CATGTGGGTTTTGGTGGTGT+TGG - tig0020683:97254-97273 None:intergenic 50.0%
CAACACCACCAAAACCCACA+TGG + tig0020683:97252-97271 Msa1384900:CDS 50.0%
!! AGAACCCATGTGGGTTTTGG+TGG - tig0020683:97260-97279 None:intergenic 50.0%
CACTGCACACACAACTCAAC+GGG + tig0020683:97359-97378 Msa1384900:CDS 50.0%
!! TGGTGTTGGGTTGGTGGTGT+TGG - tig0020683:97240-97259 None:intergenic 55.0%
!!! GGGTTTTGGTGGTGTTGGGT+TGG - tig0020683:97249-97268 None:intergenic 55.0%
! GGGAGAACCCATGTGGGTTT+TGG - tig0020683:97263-97282 None:intergenic 55.0%
GGGTCATTGTTCAGATGCGG+TGG + tig0020683:97862-97881 Msa1384900:intron 55.0%
!! TGGTGTTGGGTTGGTGGTGT+TGG - tig0020683:97240-97259 None:intergenic 55.0%
!!! GGGTTTTGGTGGTGTTGGGT+TGG - tig0020683:97249-97268 None:intergenic 55.0%
! GGGAGAACCCATGTGGGTTT+TGG - tig0020683:97263-97282 None:intergenic 55.0%
GGGTCATTGTTCAGATGCGG+TGG + tig0020683:97862-97881 Msa1384900:intron 55.0%
Chromosome Type Strat End Strand Name
tig0020683 gene 96929 98256 96929 ID=Msa1384900;Name=Msa1384900
tig0020683 mRNA 96929 98256 96929 ID=Msa1384900-mRNA-1;Parent=Msa1384900;Name=Msa1384900-mRNA-1;_AED=0.47;_eAED=0.47;_QI=298|0|0.33|0.33|1|1|3|0|213
tig0020683 exon 96929 97775 96929 ID=Msa1384900-mRNA-1:exon:9322;Parent=Msa1384900-mRNA-1
tig0020683 exon 97999 98073 97999 ID=Msa1384900-mRNA-1:exon:9323;Parent=Msa1384900-mRNA-1
tig0020683 exon 98239 98256 98239 ID=Msa1384900-mRNA-1:exon:9324;Parent=Msa1384900-mRNA-1
tig0020683 five_prime_UTR 96929 97226 96929 ID=Msa1384900-mRNA-1:five_prime_utr;Parent=Msa1384900-mRNA-1
tig0020683 CDS 97227 97775 97227 ID=Msa1384900-mRNA-1:cds;Parent=Msa1384900-mRNA-1
tig0020683 CDS 97999 98073 97999 ID=Msa1384900-mRNA-1:cds;Parent=Msa1384900-mRNA-1
tig0020683 CDS 98239 98256 98239 ID=Msa1384900-mRNA-1:cds;Parent=Msa1384900-mRNA-1
Gene Sequence

>Msa1384900

ATGTCGAAATCCAACACCACCAACCCAACACCACCAAAACCCACATGGGTTCTCCCTTATGTAACTGAAAATCTTCGTGAAGTTTACACCTTAGGTAGAAAACTGGGTCAAGGTCAATTCGGGATCACATATCACTGCACACACAACTCAACGGGTAGAACCTATGCTTGCAAATCAATCTCAAAGAAGAAGCTTTTATGCAAAGAGGATTATGATGATGTTTGGAGAGAGATTCAGATAATGCACCATTTGTCTGAAAATCCAAATGTTGTGAGGATCCATGGTACTTATGAGGATGCGTTTTCTGTTCATTTGGTTATGGAGCTTTGTGAAGGTGGGGAATTGTTTGATAGGATTGTGCAGAAGGGTCATTATAGTGAGAGACAAGCTGCTAAGTTGATTAGGACTATTGTTGAGGTTGTTGAAGCTTGTCATTCTCTTGGTGTTATGCATAGAGACCTTAAACCTGAGAATTTTTTGTTTGATTCTGTTGATGAAGATGCTCTTCTCAAAACTATTGATTTGGGTTGTCTGTTTTTTACAAGCCAGAGAGAAAGGGATAAGAGGGGGATGCTTTGTTCTGATTCTGATTTCATTGCCATTTGCCATTTAGTACTTGGAGAGGTTAATGGCATGGTTTAG
Protein sequence

>Msa1384900

MSKSNTTNPTPPKPTWVLPYVTENLREVYTLGRKLGQGQFGITYHCTHNSTGRTYACKSISKKKLLCKEDYDDVWREIQIMHHLSENPNVVRIHGTYEDAFSVHLVMELCEGGELFDRIVQKGHYSERQAAKLIRTIVEVVEACHSLGVMHRDLKPENFLFDSVDEDALLKTIDLGCLFFTSQRERDKRGMLCSDSDFIAICHLVLGEVNGMV*