AlfalfaGEDB | Msa1385700

M. sativa cultivar zhongmu-4 / Msa1385700

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385700	XP_039683216.1	72.821	390	106	0	1	390	78	467	0.0	626

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385700	sp\|Q9SZL8\|FRS5_ARATH	33.838	396	253	5	1	389	77	470	1.21e-70	239

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385700	A0A396J342	72.564	390	107	0	1	390	79	468	0.0	623

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TFs/TRs:

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Gene ID	Type	Classification
Msa1385700	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385700	MtrunA17_Chr2g0287651	72.564	390	107	0	1	390	79	468	0.0	623
Msa1385700	MtrunA17_Chr1g0203051	43.041	388	219	1	3	390	85	470	7.19e-117	353
Msa1385700	MtrunA17_Chr5g0448761	34.085	399	252	5	1	389	64	461	1.64e-70	236
Msa1385700	MtrunA17_Chr2g0324011	33.501	397	254	4	1	391	14	406	4.70e-70	231
Msa1385700	MtrunA17_Chr3g0082121	34.336	399	239	7	1	390	47	431	1.60e-68	229
Msa1385700	MtrunA17_Chr8g0363841	32.821	390	252	4	5	388	25	410	2.89e-67	225
Msa1385700	MtrunA17_Chr1g0202341	32.242	397	255	8	1	389	55	445	6.57e-66	222
Msa1385700	MtrunA17_Chr5g0441581	29.925	401	261	5	1	396	36	421	2.84e-60	207
Msa1385700	MtrunA17_Chr2g0296781	30.711	394	262	5	1	390	1	387	5.98e-60	206
Msa1385700	MtrunA17_Chr6g0458391	31.139	395	239	8	1	386	229	599	9.09e-59	204

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385700	AT4G38180.1	33.838	396	253	5	1	389	77	470	1.24e-71	239
Msa1385700	AT4G15090.1	31.234	397	262	6	1	390	55	447	1.77e-66	226
Msa1385700	AT4G15090.5	31.234	397	262	6	1	390	55	447	1.77e-66	226
Msa1385700	AT4G15090.3	31.234	397	262	6	1	390	55	447	1.77e-66	226
Msa1385700	AT4G15090.2	31.234	397	262	6	1	390	55	447	1.77e-66	226
Msa1385700	AT4G15090.4	31.234	397	262	6	1	390	55	447	1.77e-66	226
Msa1385700	AT3G22170.2	30.049	406	243	7	1	389	74	455	4.07e-56	197
Msa1385700	AT3G22170.1	30.049	406	243	7	1	389	74	455	4.07e-56	197
Msa1385700	AT3G06250.2	30.457	394	219	10	1	386	194	540	2.54e-52	186
Msa1385700	AT3G06250.1	30.457	394	219	10	1	386	194	540	2.54e-52	186

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Find 75 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATAGACACTTATATG+TGG	0.556264	tig0020776:-8954	Msa1385700:CDS
AAAGGAATGTGGATCAGTTG+AGG	0.611183	tig0020776:+9185	None:intergenic
AACAATAGACACTTATATGT+GGG	0.603700	tig0020776:-8953	Msa1385700:CDS
AACGTTTGAAATGTCTATTT+TGG	0.234421	tig0020776:-9137	Msa1385700:CDS
AAGGGTGGATATCCCGGTGT+TGG	0.494812	tig0020776:-9309	Msa1385700:CDS
AATAAGAACTTGTCATATAA+TGG	0.247315	tig0020776:-9349	Msa1385700:CDS
AATCTGTGCTTTATCTACCT+CGG	0.613894	tig0020776:+9392	None:intergenic
ACAAAATCACCAACGGATAG+TGG	0.461754	tig0020776:+9034	None:intergenic
ACTACGTCTGCGTTGAATTG+TGG	0.498022	tig0020776:-8577	Msa1385700:CDS
ACTTAACATTCAGATAGTTT+AGG	0.298701	tig0020776:+9208	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATAAGTACGGTAAGTGTAA+TGG	-	tig0020776:8606-8625	Msa1385700:CDS	30.0%
AGCATTTATCAAGGTTAGAT+AGG	-	tig0020776:8724-8743	Msa1385700:CDS	30.0%
GAATATTCACAAAAGGAATG+TGG	+	tig0020776:9134-9153	None:intergenic	30.0%
CAAATATAACTGTTTGTGAG+TGG	+	tig0020776:9310-9329	None:intergenic	30.0%
CACTCACAAACAGTTATATT+TGG	-	tig0020776:9308-9327	Msa1385700:CDS	30.0%
CATATGAGAACAAAGAATTG+TGG	-	tig0020776:9663-9682	Msa1385700:CDS	30.0%
TATAAGTACGGTAAGTGTAA+TGG	-	tig0020776:8606-8625	Msa1385700:CDS	30.0%
AGCATTTATCAAGGTTAGAT+AGG	-	tig0020776:8724-8743	Msa1385700:CDS	30.0%
GAATATTCACAAAAGGAATG+TGG	+	tig0020776:9134-9153	None:intergenic	30.0%
CAAATATAACTGTTTGTGAG+TGG	+	tig0020776:9310-9329	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020776	gene	8567	9760	8567	ID=Msa1385700;Name=Msa1385700
tig0020776	mRNA	8567	9760	8567	ID=Msa1385700-mRNA-1;Parent=Msa1385700;Name=Msa1385700-mRNA-1;_AED=0.43;_eAED=0.46;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|397
tig0020776	exon	8567	9760	8567	ID=Msa1385700-mRNA-1:exon:9840;Parent=Msa1385700-mRNA-1
tig0020776	CDS	8567	9760	8567	ID=Msa1385700-mRNA-1:cds;Parent=Msa1385700-mRNA-1

Gene Sequence

>Msa1385700

ATGGAATTTGCGAGTGTTGATGAAGCTTACGATTTTTATTATAAGTACGGTAAGTGTAATGGTTTTGCTGTTAGGAAGAGTGATATTAGGCGCAATGTTAACGGTGAGATTGTAATGAGGCAGTATGTATGCAACAAGCAGGGGTTCAGAGATAAGAAGCATTTATCAAGGTTAGATAGGCAAAGAGATCATCGACGTATCACTCGTACAAAGTGTCCAGCTAGGCTCCGTGTTCACTACAGACCCAAAAAGGGTAGATATGTTGTGTCAATTTTTGAAGAGGGTCACAACCATGAACCTACTCCAACCAATGCTGTGCATTTACACCCTGTTTATCGGAAAATATCCGAGGTAGATAAAGCACAGATTGATGGTCTTCAGTCACACGGAATAAGAACTTGTCATATAATGGGATACATGGTGGCTCAGAAGGGTGGATATCCCGGTGTTGGGTTCACTAAGAAAGATCTGTACAATTACTTTGACAAAAAAATGTGTGCTGTTATTAAGGATGGTGATGTTTCAGCTGCCCTAAACTATCTGAATGTTAAGTCCTCAACTGATCCACATTCCTTTTGTGAATATTCTGCCACTGATGACGAACGTTTGAAATGTCTATTTTGGGCAGATGGCACAAGCAGATCAGATTATTTCTGCTTTGGCGATGTGGTTGCATTTGACACAACGTACAACAAGAACAAATACCACTATCCGTTGGTGATTTTGTCTGGCTGCAACAACCACTCACAAACAGTTATATTTGGTGCTGCATTGGTGATGGATGAAACAATAGACACTTATATGTGGGTGTTGACCAGTTTTCTAGATTGTATGGGAAAAAAACTTCCAAAAGCAGTTGTAACAGATGGTGACGGTTCTATGAGGGAGGCGATAAAGGCGGTTTTACCAAGTACGCGTCATCGTCTATGTGCTTGGCATCTGAACAAGAATGCTATGGACAATGTCAAGAATTCAGCTTTTTTGGAAGGTTTTAAAAAAGCAATGTACTCTAATTTTACGGAGGATGAATTTGAAGAGTTTTGGGGGGACTTGGTGAGGGAAAATGGAATTGAGAACAATCCATGGGTTACCAAAACATATGAGAACAAAGAATTGTGGGCAACTGCATACGTGCGTGACGATTTCTTTGGTGGTATAAGAACTACGTCTGCGTTGAATTGTGGGCATCTTTGA

Protein sequence

>Msa1385700

MEFASVDEAYDFYYKYGKCNGFAVRKSDIRRNVNGEIVMRQYVCNKQGFRDKKHLSRLDRQRDHRRITRTKCPARLRVHYRPKKGRYVVSIFEEGHNHEPTPTNAVHLHPVYRKISEVDKAQIDGLQSHGIRTCHIMGYMVAQKGGYPGVGFTKKDLYNYFDKKMCAVIKDGDVSAALNYLNVKSSTDPHSFCEYSATDDERLKCLFWADGTSRSDYFCFGDVVAFDTTYNKNKYHYPLVILSGCNNHSQTVIFGAALVMDETIDTYMWVLTSFLDCMGKKLPKAVVTDGDGSMREAIKAVLPSTRHRLCAWHLNKNAMDNVKNSAFLEGFKKAMYSNFTEDEFEEFWGDLVRENGIENNPWVTKTYENKELWATAYVRDDFFGGIRTTSALNCGHL*