AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1385700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385700 MtrunA17_Chr2g0287651 72.564 390 107 0 1 390 79 468 0.0 623
Msa1385700 MtrunA17_Chr1g0203051 43.041 388 219 1 3 390 85 470 7.19e-117 353
Msa1385700 MtrunA17_Chr5g0448761 34.085 399 252 5 1 389 64 461 1.64e-70 236
Msa1385700 MtrunA17_Chr2g0324011 33.501 397 254 4 1 391 14 406 4.70e-70 231
Msa1385700 MtrunA17_Chr3g0082121 34.336 399 239 7 1 390 47 431 1.60e-68 229
Msa1385700 MtrunA17_Chr8g0363841 32.821 390 252 4 5 388 25 410 2.89e-67 225
Msa1385700 MtrunA17_Chr1g0202341 32.242 397 255 8 1 389 55 445 6.57e-66 222
Msa1385700 MtrunA17_Chr5g0441581 29.925 401 261 5 1 396 36 421 2.84e-60 207
Msa1385700 MtrunA17_Chr2g0296781 30.711 394 262 5 1 390 1 387 5.98e-60 206
Msa1385700 MtrunA17_Chr6g0458391 31.139 395 239 8 1 386 229 599 9.09e-59 204
Msa1385700 MtrunA17_Chr6g0458391 34.286 140 78 6 1 131 95 229 2.10e-14 75.1
Msa1385700 MtrunA17_Chr1g0207551 30.127 395 264 5 1 389 38 426 1.85e-58 203
Msa1385700 MtrunA17_Chr1g0203721 30.711 394 260 6 3 387 69 458 3.63e-58 203
Msa1385700 MtrunA17_Chr3g0080351 30.542 406 240 9 1 389 80 460 2.57e-57 201
Msa1385700 MtrunA17_Chr1g0198761 30.100 402 264 7 3 389 53 452 7.13e-57 198
Msa1385700 MtrunA17_Chr5g0431001 30.597 402 262 8 3 389 67 466 8.52e-57 194
Msa1385700 MtrunA17_Chr1g0164591 34.304 309 189 4 83 386 8 307 9.55e-57 189
Msa1385700 MtrunA17_Chr2g0276841 29.854 412 247 8 3 389 76 470 3.16e-53 187
Msa1385700 MtrunA17_Chr2g0329031 28.535 396 264 7 1 390 18 400 1.88e-52 186
Msa1385700 MtrunA17_Chr2g0291591 30.380 395 254 8 1 386 68 450 2.76e-52 183
Msa1385700 MtrunA17_Chr6g0477261 32.453 265 175 1 130 390 12 276 9.03e-50 177
Msa1385700 MtrunA17_Chr2g0287061 28.148 405 227 10 2 392 188 542 1.23e-48 176
Msa1385700 MtrunA17_Chr1g0196541 26.119 402 266 7 1 388 1 385 5.12e-44 162
Msa1385700 MtrunA17_Chr2g0291581 28.321 399 257 10 1 391 75 452 1.32e-43 161
Msa1385700 MtrunA17_Chr7g0258861 32.394 284 188 3 1 282 14 295 2.89e-43 153
Msa1385700 MtrunA17_Chr2g0290391 27.206 408 277 7 1 390 55 460 1.78e-42 158
Msa1385700 MtrunA17_Chr2g0294841 28.429 401 270 9 3 389 51 448 5.65e-42 157
Msa1385700 MtrunA17_Chr5g0448511 36.598 194 118 2 206 394 45 238 2.23e-40 150
Msa1385700 MtrunA17_Chr5g0440451 25.412 425 268 12 1 397 47 450 2.52e-37 144
Msa1385700 MtrunA17_Chr3g0118611 30.594 219 147 3 173 386 118 336 3.15e-34 134
Msa1385700 MtrunA17_Chr1g0149131 38.182 110 63 1 278 382 1 110 3.36e-17 77.4
Msa1385700 MtrunA17_Chr8g0389811 39.583 96 58 0 3 98 90 185 5.64e-16 76.3
Msa1385700 MtrunA17_Chr1g0171741 31.496 127 86 1 1 127 137 262 1.18e-15 76.6
Msa1385700 MtrunA17_Chr8g0340801 34.579 107 68 1 110 216 3 107 1.69e-15 72.0
Msa1385700 MtrunA17_Chr2g0308841 40.909 66 39 0 331 396 4 69 5.91e-14 71.6
Msa1385700 MtrunA17_Chr2g0329361 41.414 99 56 2 1 98 65 162 1.45e-12 67.4
Msa1385700 MtrunA17_Chr6g0473421 44.286 70 39 0 3 72 61 130 3.72e-12 63.9
Msa1385700 MtrunA17_Chr7g0238821 33.036 112 70 3 1 111 1 108 3.82e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385700 AT4G38180.1 33.838 396 253 5 1 389 77 470 1.24e-71 239
Msa1385700 AT4G15090.1 31.234 397 262 6 1 390 55 447 1.77e-66 226
Msa1385700 AT4G15090.5 31.234 397 262 6 1 390 55 447 1.77e-66 226
Msa1385700 AT4G15090.3 31.234 397 262 6 1 390 55 447 1.77e-66 226
Msa1385700 AT4G15090.2 31.234 397 262 6 1 390 55 447 1.77e-66 226
Msa1385700 AT4G15090.4 31.234 397 262 6 1 390 55 447 1.77e-66 226
Msa1385700 AT3G22170.2 30.049 406 243 7 1 389 74 455 4.07e-56 197
Msa1385700 AT3G22170.1 30.049 406 243 7 1 389 74 455 4.07e-56 197
Msa1385700 AT3G06250.2 30.457 394 219 10 1 386 194 540 2.54e-52 186
Msa1385700 AT3G06250.1 30.457 394 219 10 1 386 194 540 2.54e-52 186
Msa1385700 AT3G06250.3 30.457 394 219 10 1 386 194 540 2.54e-52 186
Msa1385700 AT1G10240.2 30.402 398 263 8 3 389 54 448 8.54e-52 184
Msa1385700 AT1G10240.1 30.402 398 263 8 3 389 54 448 8.54e-52 184
Msa1385700 AT1G76320.3 29.695 394 255 7 1 386 1 380 1.31e-51 183
Msa1385700 AT1G76320.2 29.695 394 255 7 1 386 1 380 3.06e-51 183
Msa1385700 AT1G76320.1 29.695 394 255 7 1 386 1 380 3.18e-51 183
Msa1385700 AT1G76320.4 29.695 394 255 7 1 386 1 380 3.18e-51 183
Msa1385700 AT5G18960.2 28.316 392 233 9 1 386 215 564 1.42e-46 171
Msa1385700 AT5G18960.1 28.316 392 233 9 1 386 215 564 1.42e-46 171
Msa1385700 AT1G80010.1 28.288 403 263 9 1 388 99 490 1.32e-44 164
Msa1385700 AT1G52520.1 30.280 393 249 9 1 386 89 463 8.57e-44 162
Msa1385700 AT4G19990.5 26.379 417 245 8 2 395 26 403 5.02e-41 154
Msa1385700 AT4G19990.7 26.379 417 245 8 2 395 40 417 6.43e-41 154
Msa1385700 AT4G19990.3 26.379 417 245 8 2 395 26 403 6.48e-41 154
Msa1385700 AT4G19990.4 26.379 417 245 8 2 395 26 403 6.48e-41 154
Msa1385700 AT4G19990.6 26.379 417 245 8 2 395 26 403 8.12e-41 154
Msa1385700 AT4G19990.2 26.379 417 245 8 2 395 26 403 8.12e-41 154
Msa1385700 AT5G28530.3 26.253 419 261 9 3 389 61 463 3.72e-39 149
Msa1385700 AT5G28530.2 26.253 419 261 9 3 389 61 463 3.72e-39 149
Msa1385700 AT5G28530.1 26.253 419 261 9 3 389 61 463 4.54e-39 148
Msa1385700 AT2G27110.2 26.515 396 247 10 1 386 53 414 1.64e-37 144
Msa1385700 AT2G27110.1 26.515 396 247 10 1 386 53 414 1.64e-37 144
Msa1385700 AT4G19990.1 26.801 347 204 6 60 395 39 346 8.47e-35 136
Msa1385700 AT2G27110.3 29.680 219 149 3 173 386 51 269 3.85e-33 131
Msa1385700 AT4G38170.1 30.303 231 144 6 174 393 18 242 1.05e-29 120
Msa1385700 AT2G32250.5 22.449 392 252 6 1 386 42 387 5.17e-29 119
Msa1385700 AT2G32250.8 28.125 192 133 1 200 386 155 346 1.17e-28 118
Msa1385700 AT2G32250.7 28.125 192 133 1 200 386 155 346 1.21e-28 118
Msa1385700 AT2G32250.2 28.125 192 133 1 200 386 196 387 1.59e-28 118
Msa1385700 AT2G32250.4 28.125 192 133 1 200 386 196 387 1.59e-28 118
Msa1385700 AT2G32250.6 28.125 192 133 1 200 386 196 387 1.73e-28 118
Msa1385700 AT2G32250.1 28.125 192 133 1 200 386 196 387 1.73e-28 118
Msa1385700 AT2G32250.3 28.125 192 133 1 200 386 196 387 1.73e-28 118
Msa1385700 AT5G28530.4 23.020 404 230 11 3 389 61 400 2.60e-22 99.4
Msa1385700 AT5G28530.5 23.020 404 230 11 3 389 61 400 2.78e-22 99.4
Msa1385700 AT3G07500.1 41.748 103 56 3 1 102 37 136 7.36e-12 65.1

Find 75 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATGAATTTGAAGAGTTT+TGG 0.187483 tig0020776:-8717 Msa1385700:CDS
AACGTTTGAAATGTCTATTT+TGG 0.234421 tig0020776:-9137 Msa1385700:CDS
CACTCACAAACAGTTATATT+TGG 0.234686 tig0020776:-8997 Msa1385700:CDS
GGGGACTTGGTGAGGGAAAA+TGG 0.236738 tig0020776:-8694 Msa1385700:CDS
AATAAGAACTTGTCATATAA+TGG 0.247315 tig0020776:-9349 Msa1385700:CDS
TGCATTTACACCCTGTTTAT+CGG 0.264525 tig0020776:-9422 Msa1385700:CDS
TGTTCACTACAGACCCAAAA+AGG 0.266221 tig0020776:-9508 Msa1385700:CDS
TTCTTTGTTCTCATATGTTT+TGG 0.278033 tig0020776:+8648 None:intergenic
CCATCTGTTACAACTGCTTT+TGG 0.282718 tig0020776:+8892 None:intergenic
ACTTAACATTCAGATAGTTT+AGG 0.298701 tig0020776:+9208 None:intergenic
CTTAACATTCAGATAGTTTA+GGG 0.312093 tig0020776:+9209 None:intergenic
TTCTATGAGGGAGGCGATAA+AGG 0.334895 tig0020776:-8863 Msa1385700:CDS
CTGTTAGGAAGAGTGATATT+AGG 0.340554 tig0020776:-9671 Msa1385700:CDS
TCCCATACAATCTAGAAAAC+TGG 0.344570 tig0020776:+8924 None:intergenic
CATTGGTTGGAGTAGGTTCA+TGG 0.364482 tig0020776:+9448 None:intergenic
AGATCAGATTATTTCTGCTT+TGG 0.376852 tig0020776:-9099 Msa1385700:CDS
ATAAGAACTTGTCATATAAT+GGG 0.403187 tig0020776:-9348 Msa1385700:CDS
AGCATTTATCAAGGTTAGAT+AGG 0.409294 tig0020776:-9581 Msa1385700:CDS
CATAGACGATGACGCGTACT+TGG 0.409842 tig0020776:+8832 None:intergenic
TATAAGTACGGTAAGTGTAA+TGG 0.430620 tig0020776:-9699 Msa1385700:CDS
GATATTAGGCGCAATGTTAA+CGG 0.449906 tig0020776:-9657 Msa1385700:CDS
TACGTGCGTGACGATTTCTT+TGG 0.453713 tig0020776:-8610 Msa1385700:CDS
CTACGTCTGCGTTGAATTGT+GGG 0.458858 tig0020776:-8576 Msa1385700:CDS
ACAAAATCACCAACGGATAG+TGG 0.461754 tig0020776:+9034 None:intergenic
GGGATACATGGTGGCTCAGA+AGG 0.464555 tig0020776:-9328 Msa1385700:CDS
TAGTGAACACGGAGCCTAGC+TGG 0.466097 tig0020776:+9522 None:intergenic
GAGATAAGAAGCATTTATCA+AGG 0.475640 tig0020776:-9590 Msa1385700:CDS
GTAGATAAAGCACAGATTGA+TGG 0.478198 tig0020776:-9387 Msa1385700:CDS
ATTTGGTGCTGCATTGGTGA+TGG 0.484577 tig0020776:-8980 Msa1385700:CDS
CGCGTCATCGTCTATGTGCT+TGG 0.493517 tig0020776:-8825 Msa1385700:CDS
AAGGGTGGATATCCCGGTGT+TGG 0.494812 tig0020776:-9309 Msa1385700:CDS
ACTACGTCTGCGTTGAATTG+TGG 0.498022 tig0020776:-8577 Msa1385700:CDS
AGGGTGGATATCCCGGTGTT+GGG 0.498763 tig0020776:-9308 Msa1385700:CDS
GTGCGTGACGATTTCTTTGG+TGG 0.499699 tig0020776:-8607 Msa1385700:CDS
GCAGTATGTATGCAACAAGC+AGG 0.502107 tig0020776:-9619 Msa1385700:CDS
ATATGAGAACAAAGAATTGT+GGG 0.511340 tig0020776:-8641 Msa1385700:CDS
AGTGGCAGAATATTCACAAA+AGG 0.514210 tig0020776:+9167 None:intergenic
GCTCAGAAGGGTGGATATCC+CGG 0.515458 tig0020776:-9315 Msa1385700:CDS
AGTTATATTTGGTGCTGCAT+TGG 0.533546 tig0020776:-8986 Msa1385700:CDS
ATGGAATTGAGAACAATCCA+TGG 0.534401 tig0020776:-8675 Msa1385700:CDS
CAGATGGTGACGGTTCTATG+AGG 0.536155 tig0020776:-8876 Msa1385700:CDS
GCATCTGAACAAGAATGCTA+TGG 0.538265 tig0020776:-8803 Msa1385700:CDS
CATATGAGAACAAAGAATTG+TGG 0.552735 tig0020776:-8642 Msa1385700:CDS
ATGTGTGCTGTTATTAAGGA+TGG 0.553864 tig0020776:-9246 Msa1385700:CDS
TTGTCATATAATGGGATACA+TGG 0.555297 tig0020776:-9340 Msa1385700:CDS
AAACAATAGACACTTATATG+TGG 0.556264 tig0020776:-8954 Msa1385700:CDS
TTCTTAGTGAACCCAACACC+GGG 0.562418 tig0020776:+9297 None:intergenic
TGTAAATGCACAGCATTGGT+TGG 0.565762 tig0020776:+9435 None:intergenic
TACATGGTGGCTCAGAAGGG+TGG 0.573659 tig0020776:-9324 Msa1385700:CDS
TTTCAAACGTTCGTCATCAG+TGG 0.583531 tig0020776:+9149 None:intergenic
AGGGTGTAAATGCACAGCAT+TGG 0.584309 tig0020776:+9431 None:intergenic
CAGTATGTATGCAACAAGCA+GGG 0.584535 tig0020776:-9618 Msa1385700:CDS
TTATTTCTGCTTTGGCGATG+TGG 0.587488 tig0020776:-9091 Msa1385700:CDS
CCAAAAGCAGTTGTAACAGA+TGG 0.588696 tig0020776:-8892 Msa1385700:CDS
TTTCTTAGTGAACCCAACAC+CGG 0.593472 tig0020776:+9296 None:intergenic
GAATATTCACAAAAGGAATG+TGG 0.603006 tig0020776:+9174 None:intergenic
AACAATAGACACTTATATGT+GGG 0.603700 tig0020776:-8953 Msa1385700:CDS
AAAGGAATGTGGATCAGTTG+AGG 0.611183 tig0020776:+9185 None:intergenic
GGATACATGGTGGCTCAGAA+GGG 0.612576 tig0020776:-9327 Msa1385700:CDS
AATCTGTGCTTTATCTACCT+CGG 0.613894 tig0020776:+9392 None:intergenic
AGATGGTGACGGTTCTATGA+GGG 0.626993 tig0020776:-8875 Msa1385700:CDS
TGGAATTGAGAACAATCCAT+GGG 0.627348 tig0020776:-8674 Msa1385700:CDS
AGTATGTATGCAACAAGCAG+GGG 0.634341 tig0020776:-9617 Msa1385700:CDS
TGCACAGCATTGGTTGGAGT+AGG 0.638605 tig0020776:+9441 None:intergenic
GAACAAATACCACTATCCGT+TGG 0.644673 tig0020776:-9043 Msa1385700:CDS
CTCGTACAAAGTGTCCAGCT+AGG 0.644688 tig0020776:-9536 Msa1385700:CDS
CAAATATAACTGTTTGTGAG+TGG 0.651904 tig0020776:+8998 None:intergenic
TGGTGACGGTTCTATGAGGG+AGG 0.661344 tig0020776:-8872 Msa1385700:CDS
TATGAGGGAGGCGATAAAGG+CGG 0.662119 tig0020776:-8860 Msa1385700:CDS
TCATATAATGGGATACATGG+TGG 0.669224 tig0020776:-9337 Msa1385700:CDS
CAGCCAGACAAAATCACCAA+CGG 0.675882 tig0020776:+9027 None:intergenic
TTAACGGTGAGATTGTAATG+AGG 0.680367 tig0020776:-9641 Msa1385700:CDS
GCAGTTGTAACAGATGGTGA+CGG 0.686599 tig0020776:-8886 Msa1385700:CDS
TGTTTATCGGAAAATATCCG+AGG 0.704996 tig0020776:-9409 Msa1385700:CDS
ATTGATGGTCTTCAGTCACA+CGG 0.708259 tig0020776:-9372 Msa1385700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACGATTTTTATTATAAGTA+CGG - tig0020776:8594-8613 Msa1385700:CDS 15.0%
!!! TACGATTTTTATTATAAGTA+CGG - tig0020776:8594-8613 Msa1385700:CDS 15.0%
!! AATAAGAACTTGTCATATAA+TGG - tig0020776:8956-8975 Msa1385700:CDS 20.0%
!! ATAAGAACTTGTCATATAAT+GGG - tig0020776:8957-8976 Msa1385700:CDS 20.0%
!! AATAAGAACTTGTCATATAA+TGG - tig0020776:8956-8975 Msa1385700:CDS 20.0%
!! ATAAGAACTTGTCATATAAT+GGG - tig0020776:8957-8976 Msa1385700:CDS 20.0%
!! AAAAATGTGTGCTGTTATTA+AGG - tig0020776:9055-9074 Msa1385700:CDS 25.0%
! CTTAACATTCAGATAGTTTA+GGG + tig0020776:9099-9118 None:intergenic 25.0%
! ACTTAACATTCAGATAGTTT+AGG + tig0020776:9100-9119 None:intergenic 25.0%
!!! AACGTTTGAAATGTCTATTT+TGG - tig0020776:9168-9187 Msa1385700:CDS 25.0%
!!! ACGTTTGAAATGTCTATTTT+GGG - tig0020776:9169-9188 Msa1385700:CDS 25.0%
! AAACAATAGACACTTATATG+TGG - tig0020776:9351-9370 Msa1385700:CDS 25.0%
! AACAATAGACACTTATATGT+GGG - tig0020776:9352-9371 Msa1385700:CDS 25.0%
!! AGCAATGTACTCTAATTTTA+CGG - tig0020776:9565-9584 Msa1385700:CDS 25.0%
!! TTCTTTGTTCTCATATGTTT+TGG + tig0020776:9660-9679 None:intergenic 25.0%
! ATATGAGAACAAAGAATTGT+GGG - tig0020776:9664-9683 Msa1385700:CDS 25.0%
!! AAAAATGTGTGCTGTTATTA+AGG - tig0020776:9055-9074 Msa1385700:CDS 25.0%
! CTTAACATTCAGATAGTTTA+GGG + tig0020776:9099-9118 None:intergenic 25.0%
! ACTTAACATTCAGATAGTTT+AGG + tig0020776:9100-9119 None:intergenic 25.0%
!!! AACGTTTGAAATGTCTATTT+TGG - tig0020776:9168-9187 Msa1385700:CDS 25.0%
!!! ACGTTTGAAATGTCTATTTT+GGG - tig0020776:9169-9188 Msa1385700:CDS 25.0%
! AAACAATAGACACTTATATG+TGG - tig0020776:9351-9370 Msa1385700:CDS 25.0%
! AACAATAGACACTTATATGT+GGG - tig0020776:9352-9371 Msa1385700:CDS 25.0%
!! AGCAATGTACTCTAATTTTA+CGG - tig0020776:9565-9584 Msa1385700:CDS 25.0%
!! TTCTTTGTTCTCATATGTTT+TGG + tig0020776:9660-9679 None:intergenic 25.0%
! ATATGAGAACAAAGAATTGT+GGG - tig0020776:9664-9683 Msa1385700:CDS 25.0%
TATAAGTACGGTAAGTGTAA+TGG - tig0020776:8606-8625 Msa1385700:CDS 30.0%
!! GAGATAAGAAGCATTTATCA+AGG - tig0020776:8715-8734 Msa1385700:CDS 30.0%
AGCATTTATCAAGGTTAGAT+AGG - tig0020776:8724-8743 Msa1385700:CDS 30.0%
! ACAACATATCTACCCTTTTT+GGG + tig0020776:8813-8832 None:intergenic 30.0%
!! TGTTGTGTCAATTTTTGAAG+AGG - tig0020776:8827-8846 Msa1385700:CDS 30.0%
!! GTTGTGTCAATTTTTGAAGA+GGG - tig0020776:8828-8847 Msa1385700:CDS 30.0%
! TTGTCATATAATGGGATACA+TGG - tig0020776:8965-8984 Msa1385700:CDS 30.0%
GAATATTCACAAAAGGAATG+TGG + tig0020776:9134-9153 None:intergenic 30.0%
!! AGATCAGATTATTTCTGCTT+TGG - tig0020776:9206-9225 Msa1385700:CDS 30.0%
CAAATATAACTGTTTGTGAG+TGG + tig0020776:9310-9329 None:intergenic 30.0%
CACTCACAAACAGTTATATT+TGG - tig0020776:9308-9327 Msa1385700:CDS 30.0%
! ACCAGTTTTCTAGATTGTAT+GGG - tig0020776:9380-9399 Msa1385700:CDS 30.0%
!!! TGTCAAGAATTCAGCTTTTT+TGG - tig0020776:9529-9548 Msa1385700:CDS 30.0%
!!! AAGAATTCAGCTTTTTTGGA+AGG - tig0020776:9533-9552 Msa1385700:CDS 30.0%
! AATGTACTCTAATTTTACGG+AGG - tig0020776:9568-9587 Msa1385700:CDS 30.0%
! AGGATGAATTTGAAGAGTTT+TGG - tig0020776:9588-9607 Msa1385700:CDS 30.0%
! GGATGAATTTGAAGAGTTTT+GGG - tig0020776:9589-9608 Msa1385700:CDS 30.0%
! GATGAATTTGAAGAGTTTTG+GGG - tig0020776:9590-9609 Msa1385700:CDS 30.0%
!! ATGAATTTGAAGAGTTTTGG+GGG - tig0020776:9591-9610 Msa1385700:CDS 30.0%
CATATGAGAACAAAGAATTG+TGG - tig0020776:9663-9682 Msa1385700:CDS 30.0%
TATAAGTACGGTAAGTGTAA+TGG - tig0020776:8606-8625 Msa1385700:CDS 30.0%
!! GAGATAAGAAGCATTTATCA+AGG - tig0020776:8715-8734 Msa1385700:CDS 30.0%
AGCATTTATCAAGGTTAGAT+AGG - tig0020776:8724-8743 Msa1385700:CDS 30.0%
! ACAACATATCTACCCTTTTT+GGG + tig0020776:8813-8832 None:intergenic 30.0%
!! TGTTGTGTCAATTTTTGAAG+AGG - tig0020776:8827-8846 Msa1385700:CDS 30.0%
!! GTTGTGTCAATTTTTGAAGA+GGG - tig0020776:8828-8847 Msa1385700:CDS 30.0%
! TTGTCATATAATGGGATACA+TGG - tig0020776:8965-8984 Msa1385700:CDS 30.0%
GAATATTCACAAAAGGAATG+TGG + tig0020776:9134-9153 None:intergenic 30.0%
!! AGATCAGATTATTTCTGCTT+TGG - tig0020776:9206-9225 Msa1385700:CDS 30.0%
CAAATATAACTGTTTGTGAG+TGG + tig0020776:9310-9329 None:intergenic 30.0%
CACTCACAAACAGTTATATT+TGG - tig0020776:9308-9327 Msa1385700:CDS 30.0%
! ACCAGTTTTCTAGATTGTAT+GGG - tig0020776:9380-9399 Msa1385700:CDS 30.0%
!!! TGTCAAGAATTCAGCTTTTT+TGG - tig0020776:9529-9548 Msa1385700:CDS 30.0%
!!! AAGAATTCAGCTTTTTTGGA+AGG - tig0020776:9533-9552 Msa1385700:CDS 30.0%
! AATGTACTCTAATTTTACGG+AGG - tig0020776:9568-9587 Msa1385700:CDS 30.0%
! AGGATGAATTTGAAGAGTTT+TGG - tig0020776:9588-9607 Msa1385700:CDS 30.0%
! GGATGAATTTGAAGAGTTTT+GGG - tig0020776:9589-9608 Msa1385700:CDS 30.0%
! GATGAATTTGAAGAGTTTTG+GGG - tig0020776:9590-9609 Msa1385700:CDS 30.0%
!! ATGAATTTGAAGAGTTTTGG+GGG - tig0020776:9591-9610 Msa1385700:CDS 30.0%
CATATGAGAACAAAGAATTG+TGG - tig0020776:9663-9682 Msa1385700:CDS 30.0%
!!! AGTGTAATGGTTTTGCTGTT+AGG - tig0020776:8619-8638 Msa1385700:CDS 35.0%
CTGTTAGGAAGAGTGATATT+AGG - tig0020776:8634-8653 Msa1385700:CDS 35.0%
GATATTAGGCGCAATGTTAA+CGG - tig0020776:8648-8667 Msa1385700:CDS 35.0%
TTAACGGTGAGATTGTAATG+AGG - tig0020776:8664-8683 Msa1385700:CDS 35.0%
! CACAACATATCTACCCTTTT+TGG + tig0020776:8814-8833 None:intergenic 35.0%
TGCATTTACACCCTGTTTAT+CGG - tig0020776:8883-8902 Msa1385700:CDS 35.0%
! CGGATATTTTCCGATAAACA+GGG + tig0020776:8896-8915 None:intergenic 35.0%
! TCGGATATTTTCCGATAAAC+AGG + tig0020776:8897-8916 None:intergenic 35.0%
TGTTTATCGGAAAATATCCG+AGG - tig0020776:8896-8915 Msa1385700:CDS 35.0%
AATCTGTGCTTTATCTACCT+CGG + tig0020776:8916-8935 None:intergenic 35.0%
GTAGATAAAGCACAGATTGA+TGG - tig0020776:8918-8937 Msa1385700:CDS 35.0%
! TCATATAATGGGATACATGG+TGG - tig0020776:8968-8987 Msa1385700:CDS 35.0%
! ATGTGTGCTGTTATTAAGGA+TGG - tig0020776:9059-9078 Msa1385700:CDS 35.0%
AGTGGCAGAATATTCACAAA+AGG + tig0020776:9141-9160 None:intergenic 35.0%
!! AAATGTCTATTTTGGGCAGA+TGG - tig0020776:9176-9195 Msa1385700:CDS 35.0%
!! AGTTATATTTGGTGCTGCAT+TGG - tig0020776:9319-9338 Msa1385700:CDS 35.0%
! GACCAGTTTTCTAGATTGTA+TGG - tig0020776:9379-9398 Msa1385700:CDS 35.0%
TCCCATACAATCTAGAAAAC+TGG + tig0020776:9384-9403 None:intergenic 35.0%
!!! TGAATTTGAAGAGTTTTGGG+GGG - tig0020776:9592-9611 Msa1385700:CDS 35.0%
ATGGAATTGAGAACAATCCA+TGG - tig0020776:9630-9649 Msa1385700:CDS 35.0%
TGGAATTGAGAACAATCCAT+GGG - tig0020776:9631-9650 Msa1385700:CDS 35.0%
!!! TCATATGTTTTGGTAACCCA+TGG + tig0020776:9650-9669 None:intergenic 35.0%
!!! AGTGTAATGGTTTTGCTGTT+AGG - tig0020776:8619-8638 Msa1385700:CDS 35.0%
CTGTTAGGAAGAGTGATATT+AGG - tig0020776:8634-8653 Msa1385700:CDS 35.0%
GATATTAGGCGCAATGTTAA+CGG - tig0020776:8648-8667 Msa1385700:CDS 35.0%
TTAACGGTGAGATTGTAATG+AGG - tig0020776:8664-8683 Msa1385700:CDS 35.0%
! CACAACATATCTACCCTTTT+TGG + tig0020776:8814-8833 None:intergenic 35.0%
TGCATTTACACCCTGTTTAT+CGG - tig0020776:8883-8902 Msa1385700:CDS 35.0%
! CGGATATTTTCCGATAAACA+GGG + tig0020776:8896-8915 None:intergenic 35.0%
! TCGGATATTTTCCGATAAAC+AGG + tig0020776:8897-8916 None:intergenic 35.0%
TGTTTATCGGAAAATATCCG+AGG - tig0020776:8896-8915 Msa1385700:CDS 35.0%
AATCTGTGCTTTATCTACCT+CGG + tig0020776:8916-8935 None:intergenic 35.0%
GTAGATAAAGCACAGATTGA+TGG - tig0020776:8918-8937 Msa1385700:CDS 35.0%
! TCATATAATGGGATACATGG+TGG - tig0020776:8968-8987 Msa1385700:CDS 35.0%
! ATGTGTGCTGTTATTAAGGA+TGG - tig0020776:9059-9078 Msa1385700:CDS 35.0%
AGTGGCAGAATATTCACAAA+AGG + tig0020776:9141-9160 None:intergenic 35.0%
!! AAATGTCTATTTTGGGCAGA+TGG - tig0020776:9176-9195 Msa1385700:CDS 35.0%
!! AGTTATATTTGGTGCTGCAT+TGG - tig0020776:9319-9338 Msa1385700:CDS 35.0%
! GACCAGTTTTCTAGATTGTA+TGG - tig0020776:9379-9398 Msa1385700:CDS 35.0%
TCCCATACAATCTAGAAAAC+TGG + tig0020776:9384-9403 None:intergenic 35.0%
!!! TGAATTTGAAGAGTTTTGGG+GGG - tig0020776:9592-9611 Msa1385700:CDS 35.0%
ATGGAATTGAGAACAATCCA+TGG - tig0020776:9630-9649 Msa1385700:CDS 35.0%
TGGAATTGAGAACAATCCAT+GGG - tig0020776:9631-9650 Msa1385700:CDS 35.0%
!!! TCATATGTTTTGGTAACCCA+TGG + tig0020776:9650-9669 None:intergenic 35.0%
CAGTATGTATGCAACAAGCA+GGG - tig0020776:8687-8706 Msa1385700:CDS 40.0%
AGTATGTATGCAACAAGCAG+GGG - tig0020776:8688-8707 Msa1385700:CDS 40.0%
!! TTTTGGGTCTGTAGTGAACA+CGG + tig0020776:8797-8816 None:intergenic 40.0%
TGTTCACTACAGACCCAAAA+AGG - tig0020776:8797-8816 Msa1385700:CDS 40.0%
GTTCACTACAGACCCAAAAA+GGG - tig0020776:8798-8817 Msa1385700:CDS 40.0%
!! TGTAAATGCACAGCATTGGT+TGG + tig0020776:8873-8892 None:intergenic 40.0%
! ATTGATGGTCTTCAGTCACA+CGG - tig0020776:8933-8952 Msa1385700:CDS 40.0%
TTTCTTAGTGAACCCAACAC+CGG + tig0020776:9012-9031 None:intergenic 40.0%
AAAGGAATGTGGATCAGTTG+AGG + tig0020776:9123-9142 None:intergenic 40.0%
TTTCAAACGTTCGTCATCAG+TGG + tig0020776:9159-9178 None:intergenic 40.0%
!! TTATTTCTGCTTTGGCGATG+TGG - tig0020776:9214-9233 Msa1385700:CDS 40.0%
GAACAAATACCACTATCCGT+TGG - tig0020776:9262-9281 Msa1385700:CDS 40.0%
ACAAAATCACCAACGGATAG+TGG + tig0020776:9274-9293 None:intergenic 40.0%
!!! TATCCGTTGGTGATTTTGTC+TGG - tig0020776:9275-9294 Msa1385700:CDS 40.0%
! CCATCTGTTACAACTGCTTT+TGG + tig0020776:9416-9435 None:intergenic 40.0%
CCAAAAGCAGTTGTAACAGA+TGG - tig0020776:9413-9432 Msa1385700:CDS 40.0%
GCATCTGAACAAGAATGCTA+TGG - tig0020776:9502-9521 Msa1385700:CDS 40.0%
CAGTATGTATGCAACAAGCA+GGG - tig0020776:8687-8706 Msa1385700:CDS 40.0%
AGTATGTATGCAACAAGCAG+GGG - tig0020776:8688-8707 Msa1385700:CDS 40.0%
!! TTTTGGGTCTGTAGTGAACA+CGG + tig0020776:8797-8816 None:intergenic 40.0%
TGTTCACTACAGACCCAAAA+AGG - tig0020776:8797-8816 Msa1385700:CDS 40.0%
GTTCACTACAGACCCAAAAA+GGG - tig0020776:8798-8817 Msa1385700:CDS 40.0%
!! TGTAAATGCACAGCATTGGT+TGG + tig0020776:8873-8892 None:intergenic 40.0%
! ATTGATGGTCTTCAGTCACA+CGG - tig0020776:8933-8952 Msa1385700:CDS 40.0%
TTTCTTAGTGAACCCAACAC+CGG + tig0020776:9012-9031 None:intergenic 40.0%
AAAGGAATGTGGATCAGTTG+AGG + tig0020776:9123-9142 None:intergenic 40.0%
TTTCAAACGTTCGTCATCAG+TGG + tig0020776:9159-9178 None:intergenic 40.0%
!! TTATTTCTGCTTTGGCGATG+TGG - tig0020776:9214-9233 Msa1385700:CDS 40.0%
GAACAAATACCACTATCCGT+TGG - tig0020776:9262-9281 Msa1385700:CDS 40.0%
ACAAAATCACCAACGGATAG+TGG + tig0020776:9274-9293 None:intergenic 40.0%
!!! TATCCGTTGGTGATTTTGTC+TGG - tig0020776:9275-9294 Msa1385700:CDS 40.0%
! CCATCTGTTACAACTGCTTT+TGG + tig0020776:9416-9435 None:intergenic 40.0%
CCAAAAGCAGTTGTAACAGA+TGG - tig0020776:9413-9432 Msa1385700:CDS 40.0%
GCATCTGAACAAGAATGCTA+TGG - tig0020776:9502-9521 Msa1385700:CDS 40.0%
GCAGTATGTATGCAACAAGC+AGG - tig0020776:8686-8705 Msa1385700:CDS 45.0%
! CATTGGTTGGAGTAGGTTCA+TGG + tig0020776:8860-8879 None:intergenic 45.0%
AGGGTGTAAATGCACAGCAT+TGG + tig0020776:8877-8896 None:intergenic 45.0%
TTCTTAGTGAACCCAACACC+GGG + tig0020776:9011-9030 None:intergenic 45.0%
CAGCCAGACAAAATCACCAA+CGG + tig0020776:9281-9300 None:intergenic 45.0%
!! ATTTGGTGCTGCATTGGTGA+TGG - tig0020776:9325-9344 Msa1385700:CDS 45.0%
GCAGTTGTAACAGATGGTGA+CGG - tig0020776:9419-9438 Msa1385700:CDS 45.0%
!! AGATGGTGACGGTTCTATGA+GGG - tig0020776:9430-9449 Msa1385700:CDS 45.0%
TTCTATGAGGGAGGCGATAA+AGG - tig0020776:9442-9461 Msa1385700:CDS 45.0%
TACGTGCGTGACGATTTCTT+TGG - tig0020776:9695-9714 Msa1385700:CDS 45.0%
ACTACGTCTGCGTTGAATTG+TGG - tig0020776:9728-9747 Msa1385700:CDS 45.0%
CTACGTCTGCGTTGAATTGT+GGG - tig0020776:9729-9748 Msa1385700:CDS 45.0%
GCAGTATGTATGCAACAAGC+AGG - tig0020776:8686-8705 Msa1385700:CDS 45.0%
! CATTGGTTGGAGTAGGTTCA+TGG + tig0020776:8860-8879 None:intergenic 45.0%
AGGGTGTAAATGCACAGCAT+TGG + tig0020776:8877-8896 None:intergenic 45.0%
TTCTTAGTGAACCCAACACC+GGG + tig0020776:9011-9030 None:intergenic 45.0%
CAGCCAGACAAAATCACCAA+CGG + tig0020776:9281-9300 None:intergenic 45.0%
!! ATTTGGTGCTGCATTGGTGA+TGG - tig0020776:9325-9344 Msa1385700:CDS 45.0%
GCAGTTGTAACAGATGGTGA+CGG - tig0020776:9419-9438 Msa1385700:CDS 45.0%
!! AGATGGTGACGGTTCTATGA+GGG - tig0020776:9430-9449 Msa1385700:CDS 45.0%
TTCTATGAGGGAGGCGATAA+AGG - tig0020776:9442-9461 Msa1385700:CDS 45.0%
TACGTGCGTGACGATTTCTT+TGG - tig0020776:9695-9714 Msa1385700:CDS 45.0%
ACTACGTCTGCGTTGAATTG+TGG - tig0020776:9728-9747 Msa1385700:CDS 45.0%
CTACGTCTGCGTTGAATTGT+GGG - tig0020776:9729-9748 Msa1385700:CDS 45.0%
! CTCGTACAAAGTGTCCAGCT+AGG - tig0020776:8769-8788 Msa1385700:CDS 50.0%
!! TGCACAGCATTGGTTGGAGT+AGG + tig0020776:8867-8886 None:intergenic 50.0%
GGATACATGGTGGCTCAGAA+GGG - tig0020776:8978-8997 Msa1385700:CDS 50.0%
!! CAGATGGTGACGGTTCTATG+AGG - tig0020776:9429-9448 Msa1385700:CDS 50.0%
TATGAGGGAGGCGATAAAGG+CGG - tig0020776:9445-9464 Msa1385700:CDS 50.0%
CATAGACGATGACGCGTACT+TGG + tig0020776:9476-9495 None:intergenic 50.0%
!!! TGAAGAGTTTTGGGGGGACT+TGG - tig0020776:9598-9617 Msa1385700:CDS 50.0%
GTGCGTGACGATTTCTTTGG+TGG - tig0020776:9698-9717 Msa1385700:CDS 50.0%
! CTCGTACAAAGTGTCCAGCT+AGG - tig0020776:8769-8788 Msa1385700:CDS 50.0%
!! TGCACAGCATTGGTTGGAGT+AGG + tig0020776:8867-8886 None:intergenic 50.0%
GGATACATGGTGGCTCAGAA+GGG - tig0020776:8978-8997 Msa1385700:CDS 50.0%
!! CAGATGGTGACGGTTCTATG+AGG - tig0020776:9429-9448 Msa1385700:CDS 50.0%
TATGAGGGAGGCGATAAAGG+CGG - tig0020776:9445-9464 Msa1385700:CDS 50.0%
CATAGACGATGACGCGTACT+TGG + tig0020776:9476-9495 None:intergenic 50.0%
!!! TGAAGAGTTTTGGGGGGACT+TGG - tig0020776:9598-9617 Msa1385700:CDS 50.0%
GTGCGTGACGATTTCTTTGG+TGG - tig0020776:9698-9717 Msa1385700:CDS 50.0%
TAGTGAACACGGAGCCTAGC+TGG + tig0020776:8786-8805 None:intergenic 55.0%
GGGATACATGGTGGCTCAGA+AGG - tig0020776:8977-8996 Msa1385700:CDS 55.0%
TACATGGTGGCTCAGAAGGG+TGG - tig0020776:8981-9000 Msa1385700:CDS 55.0%
GCTCAGAAGGGTGGATATCC+CGG - tig0020776:8990-9009 Msa1385700:CDS 55.0%
AAGGGTGGATATCCCGGTGT+TGG - tig0020776:8996-9015 Msa1385700:CDS 55.0%
AGGGTGGATATCCCGGTGTT+GGG - tig0020776:8997-9016 Msa1385700:CDS 55.0%
!! TGGTGACGGTTCTATGAGGG+AGG - tig0020776:9433-9452 Msa1385700:CDS 55.0%
CGCGTCATCGTCTATGTGCT+TGG - tig0020776:9480-9499 Msa1385700:CDS 55.0%
!!! AGTTTTGGGGGGACTTGGTG+AGG - tig0020776:9603-9622 Msa1385700:CDS 55.0%
!!! GTTTTGGGGGGACTTGGTGA+GGG - tig0020776:9604-9623 Msa1385700:CDS 55.0%
!! GGGGACTTGGTGAGGGAAAA+TGG - tig0020776:9611-9630 Msa1385700:CDS 55.0%
TAGTGAACACGGAGCCTAGC+TGG + tig0020776:8786-8805 None:intergenic 55.0%
GGGATACATGGTGGCTCAGA+AGG - tig0020776:8977-8996 Msa1385700:CDS 55.0%
TACATGGTGGCTCAGAAGGG+TGG - tig0020776:8981-9000 Msa1385700:CDS 55.0%
GCTCAGAAGGGTGGATATCC+CGG - tig0020776:8990-9009 Msa1385700:CDS 55.0%
AAGGGTGGATATCCCGGTGT+TGG - tig0020776:8996-9015 Msa1385700:CDS 55.0%
AGGGTGGATATCCCGGTGTT+GGG - tig0020776:8997-9016 Msa1385700:CDS 55.0%
!! TGGTGACGGTTCTATGAGGG+AGG - tig0020776:9433-9452 Msa1385700:CDS 55.0%
CGCGTCATCGTCTATGTGCT+TGG - tig0020776:9480-9499 Msa1385700:CDS 55.0%
!!! AGTTTTGGGGGGACTTGGTG+AGG - tig0020776:9603-9622 Msa1385700:CDS 55.0%
!!! GTTTTGGGGGGACTTGGTGA+GGG - tig0020776:9604-9623 Msa1385700:CDS 55.0%
!! GGGGACTTGGTGAGGGAAAA+TGG - tig0020776:9611-9630 Msa1385700:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0020776 gene 8567 9760 8567 ID=Msa1385700;Name=Msa1385700
tig0020776 mRNA 8567 9760 8567 ID=Msa1385700-mRNA-1;Parent=Msa1385700;Name=Msa1385700-mRNA-1;_AED=0.43;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|397
tig0020776 exon 8567 9760 8567 ID=Msa1385700-mRNA-1:exon:9840;Parent=Msa1385700-mRNA-1
tig0020776 CDS 8567 9760 8567 ID=Msa1385700-mRNA-1:cds;Parent=Msa1385700-mRNA-1
Gene Sequence

>Msa1385700

ATGGAATTTGCGAGTGTTGATGAAGCTTACGATTTTTATTATAAGTACGGTAAGTGTAATGGTTTTGCTGTTAGGAAGAGTGATATTAGGCGCAATGTTAACGGTGAGATTGTAATGAGGCAGTATGTATGCAACAAGCAGGGGTTCAGAGATAAGAAGCATTTATCAAGGTTAGATAGGCAAAGAGATCATCGACGTATCACTCGTACAAAGTGTCCAGCTAGGCTCCGTGTTCACTACAGACCCAAAAAGGGTAGATATGTTGTGTCAATTTTTGAAGAGGGTCACAACCATGAACCTACTCCAACCAATGCTGTGCATTTACACCCTGTTTATCGGAAAATATCCGAGGTAGATAAAGCACAGATTGATGGTCTTCAGTCACACGGAATAAGAACTTGTCATATAATGGGATACATGGTGGCTCAGAAGGGTGGATATCCCGGTGTTGGGTTCACTAAGAAAGATCTGTACAATTACTTTGACAAAAAAATGTGTGCTGTTATTAAGGATGGTGATGTTTCAGCTGCCCTAAACTATCTGAATGTTAAGTCCTCAACTGATCCACATTCCTTTTGTGAATATTCTGCCACTGATGACGAACGTTTGAAATGTCTATTTTGGGCAGATGGCACAAGCAGATCAGATTATTTCTGCTTTGGCGATGTGGTTGCATTTGACACAACGTACAACAAGAACAAATACCACTATCCGTTGGTGATTTTGTCTGGCTGCAACAACCACTCACAAACAGTTATATTTGGTGCTGCATTGGTGATGGATGAAACAATAGACACTTATATGTGGGTGTTGACCAGTTTTCTAGATTGTATGGGAAAAAAACTTCCAAAAGCAGTTGTAACAGATGGTGACGGTTCTATGAGGGAGGCGATAAAGGCGGTTTTACCAAGTACGCGTCATCGTCTATGTGCTTGGCATCTGAACAAGAATGCTATGGACAATGTCAAGAATTCAGCTTTTTTGGAAGGTTTTAAAAAAGCAATGTACTCTAATTTTACGGAGGATGAATTTGAAGAGTTTTGGGGGGACTTGGTGAGGGAAAATGGAATTGAGAACAATCCATGGGTTACCAAAACATATGAGAACAAAGAATTGTGGGCAACTGCATACGTGCGTGACGATTTCTTTGGTGGTATAAGAACTACGTCTGCGTTGAATTGTGGGCATCTTTGA

Protein sequence

>Msa1385700

MEFASVDEAYDFYYKYGKCNGFAVRKSDIRRNVNGEIVMRQYVCNKQGFRDKKHLSRLDRQRDHRRITRTKCPARLRVHYRPKKGRYVVSIFEEGHNHEPTPTNAVHLHPVYRKISEVDKAQIDGLQSHGIRTCHIMGYMVAQKGGYPGVGFTKKDLYNYFDKKMCAVIKDGDVSAALNYLNVKSSTDPHSFCEYSATDDERLKCLFWADGTSRSDYFCFGDVVAFDTTYNKNKYHYPLVILSGCNNHSQTVIFGAALVMDETIDTYMWVLTSFLDCMGKKLPKAVVTDGDGSMREAIKAVLPSTRHRLCAWHLNKNAMDNVKNSAFLEGFKKAMYSNFTEDEFEEFWGDLVRENGIENNPWVTKTYENKELWATAYVRDDFFGGIRTTSALNCGHL*