Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386790 | XP_039688742.1 | 71.277 | 282 | 38 | 6 | 2 | 243 | 5 | 283 | 3.09e-125 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386790 | sp|Q9M9U9|RKD1_ARATH | 65.217 | 115 | 39 | 1 | 122 | 235 | 125 | 239 | 4.27e-46 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386790 | A0A396IDK0 | 72.941 | 255 | 28 | 5 | 27 | 243 | 22 | 273 | 1.70e-115 | 341 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1386790 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386790 | MtrunA17_Chr4g0060761 | 72.941 | 255 | 28 | 5 | 27 | 243 | 22 | 273 | 3.27e-119 | 341 |
| Msa1386790 | MtrunA17_Chr3g0092141 | 53.757 | 173 | 67 | 4 | 79 | 242 | 5 | 173 | 1.02e-52 | 169 |
| Msa1386790 | MtrunA17_Chr3g0127001 | 50.862 | 116 | 48 | 2 | 122 | 237 | 151 | 257 | 3.68e-30 | 113 |
| Msa1386790 | MtrunA17_Chr1g0182631 | 48.276 | 116 | 51 | 1 | 122 | 237 | 124 | 230 | 4.11e-28 | 107 |
| Msa1386790 | MtrunA17_Chr5g0406901 | 35.185 | 162 | 90 | 3 | 82 | 239 | 169 | 319 | 3.13e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386790 | AT1G18790.1 | 65.217 | 115 | 39 | 1 | 122 | 235 | 125 | 239 | 4.34e-47 | 157 |
| Msa1386790 | AT1G74480.1 | 40.928 | 237 | 120 | 6 | 13 | 231 | 8 | 242 | 2.22e-44 | 151 |
| Msa1386790 | AT5G66990.1 | 59.167 | 120 | 47 | 2 | 119 | 236 | 153 | 272 | 1.98e-41 | 143 |
| Msa1386790 | AT5G53040.1 | 55.856 | 111 | 40 | 1 | 125 | 235 | 148 | 249 | 7.74e-34 | 122 |
| Msa1386790 | AT4G35590.2 | 34.667 | 150 | 89 | 3 | 89 | 232 | 157 | 303 | 4.42e-19 | 84.7 |
| Msa1386790 | AT4G35590.1 | 34.667 | 150 | 89 | 3 | 89 | 232 | 207 | 353 | 6.30e-19 | 85.1 |
| Msa1386790 | AT5G16100.2 | 41.176 | 85 | 48 | 1 | 122 | 204 | 351 | 435 | 1.08e-13 | 70.5 |
Find 56 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTGCAGCTTGTGTTAT+TGG | 0.135392 | tig0020872:-12188 | None:intergenic |
| TGACTTACATGTTAGGAAAT+TGG | 0.240258 | tig0020872:-11571 | None:intergenic |
| GTTGATGGATATCGAGAAAT+TGG | 0.245834 | tig0020872:+12481 | Msa1386790:CDS |
| AATTGGCGGTTATATGAAAA+TGG | 0.251270 | tig0020872:-11554 | None:intergenic |
| TGATCTTGCAATTGTATATC+TGG | 0.302877 | tig0020872:-12533 | None:intergenic |
| AACCTTGATCAATAATATTC+AGG | 0.325902 | tig0020872:+12298 | Msa1386790:CDS |
| ACAATGTTGTCTAAGCCTTT+TGG | 0.326924 | tig0020872:-12558 | None:intergenic |
| TTACAAGAAAAGAAAGCTTA+TGG | 0.338403 | tig0020872:+12592 | Msa1386790:CDS |
| CTGCAGACGACTATGAAATT+TGG | 0.367816 | tig0020872:+11976 | Msa1386790:intron |
| ACTTAGTGTTGAAAAGTTGA+TGG | 0.379342 | tig0020872:+12466 | Msa1386790:CDS |
| TATTATTGATCAAGGTTTGC+AGG | 0.383508 | tig0020872:-12292 | None:intergenic |
| ACCCATACACAATGATGGTT+TGG | 0.385554 | tig0020872:+11716 | Msa1386790:CDS |
| TTCCAAACCATCATTGTGTA+TGG | 0.398088 | tig0020872:-11718 | None:intergenic |
| ACACAATGATGGTTTGGAAC+TGG | 0.400074 | tig0020872:+11722 | Msa1386790:CDS |
| AGTTTCATGACTTACATGTT+AGG | 0.403480 | tig0020872:-11578 | None:intergenic |
| TACCTGAATATTATTGATCA+AGG | 0.420609 | tig0020872:-12300 | None:intergenic |
| TATGGTATGGAGAAAGGATT+TGG | 0.421835 | tig0020872:+11999 | Msa1386790:CDS |
| TGATGATAACCTTCCAGCCT+TGG | 0.426088 | tig0020872:-11807 | None:intergenic |
| TGAAATTAACAAAGAGGTTG+TGG | 0.431311 | tig0020872:+12079 | Msa1386790:CDS |
| GGCATTGGTTCAATGTATAG+AGG | 0.437542 | tig0020872:-11786 | None:intergenic |
| ATTTGGTATGGTATGGAGAA+AGG | 0.442668 | tig0020872:+11993 | Msa1386790:CDS |
| TGTATAGAGGGTGATGATGA+GGG | 0.456423 | tig0020872:-11773 | None:intergenic |
| AGAGTATGCCACTTACTTGT+TGG | 0.466970 | tig0020872:+11504 | None:intergenic |
| CATTGAACCAATGCCAAGGC+TGG | 0.480155 | tig0020872:+11794 | Msa1386790:CDS |
| CTATGAAATTTGGTATGGTA+TGG | 0.481213 | tig0020872:+11986 | Msa1386790:CDS |
| AGAGGAAATGAAGCTGGTGG+AGG | 0.485504 | tig0020872:+12505 | Msa1386790:CDS |
| GTTGCAGGAGCTAGGGAAAG+AGG | 0.496134 | tig0020872:+12436 | Msa1386790:intron |
| TGGATTTGGTTGCAGGAGCT+AGG | 0.503102 | tig0020872:+12428 | Msa1386790:intron |
| GGAGTGGAGAGGATTAGTGA+TGG | 0.512454 | tig0020872:+12116 | Msa1386790:CDS |
| GGATTTGGTTGCAGGAGCTA+GGG | 0.512821 | tig0020872:+12429 | Msa1386790:intron |
| GGAGGTAAAGCTAGAAGGAG+TGG | 0.514082 | tig0020872:+12100 | Msa1386790:CDS |
| ATGTATAGAGGGTGATGATG+AGG | 0.517675 | tig0020872:-11774 | None:intergenic |
| GTTGTGGAGGTAAAGCTAGA+AGG | 0.522008 | tig0020872:+12095 | Msa1386790:CDS |
| TAAAAGCTCCAACAAGTAAG+TGG | 0.525627 | tig0020872:-11512 | None:intergenic |
| TAACCTTCCAGCCTTGGCAT+TGG | 0.526844 | tig0020872:-11801 | None:intergenic |
| TATTCACCCATACACAATGA+TGG | 0.527857 | tig0020872:+11711 | Msa1386790:CDS |
| GGATATCGAGAAATTGGAAG+AGG | 0.537710 | tig0020872:+12487 | Msa1386790:CDS |
| GACGACTATGAAATTTGGTA+TGG | 0.546215 | tig0020872:+11981 | Msa1386790:intron |
| CTTACATGTTAGGAAATTGG+CGG | 0.547072 | tig0020872:-11568 | None:intergenic |
| ATTGGAAGAGGAAATGAAGC+TGG | 0.556172 | tig0020872:+12499 | Msa1386790:CDS |
| AATTGCAAGATCATACCAAA+AGG | 0.561321 | tig0020872:+12543 | Msa1386790:CDS |
| TAAAGCTAGAAGGAGTGGAG+AGG | 0.578999 | tig0020872:+12105 | Msa1386790:CDS |
| GAACCAATGCCAAGGCTGGA+AGG | 0.579018 | tig0020872:+11798 | Msa1386790:CDS |
| GTATAGAGGGTGATGATGAG+GGG | 0.582910 | tig0020872:-11772 | None:intergenic |
| TCCAAACCATCATTGTGTAT+GGG | 0.593952 | tig0020872:-11717 | None:intergenic |
| GCATTGGTTCAATGTATAGA+GGG | 0.595733 | tig0020872:-11785 | None:intergenic |
| TGGAAATGAAATTAACAAAG+AGG | 0.597270 | tig0020872:+12073 | Msa1386790:CDS |
| AGCTGCAAGAGAACTGAATG+TGG | 0.601755 | tig0020872:+12199 | Msa1386790:CDS |
| GTAGGGAGTTGGGTATTCGT+AGG | 0.615855 | tig0020872:+12246 | Msa1386790:CDS |
| AATTAACAAAGAGGTTGTGG+AGG | 0.641037 | tig0020872:+12082 | Msa1386790:CDS |
| GTAATACAAAGAATTTGTCA+AGG | 0.643091 | tig0020872:+12138 | Msa1386790:CDS |
| GCTGCAAGAGAACTGAATGT+GGG | 0.643443 | tig0020872:+12200 | Msa1386790:CDS |
| GGGAGTTGGGTATTCGTAGG+TGG | 0.654663 | tig0020872:+12249 | Msa1386790:CDS |
| GGAAGAGGAAATGAAGCTGG+TGG | 0.660598 | tig0020872:+12502 | Msa1386790:CDS |
| CAGGAGCTAGGGAAAGAGGA+TGG | 0.660990 | tig0020872:+12440 | Msa1386790:intron |
| TATACATTGAACCAATGCCA+AGG | 0.667387 | tig0020872:+11790 | Msa1386790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTCTCATTTTAAATTT+TGG | + | tig0020872:11878-11897 | Msa1386790:intron | 10.0% |
| !!! | ATTATTCTCATTTTAAATTT+TGG | + | tig0020872:11878-11897 | Msa1386790:intron | 10.0% |
| !!! | AATTTATTTAATTTTTGCAG+TGG | + | tig0020872:11675-11694 | Msa1386790:intron | 15.0% |
| !!! | AATTTATTTAATTTTTGCAG+TGG | + | tig0020872:11675-11694 | Msa1386790:intron | 15.0% |
| !! | CATGCAAAAATTTATTACTT+CGG | + | tig0020872:11633-11652 | Msa1386790:intron | 20.0% |
| !! | CATATAAAAATACTGAGATA+TGG | - | tig0020872:12168-12187 | None:intergenic | 20.0% |
| !!! | AACATTATGTTGATTGTTTA+TGG | + | tig0020872:12391-12410 | Msa1386790:intron | 20.0% |
| !! | CATGCAAAAATTTATTACTT+CGG | + | tig0020872:11633-11652 | Msa1386790:intron | 20.0% |
| !! | CATATAAAAATACTGAGATA+TGG | - | tig0020872:12168-12187 | None:intergenic | 20.0% |
| !!! | AACATTATGTTGATTGTTTA+TGG | + | tig0020872:12391-12410 | Msa1386790:intron | 20.0% |
| !! | CGAAGTAATAAATTTTTGCA+TGG | - | tig0020872:11635-11654 | None:intergenic | 25.0% |
| ! | CTTATAAATAATTGGGAATG+TGG | - | tig0020872:11846-11865 | None:intergenic | 25.0% |
| !!! | CTCATTTTAAATTTTGGTTG+CGG | + | tig0020872:11884-11903 | Msa1386790:intron | 25.0% |
| ! | TGTTCTTCTGATTAATATTG+TGG | + | tig0020872:11953-11972 | Msa1386790:intron | 25.0% |
| ! | TGGAAATGAAATTAACAAAG+AGG | + | tig0020872:12073-12092 | Msa1386790:CDS | 25.0% |
| ! | GTAATACAAAGAATTTGTCA+AGG | + | tig0020872:12138-12157 | Msa1386790:CDS | 25.0% |
| ! | AACCTTGATCAATAATATTC+AGG | + | tig0020872:12298-12317 | Msa1386790:CDS | 25.0% |
| ! | TACCTGAATATTATTGATCA+AGG | - | tig0020872:12303-12322 | None:intergenic | 25.0% |
| ! | TTATGGTGAGTATATTATGT+TGG | + | tig0020872:12408-12427 | Msa1386790:intron | 25.0% |
| ! | TGAGTATATTATGTTGGATT+TGG | + | tig0020872:12414-12433 | Msa1386790:intron | 25.0% |
| !! | AAGCTTTCTTTTCTTGTAAT+TGG | - | tig0020872:12591-12610 | None:intergenic | 25.0% |
| ! | TTACAAGAAAAGAAAGCTTA+TGG | + | tig0020872:12592-12611 | Msa1386790:CDS | 25.0% |
| !! | CGAAGTAATAAATTTTTGCA+TGG | - | tig0020872:11635-11654 | None:intergenic | 25.0% |
| ! | CTTATAAATAATTGGGAATG+TGG | - | tig0020872:11846-11865 | None:intergenic | 25.0% |
| !!! | CTCATTTTAAATTTTGGTTG+CGG | + | tig0020872:11884-11903 | Msa1386790:intron | 25.0% |
| ! | TGTTCTTCTGATTAATATTG+TGG | + | tig0020872:11953-11972 | Msa1386790:intron | 25.0% |
| ! | TGGAAATGAAATTAACAAAG+AGG | + | tig0020872:12073-12092 | Msa1386790:CDS | 25.0% |
| ! | GTAATACAAAGAATTTGTCA+AGG | + | tig0020872:12138-12157 | Msa1386790:CDS | 25.0% |
| ! | AACCTTGATCAATAATATTC+AGG | + | tig0020872:12298-12317 | Msa1386790:CDS | 25.0% |
| ! | TACCTGAATATTATTGATCA+AGG | - | tig0020872:12303-12322 | None:intergenic | 25.0% |
| ! | TTATGGTGAGTATATTATGT+TGG | + | tig0020872:12408-12427 | Msa1386790:intron | 25.0% |
| ! | TGAGTATATTATGTTGGATT+TGG | + | tig0020872:12414-12433 | Msa1386790:intron | 25.0% |
| !! | AAGCTTTCTTTTCTTGTAAT+TGG | - | tig0020872:12591-12610 | None:intergenic | 25.0% |
| ! | TTACAAGAAAAGAAAGCTTA+TGG | + | tig0020872:12592-12611 | Msa1386790:CDS | 25.0% |
| AATTGGCGGTTATATGAAAA+TGG | - | tig0020872:11557-11576 | None:intergenic | 30.0% | |
| TGACTTACATGTTAGGAAAT+TGG | - | tig0020872:11574-11593 | None:intergenic | 30.0% | |
| AGTTTCATGACTTACATGTT+AGG | - | tig0020872:11581-11600 | None:intergenic | 30.0% | |
| CTATGAAATTTGGTATGGTA+TGG | + | tig0020872:11986-12005 | Msa1386790:CDS | 30.0% | |
| TGAAATTAACAAAGAGGTTG+TGG | + | tig0020872:12079-12098 | Msa1386790:CDS | 30.0% | |
| ACATTTGAAAAAACGGTGTA+GGG | + | tig0020872:12229-12248 | Msa1386790:CDS | 30.0% | |
| TATTATTGATCAAGGTTTGC+AGG | - | tig0020872:12295-12314 | None:intergenic | 30.0% | |
| ! | ACTTAGTGTTGAAAAGTTGA+TGG | + | tig0020872:12466-12485 | Msa1386790:CDS | 30.0% |
| TGATCTTGCAATTGTATATC+TGG | - | tig0020872:12536-12555 | None:intergenic | 30.0% | |
| AATTGCAAGATCATACCAAA+AGG | + | tig0020872:12543-12562 | Msa1386790:CDS | 30.0% | |
| !! | GCTTAGACAACATTGTTTTA+AGG | + | tig0020872:12565-12584 | Msa1386790:CDS | 30.0% |
| AATTGGCGGTTATATGAAAA+TGG | - | tig0020872:11557-11576 | None:intergenic | 30.0% | |
| TGACTTACATGTTAGGAAAT+TGG | - | tig0020872:11574-11593 | None:intergenic | 30.0% | |
| AGTTTCATGACTTACATGTT+AGG | - | tig0020872:11581-11600 | None:intergenic | 30.0% | |
| CTATGAAATTTGGTATGGTA+TGG | + | tig0020872:11986-12005 | Msa1386790:CDS | 30.0% | |
| TGAAATTAACAAAGAGGTTG+TGG | + | tig0020872:12079-12098 | Msa1386790:CDS | 30.0% | |
| ACATTTGAAAAAACGGTGTA+GGG | + | tig0020872:12229-12248 | Msa1386790:CDS | 30.0% | |
| TATTATTGATCAAGGTTTGC+AGG | - | tig0020872:12295-12314 | None:intergenic | 30.0% | |
| ! | ACTTAGTGTTGAAAAGTTGA+TGG | + | tig0020872:12466-12485 | Msa1386790:CDS | 30.0% |
| TGATCTTGCAATTGTATATC+TGG | - | tig0020872:12536-12555 | None:intergenic | 30.0% | |
| AATTGCAAGATCATACCAAA+AGG | + | tig0020872:12543-12562 | Msa1386790:CDS | 30.0% | |
| !! | GCTTAGACAACATTGTTTTA+AGG | + | tig0020872:12565-12584 | Msa1386790:CDS | 30.0% |
| TAAAAGCTCCAACAAGTAAG+TGG | - | tig0020872:11515-11534 | None:intergenic | 35.0% | |
| CTTACATGTTAGGAAATTGG+CGG | - | tig0020872:11571-11590 | None:intergenic | 35.0% | |
| TATTCACCCATACACAATGA+TGG | + | tig0020872:11711-11730 | Msa1386790:CDS | 35.0% | |
| TCCAAACCATCATTGTGTAT+GGG | - | tig0020872:11720-11739 | None:intergenic | 35.0% | |
| TTCCAAACCATCATTGTGTA+TGG | - | tig0020872:11721-11740 | None:intergenic | 35.0% | |
| !! | GCATTGGTTCAATGTATAGA+GGG | - | tig0020872:11788-11807 | None:intergenic | 35.0% |
| TATACATTGAACCAATGCCA+AGG | + | tig0020872:11790-11809 | Msa1386790:CDS | 35.0% | |
| GACGACTATGAAATTTGGTA+TGG | + | tig0020872:11981-12000 | Msa1386790:intron | 35.0% | |
| ATTTGGTATGGTATGGAGAA+AGG | + | tig0020872:11993-12012 | Msa1386790:CDS | 35.0% | |
| TATGGTATGGAGAAAGGATT+TGG | + | tig0020872:11999-12018 | Msa1386790:CDS | 35.0% | |
| ! | GCGTTTGATTCTGAAAAAAG+TGG | + | tig0020872:12053-12072 | Msa1386790:CDS | 35.0% |
| AATTAACAAAGAGGTTGTGG+AGG | + | tig0020872:12082-12101 | Msa1386790:CDS | 35.0% | |
| GCCTCACACATTTGAAAAAA+CGG | + | tig0020872:12222-12241 | Msa1386790:CDS | 35.0% | |
| !!! | ACCGTTTTTTCAAATGTGTG+AGG | - | tig0020872:12226-12245 | None:intergenic | 35.0% |
| CACATTTGAAAAAACGGTGT+AGG | + | tig0020872:12228-12247 | Msa1386790:CDS | 35.0% | |
| ! | ATTATGTTGGATTTGGTTGC+AGG | + | tig0020872:12421-12440 | Msa1386790:intron | 35.0% |
| ! | GTTGATGGATATCGAGAAAT+TGG | + | tig0020872:12481-12500 | Msa1386790:CDS | 35.0% |
| ! | ACAATGTTGTCTAAGCCTTT+TGG | - | tig0020872:12561-12580 | None:intergenic | 35.0% |
| TAAAAGCTCCAACAAGTAAG+TGG | - | tig0020872:11515-11534 | None:intergenic | 35.0% | |
| CTTACATGTTAGGAAATTGG+CGG | - | tig0020872:11571-11590 | None:intergenic | 35.0% | |
| TATTCACCCATACACAATGA+TGG | + | tig0020872:11711-11730 | Msa1386790:CDS | 35.0% | |
| TCCAAACCATCATTGTGTAT+GGG | - | tig0020872:11720-11739 | None:intergenic | 35.0% | |
| TTCCAAACCATCATTGTGTA+TGG | - | tig0020872:11721-11740 | None:intergenic | 35.0% | |
| !! | GCATTGGTTCAATGTATAGA+GGG | - | tig0020872:11788-11807 | None:intergenic | 35.0% |
| TATACATTGAACCAATGCCA+AGG | + | tig0020872:11790-11809 | Msa1386790:CDS | 35.0% | |
| GACGACTATGAAATTTGGTA+TGG | + | tig0020872:11981-12000 | Msa1386790:intron | 35.0% | |
| ATTTGGTATGGTATGGAGAA+AGG | + | tig0020872:11993-12012 | Msa1386790:CDS | 35.0% | |
| TATGGTATGGAGAAAGGATT+TGG | + | tig0020872:11999-12018 | Msa1386790:CDS | 35.0% | |
| ! | GCGTTTGATTCTGAAAAAAG+TGG | + | tig0020872:12053-12072 | Msa1386790:CDS | 35.0% |
| AATTAACAAAGAGGTTGTGG+AGG | + | tig0020872:12082-12101 | Msa1386790:CDS | 35.0% | |
| GCCTCACACATTTGAAAAAA+CGG | + | tig0020872:12222-12241 | Msa1386790:CDS | 35.0% | |
| !!! | ACCGTTTTTTCAAATGTGTG+AGG | - | tig0020872:12226-12245 | None:intergenic | 35.0% |
| CACATTTGAAAAAACGGTGT+AGG | + | tig0020872:12228-12247 | Msa1386790:CDS | 35.0% | |
| ! | ATTATGTTGGATTTGGTTGC+AGG | + | tig0020872:12421-12440 | Msa1386790:intron | 35.0% |
| ! | GTTGATGGATATCGAGAAAT+TGG | + | tig0020872:12481-12500 | Msa1386790:CDS | 35.0% |
| ! | ACAATGTTGTCTAAGCCTTT+TGG | - | tig0020872:12561-12580 | None:intergenic | 35.0% |
| ACCCATACACAATGATGGTT+TGG | + | tig0020872:11716-11735 | Msa1386790:CDS | 40.0% | |
| ! | ACACAATGATGGTTTGGAAC+TGG | + | tig0020872:11722-11741 | Msa1386790:CDS | 40.0% |
| ! | TGTATAGAGGGTGATGATGA+GGG | - | tig0020872:11776-11795 | None:intergenic | 40.0% |
| ! | ATGTATAGAGGGTGATGATG+AGG | - | tig0020872:11777-11796 | None:intergenic | 40.0% |
| !! | GGCATTGGTTCAATGTATAG+AGG | - | tig0020872:11789-11808 | None:intergenic | 40.0% |
| TTGGGAATGTGGCATGTATA+TGG | - | tig0020872:11835-11854 | None:intergenic | 40.0% | |
| CTGCAGACGACTATGAAATT+TGG | + | tig0020872:11976-11995 | Msa1386790:intron | 40.0% | |
| TCTCTTGCAGCTTGTGTTAT+TGG | - | tig0020872:12191-12210 | None:intergenic | 40.0% | |
| AAAAAACGGTGTAGGGAGTT+GGG | + | tig0020872:12236-12255 | Msa1386790:CDS | 40.0% | |
| ! | AGGCTCATGAGTTTTCTATG+GGG | - | tig0020872:12275-12294 | None:intergenic | 40.0% |
| ! | CAGGCTCATGAGTTTTCTAT+GGG | - | tig0020872:12276-12295 | None:intergenic | 40.0% |
| GGATATCGAGAAATTGGAAG+AGG | + | tig0020872:12487-12506 | Msa1386790:CDS | 40.0% | |
| ATTGGAAGAGGAAATGAAGC+TGG | + | tig0020872:12499-12518 | Msa1386790:CDS | 40.0% | |
| ACCCATACACAATGATGGTT+TGG | + | tig0020872:11716-11735 | Msa1386790:CDS | 40.0% | |
| ! | ACACAATGATGGTTTGGAAC+TGG | + | tig0020872:11722-11741 | Msa1386790:CDS | 40.0% |
| ! | TGTATAGAGGGTGATGATGA+GGG | - | tig0020872:11776-11795 | None:intergenic | 40.0% |
| ! | ATGTATAGAGGGTGATGATG+AGG | - | tig0020872:11777-11796 | None:intergenic | 40.0% |
| !! | GGCATTGGTTCAATGTATAG+AGG | - | tig0020872:11789-11808 | None:intergenic | 40.0% |
| TTGGGAATGTGGCATGTATA+TGG | - | tig0020872:11835-11854 | None:intergenic | 40.0% | |
| CTGCAGACGACTATGAAATT+TGG | + | tig0020872:11976-11995 | Msa1386790:intron | 40.0% | |
| TCTCTTGCAGCTTGTGTTAT+TGG | - | tig0020872:12191-12210 | None:intergenic | 40.0% | |
| AAAAAACGGTGTAGGGAGTT+GGG | + | tig0020872:12236-12255 | Msa1386790:CDS | 40.0% | |
| ! | AGGCTCATGAGTTTTCTATG+GGG | - | tig0020872:12275-12294 | None:intergenic | 40.0% |
| ! | CAGGCTCATGAGTTTTCTAT+GGG | - | tig0020872:12276-12295 | None:intergenic | 40.0% |
| GGATATCGAGAAATTGGAAG+AGG | + | tig0020872:12487-12506 | Msa1386790:CDS | 40.0% | |
| ATTGGAAGAGGAAATGAAGC+TGG | + | tig0020872:12499-12518 | Msa1386790:CDS | 40.0% | |
| ! | GTATAGAGGGTGATGATGAG+GGG | - | tig0020872:11775-11794 | None:intergenic | 45.0% |
| TGATGATAACCTTCCAGCCT+TGG | - | tig0020872:11810-11829 | None:intergenic | 45.0% | |
| GTTGTGGAGGTAAAGCTAGA+AGG | + | tig0020872:12095-12114 | Msa1386790:CDS | 45.0% | |
| TAAAGCTAGAAGGAGTGGAG+AGG | + | tig0020872:12105-12124 | Msa1386790:CDS | 45.0% | |
| AGCTGCAAGAGAACTGAATG+TGG | + | tig0020872:12199-12218 | Msa1386790:CDS | 45.0% | |
| GCTGCAAGAGAACTGAATGT+GGG | + | tig0020872:12200-12219 | Msa1386790:CDS | 45.0% | |
| GAAAAAACGGTGTAGGGAGT+TGG | + | tig0020872:12235-12254 | Msa1386790:CDS | 45.0% | |
| ! | GCAGGCTCATGAGTTTTCTA+TGG | - | tig0020872:12277-12296 | None:intergenic | 45.0% |
| ! | GTATAGAGGGTGATGATGAG+GGG | - | tig0020872:11775-11794 | None:intergenic | 45.0% |
| TGATGATAACCTTCCAGCCT+TGG | - | tig0020872:11810-11829 | None:intergenic | 45.0% | |
| GTTGTGGAGGTAAAGCTAGA+AGG | + | tig0020872:12095-12114 | Msa1386790:CDS | 45.0% | |
| TAAAGCTAGAAGGAGTGGAG+AGG | + | tig0020872:12105-12124 | Msa1386790:CDS | 45.0% | |
| AGCTGCAAGAGAACTGAATG+TGG | + | tig0020872:12199-12218 | Msa1386790:CDS | 45.0% | |
| GCTGCAAGAGAACTGAATGT+GGG | + | tig0020872:12200-12219 | Msa1386790:CDS | 45.0% | |
| GAAAAAACGGTGTAGGGAGT+TGG | + | tig0020872:12235-12254 | Msa1386790:CDS | 45.0% | |
| ! | GCAGGCTCATGAGTTTTCTA+TGG | - | tig0020872:12277-12296 | None:intergenic | 45.0% |
| !! | ATATAAACTTATAAATAATT+GGG | - | tig0020872:11853-11872 | None:intergenic | 5.0% |
| !! | TATATAAACTTATAAATAAT+TGG | - | tig0020872:11854-11873 | None:intergenic | 5.0% |
| !!! | GTTATTATTATTATTATTTT+TGG | - | tig0020872:12374-12393 | None:intergenic | 5.0% |
| !! | ATATAAACTTATAAATAATT+GGG | - | tig0020872:11853-11872 | None:intergenic | 5.0% |
| !! | TATATAAACTTATAAATAAT+TGG | - | tig0020872:11854-11873 | None:intergenic | 5.0% |
| !!! | GTTATTATTATTATTATTTT+TGG | - | tig0020872:12374-12393 | None:intergenic | 5.0% |
| CATTGAACCAATGCCAAGGC+TGG | + | tig0020872:11794-11813 | Msa1386790:CDS | 50.0% | |
| TAACCTTCCAGCCTTGGCAT+TGG | - | tig0020872:11804-11823 | None:intergenic | 50.0% | |
| GGAGGTAAAGCTAGAAGGAG+TGG | + | tig0020872:12100-12119 | Msa1386790:CDS | 50.0% | |
| ! | GGAGTGGAGAGGATTAGTGA+TGG | + | tig0020872:12116-12135 | Msa1386790:CDS | 50.0% |
| GTAGGGAGTTGGGTATTCGT+AGG | + | tig0020872:12246-12265 | Msa1386790:CDS | 50.0% | |
| ! | TGGATTTGGTTGCAGGAGCT+AGG | + | tig0020872:12428-12447 | Msa1386790:intron | 50.0% |
| ! | GGATTTGGTTGCAGGAGCTA+GGG | + | tig0020872:12429-12448 | Msa1386790:intron | 50.0% |
| GGAAGAGGAAATGAAGCTGG+TGG | + | tig0020872:12502-12521 | Msa1386790:CDS | 50.0% | |
| AGAGGAAATGAAGCTGGTGG+AGG | + | tig0020872:12505-12524 | Msa1386790:CDS | 50.0% | |
| CATTGAACCAATGCCAAGGC+TGG | + | tig0020872:11794-11813 | Msa1386790:CDS | 50.0% | |
| TAACCTTCCAGCCTTGGCAT+TGG | - | tig0020872:11804-11823 | None:intergenic | 50.0% | |
| GGAGGTAAAGCTAGAAGGAG+TGG | + | tig0020872:12100-12119 | Msa1386790:CDS | 50.0% | |
| ! | GGAGTGGAGAGGATTAGTGA+TGG | + | tig0020872:12116-12135 | Msa1386790:CDS | 50.0% |
| GTAGGGAGTTGGGTATTCGT+AGG | + | tig0020872:12246-12265 | Msa1386790:CDS | 50.0% | |
| ! | TGGATTTGGTTGCAGGAGCT+AGG | + | tig0020872:12428-12447 | Msa1386790:intron | 50.0% |
| ! | GGATTTGGTTGCAGGAGCTA+GGG | + | tig0020872:12429-12448 | Msa1386790:intron | 50.0% |
| GGAAGAGGAAATGAAGCTGG+TGG | + | tig0020872:12502-12521 | Msa1386790:CDS | 50.0% | |
| AGAGGAAATGAAGCTGGTGG+AGG | + | tig0020872:12505-12524 | Msa1386790:CDS | 50.0% | |
| GAACCAATGCCAAGGCTGGA+AGG | + | tig0020872:11798-11817 | Msa1386790:CDS | 55.0% | |
| GGGAGTTGGGTATTCGTAGG+TGG | + | tig0020872:12249-12268 | Msa1386790:CDS | 55.0% | |
| GTTGCAGGAGCTAGGGAAAG+AGG | + | tig0020872:12436-12455 | Msa1386790:intron | 55.0% | |
| CAGGAGCTAGGGAAAGAGGA+TGG | + | tig0020872:12440-12459 | Msa1386790:intron | 55.0% | |
| GAACCAATGCCAAGGCTGGA+AGG | + | tig0020872:11798-11817 | Msa1386790:CDS | 55.0% | |
| GGGAGTTGGGTATTCGTAGG+TGG | + | tig0020872:12249-12268 | Msa1386790:CDS | 55.0% | |
| GTTGCAGGAGCTAGGGAAAG+AGG | + | tig0020872:12436-12455 | Msa1386790:intron | 55.0% | |
| CAGGAGCTAGGGAAAGAGGA+TGG | + | tig0020872:12440-12459 | Msa1386790:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020872 | gene | 11509 | 12634 | 11509 | ID=Msa1386790;Name=Msa1386790 |
| tig0020872 | mRNA | 11509 | 12634 | 11509 | ID=Msa1386790-mRNA-1;Parent=Msa1386790;Name=Msa1386790-mRNA-1;_AED=0.21;_eAED=0.22;_QI=0|0|0|0.75|1|1|4|0|243 |
| tig0020872 | exon | 11509 | 11585 | 11509 | ID=Msa1386790-mRNA-1:exon:10376;Parent=Msa1386790-mRNA-1 |
| tig0020872 | exon | 11695 | 11819 | 11695 | ID=Msa1386790-mRNA-1:exon:10377;Parent=Msa1386790-mRNA-1 |
| tig0020872 | exon | 11982 | 12319 | 11982 | ID=Msa1386790-mRNA-1:exon:10378;Parent=Msa1386790-mRNA-1 |
| tig0020872 | exon | 12443 | 12634 | 12443 | ID=Msa1386790-mRNA-1:exon:10379;Parent=Msa1386790-mRNA-1 |
| tig0020872 | CDS | 11509 | 11585 | 11509 | ID=Msa1386790-mRNA-1:cds;Parent=Msa1386790-mRNA-1 |
| tig0020872 | CDS | 11695 | 11819 | 11695 | ID=Msa1386790-mRNA-1:cds;Parent=Msa1386790-mRNA-1 |
| tig0020872 | CDS | 11982 | 12319 | 11982 | ID=Msa1386790-mRNA-1:cds;Parent=Msa1386790-mRNA-1 |
| tig0020872 | CDS | 12443 | 12634 | 12443 | ID=Msa1386790-mRNA-1:cds;Parent=Msa1386790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
