AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1387300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387300 MtrunA17_Chr3g0102571 81.416 113 16 1 1 113 238 345 9.29e-62 194
Msa1387300 MtrunA17_Chr3g0102601 75.221 113 23 1 1 113 76 183 1.90e-54 170
Msa1387300 MtrunA17_Chr3g0141871 69.298 114 29 2 1 113 190 298 3.62e-49 160
Msa1387300 MtrunA17_Chr8g0378831 68.421 114 30 2 1 113 190 298 9.37e-49 159
Msa1387300 MtrunA17_Chr3g0102581 68.000 100 26 2 15 113 114 208 9.74e-39 129
Msa1387300 MtrunA17_Chr4g0030151 44.737 114 57 2 1 113 196 304 6.22e-30 110
Msa1387300 MtrunA17_Chr4g0045841 46.491 114 54 3 1 113 212 319 9.97e-30 109
Msa1387300 MtrunA17_Chr4g0030231 46.491 114 55 2 1 113 197 305 2.17e-29 108
Msa1387300 MtrunA17_Chr7g0248461 44.737 114 57 2 1 113 195 303 2.71e-29 108
Msa1387300 MtrunA17_Chr8g0348481 42.105 114 60 2 1 113 194 302 6.30e-28 104
Msa1387300 MtrunA17_Chr8g0378871 58.537 82 28 2 33 113 6 82 1.96e-27 98.6
Msa1387300 MtrunA17_Chr8g0387401 42.982 114 59 2 1 113 209 317 6.52e-27 102
Msa1387300 MtrunA17_Chr5g0397261 42.982 114 59 2 1 113 198 306 1.67e-26 100
Msa1387300 MtrunA17_Chr2g0287271 42.105 114 59 3 2 113 187 295 5.37e-22 89.7
Msa1387300 MtrunA17_Chr4g0030241 50.588 85 36 2 1 84 58 137 7.96e-22 85.1
Msa1387300 MtrunA17_Chr8g0392811 37.719 114 64 3 2 113 279 387 7.27e-20 83.6
Msa1387300 MtrunA17_Chr2g0293491 35.897 117 69 2 1 117 160 270 4.99e-19 79.7
Msa1387300 MtrunA17_Chr4g0065851 36.842 114 65 3 2 113 187 295 5.11e-19 81.3
Msa1387300 MtrunA17_Chr6g0482681 39.623 106 57 3 2 105 251 351 7.13e-19 80.9
Msa1387300 MtrunA17_Chr5g0443351 40.566 106 56 3 2 105 184 284 4.24e-18 78.6
Msa1387300 MtrunA17_Chr3g0096631 39.623 106 57 3 2 105 187 287 2.40e-17 76.3
Msa1387300 MtrunA17_Chr2g0284091 39.823 113 58 3 4 112 200 306 4.86e-17 75.1
Msa1387300 MtrunA17_Chr4g0051261 33.333 117 72 2 1 117 160 270 9.33e-17 73.6
Msa1387300 MtrunA17_Chr2g0320011 38.938 113 59 3 4 112 248 354 1.91e-16 73.6
Msa1387300 MtrunA17_Chr3g0093571 39.130 115 61 4 1 113 196 303 2.72e-16 73.2
Msa1387300 MtrunA17_Chr4g0002001 35.714 112 65 3 2 113 178 282 6.57e-16 71.6
Msa1387300 MtrunA17_Chr8g0359091 37.736 106 59 3 2 105 188 288 6.85e-16 72.0
Msa1387300 MtrunA17_Chr3g0093391 38.261 115 62 4 1 113 194 301 1.07e-15 71.6
Msa1387300 MtrunA17_Chr8g0350311 36.937 111 62 3 4 113 299 402 1.25e-15 71.2
Msa1387300 MtrunA17_Chr6g0486031 48.529 68 30 1 1 68 271 333 3.83e-15 70.1
Msa1387300 MtrunA17_Chr8g0390341 50.000 68 29 1 1 68 284 346 5.00e-15 69.7
Msa1387300 MtrunA17_Chr3g0122781 47.761 67 30 1 2 68 573 634 1.24e-14 68.6
Msa1387300 MtrunA17_Chr1g0193081 35.135 111 64 3 4 113 235 338 1.38e-14 68.6
Msa1387300 MtrunA17_Chr7g0270371 36.283 113 62 3 4 112 235 341 1.43e-14 68.2
Msa1387300 MtrunA17_Chr5g0396361 48.611 72 32 1 1 72 297 363 1.69e-14 68.2
Msa1387300 MtrunA17_Chr8g0377071 47.761 67 30 1 2 68 542 603 3.25e-14 67.4
Msa1387300 MtrunA17_Chr2g0314321 35.772 123 55 5 2 105 187 304 3.49e-14 67.4
Msa1387300 MtrunA17_Chr7g0246591 33.333 111 66 3 4 113 301 404 3.95e-14 67.0
Msa1387300 MtrunA17_Chr2g0286421 45.833 72 34 1 1 72 259 325 5.74e-14 66.6
Msa1387300 MtrunA17_Chr2g0277011 37.500 112 56 4 4 111 250 351 6.03e-14 66.6
Msa1387300 MtrunA17_Chr4g0066691 47.059 68 31 1 1 68 261 323 9.27e-14 66.2
Msa1387300 MtrunA17_Chr8g0383451 45.833 72 34 1 1 72 155 221 1.46e-13 65.5
Msa1387300 MtrunA17_Chr1g0187371 32.456 114 66 3 2 113 183 287 1.77e-13 65.1
Msa1387300 MtrunA17_Chr5g0409421 34.234 111 68 2 2 112 156 261 1.82e-13 65.1
Msa1387300 MtrunA17_Chr3g0130781 48.485 66 31 1 5 67 191 256 2.18e-13 65.1
Msa1387300 MtrunA17_Chr1g0194201 35.088 114 60 4 4 113 235 338 2.19e-13 65.1
Msa1387300 MtrunA17_Chr4g0057791 46.269 67 31 1 2 68 377 438 2.78e-13 64.7
Msa1387300 MtrunA17_Chr3g0099951 31.304 115 64 3 3 113 172 275 3.26e-13 64.3
Msa1387300 MtrunA17_Chr6g0483151 31.624 117 65 3 1 113 168 273 3.27e-13 64.3
Msa1387300 MtrunA17_Chr3g0131861 48.529 68 30 1 1 68 254 316 4.43e-13 64.3
Msa1387300 MtrunA17_Chr4g0061141 47.059 68 31 1 1 68 262 324 4.94e-13 63.9
Msa1387300 MtrunA17_Chr6g0453711 45.588 68 32 1 1 68 267 329 5.32e-13 63.9
Msa1387300 MtrunA17_Chr2g0317501 44.444 72 35 1 1 72 291 357 5.41e-13 63.9
Msa1387300 MtrunA17_Chr2g0324461 44.444 72 35 1 1 72 298 364 6.00e-13 63.9
Msa1387300 MtrunA17_Chr7g0218071 44.118 68 33 1 1 68 277 339 1.12e-12 63.2
Msa1387300 MtrunA17_Chr7g0273601 49.153 59 28 1 1 59 264 320 1.27e-12 62.8
Msa1387300 MtrunA17_Chr1g0191221 36.000 125 65 5 1 116 279 397 1.27e-12 62.8
Msa1387300 MtrunA17_Chr1g0201571 52.830 53 25 0 1 53 283 335 1.36e-12 62.8
Msa1387300 MtrunA17_Chr8g0358921 32.743 113 70 2 5 117 212 318 1.89e-12 62.0
Msa1387300 MtrunA17_Chr4g0040141 41.667 72 37 1 1 72 286 352 2.12e-12 62.4
Msa1387300 MtrunA17_Chr8g0385971 45.763 59 30 1 1 59 247 303 1.22e-11 60.1
Msa1387300 MtrunA17_Chr8g0339221 32.456 114 69 3 2 113 156 263 2.03e-11 59.3
Msa1387300 MtrunA17_Chr8g0369451 31.532 111 71 2 2 112 156 261 6.06e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387300 AT2G18170.1 70.175 114 28 2 1 113 190 298 2.32e-51 166
Msa1387300 AT4G36450.1 67.544 114 31 2 1 113 187 295 4.58e-49 160
Msa1387300 AT1G59580.2 67.544 114 31 2 1 113 190 298 2.32e-47 156
Msa1387300 AT1G59580.1 67.544 114 31 2 1 113 190 298 2.32e-47 156
Msa1387300 AT1G10210.2 65.789 114 33 2 1 113 190 298 3.35e-45 150
Msa1387300 AT1G10210.3 65.789 114 33 2 1 113 190 298 3.35e-45 150
Msa1387300 AT1G10210.1 65.789 114 33 2 1 113 190 298 3.35e-45 150
Msa1387300 AT3G45640.1 48.246 114 53 2 1 113 195 303 5.26e-31 113
Msa1387300 AT1G07880.2 46.491 114 55 2 1 113 190 298 3.29e-30 110
Msa1387300 AT4G11330.1 47.368 114 54 2 1 113 200 308 1.05e-29 109
Msa1387300 AT3G59790.1 42.478 113 60 1 1 113 217 324 3.57e-27 103
Msa1387300 AT4G01370.1 42.982 114 59 2 1 113 200 308 6.15e-27 102
Msa1387300 AT2G43790.1 42.478 113 60 1 1 113 220 327 2.73e-26 100
Msa1387300 AT1G01560.3 42.105 114 60 2 1 113 197 305 2.95e-26 100
Msa1387300 AT2G46070.2 42.105 114 60 2 1 113 198 306 4.15e-26 99.8
Msa1387300 AT1G01560.2 42.105 114 60 2 1 113 197 305 4.62e-26 100
Msa1387300 AT2G46070.1 42.105 114 60 2 1 113 198 306 7.68e-26 99.8
Msa1387300 AT2G46070.3 42.105 114 60 2 1 113 232 340 1.00e-25 99.8
Msa1387300 AT2G01450.3 42.105 114 59 3 2 113 178 286 7.39e-22 89.4
Msa1387300 AT2G01450.1 42.105 114 59 3 2 113 178 286 7.39e-22 89.4
Msa1387300 AT2G01450.2 42.105 114 59 3 2 113 178 286 7.39e-22 89.4
Msa1387300 AT2G01450.4 42.105 114 59 3 2 113 178 286 7.39e-22 89.4
Msa1387300 AT5G19010.1 42.105 114 59 3 2 113 187 295 1.63e-21 88.6
Msa1387300 AT1G73670.1 40.351 114 61 3 2 113 252 360 4.07e-20 84.7
Msa1387300 AT3G14720.1 41.509 106 55 3 2 105 187 287 1.92e-19 82.8
Msa1387300 AT3G14720.2 41.509 106 55 3 2 105 187 287 2.07e-19 82.4
Msa1387300 AT3G14720.3 41.509 106 55 3 2 105 187 287 2.07e-19 82.4
Msa1387300 AT3G48750.1 38.053 113 64 2 1 113 160 266 6.08e-19 80.1
Msa1387300 AT1G18150.3 41.509 106 55 3 2 105 266 366 2.54e-18 79.7
Msa1387300 AT1G18150.2 41.509 106 55 3 2 105 266 366 2.54e-18 79.7
Msa1387300 AT1G18150.1 41.509 106 55 3 2 105 266 366 2.54e-18 79.7
Msa1387300 AT2G42880.1 40.566 106 56 3 2 105 187 287 5.93e-18 78.6
Msa1387300 AT2G42880.2 40.566 106 56 3 2 105 187 287 6.71e-18 78.2
Msa1387300 AT1G07880.1 56.923 65 23 1 1 65 190 249 9.29e-18 76.3
Msa1387300 AT1G01560.4 52.308 65 26 1 1 65 197 256 1.74e-17 75.9
Msa1387300 AT1G01560.1 52.308 65 26 1 1 65 197 256 1.74e-17 75.9
Msa1387300 AT1G53510.1 39.623 106 57 3 2 105 187 287 3.28e-17 76.3
Msa1387300 AT5G63370.7 41.304 92 47 2 2 91 459 545 5.07e-17 75.9
Msa1387300 AT5G63370.8 41.304 92 47 2 2 91 459 545 5.07e-17 75.9
Msa1387300 AT5G63370.4 41.304 92 47 2 2 91 459 545 5.07e-17 75.9
Msa1387300 AT5G63370.6 41.304 92 47 2 2 91 459 545 5.07e-17 75.9
Msa1387300 AT5G63370.1 41.304 92 47 2 2 91 459 545 5.07e-17 75.9
Msa1387300 AT5G63370.2 41.304 92 47 2 2 91 325 411 5.48e-17 75.5
Msa1387300 AT5G63370.3 41.304 92 47 2 2 91 325 411 5.48e-17 75.5
Msa1387300 AT5G63370.5 41.304 92 47 2 2 91 459 545 5.62e-17 75.9
Msa1387300 AT5G63370.10 41.304 92 47 2 2 91 459 545 5.62e-17 75.9
Msa1387300 AT5G63370.9 41.304 92 47 2 2 91 325 411 5.95e-17 75.5
Msa1387300 AT5G10270.1 40.000 115 60 3 1 113 197 304 7.18e-17 75.5
Msa1387300 AT3G18040.2 36.792 106 60 3 2 105 97 197 1.51e-16 74.3
Msa1387300 AT3G18040.5 36.792 106 60 3 2 105 180 280 1.69e-16 74.3
Msa1387300 AT3G18040.1 36.792 106 60 3 2 105 185 285 1.71e-16 74.3
Msa1387300 AT3G18040.4 36.792 106 60 3 2 105 294 394 1.88e-16 74.3
Msa1387300 AT3G18040.3 36.792 106 60 3 2 105 294 394 2.09e-16 73.9
Msa1387300 AT2G30980.1 38.938 113 59 3 4 112 232 338 2.41e-16 73.6
Msa1387300 AT1G06390.2 38.938 113 59 3 4 112 230 336 3.14e-16 73.6
Msa1387300 AT1G06390.1 38.938 113 59 3 4 112 230 336 3.14e-16 73.6
Msa1387300 AT5G64960.1 40.870 115 59 4 1 113 197 304 4.75e-16 73.2
Msa1387300 AT5G64960.2 40.870 115 59 4 1 113 144 251 7.28e-16 72.4
Msa1387300 AT4G18710.1 38.053 113 60 3 4 112 200 306 8.24e-16 72.0
Msa1387300 AT1G66750.1 36.752 117 59 4 1 113 167 272 1.21e-15 71.6
Msa1387300 AT3G54180.1 50.820 61 29 1 2 62 176 235 2.34e-15 70.5
Msa1387300 AT2G38620.4 35.965 114 58 3 2 111 116 218 2.56e-15 69.7
Msa1387300 AT2G38620.3 44.776 67 36 1 2 68 178 243 3.02e-15 69.7
Msa1387300 AT2G38620.1 44.776 67 36 1 2 68 178 243 3.02e-15 69.7
Msa1387300 AT1G20930.1 36.607 112 64 3 2 113 181 285 3.10e-15 70.1
Msa1387300 AT2G38620.2 49.180 61 30 1 2 62 178 237 3.73e-15 70.1
Msa1387300 AT3G05840.2 37.168 113 61 3 4 112 233 339 7.51e-15 69.3
Msa1387300 AT3G05840.1 37.168 113 61 3 4 112 233 339 7.51e-15 69.3
Msa1387300 AT5G26751.1 37.168 113 61 3 4 112 229 335 8.15e-15 69.3
Msa1387300 AT5G63610.1 47.887 71 34 1 5 72 196 266 1.06e-14 69.3
Msa1387300 AT1G76540.1 34.821 112 66 2 2 113 179 283 1.06e-14 68.6
Msa1387300 AT3G61160.5 34.234 111 65 3 4 113 262 365 1.47e-14 68.6
Msa1387300 AT5G14640.1 37.168 113 61 3 4 112 234 340 1.49e-14 68.6
Msa1387300 AT5G14640.2 37.168 113 61 3 4 112 234 340 1.49e-14 68.6
Msa1387300 AT3G61160.1 34.234 111 65 3 4 113 262 365 1.65e-14 68.6
Msa1387300 AT3G61160.4 34.234 111 65 3 4 113 262 365 1.72e-14 68.6
Msa1387300 AT3G61160.2 34.234 111 65 3 4 113 269 372 1.82e-14 68.6
Msa1387300 AT4G13020.4 37.719 114 62 3 2 113 156 262 2.17e-14 68.2
Msa1387300 AT1G54610.1 47.222 72 33 1 1 72 275 341 2.28e-14 68.2
Msa1387300 AT1G54610.3 47.222 72 33 1 1 72 275 341 2.28e-14 68.2
Msa1387300 AT1G54610.2 47.222 72 33 1 1 72 275 341 2.28e-14 68.2
Msa1387300 AT4G13020.1 37.719 114 62 3 2 113 156 262 2.31e-14 68.2
Msa1387300 AT4G13020.7 37.719 114 62 3 2 113 156 262 2.32e-14 68.2
Msa1387300 AT4G13020.6 37.719 114 62 3 2 113 156 262 2.37e-14 68.2
Msa1387300 AT1G09840.11 38.393 112 55 4 4 111 116 217 2.40e-14 67.4
Msa1387300 AT1G09840.3 38.393 112 55 4 4 111 243 344 2.42e-14 68.2
Msa1387300 AT1G09840.7 38.393 112 55 4 4 111 243 344 2.42e-14 68.2
Msa1387300 AT1G09840.10 38.393 112 55 4 4 111 243 344 2.42e-14 68.2
Msa1387300 AT1G09840.6 38.393 112 55 4 4 111 243 344 2.42e-14 68.2
Msa1387300 AT1G09840.4 38.393 112 55 4 4 111 243 344 2.42e-14 68.2
Msa1387300 AT1G09840.1 38.393 112 55 4 4 111 243 344 2.42e-14 68.2
Msa1387300 AT1G09840.9 38.393 112 55 4 4 111 243 344 2.42e-14 68.2
Msa1387300 AT1G09840.5 38.393 112 55 4 4 111 243 344 2.42e-14 68.2
Msa1387300 AT1G09840.8 38.393 112 55 4 4 111 243 344 2.42e-14 68.2
Msa1387300 AT1G09840.2 38.393 112 55 4 4 111 243 344 2.42e-14 68.2
Msa1387300 AT4G13020.2 37.719 114 62 3 2 113 164 270 2.49e-14 68.2
Msa1387300 AT4G13020.3 37.719 114 62 3 2 113 164 270 2.49e-14 68.2
Msa1387300 AT4G13020.5 37.719 114 62 3 2 113 165 271 2.54e-14 68.2
Msa1387300 AT4G13020.8 37.719 114 62 3 2 113 165 271 2.64e-14 67.8
Msa1387300 AT1G57870.1 38.393 112 55 4 4 111 242 343 2.66e-14 67.8
Msa1387300 AT1G57870.4 38.393 112 55 4 4 111 242 343 2.66e-14 67.8
Msa1387300 AT1G57870.2 38.393 112 55 4 4 111 242 343 2.66e-14 67.8
Msa1387300 AT4G00720.1 36.283 113 62 3 4 112 298 404 2.88e-14 67.8
Msa1387300 AT1G57870.3 38.393 112 55 4 4 111 242 343 2.88e-14 67.8
Msa1387300 AT4G19110.1 37.391 115 63 4 1 113 155 262 3.12e-14 67.8
Msa1387300 AT4G19110.2 37.391 115 63 4 1 113 155 262 3.13e-14 67.8
Msa1387300 AT4G19110.3 37.391 115 63 4 1 113 99 206 3.40e-14 67.8
Msa1387300 AT4G22940.1 33.036 112 69 3 1 112 261 366 3.94e-14 67.4
Msa1387300 AT4G22940.2 33.036 112 69 3 1 112 261 366 4.32e-14 67.4
Msa1387300 AT5G45430.1 35.965 114 64 4 2 113 156 262 4.59e-14 67.4
Msa1387300 AT5G45430.2 35.965 114 64 4 2 113 156 262 4.91e-14 67.4
Msa1387300 AT1G71530.2 41.758 91 47 2 1 90 304 389 5.39e-14 67.0
Msa1387300 AT1G71530.3 41.758 91 47 2 1 90 304 389 5.61e-14 67.0
Msa1387300 AT1G71530.1 41.758 91 47 2 1 90 304 389 7.00e-14 67.0
Msa1387300 AT5G50860.2 47.059 68 31 1 1 68 271 333 1.14e-13 66.2
Msa1387300 AT5G50860.1 47.059 68 31 1 1 68 271 333 1.30e-13 66.2
Msa1387300 AT1G18040.1 30.973 113 71 3 1 113 166 271 1.76e-13 65.5
Msa1387300 AT1G67580.1 47.761 67 30 1 2 68 563 624 1.84e-13 65.9
Msa1387300 AT1G67580.2 47.761 67 30 1 2 68 563 624 1.84e-13 65.9
Msa1387300 AT1G33770.1 37.624 101 47 2 1 101 298 382 2.41e-13 65.5
Msa1387300 AT3G61160.3 35.052 97 56 2 4 100 262 351 2.82e-13 65.1
Msa1387300 AT3G61160.6 35.052 97 56 2 4 100 269 358 3.10e-13 64.7
Msa1387300 AT5G39420.1 47.059 68 31 1 1 68 262 324 4.05e-13 64.7
Msa1387300 AT1G74330.3 44.444 72 35 1 1 72 280 346 4.05e-13 64.7
Msa1387300 AT1G74330.1 44.444 72 35 1 1 72 280 346 4.25e-13 64.7
Msa1387300 AT4G10010.1 47.222 72 33 1 1 72 133 199 4.32e-13 64.7
Msa1387300 AT1G74330.2 44.444 72 35 1 1 72 280 346 4.54e-13 64.7
Msa1387300 AT4G10010.2 39.474 114 61 3 1 111 313 421 4.83e-13 64.3
Msa1387300 AT1G03740.2 37.634 93 52 2 1 92 370 457 7.90e-13 63.9
Msa1387300 AT1G03740.1 37.634 93 52 2 1 92 370 457 8.42e-13 63.9
Msa1387300 AT3G01085.1 38.372 86 46 2 1 84 272 352 8.45e-13 63.9
Msa1387300 AT3G01085.2 38.372 86 46 2 1 84 272 352 8.45e-13 63.9
Msa1387300 AT3G01085.3 38.372 86 46 2 1 84 272 352 9.05e-13 63.5
Msa1387300 AT1G53050.2 38.095 105 56 4 1 102 291 389 9.23e-13 63.5
Msa1387300 AT1G53050.1 38.095 105 56 4 1 102 291 389 9.23e-13 63.5
Msa1387300 AT1G18670.2 44.444 72 35 1 1 72 289 355 1.01e-12 63.5
Msa1387300 AT1G18670.3 44.444 72 35 1 1 72 289 355 1.08e-12 63.5
Msa1387300 AT1G18670.1 44.444 72 35 1 1 72 289 355 1.10e-12 63.5
Msa1387300 AT4G18710.2 38.272 81 45 1 4 84 194 269 1.47e-12 62.4
Msa1387300 AT1G57700.1 44.118 68 33 1 1 68 303 365 3.55e-12 62.0
Msa1387300 AT1G09600.1 44.118 68 33 1 1 68 320 382 4.05e-12 62.0
Msa1387300 AT1G71530.4 53.061 49 23 0 1 49 304 352 4.96e-12 61.6
Msa1387300 AT1G73690.1 30.435 115 69 3 1 113 165 270 4.99e-12 61.6
Msa1387300 AT4G28980.3 33.945 109 56 3 1 109 289 381 5.97e-12 61.2
Msa1387300 AT4G28980.1 33.945 109 56 3 1 109 289 381 5.97e-12 61.2
Msa1387300 AT4G28980.2 33.945 109 56 3 1 109 289 381 5.97e-12 61.2
Msa1387300 AT4G01595.1 36.471 85 48 2 22 105 20 99 6.42e-12 58.9
Msa1387300 AT5G44290.7 37.634 93 52 2 1 92 294 381 7.75e-12 60.8
Msa1387300 AT5G44290.6 37.634 93 52 2 1 92 294 381 8.85e-12 60.8
Msa1387300 AT3G05050.3 44.118 68 33 1 1 68 295 357 8.88e-12 60.8
Msa1387300 AT3G05050.2 44.118 68 33 1 1 68 295 357 8.88e-12 60.8
Msa1387300 AT3G05050.1 44.118 68 33 1 1 68 295 357 8.88e-12 60.8
Msa1387300 AT5G44290.2 37.634 93 52 2 1 92 294 381 9.68e-12 60.8
Msa1387300 AT5G44290.5 37.634 93 52 2 1 92 294 381 9.68e-12 60.8
Msa1387300 AT5G44290.4 37.634 93 52 2 1 92 294 381 9.68e-12 60.8
Msa1387300 AT5G44290.1 37.634 93 52 2 1 92 294 381 9.68e-12 60.8
Msa1387300 AT5G44290.3 37.634 93 52 2 1 92 294 381 9.68e-12 60.8

Find 22 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTAATCATAAGTGTTCT+TGG 0.281177 tig0020883:-80712 Msa1387300:CDS
CACTTATGATTAGTTTCATT+TGG 0.344149 tig0020883:+80719 None:intergenic
CTATTAGGATGTAGGAATTA+CGG 0.398303 tig0020883:-80855 Msa1387300:CDS
AAGTGTGTCCCCTTTGTATA+GGG 0.407075 tig0020883:+80625 None:intergenic
GAAGTGTGTCCCCTTTGTAT+AGG 0.412759 tig0020883:+80624 None:intergenic
CGAGCTCCAGAGCTTCTATT+AGG 0.418427 tig0020883:-80870 Msa1387300:CDS
CTACATCCTAATAGAAGCTC+TGG 0.456015 tig0020883:+80864 None:intergenic
AAATCACTTCCCTATACAAA+GGG 0.459253 tig0020883:-80634 Msa1387300:CDS
GATTAGTTTCATTTGGTGCA+TGG 0.487775 tig0020883:+80726 None:intergenic
CAGAGCTTCTATTAGGATGT+AGG 0.513214 tig0020883:-80863 Msa1387300:CDS
TCTATCGATATGTGCTCCGT+TGG 0.515765 tig0020883:-80828 Msa1387300:CDS
TGTAACAAATCAATGGCCAA+TGG 0.520758 tig0020883:+80577 None:intergenic
AAGTGATTTGATGAACTCCT+TGG 0.526733 tig0020883:+80648 None:intergenic
CAAACTCAAGATCAGACTCT+TGG 0.538665 tig0020883:+80686 None:intergenic
AACGGAGCACATATCGATAG+AGG 0.540646 tig0020883:+80830 None:intergenic
TGGCCAATGGATCTGCTTGT+GGG 0.553265 tig0020883:+80590 None:intergenic
CAAATCACTTCCCTATACAA+AGG 0.558409 tig0020883:-80635 Msa1387300:CDS
ATACCCACAAGCAGATCCAT+TGG 0.573144 tig0020883:-80593 Msa1387300:CDS
ATGGCCAATGGATCTGCTTG+TGG 0.589179 tig0020883:+80589 None:intergenic
CTCAGCGAAAATGCATCCAA+CGG 0.603631 tig0020883:+80812 None:intergenic
CAGAGTATGTTGTCACACGC+TGG 0.639721 tig0020883:-80896 Msa1387300:CDS
AATCACTTCCCTATACAAAG+GGG 0.713968 tig0020883:-80633 Msa1387300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTGTAACAAATCAA+TGG + tig0020883:80891-80910 None:intergenic 15.0%
!!! TTTTTCTAATAATAACTCCT+TGG + tig0020883:80709-80728 None:intergenic 20.0%
!!! CACTTATGATTAGTTTCATT+TGG + tig0020883:80742-80761 None:intergenic 25.0%
! AAACTAATCATAAGTGTTCT+TGG - tig0020883:80746-80765 Msa1387300:intron 25.0%
CTATTAGGATGTAGGAATTA+CGG - tig0020883:80603-80622 Msa1387300:CDS 30.0%
TGTAGTTAATCCAAAAACCA+AGG - tig0020883:80793-80812 Msa1387300:CDS 30.0%
AAATCACTTCCCTATACAAA+GGG - tig0020883:80824-80843 Msa1387300:CDS 30.0%
!!! ACTCCTTGGAATTTTTTGCA+GGG + tig0020883:80695-80714 None:intergenic 35.0%
!!! AACTCCTTGGAATTTTTTGC+AGG + tig0020883:80696-80715 None:intergenic 35.0%
!! GATTAGTTTCATTTGGTGCA+TGG + tig0020883:80735-80754 None:intergenic 35.0%
!! TTGATGAACTCCTTGGTTTT+TGG + tig0020883:80806-80825 None:intergenic 35.0%
AAGTGATTTGATGAACTCCT+TGG + tig0020883:80813-80832 None:intergenic 35.0%
CAAATCACTTCCCTATACAA+AGG - tig0020883:80823-80842 Msa1387300:CDS 35.0%
AATCACTTCCCTATACAAAG+GGG - tig0020883:80825-80844 Msa1387300:CDS 35.0%
TGTAACAAATCAATGGCCAA+TGG + tig0020883:80884-80903 None:intergenic 35.0%
CTACATCCTAATAGAAGCTC+TGG + tig0020883:80597-80616 None:intergenic 40.0%
CAGAGCTTCTATTAGGATGT+AGG - tig0020883:80595-80614 Msa1387300:CDS 40.0%
CTTCCCTGCAAAAAATTCCA+AGG - tig0020883:80689-80708 Msa1387300:CDS 40.0%
CAAACTCAAGATCAGACTCT+TGG + tig0020883:80775-80794 None:intergenic 40.0%
AAGTGTGTCCCCTTTGTATA+GGG + tig0020883:80836-80855 None:intergenic 40.0%
AACGGAGCACATATCGATAG+AGG + tig0020883:80631-80650 None:intergenic 45.0%
TCTATCGATATGTGCTCCGT+TGG - tig0020883:80630-80649 Msa1387300:CDS 45.0%
CTCAGCGAAAATGCATCCAA+CGG + tig0020883:80649-80668 None:intergenic 45.0%
! TGCATTTTCGCTGAGATGCT+TGG - tig0020883:80654-80673 Msa1387300:CDS 45.0%
GAAGTGTGTCCCCTTTGTAT+AGG + tig0020883:80837-80856 None:intergenic 45.0%
ATACCCACAAGCAGATCCAT+TGG - tig0020883:80865-80884 Msa1387300:CDS 45.0%
CAGAGTATGTTGTCACACGC+TGG - tig0020883:80562-80581 Msa1387300:CDS 50.0%
CGAGCTCCAGAGCTTCTATT+AGG - tig0020883:80588-80607 Msa1387300:CDS 50.0%
TGGCCAATGGATCTGCTTGT+GGG + tig0020883:80871-80890 None:intergenic 50.0%
ATGGCCAATGGATCTGCTTG+TGG + tig0020883:80872-80891 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
tig0020883 gene 80558 80922 80558 ID=Msa1387300;Name=Msa1387300
tig0020883 mRNA 80558 80922 80558 ID=Msa1387300-mRNA-1;Parent=Msa1387300;Name=Msa1387300-mRNA-1;_AED=0.39;_eAED=0.41;_QI=0|0|0|1|0|0|2|0|117
tig0020883 exon 80768 80922 80768 ID=Msa1387300-mRNA-1:exon:10561;Parent=Msa1387300-mRNA-1
tig0020883 exon 80558 80756 80558 ID=Msa1387300-mRNA-1:exon:10560;Parent=Msa1387300-mRNA-1
tig0020883 CDS 80768 80922 80768 ID=Msa1387300-mRNA-1:cds;Parent=Msa1387300-mRNA-1
tig0020883 CDS 80558 80756 80558 ID=Msa1387300-mRNA-1:cds;Parent=Msa1387300-mRNA-1
Gene Sequence

>Msa1387300

ATGACAGAGTATGTTGTCACACGCTGGTATCGAGCTCCAGAGCTTCTATTAGGATGTAGGAATTACGGAACCTCTATCGATATGTGCTCCGTTGGATGCATTTTCGCTGAGATGCTTGGTAGAAAGCAAATCTTCCCTGCAAAAAATTCCAAGGAAAAAAATTCCATGCACCAAATGAAACTAATCATAAGTGTTCTTGGAAGCCAAGAGTCTGATCTTGAGTTTGTAGTTAATCCAAAAACCAAGGAGTTCATCAAATCACTTCCCTATACAAAGGGGACACACTTCTCTAAGCTATACCCACAAGCAGATCCATTGGCCATTGATTTGTTACAAAAAAATGCTTGTGTTTGA
Protein sequence

>Msa1387300

MTEYVVTRWYRAPELLLGCRNYGTSIDMCSVGCIFAEMLGRKQIFPAKNSKEKNSMHQMKLIISVLGSQESDLEFVVNPKTKEFIKSLPYTKGTHFSKLYPQADPLAIDLLQKNACV*