Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387770 | XP_003602576.2 | 58.407 | 113 | 37 | 2 | 3 | 105 | 8 | 120 | 5.91e-29 | 129 |
| Msa1387770 | XP_003602576.2 | 95.078 | 386 | 13 | 2 | 114 | 494 | 6 | 390 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387770 | sp|B9RU15|ATXR5_RICCO | 62.599 | 377 | 136 | 3 | 119 | 494 | 2 | 374 | 1.32e-166 | 478 |
| Msa1387770 | sp|B9RU15|ATXR5_RICCO | 70.149 | 67 | 20 | 0 | 42 | 108 | 43 | 109 | 3.49e-27 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387770 | G7JBG7 | 58.407 | 113 | 37 | 2 | 3 | 105 | 8 | 120 | 2.82e-29 | 129 |
| Msa1387770 | G7JBG7 | 95.078 | 386 | 13 | 2 | 114 | 494 | 6 | 390 | 0.0 | 754 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1387770 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387770 | MtrunA17_Chr3g0129881 | 95.078 | 386 | 13 | 2 | 114 | 494 | 6 | 390 | 0.0 | 754 |
| Msa1387770 | MtrunA17_Chr3g0129881 | 58.407 | 113 | 37 | 2 | 3 | 105 | 8 | 120 | 5.44e-33 | 129 |
| Msa1387770 | MtrunA17_Chr1g0146731 | 60.625 | 320 | 122 | 2 | 176 | 494 | 26 | 342 | 9.43e-136 | 395 |
| Msa1387770 | MtrunA17_Chr1g0146731 | 45.312 | 64 | 35 | 0 | 42 | 105 | 10 | 73 | 6.86e-14 | 72.8 |
| Msa1387770 | MtrunA17_Chr1g0146761 | 52.174 | 322 | 117 | 4 | 176 | 494 | 73 | 360 | 1.41e-111 | 334 |
| Msa1387770 | MtrunA17_Chr3g0129871 | 93.421 | 76 | 5 | 0 | 39 | 114 | 1 | 76 | 1.77e-46 | 156 |
| Msa1387770 | MtrunA17_Chr3g0129871 | 78.689 | 61 | 13 | 0 | 163 | 223 | 7 | 67 | 1.73e-30 | 113 |
| Msa1387770 | MtrunA17_Chr1g0146751 | 55.469 | 128 | 57 | 0 | 337 | 464 | 69 | 196 | 1.30e-42 | 150 |
| Msa1387770 | MtrunA17_Chr1g0146741 | 49.367 | 158 | 55 | 2 | 272 | 414 | 30 | 177 | 8.43e-37 | 134 |
| Msa1387770 | MtrunA17_Chr8g0357751 | 55.340 | 103 | 45 | 1 | 337 | 438 | 14 | 116 | 9.18e-32 | 119 |
| Msa1387770 | MtrunA17_Chr5g0397501 | 49.091 | 55 | 28 | 0 | 53 | 107 | 237 | 291 | 9.29e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387770 | AT5G09790.2 | 65.109 | 321 | 109 | 2 | 174 | 494 | 62 | 379 | 8.33e-155 | 446 |
| Msa1387770 | AT5G09790.2 | 52.083 | 96 | 36 | 3 | 17 | 105 | 19 | 111 | 2.52e-21 | 96.3 |
| Msa1387770 | AT5G09790.1 | 64.798 | 321 | 109 | 2 | 174 | 494 | 62 | 378 | 1.56e-153 | 442 |
| Msa1387770 | AT5G09790.1 | 52.083 | 96 | 36 | 3 | 17 | 105 | 19 | 111 | 2.63e-21 | 95.9 |
| Msa1387770 | AT5G24330.1 | 60.063 | 318 | 124 | 2 | 178 | 494 | 34 | 349 | 2.08e-132 | 387 |
| Msa1387770 | AT5G24330.1 | 69.565 | 46 | 14 | 0 | 60 | 105 | 34 | 79 | 8.65e-17 | 82.0 |
Find 150 sgRNAs with CRISPR-Local
Find 479 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAGGGATTCTCTTGATTC+CGG | 0.178295 | tig0020938:+22083 | Msa1387770:CDS |
| TTTACTATAGTTTCAATCTA+AGG | 0.205084 | tig0020938:+25529 | Msa1387770:three_prime_UTR |
| CATGCCACCGTTCTCTAAAA+TGG | 0.242537 | tig0020938:-24217 | Msa1387770:intergenic |
| CTTAATAATCCTATAGAATT+AGG | 0.249310 | tig0020938:+25246 | Msa1387770:three_prime_UTR |
| TGGTGAAAGCCGGGTCTTAT+TGG | 0.291905 | tig0020938:+25115 | Msa1387770:CDS |
| CTAGAGTTCCTATTGGTTCA+TGG | 0.294500 | tig0020938:+17139 | Msa1387770:CDS |
| AAAATTGGTCCTAATTCTAT+AGG | 0.300279 | tig0020938:-25255 | Msa1387770:intergenic |
| AGAAAATTCTCCATTTCTTC+GGG | 0.303724 | tig0020938:+22057 | Msa1387770:CDS |
| AGTCTGTTGGCTTCTTCTTT+CGG | 0.305637 | tig0020938:-16924 | Msa1387770:intergenic |
| AATTACTAAGCCACATAATT+AGG | 0.308654 | tig0020938:-25405 | Msa1387770:intergenic |
| AGGCCAATTCCCTCCCTTAT+TGG | 0.310631 | tig0020938:+24430 | Msa1387770:CDS |
| AAGAAAATTCTCCATTTCTT+CGG | 0.317251 | tig0020938:+22056 | Msa1387770:CDS |
| GCAGGGATTCTCTTGATTCC+GGG | 0.340761 | tig0020938:+22084 | Msa1387770:CDS |
| AGGCTTTATTATGACTATAA+TGG | 0.341103 | tig0020938:+25167 | Msa1387770:CDS |
| ATTTGCTTCAGCCTCCTATC+AGG | 0.349536 | tig0020938:-24099 | Msa1387770:intergenic |
| TCCATTTCTTCGGGCTTCGC+AGG | 0.354232 | tig0020938:+22066 | Msa1387770:CDS |
| CCCTGCGAAGCCCGAAGAAA+TGG | 0.360117 | tig0020938:-22067 | Msa1387770:intergenic |
| GAAGTGTCTGAGACCGGTTC+TGG | 0.362102 | tig0020938:+17116 | Msa1387770:CDS |
| AATAAGCTGACGTACTTTCC+AGG | 0.362677 | tig0020938:+24168 | Msa1387770:CDS |
| GAACAATCGTGCTTCTTCTC+AGG | 0.365882 | tig0020938:+22106 | Msa1387770:CDS |
| TGAATCATAAACGACCAATA+AGG | 0.370728 | tig0020938:-24444 | Msa1387770:intergenic |
| ATAAATGTCATATCTTTGAT+TGG | 0.375561 | tig0020938:-24590 | Msa1387770:intergenic |
| ACATAATTAGGCCAGCTATA+TGG | 0.389430 | tig0020938:-25393 | Msa1387770:intergenic |
| TTCCTCTCAGGCTCTTACTA+AGG | 0.390777 | tig0020938:+24364 | Msa1387770:intron |
| CCCCAAGTGTTGTTCTGAGC+TGG | 0.393884 | tig0020938:+17167 | Msa1387770:CDS |
| TGCTACTGCTTTAACAGCAT+TGG | 0.399408 | tig0020938:+24131 | Msa1387770:CDS |
| TTCTGTACCACCAGAGGTCT+TGG | 0.407511 | tig0020938:-24036 | Msa1387770:intergenic |
| GGGCAAATCCATGAACCAAT+AGG | 0.417784 | tig0020938:-17147 | Msa1387770:intergenic |
| AGAAGAAGCACGATTGTTCC+CGG | 0.418393 | tig0020938:-22102 | Msa1387770:intergenic |
| ATCGGAACTCGAACAACAAT+TGG | 0.420274 | tig0020938:-21860 | Msa1387770:intergenic |
| GCAGATCTAGGAGCCATTCC+TGG | 0.421695 | tig0020938:-24186 | Msa1387770:intergenic |
| GGCTTCTTCTTTCGGTGGCA+CGG | 0.431024 | tig0020938:-16916 | Msa1387770:intergenic |
| TTACTATAGTTTCAATCTAA+GGG | 0.439191 | tig0020938:+25530 | Msa1387770:three_prime_UTR |
| ATGTGGGTCCGGTGAACAAC+CGG | 0.439307 | tig0020938:+21781 | Msa1387770:CDS |
| GGATCTTCTGTAGGAACAAA+TGG | 0.446011 | tig0020938:-24078 | Msa1387770:intergenic |
| CCATTTCTTCGGGCTTCGCA+GGG | 0.449592 | tig0020938:+22067 | Msa1387770:CDS |
| TAAATGTCATATCTTTGATT+GGG | 0.451435 | tig0020938:-24589 | Msa1387770:intergenic |
| GATTAAGCTTGATAGCTTGA+TGG | 0.452643 | tig0020938:-21588 | Msa1387770:intergenic |
| GAATCATAAACGACCAATAA+GGG | 0.455816 | tig0020938:-24443 | Msa1387770:intergenic |
| CTCTGGTGGTACAGAAGAAA+AGG | 0.456244 | tig0020938:+24043 | Msa1387770:CDS |
| CAGGACGATGACTAATATAA+TGG | 0.457022 | tig0020938:+16969 | Msa1387770:intron |
| GACCTTGACATCAGAACACT+TGG | 0.458131 | tig0020938:-21900 | Msa1387770:intergenic |
| ACCTCCTGTGTGAGCAATGT+GGG | 0.458530 | tig0020938:+21765 | Msa1387770:CDS |
| CTCCAGCTCAGAACAACACT+TGG | 0.460665 | tig0020938:-17169 | Msa1387770:intergenic |
| TATGTGGCTTAGTAATTATG+TGG | 0.461586 | tig0020938:+25411 | Msa1387770:three_prime_UTR |
| GGCTGAGTACACGGTGGCTG+AGG | 0.462695 | tig0020938:+21727 | Msa1387770:CDS |
| CGACCAATAAGGGAGGGAAT+TGG | 0.463530 | tig0020938:-24433 | Msa1387770:intergenic |
| CTCCTCATCCTCCACCTTCG+AGG | 0.464032 | tig0020938:+21658 | Msa1387770:CDS |
| GTTCTGGCTAGAGTTCCTAT+TGG | 0.469825 | tig0020938:+17132 | Msa1387770:CDS |
| AATTTATATGCAGGGAAGGC+AGG | 0.471087 | tig0020938:+25054 | Msa1387770:intron |
| TCACACAAAAGCAGCTCCTC+CGG | 0.474129 | tig0020938:-21800 | Msa1387770:intergenic |
| CTCCTCGAAGGTGGAGGATG+AGG | 0.474943 | tig0020938:-21660 | Msa1387770:intergenic |
| ATGTGTGAGCGATGTGGATC+TGG | 0.479905 | tig0020938:+17039 | Msa1387770:CDS |
| GGGCAAATCCACGGACCAAT+CGG | 0.479975 | tig0020938:-21878 | Msa1387770:intergenic |
| ATCCTCCACCTTCGAGGAGG+AGG | 0.480157 | tig0020938:+21664 | Msa1387770:CDS |
| TGATAGGAGGCTGAAGCAAA+TGG | 0.484670 | tig0020938:+24101 | Msa1387770:CDS |
| ATGTGTGCGGTGGGTGAAGC+TGG | 0.486566 | tig0020938:-16890 | Msa1387770:intergenic |
| GTGGCTGAGGAGGAGGATTA+CGG | 0.487091 | tig0020938:+21740 | Msa1387770:CDS |
| CTCCACCTTCGAGGAGGAGG+AGG | 0.488245 | tig0020938:+21667 | Msa1387770:CDS |
| GTCGTTTATGATTCATGCCA+AGG | 0.490606 | tig0020938:+24452 | Msa1387770:CDS |
| TTCCTACAGAAGATCCTGAT+AGG | 0.493201 | tig0020938:+24085 | Msa1387770:CDS |
| GTGAAGCTGGTTAGCTTACG+AGG | 0.497230 | tig0020938:-16877 | Msa1387770:intergenic |
| ATAGGAACTCTAGCCAGAAC+CGG | 0.497595 | tig0020938:-17129 | Msa1387770:intergenic |
| TGTGTGAGATATGATGTTAA+TGG | 0.499519 | tig0020938:+25095 | Msa1387770:CDS |
| GGCACGGTGCATGTGTGCGG+TGG | 0.500375 | tig0020938:-16900 | Msa1387770:intergenic |
| GCACGGTGCATGTGTGCGGT+GGG | 0.502206 | tig0020938:-16899 | Msa1387770:intergenic |
| ATGGATCGATTAGCAGATCT+AGG | 0.502517 | tig0020938:-24198 | Msa1387770:intergenic |
| TCACACAACAAAAGCTCCTC+AGG | 0.503103 | tig0020938:-17069 | Msa1387770:intergenic |
| CTGTGTGAGCAATGTGGGTC+CGG | 0.504059 | tig0020938:+21770 | Msa1387770:CDS |
| CTCAGACAAAATGATGAGTT+GGG | 0.506277 | tig0020938:-25205 | Msa1387770:intergenic |
| CAGCTCCTCCGGTTGTTCAC+CGG | 0.511216 | tig0020938:-21789 | Msa1387770:intergenic |
| GCTCAGACAAAATGATGAGT+TGG | 0.512353 | tig0020938:-25206 | Msa1387770:intergenic |
| TCGGAGACGTCCAAGACCTC+TGG | 0.514165 | tig0020938:+24026 | Msa1387770:CDS |
| TGAGTACACGGTGGCTGAGG+AGG | 0.515374 | tig0020938:+21730 | Msa1387770:CDS |
| CTCCTCCTCCTCGAAGGTGG+AGG | 0.519312 | tig0020938:-21666 | Msa1387770:intergenic |
| CCCCAAGTGTTCTGATGTCA+AGG | 0.520959 | tig0020938:+21898 | Msa1387770:CDS |
| CTGTTGGCTTCTTCTTTCGG+TGG | 0.523013 | tig0020938:-16921 | Msa1387770:intergenic |
| TCATATGAAGTGTCTGAGAC+CGG | 0.525057 | tig0020938:+17110 | Msa1387770:CDS |
| ATGATGTTAATGGTGAAAGC+CGG | 0.525411 | tig0020938:+25105 | Msa1387770:CDS |
| AGAGATGAATAGAGAACCCT+AGG | 0.528708 | tig0020938:+25437 | Msa1387770:three_prime_UTR |
| ATTTCTTAAAGTGTTACTGT+GGG | 0.531797 | tig0020938:+25351 | Msa1387770:three_prime_UTR |
| TTTAGAGAACGGTGGCATGC+AGG | 0.534531 | tig0020938:+24221 | Msa1387770:CDS |
| ACCTTGACATCAGAACACTT+GGG | 0.540926 | tig0020938:-21899 | Msa1387770:intergenic |
| GCCAACAGACTCGTCATCGC+GGG | 0.543998 | tig0020938:+16936 | Msa1387770:CDS |
| TCCAGCTCAGAACAACACTT+GGG | 0.544872 | tig0020938:-17168 | Msa1387770:intergenic |
| AACAATCGTGCTTCTTCTCA+GGG | 0.545517 | tig0020938:+22107 | Msa1387770:CDS |
| TGATGTTAATGGTGAAAGCC+GGG | 0.546415 | tig0020938:+25106 | Msa1387770:CDS |
| TTCGAGTTCCGATTGGTCCG+TGG | 0.546720 | tig0020938:+21870 | Msa1387770:CDS |
| GTACACGGTGGCTGAGGAGG+AGG | 0.549057 | tig0020938:+21733 | Msa1387770:CDS |
| ACATTTATTGCTGAATACAC+TGG | 0.549884 | tig0020938:+24605 | Msa1387770:CDS |
| AATTTCTTAAAGTGTTACTG+TGG | 0.552157 | tig0020938:+25350 | Msa1387770:three_prime_UTR |
| ATATAGCTGGCCTAATTATG+TGG | 0.555465 | tig0020938:+25395 | Msa1387770:three_prime_UTR |
| ATTGTTGTTCGAGTTCCGAT+TGG | 0.560719 | tig0020938:+21863 | Msa1387770:CDS |
| ATATGCAGTGGTTGAGAAGG+AGG | 0.563550 | tig0020938:+17002 | Msa1387770:CDS |
| CCCCTCCTCCTCCTCGAAGG+TGG | 0.568245 | tig0020938:-21669 | Msa1387770:intergenic |
| ATGCTGTTAAAGCAGTAGCA+AGG | 0.571401 | tig0020938:-24128 | Msa1387770:intergenic |
| TAAATATGCAGTGGTTGAGA+AGG | 0.574113 | tig0020938:+16999 | Msa1387770:CDS |
| TGCTGTTAAAGCAGTAGCAA+GGG | 0.574924 | tig0020938:-24127 | Msa1387770:intergenic |
| ATCATGAAAATTCTTTCCCG+AGG | 0.577272 | tig0020938:-25283 | Msa1387770:intergenic |
| CCACCTTCGAGGAGGAGGAG+GGG | 0.583605 | tig0020938:+21669 | Msa1387770:CDS |
| TCCACCTTCGAGGAGGAGGA+GGG | 0.584045 | tig0020938:+21668 | Msa1387770:CDS |
| CTTTAGATGCTATGAAGCGT+CGG | 0.589068 | tig0020938:+24007 | Msa1387770:intron |
| ATTCCCCTCCTCCTCCTCGA+AGG | 0.589669 | tig0020938:-21672 | Msa1387770:intergenic |
| CTTGATAGCTTGATGGAAGA+CGG | 0.590190 | tig0020938:-21581 | Msa1387770:intergenic |
| TCGTTTATGATTCATGCCAA+GGG | 0.591563 | tig0020938:+24453 | Msa1387770:CDS |
| GCTGACGTACTTTCCAGGAA+TGG | 0.592256 | tig0020938:+24173 | Msa1387770:CDS |
| CTCCTATCAGGATCTTCTGT+AGG | 0.592606 | tig0020938:-24087 | Msa1387770:intergenic |
| GAACACTTGGGGCAAATCCA+CGG | 0.593747 | tig0020938:-21887 | Msa1387770:intergenic |
| CTCGAAGGTGGAGGATGAGG+AGG | 0.595688 | tig0020938:-21657 | Msa1387770:intergenic |
| GAAGACGGCGATGGAGACGC+CGG | 0.596034 | tig0020938:-21566 | Msa1387770:intergenic |
| CCTTGACATCAGAACACTTG+GGG | 0.598005 | tig0020938:-21898 | Msa1387770:intergenic |
| ATATAAGAGGGCTGAGTACA+CGG | 0.598652 | tig0020938:+21718 | Msa1387770:intron |
| AACATTGCTCGCTTCATCAG+TGG | 0.600548 | tig0020938:+24740 | Msa1387770:CDS |
| AGCTTGATGGAAGACGGCGA+TGG | 0.603823 | tig0020938:-21575 | Msa1387770:intergenic |
| TCATGAAAATTCTTTCCCGA+GGG | 0.609236 | tig0020938:-25282 | Msa1387770:intergenic |
| ACCCGCGATGACGAGTCTGT+TGG | 0.610544 | tig0020938:-16937 | Msa1387770:intergenic |
| TTGTGTGACAAATGTGACAA+TGG | 0.614662 | tig0020938:+21815 | Msa1387770:CDS |
| TGTGAGGTGCATGGGTGCGG+CGG | 0.615402 | tig0020938:-21610 | Msa1387770:intergenic |
| GCTACTCGAGATATTTCCAA+GGG | 0.615468 | tig0020938:+25140 | Msa1387770:CDS |
| TGCTACTCGAGATATTTCCA+AGG | 0.618331 | tig0020938:+25139 | Msa1387770:CDS |
| TTGTGTGACAAATGCGACAA+AGG | 0.628248 | tig0020938:+17084 | Msa1387770:CDS |
| CTCATCCTCCACCTTCGAGG+AGG | 0.628581 | tig0020938:+21661 | Msa1387770:CDS |
| CGGACCCACATTGCTCACAC+AGG | 0.629732 | tig0020938:-21769 | Msa1387770:intergenic |
| CGATGACTAATATAATGGCG+AGG | 0.630890 | tig0020938:+16974 | Msa1387770:CDS |
| CATAAACGACCAATAAGGGA+GGG | 0.633637 | tig0020938:-24439 | Msa1387770:intergenic |
| CTACAGAAGATCCTGATAGG+AGG | 0.635132 | tig0020938:+24088 | Msa1387770:CDS |
| GATGACTAATATAATGGCGA+GGG | 0.645664 | tig0020938:+16975 | Msa1387770:CDS |
| TCATAAACGACCAATAAGGG+AGG | 0.648173 | tig0020938:-24440 | Msa1387770:intergenic |
| AGCCAACAGACTCGTCATCG+CGG | 0.654231 | tig0020938:+16935 | Msa1387770:CDS |
| TGAAGCTGGTTAGCTTACGA+GGG | 0.655445 | tig0020938:-16876 | Msa1387770:intergenic |
| ACCCACATTGCTCACACAGG+AGG | 0.655882 | tig0020938:-21766 | Msa1387770:intergenic |
| GAGTAGCAACCAATAAGACC+CGG | 0.658883 | tig0020938:-25124 | Msa1387770:intergenic |
| GGCGAGGGCTAAATATGCAG+TGG | 0.659115 | tig0020938:+16990 | Msa1387770:CDS |
| GACCTCCTGTGTGAGCAATG+TGG | 0.660393 | tig0020938:+21764 | Msa1387770:CDS |
| GGTGGCACGGTGCATGTGTG+CGG | 0.663881 | tig0020938:-16903 | Msa1387770:intergenic |
| CCAGCTCAGAACAACACTTG+GGG | 0.668343 | tig0020938:-17167 | Msa1387770:intergenic |
| TGGTACAGAAGAAAAGGAGA+AGG | 0.674031 | tig0020938:+24049 | Msa1387770:CDS |
| GAGACGTCCAAGACCTCTGG+TGG | 0.674893 | tig0020938:+24029 | Msa1387770:CDS |
| TGGGTCCGGTGAACAACCGG+AGG | 0.676363 | tig0020938:+21784 | Msa1387770:CDS |
| GCAATGTAGCTATACTGTGG+AGG | 0.683236 | tig0020938:+24559 | Msa1387770:intron |
| GACTGCATGTGTGAGCGATG+TGG | 0.685024 | tig0020938:+17033 | Msa1387770:CDS |
| GAAGCTGGTTAGCTTACGAG+GGG | 0.692874 | tig0020938:-16875 | Msa1387770:intergenic |
| TGGATCTGGTGAACAACCTG+AGG | 0.697540 | tig0020938:+17053 | Msa1387770:CDS |
| TACTCGAGATATTTCCAAGG+GGG | 0.699750 | tig0020938:+25142 | Msa1387770:CDS |
| GTTATCTGTGCTGATAAACG+TGG | 0.699829 | tig0020938:+24716 | Msa1387770:CDS |
| TGCATAGCTATGACTAAACG+AGG | 0.704634 | tig0020938:+24410 | Msa1387770:CDS |
| CTACTCGAGATATTTCCAAG+GGG | 0.743213 | tig0020938:+25141 | Msa1387770:CDS |
| TATGCAATGTAGCTATACTG+TGG | 0.744881 | tig0020938:+24556 | Msa1387770:intron |
| AAGCTGGTTAGCTTACGAGG+GGG | 0.759841 | tig0020938:-16874 | Msa1387770:intergenic |
| TAAGAGGGCTGAGTACACGG+TGG | 0.812154 | tig0020938:+21721 | Msa1387770:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAAAAAAAAATTTT+TGG | - | tig0020938:21100-21119 | Msa1387770:intergenic | 0.0% |
| !!! | TAAAAAAAATATTTTTTTAT+TGG | + | tig0020938:22166-22185 | Msa1387770:intron | 0.0% |
| !! | GTAATACATATATTATTTAA+TGG | + | tig0020938:18147-18166 | Msa1387770:intron | 10.0% |
| !! | AATTATTTACATAAAATACA+TGG | - | tig0020938:18584-18603 | Msa1387770:intergenic | 10.0% |
| !!! | ATTTTATGTAAATAATTGTT+CGG | + | tig0020938:18587-18606 | Msa1387770:intron | 10.0% |
| !!! | TATTTTCTTCTATATATTAA+AGG | + | tig0020938:20190-20209 | Msa1387770:intron | 10.0% |
| !! | AACTTATATGATATTATAAA+TGG | + | tig0020938:20396-20415 | Msa1387770:intron | 10.0% |
| !! | AAACAATTTATAATTTATGA+CGG | - | tig0020938:20608-20627 | Msa1387770:intergenic | 10.0% |
| !!! | TTTTGAATAAGATTTTTTTT+TGG | - | tig0020938:20976-20995 | Msa1387770:intergenic | 10.0% |
| !!! | ATCTTTAGAAAATATTTAAT+TGG | + | tig0020938:23762-23781 | Msa1387770:intron | 10.0% |
| !! | TATTAGCTATCAATATAATA+TGG | + | tig0020938:17269-17288 | Msa1387770:intron | 15.0% |
| !! | ATTGAAATAGTTATTTGAAA+AGG | + | tig0020938:17763-17782 | Msa1387770:intron | 15.0% |
| !! | TTGAAATAGTTATTTGAAAA+GGG | + | tig0020938:17764-17783 | Msa1387770:intron | 15.0% |
| !!! | ATCAATTTGTTTTGAAATTA+TGG | + | tig0020938:18083-18102 | Msa1387770:intron | 15.0% |
| !! | GTGTTTATATAATATGAAAT+CGG | - | tig0020938:19585-19604 | Msa1387770:intergenic | 15.0% |
| !! | TATAGACAAGAAATAAAAAT+TGG | - | tig0020938:19634-19653 | Msa1387770:intergenic | 15.0% |
| !! | GTTTATTAGAAATTGAAAAA+CGG | + | tig0020938:19855-19874 | Msa1387770:intron | 15.0% |
| !! | TTAATAATCATCTAAAAAAG+AGG | + | tig0020938:20012-20031 | Msa1387770:intron | 15.0% |
| !!! | CATTTATAATGTTTTCAAAT+TGG | + | tig0020938:20160-20179 | Msa1387770:intron | 15.0% |
| !! | TAATATATAGAAGAAAATAG+TGG | - | tig0020938:20189-20208 | Msa1387770:intergenic | 15.0% |
| !!! | AACATAATATATTTTTTGAG+AGG | + | tig0020938:20269-20288 | Msa1387770:intron | 15.0% |
| !!! | TTTTTAAAAGTGAATAAATC+AGG | - | tig0020938:20496-20515 | Msa1387770:intergenic | 15.0% |
| !!! | TGATTTATTCACTTTTAAAA+AGG | + | tig0020938:20495-20514 | Msa1387770:intron | 15.0% |
| !! | TAATTCTTGTAATGATTATT+TGG | + | tig0020938:22459-22478 | Msa1387770:intron | 15.0% |
| !! | ATATATACATGATATCTAAT+TGG | + | tig0020938:23951-23970 | Msa1387770:intron | 15.0% |
| !! | CATGTTAATCTTAAATTAAA+AGG | + | tig0020938:24802-24821 | Msa1387770:intron | 15.0% |
| !!! | TTTAAAGAACTAAAATTTTG+AGG | + | tig0020938:24947-24966 | Msa1387770:intron | 15.0% |
| !! | AAAAAAAAACTAAATGAAGA+AGG | - | tig0020938:25467-25486 | Msa1387770:intergenic | 15.0% |
| !! | AGTAAGTGATCAATATAATA+TGG | + | tig0020938:17201-17220 | Msa1387770:intron | 20.0% |
| !! | TATTTATGCATAAATGTCAA+TGG | + | tig0020938:17494-17513 | Msa1387770:intron | 20.0% |
| !! | ATTTATGCATAAATGTCAAT+GGG | + | tig0020938:17495-17514 | Msa1387770:intron | 20.0% |
| !!! | CTTAATAATTGATTCACTAA+CGG | - | tig0020938:17618-17637 | Msa1387770:intergenic | 20.0% |
| !! | AACATTAAAAATTGAGAAAC+AGG | + | tig0020938:17709-17728 | Msa1387770:intron | 20.0% |
| !! | TGTTTATCTTGAAAAACATA+TGG | + | tig0020938:17938-17957 | Msa1387770:intron | 20.0% |
| !! | AATTTAATGTGATTCATTGT+CGG | + | tig0020938:18109-18128 | Msa1387770:intron | 20.0% |
| !! | GCAATACATATATTATTCAT+TGG | + | tig0020938:18523-18542 | Msa1387770:intron | 20.0% |
| !!! | ATTTATTGTTCTTTGGAAAT+TGG | + | tig0020938:18819-18838 | Msa1387770:intron | 20.0% |
| !!! | TTAAGATAGTTTTTTGAAAG+TGG | + | tig0020938:19149-19168 | Msa1387770:intron | 20.0% |
| !!! | TATCAAGTTGTTTGTAAATT+AGG | + | tig0020938:19437-19456 | Msa1387770:intron | 20.0% |
| !! | CATTGAATAATTAACGTATA+TGG | - | tig0020938:19694-19713 | Msa1387770:intergenic | 20.0% |
| !! | GTATTAAAAAAAAGCTTGAA+TGG | - | tig0020938:19828-19847 | Msa1387770:intergenic | 20.0% |
| !!! | TATTAAAGGAAATACCTTTT+AGG | + | tig0020938:20204-20223 | Msa1387770:intron | 20.0% |
| !!! | TTTAGAATTTTGATCCTAAA+AGG | - | tig0020938:20221-20240 | Msa1387770:intergenic | 20.0% |
| !! | TTTGAATCACATTAATTGTT+TGG | - | tig0020938:21039-21058 | Msa1387770:intergenic | 20.0% |
| !! | TGAATGAACCAAAAAAAAAA+TGG | - | tig0020938:21151-21170 | Msa1387770:intergenic | 20.0% |
| !!! | TTTTTTTTTTGGTTCATTCA+TGG | + | tig0020938:21151-21170 | Msa1387770:intron | 20.0% |
| !! | GTAAACAAAAAAAACATCAA+AGG | + | tig0020938:21325-21344 | Msa1387770:intron | 20.0% |
| !!! | AATTTGTGTTAACTCTAAAA+TGG | - | tig0020938:21431-21450 | Msa1387770:intergenic | 20.0% |
| !!! | GCTTGTTAATATATATAAGA+GGG | + | tig0020938:21706-21725 | Msa1387770:intron | 20.0% |
| !!! | TCGTGGATTATAAATATTTT+TGG | + | tig0020938:22371-22390 | Msa1387770:intron | 20.0% |
| !!! | TTTAAATTTTTGTGTGAACA+TGG | + | tig0020938:22488-22507 | Msa1387770:intron | 20.0% |
| !!! | TTAAATTTTTGTGTGAACAT+GGG | + | tig0020938:22489-22508 | Msa1387770:intron | 20.0% |
| !!! | TTGATTTGTTGTAGTTATTT+TGG | + | tig0020938:22626-22645 | Msa1387770:intron | 20.0% |
| !! | ATCTAGTTAGATTAAGAATA+TGG | - | tig0020938:23084-23103 | Msa1387770:intergenic | 20.0% |
| !! | AGTATAATTTGACATTAATG+TGG | + | tig0020938:23444-23463 | Msa1387770:intron | 20.0% |
| !!! | CAAAAGAACTAGAAATTTTT+TGG | + | tig0020938:23557-23576 | Msa1387770:intron | 20.0% |
| !! | AAAAGTTGTAGGAAAAAAAA+AGG | - | tig0020938:23818-23837 | Msa1387770:intergenic | 20.0% |
| !! | TCAAAACATAAAAAAGTTGT+AGG | - | tig0020938:23829-23848 | Msa1387770:intergenic | 20.0% |
| !!! | TATGTTATCTTAACTTTTCT+TGG | + | tig0020938:24522-24541 | Msa1387770:intron | 20.0% |
| !! | TAAATGTCATATCTTTGATT+GGG | - | tig0020938:24592-24611 | Msa1387770:intergenic | 20.0% |
| !! | ATAAATGTCATATCTTTGAT+TGG | - | tig0020938:24593-24612 | Msa1387770:intergenic | 20.0% |
| !! | AATAAGAATGTCAAAATGAA+TGG | - | tig0020938:24873-24892 | Msa1387770:intergenic | 20.0% |
| !! | AAGCTAAACAACATATAAAA+TGG | - | tig0020938:24917-24936 | Msa1387770:intergenic | 20.0% |
| !!! | TTTTATATGTTGTTTAGCTT+TGG | + | tig0020938:24917-24936 | Msa1387770:intron | 20.0% |
| !! | CTTAATAATCCTATAGAATT+AGG | + | tig0020938:25246-25265 | Msa1387770:three_prime_UTR | 20.0% |
| !! | TTTACTATAGTTTCAATCTA+AGG | + | tig0020938:25529-25548 | Msa1387770:three_prime_UTR | 20.0% |
| !! | TTACTATAGTTTCAATCTAA+GGG | + | tig0020938:25530-25549 | Msa1387770:three_prime_UTR | 20.0% |
| ! | ATGGTGTGAAAATAAAAAGA+CGG | + | tig0020938:17220-17239 | Msa1387770:intron | 25.0% |
| !!! | AGCTAATATTTTAGCAAAGA+CGG | - | tig0020938:17257-17276 | Msa1387770:intergenic | 25.0% |
| ! | ATGGTGTGTAAATAAAAAGA+CGG | + | tig0020938:17288-17307 | Msa1387770:intron | 25.0% |
| !!! | AATTACTTTTTCAGCAAAGA+CGG | - | tig0020938:17325-17344 | Msa1387770:intergenic | 25.0% |
| ! | TACTTAAACATACATGCATA+GGG | - | tig0020938:17434-17453 | Msa1387770:intergenic | 25.0% |
| !!! | TTTTATTTTCATTATTGGCC+TGG | - | tig0020938:17468-17487 | Msa1387770:intergenic | 25.0% |
| !! | TCAAGTTTATTGATTGACAT+TGG | + | tig0020938:17525-17544 | Msa1387770:intron | 25.0% |
| ! | AACTATCTGTATAACATACA+TGG | - | tig0020938:17658-17677 | Msa1387770:intergenic | 25.0% |
| ! | AAATAGTTATTTGAAAAGGG+TGG | + | tig0020938:17767-17786 | Msa1387770:intron | 25.0% |
| ! | TTATCTTGAAAAACATATGG+TGG | + | tig0020938:17941-17960 | Msa1387770:intron | 25.0% |
| ! | TTCATTGGAAATTGAGAAAA+TGG | + | tig0020938:18029-18048 | Msa1387770:intron | 25.0% |
| ! | AACTATATCATTAGCATATG+TGG | - | tig0020938:18440-18459 | Msa1387770:intergenic | 25.0% |
| ! | ATGCTAATGATATAGTTGTT+AGG | + | tig0020938:18443-18462 | Msa1387770:intron | 25.0% |
| ! | AATGATATAGTTGTTAGGAA+AGG | + | tig0020938:18448-18467 | Msa1387770:intron | 25.0% |
| ! | ATGATATAGTTGTTAGGAAA+GGG | + | tig0020938:18449-18468 | Msa1387770:intron | 25.0% |
| ! | ATGTAAATAATTGTTCGGAA+AGG | + | tig0020938:18592-18611 | Msa1387770:intron | 25.0% |
| ! | TGTAAATAATTGTTCGGAAA+GGG | + | tig0020938:18593-18612 | Msa1387770:intron | 25.0% |
| ! | GCAATACATTTATTGTTCTT+TGG | + | tig0020938:18812-18831 | Msa1387770:intron | 25.0% |
| ! | CATTAAATCCATAAATTGTG+TGG | - | tig0020938:18910-18929 | Msa1387770:intergenic | 25.0% |
| ! | ACATGACAAGACAAATAATT+AGG | - | tig0020938:19005-19024 | Msa1387770:intergenic | 25.0% |
| ! | ACTAAAAATTGAGAAACAAG+CGG | + | tig0020938:19097-19116 | Msa1387770:intron | 25.0% |
| ! | AACTATCTTAATAGCATACA+TGG | - | tig0020938:19140-19159 | Msa1387770:intergenic | 25.0% |
| ! | GCAATACATATATTATTCGT+TGG | + | tig0020938:19224-19243 | Msa1387770:intron | 25.0% |
| ! | ATTCTATTGAGACAATTGTT+TGG | + | tig0020938:19288-19307 | Msa1387770:intron | 25.0% |
| !!! | CTTGTCTATATCTTTTTTGA+AGG | + | tig0020938:19644-19663 | Msa1387770:intron | 25.0% |
| !!! | ACTTAAATGTAACTTGTTGT+TGG | + | tig0020938:19802-19821 | Msa1387770:intron | 25.0% |
| !!! | ACCTCTCTGTTTTATTTTTT+GGG | - | tig0020938:19885-19904 | Msa1387770:intergenic | 25.0% |
| ! | TCTACTATATTGTCAAACAA+AGG | + | tig0020938:20245-20264 | Msa1387770:intron | 25.0% |
| !! | CAACAATTGAATTTTATGCA+CGG | - | tig0020938:20334-20353 | Msa1387770:intergenic | 25.0% |
| ! | ATTCAATTGTTGATATGACA+CGG | + | tig0020938:20342-20361 | Msa1387770:intron | 25.0% |
| !! | CTTGTGGATTTAACTTAATT+AGG | + | tig0020938:20429-20448 | Msa1387770:intron | 25.0% |
| ! | TAAAAGTCTGTGTAAAAAAC+CGG | + | tig0020938:21210-21229 | Msa1387770:intron | 25.0% |
| !! | CGCTTGTTAATATATATAAG+AGG | + | tig0020938:21705-21724 | Msa1387770:intron | 25.0% |
| ! | TGTGATTGTGATTATTAATG+TGG | + | tig0020938:21989-22008 | Msa1387770:intron | 25.0% |
| ! | AAGAAAATTCTCCATTTCTT+CGG | + | tig0020938:22056-22075 | Msa1387770:CDS | 25.0% |
| ! | CAATGTTTGGATATTTGATT+TGG | + | tig0020938:22239-22258 | Msa1387770:intron | 25.0% |
| !! | TAAATTTTTGTGTGAACATG+GGG | + | tig0020938:22490-22509 | Msa1387770:intron | 25.0% |
| !! | TGTTTCTTTAGAAATTGTGT+TGG | + | tig0020938:22556-22575 | Msa1387770:intron | 25.0% |
| ! | CAAATCAAGCTTAAAATTTG+TGG | - | tig0020938:22614-22633 | Msa1387770:intergenic | 25.0% |
| ! | AACATTACTATCGCAAAAAT+AGG | - | tig0020938:22802-22821 | Msa1387770:intergenic | 25.0% |
| ! | TTCAAATCAAACAACAGAAT+AGG | - | tig0020938:22969-22988 | Msa1387770:intergenic | 25.0% |
| !!! | TATTCTGTTGTTTGATTTGA+AGG | + | tig0020938:22968-22987 | Msa1387770:intron | 25.0% |
| !!! | AGATTGTTTCTGAAAATTTG+TGG | + | tig0020938:23100-23119 | Msa1387770:intron | 25.0% |
| !!! | GATTGTTTCTGAAAATTTGT+GGG | + | tig0020938:23101-23120 | Msa1387770:intron | 25.0% |
| !!! | ATTGTTTCTGAAAATTTGTG+GGG | + | tig0020938:23102-23121 | Msa1387770:intron | 25.0% |
| ! | ATTTCGTACAAAGTCATTTA+GGG | - | tig0020938:23156-23175 | Msa1387770:intergenic | 25.0% |
| ! | TATTTCGTACAAAGTCATTT+AGG | - | tig0020938:23157-23176 | Msa1387770:intergenic | 25.0% |
| ! | AAAAGACTAAGTGATTAAGT+TGG | + | tig0020938:23350-23369 | Msa1387770:intron | 25.0% |
| !!! | TAGAAATTTTTTGGCTTACT+AGG | + | tig0020938:23566-23585 | Msa1387770:intron | 25.0% |
| ! | TGAAGGAACAAATATCAAAA+GGG | - | tig0020938:23653-23672 | Msa1387770:intergenic | 25.0% |
| ! | ATGAAGGAACAAATATCAAA+AGG | - | tig0020938:23654-23673 | Msa1387770:intergenic | 25.0% |
| ! | TCTTCTTAATTTATCCATTC+TGG | + | tig0020938:23983-24002 | Msa1387770:intron | 25.0% |
| ! | AACAATGATTTCCAACTTTA+TGG | - | tig0020938:24502-24521 | Msa1387770:intergenic | 25.0% |
| ! | AATTAAAAGGATAGAACACT+AGG | + | tig0020938:24815-24834 | Msa1387770:intron | 25.0% |
| ! | ATTAAAAGGATAGAACACTA+GGG | + | tig0020938:24816-24835 | Msa1387770:intron | 25.0% |
| ! | ATATCATTGCACAAAAGAAA+AGG | - | tig0020938:24998-25017 | Msa1387770:intergenic | 25.0% |
| !!! | CAATGATATTGCTATTTCTT+CGG | + | tig0020938:25009-25028 | Msa1387770:intron | 25.0% |
| !!! | AGGCTTTATTATGACTATAA+TGG | + | tig0020938:25167-25186 | Msa1387770:CDS | 25.0% |
| ! | AAAATTGGTCCTAATTCTAT+AGG | - | tig0020938:25258-25277 | Msa1387770:intergenic | 25.0% |
| !! | AATTTCTTAAAGTGTTACTG+TGG | + | tig0020938:25350-25369 | Msa1387770:three_prime_UTR | 25.0% |
| !! | ATTTCTTAAAGTGTTACTGT+GGG | + | tig0020938:25351-25370 | Msa1387770:three_prime_UTR | 25.0% |
| ! | AATTACTAAGCCACATAATT+AGG | - | tig0020938:25408-25427 | Msa1387770:intergenic | 25.0% |
| GTACTTAAACATACATGCAT+AGG | - | tig0020938:17435-17454 | Msa1387770:intergenic | 30.0% | |
| ATGTATGTTTAAGTACGTGT+CGG | + | tig0020938:17439-17458 | Msa1387770:intron | 30.0% | |
| ! | TTTTGATGTGATTCAGAGTT+TGG | + | tig0020938:17976-17995 | Msa1387770:intron | 30.0% |
| ATTGGAAATTGAGAAAATGG+TGG | + | tig0020938:18032-18051 | Msa1387770:intron | 30.0% | |
| GAAACTACAGAGAGAAAATA+CGG | - | tig0020938:18208-18227 | Msa1387770:intergenic | 30.0% | |
| GAATATGCTAGAAAATAACG+AGG | + | tig0020938:18255-18274 | Msa1387770:intron | 30.0% | |
| ACCTTCATTTGTTTGAATCA+AGG | + | tig0020938:18291-18310 | Msa1387770:intron | 30.0% | |
| CCTTCATTTGTTTGAATCAA+GGG | + | tig0020938:18292-18311 | Msa1387770:intron | 30.0% | |
| TTAACTACGAATCACACTAA+AGG | - | tig0020938:18489-18508 | Msa1387770:intergenic | 30.0% | |
| ! | ATGTATTGCAAAAGTGTGAA+TGG | - | tig0020938:18512-18531 | Msa1387770:intergenic | 30.0% |
| ATTGAAAGTTGAAAAGCAAG+TGG | + | tig0020938:18686-18705 | Msa1387770:intron | 30.0% | |
| AACTATCTCATTAGCATATG+TGG | - | tig0020938:18728-18747 | Msa1387770:intergenic | 30.0% | |
| ATGAGATAGTTGTTCAGAAA+TGG | + | tig0020938:18737-18756 | Msa1387770:intron | 30.0% | |
| AGAAATGGTGGCATAATTTA+TGG | + | tig0020938:18752-18771 | Msa1387770:intron | 30.0% | |
| ! | TTCTTTGGAAATTGGAAAAC+AGG | + | tig0020938:18827-18846 | Msa1387770:intron | 30.0% |
| AAAATGTGCCACACAATTTA+TGG | + | tig0020938:18899-18918 | Msa1387770:intron | 30.0% | |
| ! | GGTCATTCAAGATTTTTGAA+AGG | + | tig0020938:19062-19081 | Msa1387770:intron | 30.0% |
| GCATACATGGTAAGATAAAT+AGG | - | tig0020938:19127-19146 | Msa1387770:intergenic | 30.0% | |
| !!! | AGATAGTTTTTTGAAAGTGG+TGG | + | tig0020938:19152-19171 | Msa1387770:intron | 30.0% |
| TTGAGACAATTGTTTGGAAA+TGG | + | tig0020938:19294-19313 | Msa1387770:intron | 30.0% | |
| AACAATACATGCATTGCAAA+AGG | - | tig0020938:19367-19386 | Msa1387770:intergenic | 30.0% | |
| ! | AAACAACTTGATAGCATACA+TGG | - | tig0020938:19430-19449 | Msa1387770:intergenic | 30.0% |
| TGAGTATATGGCAAGATAAT+CGG | - | tig0020938:19560-19579 | Msa1387770:intergenic | 30.0% | |
| ATGAAATCGGATTGAGTATA+TGG | - | tig0020938:19572-19591 | Msa1387770:intergenic | 30.0% | |
| ACCCAAAAAATAAAACAGAG+AGG | + | tig0020938:19881-19900 | Msa1387770:intron | 30.0% | |
| !!! | CACCTCTCTGTTTTATTTTT+TGG | - | tig0020938:19886-19905 | Msa1387770:intergenic | 30.0% |
| ATAAAACAGAGAGGTGATTT+AGG | + | tig0020938:19890-19909 | Msa1387770:intron | 30.0% | |
| AGGTGATTTAGGTAATAAAG+CGG | + | tig0020938:19901-19920 | Msa1387770:intron | 30.0% | |
| !!! | AAAGCGGATTTTTTTTAACG+AGG | + | tig0020938:19917-19936 | Msa1387770:intron | 30.0% |
| ! | AATTGAATTTTATGCACGGT+TGG | - | tig0020938:20330-20349 | Msa1387770:intergenic | 30.0% |
| TGAACCAAAAAAAAAATGGC+CGG | - | tig0020938:21147-21166 | Msa1387770:intergenic | 30.0% | |
| !!! | TTTTTGGTTCATTCATGGAA+TGG | + | tig0020938:21156-21175 | Msa1387770:intron | 30.0% |
| TCATCAAACATAACATTCAC+CGG | + | tig0020938:21267-21286 | Msa1387770:intron | 30.0% | |
| !! | TTGTGTTAACTCTAAAATGG+TGG | - | tig0020938:21428-21447 | Msa1387770:intergenic | 30.0% |
| ! | AGCTTCTTTTGAATTTTGTG+AGG | - | tig0020938:21629-21648 | Msa1387770:intergenic | 30.0% |
| AGAAAATTCTCCATTTCTTC+GGG | + | tig0020938:22057-22076 | Msa1387770:CDS | 30.0% | |
| ! | CATTTTGTCAATGCAATGTT+TGG | + | tig0020938:22226-22245 | Msa1387770:intron | 30.0% |
| !! | GTTTTTGATCAGTTGTTGTT+TGG | + | tig0020938:22275-22294 | Msa1387770:intron | 30.0% |
| TAAAGAAACATTGCCACAAA+CGG | - | tig0020938:22546-22565 | Msa1387770:intergenic | 30.0% | |
| TTTAGAAATTGTGTTGGACA+TGG | + | tig0020938:22562-22581 | Msa1387770:intron | 30.0% | |
| ! | CTATAGATTTTTCCATCATC+AGG | + | tig0020938:22586-22605 | Msa1387770:intron | 30.0% |
| !!! | TTGTAGTTATTTTGGTGTCT+TGG | + | tig0020938:22634-22653 | Msa1387770:intron | 30.0% |
| !!! | TGTAGTTATTTTGGTGTCTT+GGG | + | tig0020938:22635-22654 | Msa1387770:intron | 30.0% |
| ATTCCTTCACAAATTGGTTA+TGG | + | tig0020938:22749-22768 | Msa1387770:intron | 30.0% | |
| ATTACTATCGCAAAAATAGG+AGG | - | tig0020938:22799-22818 | Msa1387770:intergenic | 30.0% | |
| TGCATGACAAGTTATATGTA+AGG | + | tig0020938:22886-22905 | Msa1387770:intron | 30.0% | |
| TTATATGTAAGGCAGCTATA+AGG | + | tig0020938:22897-22916 | Msa1387770:intron | 30.0% | |
| ATAGAGATACCATCGTTTAA+TGG | + | tig0020938:23282-23301 | Msa1387770:intron | 30.0% | |
| TTTAATGGCACTTGAAATAG+AGG | + | tig0020938:23297-23316 | Msa1387770:intron | 30.0% | |
| ACTTATTCTCTAGCAAATCA+TGG | - | tig0020938:23491-23510 | Msa1387770:intergenic | 30.0% | |
| TTGCTAGAGAATAAGTTACT+AGG | + | tig0020938:23495-23514 | Msa1387770:intron | 30.0% | |
| CAATTTCAGCAAAAACATGA+AGG | - | tig0020938:23670-23689 | Msa1387770:intergenic | 30.0% | |
| ATGCTTATGTTTACCTAGAA+TGG | + | tig0020938:23697-23716 | Msa1387770:intron | 30.0% | |
| GTAAATGTGTTTACCATTCT+AGG | - | tig0020938:23713-23732 | Msa1387770:intergenic | 30.0% | |
| !! | GTTCTAACTTCAAAAGTACT+CGG | + | tig0020938:23855-23874 | Msa1387770:intron | 30.0% |
| !! | TTCTAACTTCAAAAGTACTC+GGG | + | tig0020938:23856-23875 | Msa1387770:intron | 30.0% |
| !! | AATCGATCCATTTTAGAGAA+CGG | + | tig0020938:24210-24229 | Msa1387770:CDS | 30.0% |
| ! | AGTTTTCTCACACTTACAAA+TGG | + | tig0020938:24267-24286 | Msa1387770:intron | 30.0% |
| AGATATGCATGCTAATTAGA+CGG | - | tig0020938:24305-24324 | Msa1387770:intergenic | 30.0% | |
| ATCAAACTAGAACACAATGA+CGG | - | tig0020938:24328-24347 | Msa1387770:intergenic | 30.0% | |
| !! | TATTTGTTTGTTTTCCTCTC+AGG | + | tig0020938:24352-24371 | Msa1387770:intron | 30.0% |
| GAATCATAAACGACCAATAA+GGG | - | tig0020938:24446-24465 | Msa1387770:intergenic | 30.0% | |
| TGAATCATAAACGACCAATA+AGG | - | tig0020938:24447-24466 | Msa1387770:intergenic | 30.0% | |
| TTACACTCATACCATAAAGT+TGG | + | tig0020938:24488-24507 | Msa1387770:intron | 30.0% | |
| TATAGCTACATTGCATATCA+AGG | - | tig0020938:24553-24572 | Msa1387770:intergenic | 30.0% | |
| ACATTTATTGCTGAATACAC+TGG | + | tig0020938:24605-24624 | Msa1387770:CDS | 30.0% | |
| TTAAAAGGATAGAACACTAG+GGG | + | tig0020938:24817-24836 | Msa1387770:intron | 30.0% | |
| !! | ATATAAAATGGACTGCAAGA+AGG | - | tig0020938:24905-24924 | Msa1387770:intergenic | 30.0% |
| AACATGTCCAATTTATATGC+AGG | + | tig0020938:25045-25064 | Msa1387770:intron | 30.0% | |
| ACATGTCCAATTTATATGCA+GGG | + | tig0020938:25046-25065 | Msa1387770:intron | 30.0% | |
| TGTGTGAGATATGATGTTAA+TGG | + | tig0020938:25095-25114 | Msa1387770:CDS | 30.0% | |
| TATGTGGCTTAGTAATTATG+TGG | + | tig0020938:25411-25430 | Msa1387770:three_prime_UTR | 30.0% | |
| ! | AAATGAAGAAGGTTTTCCTA+GGG | - | tig0020938:25456-25475 | Msa1387770:intergenic | 30.0% |
| ! | TAAATGAAGAAGGTTTTCCT+AGG | - | tig0020938:25457-25476 | Msa1387770:intergenic | 30.0% |
| CAGGACGATGACTAATATAA+TGG | + | tig0020938:16969-16988 | Msa1387770:intron | 35.0% | |
| GATGACTAATATAATGGCGA+GGG | + | tig0020938:16975-16994 | Msa1387770:CDS | 35.0% | |
| TAAATATGCAGTGGTTGAGA+AGG | + | tig0020938:16999-17018 | Msa1387770:CDS | 35.0% | |
| AAACCACTAGACTGTAACAA+CGG | - | tig0020938:17351-17370 | Msa1387770:intergenic | 35.0% | |
| ! | GACGTTTTATGTGGAATCAT+GGG | + | tig0020938:17380-17399 | Msa1387770:intron | 35.0% |
| TAAACATACATGCATAGGGA+GGG | - | tig0020938:17430-17449 | Msa1387770:intergenic | 35.0% | |
| TTAAACATACATGCATAGGG+AGG | - | tig0020938:17431-17450 | Msa1387770:intergenic | 35.0% | |
| ACATATGGTGGCACAATTTA+TGG | + | tig0020938:17953-17972 | Msa1387770:intron | 35.0% | |
| GCAATACATGCATTGTTCAT+TGG | + | tig0020938:18014-18033 | Msa1387770:intron | 35.0% | |
| CCCTTGATTCAAACAAATGA+AGG | - | tig0020938:18295-18314 | Msa1387770:intergenic | 35.0% | |
| TAAAAGCTCCAAAACAAGCA+TGG | - | tig0020938:18342-18361 | Msa1387770:intergenic | 35.0% | |
| !! | CTTTTAAAGACCTCGTCTAT+TGG | + | tig0020938:18356-18375 | Msa1387770:intron | 35.0% |
| TCTTTGAATACCAAGCTAAC+TGG | + | tig0020938:18412-18431 | Msa1387770:intron | 35.0% | |
| ATATAGTTGTTAGGAAAGGG+TGG | + | tig0020938:18452-18471 | Msa1387770:intron | 35.0% | |
| AGATAGTTGTTCAGAAATGG+TGG | + | tig0020938:18740-18759 | Msa1387770:intron | 35.0% | |
| GCTTTAATGTGATTCGAAGT+CGG | + | tig0020938:18774-18793 | Msa1387770:intron | 35.0% | |
| TTTGGAAATTGGAAAACAGG+TGG | + | tig0020938:18830-18849 | Msa1387770:intron | 35.0% | |
| ACACTAAAGTGATTCGTTGT+CGG | + | tig0020938:19041-19060 | Msa1387770:intron | 35.0% | |
| GAAAGTGGTGGTACAATTTA+TGG | + | tig0020938:19164-19183 | Msa1387770:intron | 35.0% | |
| ACTTTAATGCGAGTCATAGT+CGG | + | tig0020938:19331-19350 | Msa1387770:intron | 35.0% | |
| GCAATGCATGTATTGTTCAT+TGG | + | tig0020938:19370-19389 | Msa1387770:intron | 35.0% | |
| GTTCATTGGAAATTGAGAAG+AGG | + | tig0020938:19384-19403 | Msa1387770:intron | 35.0% | |
| ATGATGTTGAGACAGTTGTT+TGG | + | tig0020938:19758-19777 | Msa1387770:intron | 35.0% | |
| TGAGACAGTTGTTTGGAAAA+AGG | + | tig0020938:19765-19784 | Msa1387770:intron | 35.0% | |
| AAATGGCATACATGTTCTTG+TGG | + | tig0020938:20413-20432 | Msa1387770:intron | 35.0% | |
| AGTGAATAAATCAGGTGCTA+GGG | - | tig0020938:20488-20507 | Msa1387770:intergenic | 35.0% | |
| AAGTGAATAAATCAGGTGCT+AGG | - | tig0020938:20489-20508 | Msa1387770:intergenic | 35.0% | |
| TGTATGCAACATTTGTCTCT+AGG | - | tig0020938:20531-20550 | Msa1387770:intergenic | 35.0% | |
| TCAAAGTTTGACATCAAACC+CGG | + | tig0020938:21125-21144 | Msa1387770:intron | 35.0% | |
| !!! | AAACCCGGCCATTTTTTTTT+TGG | + | tig0020938:21140-21159 | Msa1387770:intron | 35.0% |
| GAACCAAAAAAAAAATGGCC+GGG | - | tig0020938:21146-21165 | Msa1387770:intergenic | 35.0% | |
| GTTCATTCATGGAATGGAAA+CGG | + | tig0020938:21162-21181 | Msa1387770:intron | 35.0% | |
| !! | GAATGTTATGTTTGATGACG+TGG | - | tig0020938:21265-21284 | Msa1387770:intergenic | 35.0% |
| GGTTGATTGTGAAATTCGAA+GGG | - | tig0020938:21520-21539 | Msa1387770:intergenic | 35.0% | |
| ! | AGGTTGATTGTGAAATTCGA+AGG | - | tig0020938:21521-21540 | Msa1387770:intergenic | 35.0% |
| ! | GATTAAGCTTGATAGCTTGA+TGG | - | tig0020938:21591-21610 | Msa1387770:intergenic | 35.0% |
| ! | TTGAATTTTGTGAGGTGCAT+GGG | - | tig0020938:21621-21640 | Msa1387770:intergenic | 35.0% |
| ! | TTTGAATTTTGTGAGGTGCA+TGG | - | tig0020938:21622-21641 | Msa1387770:intergenic | 35.0% |
| TTGTGTGACAAATGTGACAA+TGG | + | tig0020938:21815-21834 | Msa1387770:CDS | 35.0% | |
| ! | GTACATTGAATCTTGATTCG+TGG | + | tig0020938:22354-22373 | Msa1387770:intron | 35.0% |
| AAAGAAACATTGCCACAAAC+GGG | - | tig0020938:22545-22564 | Msa1387770:intergenic | 35.0% | |
| !! | TTTCACTAGCTTGCAGATTT+TGG | + | tig0020938:22925-22944 | Msa1387770:intron | 35.0% |
| !! | GTTGTTTGATTTGAAGGCAA+AGG | + | tig0020938:22974-22993 | Msa1387770:intron | 35.0% |
| ATAACAACTGCTAAGCAGTT+AGG | - | tig0020938:23015-23034 | Msa1387770:intergenic | 35.0% | |
| GCTATCTGTTAAGGTAATAC+TGG | - | tig0020938:23245-23264 | Msa1387770:intergenic | 35.0% | |
| ! | TTTCAAGTGCCATTAAACGA+TGG | - | tig0020938:23294-23313 | Msa1387770:intergenic | 35.0% |
| !! | CTTGAAATAGAGGCATCAAA+AGG | + | tig0020938:23307-23326 | Msa1387770:intron | 35.0% |
| !! | GTCTTTTGTGTCACTAAACA+TGG | - | tig0020938:23337-23356 | Msa1387770:intergenic | 35.0% |
| !! | TGATTAAGTTGGAGTCTTCA+CGG | + | tig0020938:23361-23380 | Msa1387770:intron | 35.0% |
| CGGAACAAGAAGAATTGAAA+TGG | + | tig0020938:23381-23400 | Msa1387770:intron | 35.0% | |
| AGAAGAATTGAAATGGATGC+TGG | + | tig0020938:23388-23407 | Msa1387770:intron | 35.0% | |
| !!! | TTTTGGCTTACTAGGTGTAT+AGG | + | tig0020938:23574-23593 | Msa1387770:intron | 35.0% |
| ! | ATAGCATCTAAAGTCCAGAA+TGG | - | tig0020938:24000-24019 | Msa1387770:intergenic | 35.0% |
| CTAATTAGACGGTTTGCAAA+AGG | - | tig0020938:24294-24313 | Msa1387770:intergenic | 35.0% | |
| TCGTTTATGATTCATGCCAA+GGG | + | tig0020938:24453-24472 | Msa1387770:CDS | 35.0% | |
| TATGCAATGTAGCTATACTG+TGG | + | tig0020938:24556-24575 | Msa1387770:intron | 35.0% | |
| TAACATGCAATAAGTGAGAC+AGG | - | tig0020938:24789-24808 | Msa1387770:intergenic | 35.0% | |
| AATGGTATGCCACAGAAAAA+TGG | - | tig0020938:24855-24874 | Msa1387770:intergenic | 35.0% | |
| ATGATGTTAATGGTGAAAGC+CGG | + | tig0020938:25105-25124 | Msa1387770:CDS | 35.0% | |
| CTCAGACAAAATGATGAGTT+GGG | - | tig0020938:25208-25227 | Msa1387770:intergenic | 35.0% | |
| TCATGAAAATTCTTTCCCGA+GGG | - | tig0020938:25285-25304 | Msa1387770:intergenic | 35.0% | |
| ATCATGAAAATTCTTTCCCG+AGG | - | tig0020938:25286-25305 | Msa1387770:intergenic | 35.0% | |
| ! | TGTATTTTACGCCATATAGC+TGG | + | tig0020938:25382-25401 | Msa1387770:three_prime_UTR | 35.0% |
| ACATAATTAGGCCAGCTATA+TGG | - | tig0020938:25396-25415 | Msa1387770:intergenic | 35.0% | |
| ! | ATATAGCTGGCCTAATTATG+TGG | + | tig0020938:25395-25414 | Msa1387770:three_prime_UTR | 35.0% |
| !! | AGTCTGTTGGCTTCTTCTTT+CGG | - | tig0020938:16927-16946 | Msa0063670:intergenic | 40.0% |
| CGATGACTAATATAATGGCG+AGG | + | tig0020938:16974-16993 | Msa1387770:CDS | 40.0% | |
| TTGTGTGACAAATGCGACAA+AGG | + | tig0020938:17084-17103 | Msa1387770:CDS | 40.0% | |
| ! | TCATATGAAGTGTCTGAGAC+CGG | + | tig0020938:17110-17129 | Msa1387770:CDS | 40.0% |
| !! | CTAGAGTTCCTATTGGTTCA+TGG | + | tig0020938:17139-17158 | Msa1387770:CDS | 40.0% |
| AACCACTAGACTGTAACAAC+GGG | - | tig0020938:17350-17369 | Msa1387770:intergenic | 40.0% | |
| GTTGTTACAGTCTAGTGGTT+TGG | + | tig0020938:17350-17369 | Msa1387770:intron | 40.0% | |
| ! | GGACGTTTTATGTGGAATCA+TGG | + | tig0020938:17379-17398 | Msa1387770:intron | 40.0% |
| AAACATACATGCATAGGGAG+GGG | - | tig0020938:17429-17448 | Msa1387770:intergenic | 40.0% | |
| TCACTAACGGTTATGCATCA+GGG | - | tig0020938:17605-17624 | Msa1387770:intergenic | 40.0% | |
| TTCACTAACGGTTATGCATC+AGG | - | tig0020938:17606-17625 | Msa1387770:intergenic | 40.0% | |
| GAAAAGGGTGGCGTAATTTA+TGG | + | tig0020938:17779-17798 | Msa1387770:intron | 40.0% | |
| TGCAAAACAACCAATAGACG+AGG | - | tig0020938:18369-18388 | Msa1387770:intergenic | 40.0% | |
| GGAAAGGGTGACACAATTTA+TGG | + | tig0020938:18608-18627 | Msa1387770:intron | 40.0% | |
| CTTTAATGCGAGTCATAGTC+GGG | + | tig0020938:19332-19351 | Msa1387770:intron | 40.0% | |
| GTGAATAAATCAGGTGCTAG+GGG | - | tig0020938:20487-20506 | Msa1387770:intergenic | 40.0% | |
| !! | TTTGATGACGTGGAATGTTC+TGG | - | tig0020938:21255-21274 | Msa1387770:intergenic | 40.0% |
| TGATTGTGAAATTCGAAGGG+TGG | - | tig0020938:21517-21536 | Msa1387770:intergenic | 40.0% | |
| ! | CTTGATAGCTTGATGGAAGA+CGG | - | tig0020938:21584-21603 | Msa1387770:intergenic | 40.0% |
| ATATAAGAGGGCTGAGTACA+CGG | + | tig0020938:21718-21737 | Msa1387770:intron | 40.0% | |
| ATCGGAACTCGAACAACAAT+TGG | - | tig0020938:21863-21882 | Msa1387770:intergenic | 40.0% | |
| ! | ATTGTTGTTCGAGTTCCGAT+TGG | + | tig0020938:21863-21882 | Msa1387770:CDS | 40.0% |
| ACCTTGACATCAGAACACTT+GGG | - | tig0020938:21902-21921 | Msa1387770:intergenic | 40.0% | |
| AACAATCGTGCTTCTTCTCA+GGG | + | tig0020938:22107-22126 | Msa1387770:CDS | 40.0% | |
| !! | TTGGCTTTGTGAAAGTGATG+TGG | + | tig0020938:22294-22313 | Msa1387770:intron | 40.0% |
| ACAAACGGGCAACTTTCATA+AGG | - | tig0020938:22531-22550 | Msa1387770:intergenic | 40.0% | |
| TTATGAAAGTTGCCCGTTTG+TGG | + | tig0020938:22530-22549 | Msa1387770:intron | 40.0% | |
| AAATTTGTGGAGCCTGATGA+TGG | - | tig0020938:22601-22620 | Msa1387770:intergenic | 40.0% | |
| GTTGCAATGGCGTGTTTATA+TGG | - | tig0020938:22706-22725 | Msa1387770:intergenic | 40.0% | |
| ACCAATTTGTGAAGGAATGC+CGG | - | tig0020938:22747-22766 | Msa1387770:intergenic | 40.0% | |
| CCACCATAACCAATTTGTGA+AGG | - | tig0020938:22755-22774 | Msa1387770:intergenic | 40.0% | |
| CCTTCACAAATTGGTTATGG+TGG | + | tig0020938:22752-22771 | Msa1387770:intron | 40.0% | |
| !! | GTTTGATTTGAAGGCAAAGG+AGG | + | tig0020938:22977-22996 | Msa1387770:intron | 40.0% |
| TAAGCAGTTAGGCGTTTGAT+CGG | - | tig0020938:23004-23023 | Msa1387770:intergenic | 40.0% | |
| GGTTCTTGAGCTATCTGTTA+AGG | - | tig0020938:23254-23273 | Msa1387770:intergenic | 40.0% | |
| ATGGTATCTCTATTGTCAGG+TGG | - | tig0020938:23275-23294 | Msa1387770:intergenic | 40.0% | |
| ACGATGGTATCTCTATTGTC+AGG | - | tig0020938:23278-23297 | Msa1387770:intergenic | 40.0% | |
| CTTTAGATGCTATGAAGCGT+CGG | + | tig0020938:24007-24026 | Msa1387770:intron | 40.0% | |
| TGGTACAGAAGAAAAGGAGA+AGG | + | tig0020938:24049-24068 | Msa1387770:CDS | 40.0% | |
| GGATCTTCTGTAGGAACAAA+TGG | - | tig0020938:24081-24100 | Msa1387770:intergenic | 40.0% | |
| TTCCTACAGAAGATCCTGAT+AGG | + | tig0020938:24085-24104 | Msa1387770:CDS | 40.0% | |
| TGCTGTTAAAGCAGTAGCAA+GGG | - | tig0020938:24130-24149 | Msa1387770:intergenic | 40.0% | |
| ATGCTGTTAAAGCAGTAGCA+AGG | - | tig0020938:24131-24150 | Msa1387770:intergenic | 40.0% | |
| TGCTACTGCTTTAACAGCAT+TGG | + | tig0020938:24131-24150 | Msa1387770:CDS | 40.0% | |
| AATAAGCTGACGTACTTTCC+AGG | + | tig0020938:24168-24187 | Msa1387770:CDS | 40.0% | |
| ATGGATCGATTAGCAGATCT+AGG | - | tig0020938:24201-24220 | Msa1387770:intergenic | 40.0% | |
| ! | CATAGCTATGCAGCGTTTTA+AGG | - | tig0020938:24402-24421 | Msa1387770:intergenic | 40.0% |
| TGCATAGCTATGACTAAACG+AGG | + | tig0020938:24410-24429 | Msa1387770:CDS | 40.0% | |
| CATAAACGACCAATAAGGGA+GGG | - | tig0020938:24442-24461 | Msa1387770:intergenic | 40.0% | |
| TCATAAACGACCAATAAGGG+AGG | - | tig0020938:24443-24462 | Msa1387770:intergenic | 40.0% | |
| GTCGTTTATGATTCATGCCA+AGG | + | tig0020938:24452-24471 | Msa1387770:CDS | 40.0% | |
| GTAAGATGAGTATGTACCCT+TGG | - | tig0020938:24472-24491 | Msa1387770:intergenic | 40.0% | |
| ! | GTTATCTGTGCTGATAAACG+TGG | + | tig0020938:24716-24735 | Msa1387770:CDS | 40.0% |
| !! | TGTGAACGACCATTTTTCTG+TGG | + | tig0020938:24843-24862 | Msa1387770:intron | 40.0% |
| GGACTGCAAGAAGGATTATT+TGG | - | tig0020938:24896-24915 | Msa1387770:intergenic | 40.0% | |
| GTCCAATTTATATGCAGGGA+AGG | + | tig0020938:25050-25069 | Msa1387770:intron | 40.0% | |
| TGCCTTCCCTGCATATAAAT+TGG | - | tig0020938:25055-25074 | Msa1387770:intergenic | 40.0% | |
| AATTTATATGCAGGGAAGGC+AGG | + | tig0020938:25054-25073 | Msa1387770:intron | 40.0% | |
| TGATGTTAATGGTGAAAGCC+GGG | + | tig0020938:25106-25125 | Msa1387770:CDS | 40.0% | |
| TGCTACTCGAGATATTTCCA+AGG | + | tig0020938:25139-25158 | Msa1387770:CDS | 40.0% | |
| GCTACTCGAGATATTTCCAA+GGG | + | tig0020938:25140-25159 | Msa1387770:CDS | 40.0% | |
| CTACTCGAGATATTTCCAAG+GGG | + | tig0020938:25141-25160 | Msa1387770:CDS | 40.0% | |
| TACTCGAGATATTTCCAAGG+GGG | + | tig0020938:25142-25161 | Msa1387770:CDS | 40.0% | |
| GCTCAGACAAAATGATGAGT+TGG | - | tig0020938:25209-25228 | Msa1387770:intergenic | 40.0% | |
| !! | AGGACCAATTTTTAGACCCT+CGG | + | tig0020938:25266-25285 | Msa1387770:three_prime_UTR | 40.0% |
| TTTCCCGAGGGTCTAAAAAT+TGG | - | tig0020938:25273-25292 | Msa1387770:intergenic | 40.0% | |
| AGAGATGAATAGAGAACCCT+AGG | + | tig0020938:25437-25456 | Msa1387770:three_prime_UTR | 40.0% | |
| !! | TGAAGCTGGTTAGCTTACGA+GGG | - | tig0020938:16879-16898 | Msa0063670:intergenic | 45.0% |
| ATATGCAGTGGTTGAGAAGG+AGG | + | tig0020938:17002-17021 | Msa1387770:CDS | 45.0% | |
| TCACACAACAAAAGCTCCTC+AGG | - | tig0020938:17072-17091 | Msa1387770:intergenic | 45.0% | |
| ATAGGAACTCTAGCCAGAAC+CGG | - | tig0020938:17132-17151 | Msa1387770:intergenic | 45.0% | |
| ! | GTTCTGGCTAGAGTTCCTAT+TGG | + | tig0020938:17132-17151 | Msa1387770:CDS | 45.0% |
| GGGCAAATCCATGAACCAAT+AGG | - | tig0020938:17150-17169 | Msa1387770:intergenic | 45.0% | |
| TCCAGCTCAGAACAACACTT+GGG | - | tig0020938:17171-17190 | Msa1387770:intergenic | 45.0% | |
| !! | AGTCTAGTGGTTTGGTTGTG+AGG | + | tig0020938:17358-17377 | Msa1387770:intron | 45.0% |
| ! | GGTTGTGAGGACGTTTTATG+TGG | + | tig0020938:17371-17390 | Msa1387770:intron | 45.0% |
| TGGAATCATGGGTTCAAACC+TGG | + | tig0020938:17391-17410 | Msa1387770:intron | 45.0% | |
| GGAATCATGGGTTCAAACCT+GGG | + | tig0020938:17392-17411 | Msa1387770:intron | 45.0% | |
| AACATACATGCATAGGGAGG+GGG | - | tig0020938:17428-17447 | Msa1387770:intergenic | 45.0% | |
| ATATGTGGCACCAGTTAGCT+TGG | - | tig0020938:18425-18444 | Msa1387770:intergenic | 45.0% | |
| TTTATGCGTGCGCATTGTTC+TGG | - | tig0020938:21194-21213 | Msa1387770:intergenic | 45.0% | |
| TTGGTTATGCTAACGTGCAC+CGG | - | tig0020938:21232-21251 | Msa1387770:intergenic | 45.0% | |
| ATGACGTGGAATGTTCTGGT+TGG | - | tig0020938:21251-21270 | Msa1387770:intergenic | 45.0% | |
| CACAATCAACCTCACCTGAA+TGG | + | tig0020938:21529-21548 | Msa1387770:intron | 45.0% | |
| CCTTGACATCAGAACACTTG+GGG | - | tig0020938:21901-21920 | Msa1387770:intergenic | 45.0% | |
| GACCTTGACATCAGAACACT+TGG | - | tig0020938:21903-21922 | Msa1387770:intergenic | 45.0% | |
| ! | AGAAGAAGCACGATTGTTCC+CGG | - | tig0020938:22105-22124 | Msa1387770:intergenic | 45.0% |
| GAACAATCGTGCTTCTTCTC+AGG | + | tig0020938:22106-22125 | Msa1387770:CDS | 45.0% | |
| GAGTTGAGTAATGCTGTCGA+TGG | + | tig0020938:22662-22681 | Msa1387770:intron | 45.0% | |
| TTGAGTAATGCTGTCGATGG+CGG | + | tig0020938:22665-22684 | Msa1387770:intron | 45.0% | |
| GCAATGGCGTGTTTATATGG+CGG | - | tig0020938:22703-22722 | Msa1387770:intergenic | 45.0% | |
| AAACACGCCATTGCAACCTA+AGG | + | tig0020938:22709-22728 | Msa1387770:intron | 45.0% | |
| ATCGCAAAAATAGGAGGCCA+TGG | - | tig0020938:22793-22812 | Msa1387770:intergenic | 45.0% | |
| !! | CTTGCAGATTTTGGTGCAAC+TGG | + | tig0020938:22934-22953 | Msa1387770:intron | 45.0% |
| AAGCAGTTAGGCGTTTGATC+GGG | - | tig0020938:23003-23022 | Msa1387770:intergenic | 45.0% | |
| ! | TTGTGGGGATTCTAGCTATG+TGG | + | tig0020938:23117-23136 | Msa1387770:intron | 45.0% |
| ! | CTTTTCTTCTGTACCACCAG+AGG | - | tig0020938:24045-24064 | Msa1387770:intergenic | 45.0% |
| CTCTGGTGGTACAGAAGAAA+AGG | + | tig0020938:24043-24062 | Msa1387770:CDS | 45.0% | |
| CTCCTATCAGGATCTTCTGT+AGG | - | tig0020938:24090-24109 | Msa1387770:intergenic | 45.0% | |
| CTACAGAAGATCCTGATAGG+AGG | + | tig0020938:24088-24107 | Msa1387770:CDS | 45.0% | |
| ATTTGCTTCAGCCTCCTATC+AGG | - | tig0020938:24102-24121 | Msa1387770:intergenic | 45.0% | |
| TGATAGGAGGCTGAAGCAAA+TGG | + | tig0020938:24101-24120 | Msa1387770:CDS | 45.0% | |
| !! | CGATCCATTTTAGAGAACGG+TGG | + | tig0020938:24213-24232 | Msa1387770:CDS | 45.0% |
| ! | CATGCCACCGTTCTCTAAAA+TGG | - | tig0020938:24220-24239 | Msa1387770:intergenic | 45.0% |
| TTCCTCTCAGGCTCTTACTA+AGG | + | tig0020938:24364-24383 | Msa1387770:intron | 45.0% | |
| TTCCTTAGTAAGAGCCTGAG+AGG | - | tig0020938:24369-24388 | Msa1387770:intergenic | 45.0% | |
| GCAATGTAGCTATACTGTGG+AGG | + | tig0020938:24559-24578 | Msa1387770:intron | 45.0% | |
| AACATTGCTCGCTTCATCAG+TGG | + | tig0020938:24740-24759 | Msa1387770:CDS | 45.0% | |
| GAGTAGCAACCAATAAGACC+CGG | - | tig0020938:25127-25146 | Msa1387770:intergenic | 45.0% | |
| ATAATAAAGCCTCTCCCCCT+TGG | - | tig0020938:25159-25178 | Msa1387770:intergenic | 45.0% | |
| !! | GGACCAATTTTTAGACCCTC+GGG | + | tig0020938:25267-25286 | Msa1387770:three_prime_UTR | 45.0% |
| !!! | ATATATTTTATTTTCATTAT+TGG | - | tig0020938:17473-17492 | Msa1387770:intergenic | 5.0% |
| !! | ATTGTAAAAAAATTATAAAT+TGG | + | tig0020938:20832-20851 | Msa1387770:intron | 5.0% |
| !! | TTGTAAAAAAATTATAAATT+GGG | + | tig0020938:20833-20852 | Msa1387770:intron | 5.0% |
| !! | AAGCTGGTTAGCTTACGAGG+GGG | - | tig0020938:16877-16896 | Msa0063670:intergenic | 50.0% |
| !! | GAAGCTGGTTAGCTTACGAG+GGG | - | tig0020938:16878-16897 | Msa0063670:intergenic | 50.0% |
| !! | GTGAAGCTGGTTAGCTTACG+AGG | - | tig0020938:16880-16899 | Msa0063670:intergenic | 50.0% |
| !! | CTGTTGGCTTCTTCTTTCGG+TGG | - | tig0020938:16924-16943 | Msa0063670:intergenic | 50.0% |
| ATGTGTGAGCGATGTGGATC+TGG | + | tig0020938:17039-17058 | Msa1387770:CDS | 50.0% | |
| TGGATCTGGTGAACAACCTG+AGG | + | tig0020938:17053-17072 | Msa1387770:CDS | 50.0% | |
| CCAGCTCAGAACAACACTTG+GGG | - | tig0020938:17170-17189 | Msa1387770:intergenic | 50.0% | |
| CTCCAGCTCAGAACAACACT+TGG | - | tig0020938:17172-17191 | Msa1387770:intergenic | 50.0% | |
| GTCCCGTTGTTACAGTCTAG+TGG | + | tig0020938:17345-17364 | Msa1387770:intron | 50.0% | |
| ! | TTAAGTACGTGTCGGTCACC+AGG | + | tig0020938:17447-17466 | Msa1387770:intron | 50.0% |
| ! | GCTCGTGACCATGCTTGTTT+TGG | + | tig0020938:18331-18350 | Msa1387770:intron | 50.0% |
| TTACGTTACTCTCTCACCCG+CGG | - | tig0020938:21309-21328 | Msa1387770:intergenic | 50.0% | |
| ! | TTTTGTGAGGTGCATGGGTG+CGG | - | tig0020938:21616-21635 | Msa1387770:intergenic | 50.0% |
| ACCTCCTGTGTGAGCAATGT+GGG | + | tig0020938:21765-21784 | Msa1387770:CDS | 50.0% | |
| TCACACAAAAGCAGCTCCTC+CGG | - | tig0020938:21803-21822 | Msa1387770:intergenic | 50.0% | |
| GAACACTTGGGGCAAATCCA+CGG | - | tig0020938:21890-21909 | Msa1387770:intergenic | 50.0% | |
| CCCCAAGTGTTCTGATGTCA+AGG | + | tig0020938:21898-21917 | Msa1387770:CDS | 50.0% | |
| CGCAGGGATTCTCTTGATTC+CGG | + | tig0020938:22083-22102 | Msa1387770:CDS | 50.0% | |
| GCAGGGATTCTCTTGATTCC+GGG | + | tig0020938:22084-22103 | Msa1387770:CDS | 50.0% | |
| TGTGAAGGAATGCCGGCAAA+TGG | - | tig0020938:22740-22759 | Msa1387770:intergenic | 50.0% | |
| GCCGGCATTCCTTCACAAAT+TGG | + | tig0020938:22743-22762 | Msa1387770:intron | 50.0% | |
| GGTTACCGAAAAATCCGCCA+TGG | + | tig0020938:22773-22792 | Msa1387770:intron | 50.0% | |
| GCAAAAATAGGAGGCCATGG+CGG | - | tig0020938:22790-22809 | Msa1387770:intergenic | 50.0% | |
| TTCTGTACCACCAGAGGTCT+TGG | - | tig0020938:24039-24058 | Msa1387770:intergenic | 50.0% | |
| GCTGACGTACTTTCCAGGAA+TGG | + | tig0020938:24173-24192 | Msa1387770:CDS | 50.0% | |
| TTTAGAGAACGGTGGCATGC+AGG | + | tig0020938:24221-24240 | Msa1387770:CDS | 50.0% | |
| AGGCCAATTCCCTCCCTTAT+TGG | + | tig0020938:24430-24449 | Msa1387770:CDS | 50.0% | |
| CGACCAATAAGGGAGGGAAT+TGG | - | tig0020938:24436-24455 | Msa1387770:intergenic | 50.0% | |
| ! | TGGTGAAAGCCGGGTCTTAT+TGG | + | tig0020938:25115-25134 | Msa1387770:CDS | 50.0% |
| GAGATATTTCCAAGGGGGAG+AGG | + | tig0020938:25147-25166 | Msa1387770:CDS | 50.0% | |
| GGCTTCTTCTTTCGGTGGCA+CGG | - | tig0020938:16919-16938 | Msa0063670:intergenic | 55.0% | |
| AGCCAACAGACTCGTCATCG+CGG | + | tig0020938:16935-16954 | Msa1387770:CDS | 55.0% | |
| GGCGAGGGCTAAATATGCAG+TGG | + | tig0020938:16990-17009 | Msa1387770:CDS | 55.0% | |
| GACTGCATGTGTGAGCGATG+TGG | + | tig0020938:17033-17052 | Msa1387770:CDS | 55.0% | |
| ! | GAAGTGTCTGAGACCGGTTC+TGG | + | tig0020938:17116-17135 | Msa1387770:CDS | 55.0% |
| ! | CCCCAAGTGTTGTTCTGAGC+TGG | + | tig0020938:17167-17186 | Msa1387770:CDS | 55.0% |
| ATGCATAGGGAGGGGGAATG+TGG | - | tig0020938:17421-17440 | Msa1387770:intergenic | 55.0% | |
| CGGGAGAGTGAGACACTTAC+CGG | - | tig0020938:21289-21308 | Msa1387770:intergenic | 55.0% | |
| GTAAGTGTCTCACTCTCCCG+CGG | + | tig0020938:21289-21308 | Msa1387770:intron | 55.0% | |
| TAAGTGTCTCACTCTCCCGC+GGG | + | tig0020938:21290-21309 | Msa1387770:intron | 55.0% | |
| TACGTTACTCTCTCACCCGC+GGG | - | tig0020938:21308-21327 | Msa1387770:intergenic | 55.0% | |
| CAACCTCACCTGAATGGCTC+CGG | + | tig0020938:21535-21554 | Msa1387770:intron | 55.0% | |
| AGCTTGATGGAAGACGGCGA+TGG | - | tig0020938:21578-21597 | Msa1387770:intergenic | 55.0% | |
| TAAGAGGGCTGAGTACACGG+TGG | + | tig0020938:21721-21740 | Msa1387770:intron | 55.0% | |
| GTGGCTGAGGAGGAGGATTA+CGG | + | tig0020938:21740-21759 | Msa1387770:CDS | 55.0% | |
| GACCTCCTGTGTGAGCAATG+TGG | + | tig0020938:21764-21783 | Msa1387770:CDS | 55.0% | |
| ACCCACATTGCTCACACAGG+AGG | - | tig0020938:21769-21788 | Msa1387770:intergenic | 55.0% | |
| CTGTGTGAGCAATGTGGGTC+CGG | + | tig0020938:21770-21789 | Msa1387770:CDS | 55.0% | |
| ATGTGGGTCCGGTGAACAAC+CGG | + | tig0020938:21781-21800 | Msa1387770:CDS | 55.0% | |
| ! | TTCGAGTTCCGATTGGTCCG+TGG | + | tig0020938:21870-21889 | Msa1387770:CDS | 55.0% |
| GGGCAAATCCACGGACCAAT+CGG | - | tig0020938:21881-21900 | Msa1387770:intergenic | 55.0% | |
| TCCATTTCTTCGGGCTTCGC+AGG | + | tig0020938:22066-22085 | Msa1387770:CDS | 55.0% | |
| CCATTTCTTCGGGCTTCGCA+GGG | + | tig0020938:22067-22086 | Msa1387770:CDS | 55.0% | |
| !! | GTAATGCTGTCGATGGCGGA+AGG | + | tig0020938:22669-22688 | Msa1387770:intron | 55.0% |
| ! | GGTGGCACCTTAGGTTGCAA+TGG | - | tig0020938:22719-22738 | Msa1387770:intergenic | 55.0% |
| ! | CCTAAGGTGCCACCATTTGC+CGG | + | tig0020938:22725-22744 | Msa1387770:intron | 55.0% |
| GAAGGAATGCCGGCAAATGG+TGG | - | tig0020938:22737-22756 | Msa1387770:intergenic | 55.0% | |
| !!! | GGAGGCCATGGCGGATTTTT+CGG | - | tig0020938:22781-22800 | Msa1387770:intergenic | 55.0% |
| GCAGATCTAGGAGCCATTCC+TGG | - | tig0020938:24189-24208 | Msa1387770:intergenic | 55.0% | |
| ! | GTTAGCTTACGAGGGGGAGG+TGG | - | tig0020938:16871-16890 | Msa0063670:intergenic | 60.0% |
| !! | CTGGTTAGCTTACGAGGGGG+AGG | - | tig0020938:16874-16893 | Msa0063670:intergenic | 60.0% |
| ATGTGTGCGGTGGGTGAAGC+TGG | - | tig0020938:16893-16912 | Msa0063670:intergenic | 60.0% | |
| GCCAACAGACTCGTCATCGC+GGG | + | tig0020938:16936-16955 | Msa1387770:CDS | 60.0% | |
| ACCCGCGATGACGAGTCTGT+TGG | - | tig0020938:16940-16959 | Msa1387770:intergenic | 60.0% | |
| CATCGCGGGTGACGAAGTAC+AGG | + | tig0020938:16950-16969 | Msa1387770:intron | 60.0% | |
| CTCGAAGGTGGAGGATGAGG+AGG | - | tig0020938:21660-21679 | Msa1387770:intergenic | 60.0% | |
| CTCCTCATCCTCCACCTTCG+AGG | + | tig0020938:21658-21677 | Msa1387770:CDS | 60.0% | |
| CTCCTCGAAGGTGGAGGATG+AGG | - | tig0020938:21663-21682 | Msa1387770:intergenic | 60.0% | |
| CTCATCCTCCACCTTCGAGG+AGG | + | tig0020938:21661-21680 | Msa1387770:CDS | 60.0% | |
| ATCCTCCACCTTCGAGGAGG+AGG | + | tig0020938:21664-21683 | Msa1387770:CDS | 60.0% | |
| TCCACCTTCGAGGAGGAGGA+GGG | + | tig0020938:21668-21687 | Msa1387770:CDS | 60.0% | |
| ATTCCCCTCCTCCTCCTCGA+AGG | - | tig0020938:21675-21694 | Msa1387770:intergenic | 60.0% | |
| TGAGTACACGGTGGCTGAGG+AGG | + | tig0020938:21730-21749 | Msa1387770:CDS | 60.0% | |
| CGGACCCACATTGCTCACAC+AGG | - | tig0020938:21772-21791 | Msa1387770:intergenic | 60.0% | |
| CAGCTCCTCCGGTTGTTCAC+CGG | - | tig0020938:21792-21811 | Msa1387770:intergenic | 60.0% | |
| CCCTGCGAAGCCCGAAGAAA+TGG | - | tig0020938:22070-22089 | Msa1387770:intergenic | 60.0% | |
| CCGGCAAATGGTGGCACCTT+AGG | - | tig0020938:22728-22747 | Msa1387770:intergenic | 60.0% | |
| TCGGAGACGTCCAAGACCTC+TGG | + | tig0020938:24026-24045 | Msa1387770:CDS | 60.0% | |
| GAGACGTCCAAGACCTCTGG+TGG | + | tig0020938:24029-24048 | Msa1387770:CDS | 60.0% | |
| GCACGGTGCATGTGTGCGGT+GGG | - | tig0020938:16902-16921 | Msa0063670:intergenic | 65.0% | |
| GGTGGCACGGTGCATGTGTG+CGG | - | tig0020938:16906-16925 | Msa0063670:intergenic | 65.0% | |
| GAGGGGGAATGTGGTGACCC+AGG | - | tig0020938:17412-17431 | Msa1387770:intergenic | 65.0% | |
| TCGCCGGAGCCATTCAGGTG+AGG | - | tig0020938:21541-21560 | Msa1387770:intergenic | 65.0% | |
| AGCTGTCGCCGGAGCCATTC+AGG | - | tig0020938:21546-21565 | Msa1387770:intergenic | 65.0% | |
| AATGGCTCCGGCGACAGCTC+CGG | + | tig0020938:21547-21566 | Msa1387770:intron | 65.0% | |
| GAAGACGGCGATGGAGACGC+CGG | - | tig0020938:21569-21588 | Msa1387770:intergenic | 65.0% | |
| TGTGAGGTGCATGGGTGCGG+CGG | - | tig0020938:21613-21632 | Msa1387770:intergenic | 65.0% | |
| CTCCTCCTCCTCGAAGGTGG+AGG | - | tig0020938:21669-21688 | Msa1387770:intergenic | 65.0% | |
| CTCCACCTTCGAGGAGGAGG+AGG | + | tig0020938:21667-21686 | Msa1387770:CDS | 65.0% | |
| CCACCTTCGAGGAGGAGGAG+GGG | + | tig0020938:21669-21688 | Msa1387770:CDS | 65.0% | |
| GGCTGAGTACACGGTGGCTG+AGG | + | tig0020938:21727-21746 | Msa1387770:CDS | 65.0% | |
| GTACACGGTGGCTGAGGAGG+AGG | + | tig0020938:21733-21752 | Msa1387770:CDS | 65.0% | |
| TGGGTCCGGTGAACAACCGG+AGG | + | tig0020938:21784-21803 | Msa1387770:CDS | 65.0% | |
| CTTACGAGGGGGAGGTGGCG+AGG | - | tig0020938:16866-16885 | Msa0063670:intergenic | 70.0% | |
| GGCACGGTGCATGTGTGCGG+TGG | - | tig0020938:16903-16922 | Msa0063670:intergenic | 70.0% | |
| CCCCTCCTCCTCCTCGAAGG+TGG | - | tig0020938:21672-21691 | Msa1387770:intergenic | 70.0% | |
| GGAGACGCCGGAGCTGTCGC+CGG | - | tig0020938:21557-21576 | Msa1387770:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020938 | gene | 16831 | 25567 | 16831 | ID=Msa1387770;Name=Msa1387770 |
| tig0020938 | mRNA | 16831 | 25567 | 16831 | ID=Msa1387770-mRNA-1;Parent=Msa1387770;Name=Msa1387770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=25|0.62|0.55|1|0.75|0.66|9|341|494 |
| tig0020938 | exon | 16831 | 16965 | 16831 | ID=Msa1387770-mRNA-1:exon:10796;Parent=Msa1387770-mRNA-1 |
| tig0020938 | exon | 16972 | 17201 | 16972 | ID=Msa1387770-mRNA-1:exon:10797;Parent=Msa1387770-mRNA-1 |
| tig0020938 | exon | 21564 | 21709 | 21564 | ID=Msa1387770-mRNA-1:exon:10798;Parent=Msa1387770-mRNA-1 |
| tig0020938 | exon | 21725 | 21935 | 21725 | ID=Msa1387770-mRNA-1:exon:10799;Parent=Msa1387770-mRNA-1 |
| tig0020938 | exon | 22045 | 22128 | 22045 | ID=Msa1387770-mRNA-1:exon:10800;Parent=Msa1387770-mRNA-1 |
| tig0020938 | exon | 24013 | 24242 | 24013 | ID=Msa1387770-mRNA-1:exon:10801;Parent=Msa1387770-mRNA-1 |
| tig0020938 | exon | 24374 | 24474 | 24374 | ID=Msa1387770-mRNA-1:exon:10802;Parent=Msa1387770-mRNA-1 |
| tig0020938 | exon | 24568 | 24780 | 24568 | ID=Msa1387770-mRNA-1:exon:10803;Parent=Msa1387770-mRNA-1 |
| tig0020938 | exon | 25067 | 25567 | 25067 | ID=Msa1387770-mRNA-1:exon:10804;Parent=Msa1387770-mRNA-1 |
| tig0020938 | five_prime_UTR | 16831 | 16855 | 16831 | ID=Msa1387770-mRNA-1:five_prime_utr;Parent=Msa1387770-mRNA-1 |
| tig0020938 | CDS | 16856 | 16965 | 16856 | ID=Msa1387770-mRNA-1:cds;Parent=Msa1387770-mRNA-1 |
| tig0020938 | CDS | 16972 | 17201 | 16972 | ID=Msa1387770-mRNA-1:cds;Parent=Msa1387770-mRNA-1 |
| tig0020938 | CDS | 21564 | 21709 | 21564 | ID=Msa1387770-mRNA-1:cds;Parent=Msa1387770-mRNA-1 |
| tig0020938 | CDS | 21725 | 21935 | 21725 | ID=Msa1387770-mRNA-1:cds;Parent=Msa1387770-mRNA-1 |
| tig0020938 | CDS | 22045 | 22128 | 22045 | ID=Msa1387770-mRNA-1:cds;Parent=Msa1387770-mRNA-1 |
| tig0020938 | CDS | 24013 | 24242 | 24013 | ID=Msa1387770-mRNA-1:cds;Parent=Msa1387770-mRNA-1 |
| tig0020938 | CDS | 24374 | 24474 | 24374 | ID=Msa1387770-mRNA-1:cds;Parent=Msa1387770-mRNA-1 |
| tig0020938 | CDS | 24568 | 24780 | 24568 | ID=Msa1387770-mRNA-1:cds;Parent=Msa1387770-mRNA-1 |
| tig0020938 | CDS | 25067 | 25226 | 25067 | ID=Msa1387770-mRNA-1:cds;Parent=Msa1387770-mRNA-1 |
| tig0020938 | three_prime_UTR | 25227 | 25567 | 25227 | ID=Msa1387770-mRNA-1:three_prime_utr;Parent=Msa1387770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
