AlfalfaGEDB | Msa1387890

M. sativa cultivar zhongmu-4 / Msa1387890

KEGG: K14503
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048532 GO:0048545 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1904961 GO:2000112 GO:2000113 GO:2001141
PFAM: PF05687.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1387890	XP_013466060.1	90.763	249	23	0	1	249	1	249	5.85e-165	466

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1387890	sp\|Q8S307\|BZR1_ARATH	45.541	314	93	8	13	248	22	335	4.28e-62	201

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1387890	A0A072VDJ6	90.763	249	23	0	1	249	1	249	2.79e-165	466

TFs/TRs:

Gene ID	Type	Classification
Msa1387890	TF	BES1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1387890	MtrunA17_Chr1g0154651	90.763	249	23	0	1	249	1	249	5.38e-169	466
Msa1387890	MtrunA17_Chr3g0141401	46.006	313	103	7	1	247	1	313	2.34e-58	187
Msa1387890	MtrunA17_Chr2g0315211	37.931	319	109	13	14	246	6	321	3.39e-25	101
Msa1387890	MtrunA17_Chr5g0403631	43.842	203	68	4	14	175	9	206	8.53e-25	100
Msa1387890	MtrunA17_Chr2g0315201	62.500	88	32	1	14	101	6	92	2.40e-17	79.7
Msa1387890	MtrunA17_Chr5g0408851	54.545	55	25	0	26	80	62	116	1.80e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1387890	AT1G75080.2	45.541	314	93	8	13	248	22	335	4.35e-63	201
Msa1387890	AT1G75080.1	45.541	314	93	8	13	248	22	335	4.35e-63	201
Msa1387890	AT1G19350.3	44.089	313	97	8	13	247	43	355	1.16e-60	195
Msa1387890	AT1G19350.5	44.089	313	97	8	13	247	21	333	1.67e-60	194
Msa1387890	AT1G19350.1	44.089	313	97	8	13	247	21	333	1.67e-60	194
Msa1387890	AT1G19350.6	44.089	313	97	8	13	247	21	333	1.67e-60	194
Msa1387890	AT1G19350.4	44.089	313	97	8	13	247	21	333	1.67e-60	194
Msa1387890	AT3G50750.1	40.559	286	110	9	1	243	1	269	6.59e-34	124
Msa1387890	AT4G36780.1	50.000	164	46	2	14	141	16	179	5.05e-33	121
Msa1387890	AT4G18890.1	36.000	300	102	12	14	246	6	282	1.98e-22	93.6
Msa1387890	AT1G78700.1	32.727	330	107	9	14	243	6	320	1.48e-19	86.3
Msa1387890	AT2G45880.1	51.515	66	32	0	13	78	68	133	7.15e-14	71.2
Msa1387890	AT5G45300.1	54.237	59	27	0	26	84	98	156	8.45e-13	68.2
Msa1387890	AT5G45300.2	54.237	59	27	0	26	84	98	156	8.52e-13	68.2
Msa1387890	AT5G45300.3	54.237	59	27	0	26	84	112	170	8.58e-13	68.2

Find 69 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACAAATGGGACATGGATTT+TGG	0.099494	tig0020980:-95895	None:intergenic
ATCGAATATCTTTGATGTTA+TGG	0.271986	tig0020980:-95117	None:intergenic
TGATGAGGGATTGGATGATT+TGG	0.284092	tig0020980:+96297	Msa1387890:CDS
AGATGCAGCAAAAGGGTAAT+TGG	0.291581	tig0020980:-96086	None:intergenic
CTCCATTTCCAATGAATCTA+TGG	0.308568	tig0020980:+96057	Msa1387890:CDS
CTTGGGTTCGTTGGGCTAGC+AGG	0.311924	tig0020980:-96115	None:intergenic
TTGGAACTCACTCTTGGAAC+TGG	0.334633	tig0020980:+96316	Msa1387890:CDS
GAGTAGAGAGGAGGTGTAAC+AGG	0.350527	tig0020980:-95995	None:intergenic
GGAAAATGCCATAGATTCAT+TGG	0.351258	tig0020980:-96065	None:intergenic
TGCCATAGATTCATTGGAAA+TGG	0.364323	tig0020980:-96059	None:intergenic
AACTGGGAAAGGAAAGATTT+AGG	0.375942	tig0020980:+96333	Msa1387890:CDS
GGAATTGAAGTTGGAAAAGA+TGG	0.394254	tig0020980:-95917	None:intergenic
GATGATTTGGAACTCACTCT+TGG	0.402192	tig0020980:+96310	Msa1387890:CDS
TATGAAGGCTTGGGTTCGTT+GGG	0.406355	tig0020980:-96123	None:intergenic
GAAGAGGTTGGCACTGCAAA+TGG	0.411998	tig0020980:-96178	None:intergenic
TTGGGTTCGTTGGGCTAGCA+GGG	0.427382	tig0020980:-96114	None:intergenic
TTGATTGGAGTATGAAGGCT+TGG	0.439266	tig0020980:-96133	None:intergenic
CTCTTCATCTTTCAATGCTG+TGG	0.445261	tig0020980:+96195	Msa1387890:CDS
AGTTGGAAAAGATGGACAAA+TGG	0.453995	tig0020980:-95909	None:intergenic
GCAAAAGGATGGAACTTGAT+TGG	0.457115	tig0020980:-96148	None:intergenic
GGGGTAGAAGATGCAGCAAA+AGG	0.462613	tig0020980:-96094	None:intergenic
TGGTATGAAGGAATTGAAGT+TGG	0.464795	tig0020980:-95926	None:intergenic
GTATGAAGGCTTGGGTTCGT+TGG	0.466162	tig0020980:-96124	None:intergenic
GATATCCACAAAGGAGGAAA+AGG	0.466792	tig0020980:-95962	None:intergenic
ATGGAGTCCCATGCTGGAAT+TGG	0.471276	tig0020980:-96040	None:intergenic
GAAAAGGCTGAGGAGTGAAT+TGG	0.472490	tig0020980:-95946	None:intergenic
CTTCTGCACAAAGAGCTTTG+AGG	0.474572	tig0020980:-95196	None:intergenic
GGTGTAAGGCTTATTGATGT+TGG	0.478866	tig0020980:-96019	None:intergenic
AAAGCTCTTTGTGCAGAAGC+TGG	0.483728	tig0020980:+95200	Msa1387890:CDS
TTGGGGTGCAAGTAAAGCCT+TGG	0.488933	tig0020980:+96257	Msa1387890:CDS
ATTGATGTTGGTGAGTAGAG+AGG	0.496798	tig0020980:-96007	None:intergenic
GCAAATGGAGATTGTGCAAA+AGG	0.501672	tig0020980:-96163	None:intergenic
GGAACTTGATTGGAGTATGA+AGG	0.505849	tig0020980:-96138	None:intergenic
GTTGGAAAAGATGGACAAAT+GGG	0.506046	tig0020980:-95908	None:intergenic
TGGGGTGCAAGTAAAGCCTT+GGG	0.507029	tig0020980:+96258	Msa1387890:CDS
CTCACTCTTGGAACTGGGAA+AGG	0.507498	tig0020980:+96322	Msa1387890:CDS
TGATTGGAGTATGAAGGCTT+GGG	0.509209	tig0020980:-96132	None:intergenic
TTGGAAATGGAGTCCCATGC+TGG	0.515325	tig0020980:-96046	None:intergenic
CCCATGCTGGAATTGGTGTA+AGG	0.517184	tig0020980:-96033	None:intergenic
ATATGATGAGAGAAAGAAGA+AGG	0.521014	tig0020980:+95090	Msa1387890:CDS
GTGCCTGCATCATTGTTTAG+TGG	0.523421	tig0020980:-95857	None:intergenic
CTCTTTGTGCAGAAGCTGGT+TGG	0.523500	tig0020980:+95204	Msa1387890:CDS
ATGGAGATTGTGCAAAAGGA+TGG	0.524930	tig0020980:-96159	None:intergenic
CCTGCATCATTGTTTAGTGG+AGG	0.531453	tig0020980:-95854	None:intergenic
TTGTGCAGAAGCTGGTTGGT+CGG	0.532073	tig0020980:+95208	Msa1387890:CDS
CTAAGTTACCTTGCGATAGG+TGG	0.533179	tig0020980:-95246	None:intergenic
TTCTCTTTCTCCTTCCACGA+TGG	0.536162	tig0020980:-95065	None:intergenic
TGGGTTCGTTGGGCTAGCAG+GGG	0.542358	tig0020980:-96113	None:intergenic
ATTCTAAGTTACCTTGCGAT+AGG	0.550407	tig0020980:-95249	None:intergenic
TCGGAGGAAGCCATCGTGGA+AGG	0.554225	tig0020980:+95055	Msa1387890:CDS
TGGAACTCACTCTTGGAACT+GGG	0.557403	tig0020980:+96317	Msa1387890:CDS
TGAGGAGTGAATTGGTATGA+AGG	0.559547	tig0020980:-95938	None:intergenic
CACAGCATTGAAAGATGAAG+AGG	0.562677	tig0020980:-96194	None:intergenic
CACAAAGGAGGAAAAGGCTG+AGG	0.574609	tig0020980:-95956	None:intergenic
ATAACATCAAAGATATTCGA+TGG	0.589300	tig0020980:+95119	Msa1387890:CDS
GGGTAGAAGATGCAGCAAAA+GGG	0.593286	tig0020980:-96093	None:intergenic
CCTCCACTAAACAATGATGC+AGG	0.594195	tig0020980:+95854	Msa1387890:CDS
GCCTTACACCAATTCCAGCA+TGG	0.599458	tig0020980:+96032	Msa1387890:CDS
CCTTACACCAATTCCAGCAT+GGG	0.605296	tig0020980:+96033	Msa1387890:CDS
GGTTGGTCGGTCGAAGAAGA+CGG	0.613610	tig0020980:+95221	Msa1387890:CDS
AAAGATGGACAAATGGGACA+TGG	0.629842	tig0020980:-95902	None:intergenic
GATGTTGGTGAGTAGAGAGG+AGG	0.631246	tig0020980:-96004	None:intergenic
GAATTCGGAGGAAGCCATCG+TGG	0.640888	tig0020980:+95051	Msa1387890:CDS
AGACGGAACCACCTATCGCA+AGG	0.647720	tig0020980:+95238	Msa1387890:CDS
GCATTGAAAGATGAAGAGGT+TGG	0.651739	tig0020980:-96190	None:intergenic
TCGATGGACTTCGAGCTCAA+AGG	0.659335	tig0020980:+95135	Msa1387890:CDS
CTGTTTGATATCCACAAAGG+AGG	0.659720	tig0020980:-95968	None:intergenic
GCACTGTTTGATATCCACAA+AGG	0.716903	tig0020980:-95971	None:intergenic
GAAGCATTGTGACAACAACG+AGG	0.796257	tig0020980:+95172	Msa1387890:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TAATTACATATGAAAAGTAT+CGG	-	tig0020980:95401-95420	None:intergenic	15.0%
!!!	TAATTACATATGAAAAGTAT+CGG	-	tig0020980:95401-95420	None:intergenic	15.0%
!!	AAACTTCAACAAAAAGAATT+CGG	+	tig0020980:95036-95055	Msa1387890:CDS	20.0%
!!	TAGTATAAATGGATAGTTAT+AGG	-	tig0020980:95319-95338	None:intergenic	20.0%
!!	GAACAATAATGTAGTATAAA+TGG	-	tig0020980:95330-95349	None:intergenic	20.0%
!!!	AACATAATTATCTGATCTTT+TGG	+	tig0020980:95354-95373	Msa1387890:intron	20.0%
!!!	ATTGTTGTTTTTTGTGAATA+GGG	+	tig0020980:95824-95843	Msa1387890:intron	20.0%
!!	AAACTTCAACAAAAAGAATT+CGG	+	tig0020980:95036-95055	Msa1387890:CDS	20.0%
!!	TAGTATAAATGGATAGTTAT+AGG	-	tig0020980:95319-95338	None:intergenic	20.0%
!!	GAACAATAATGTAGTATAAA+TGG	-	tig0020980:95330-95349	None:intergenic	20.0%
!!!	AACATAATTATCTGATCTTT+TGG	+	tig0020980:95354-95373	Msa1387890:intron	20.0%
!!!	ATTGTTGTTTTTTGTGAATA+GGG	+	tig0020980:95824-95843	Msa1387890:intron	20.0%
!!	TTTTGTTGAAGTTTTTGTGT+CGG	-	tig0020980:95030-95049	None:intergenic	25.0%
!	ATCGAATATCTTTGATGTTA+TGG	-	tig0020980:95120-95139	None:intergenic	25.0%
!	ATAACATCAAAGATATTCGA+TGG	+	tig0020980:95119-95138	Msa1387890:CDS	25.0%
!!	ATCTGATGAATAAGATCTTT+TGG	-	tig0020980:95457-95476	None:intergenic	25.0%
!!!	ATACCAATTGATTTTCTTCA+TGG	-	tig0020980:95556-95575	None:intergenic	25.0%
!!!	ACATAGTTGTTTTGAACTAA+AGG	-	tig0020980:95643-95662	None:intergenic	25.0%
!!!	GATTGTTGTTTTTTGTGAAT+AGG	+	tig0020980:95823-95842	Msa1387890:intron	25.0%
!	TGATGAAAAAATTCATGATG+AGG	+	tig0020980:96282-96301	Msa1387890:CDS	25.0%
!	GATGAAAAAATTCATGATGA+GGG	+	tig0020980:96283-96302	Msa1387890:CDS	25.0%
!!	TTTTGTTGAAGTTTTTGTGT+CGG	-	tig0020980:95030-95049	None:intergenic	25.0%
!	ATCGAATATCTTTGATGTTA+TGG	-	tig0020980:95120-95139	None:intergenic	25.0%
!	ATAACATCAAAGATATTCGA+TGG	+	tig0020980:95119-95138	Msa1387890:CDS	25.0%
!!	ATCTGATGAATAAGATCTTT+TGG	-	tig0020980:95457-95476	None:intergenic	25.0%
!!!	ATACCAATTGATTTTCTTCA+TGG	-	tig0020980:95556-95575	None:intergenic	25.0%
!!!	ACATAGTTGTTTTGAACTAA+AGG	-	tig0020980:95643-95662	None:intergenic	25.0%
!!!	GATTGTTGTTTTTTGTGAAT+AGG	+	tig0020980:95823-95842	Msa1387890:intron	25.0%
!	TGATGAAAAAATTCATGATG+AGG	+	tig0020980:96282-96301	Msa1387890:CDS	25.0%
!	GATGAAAAAATTCATGATGA+GGG	+	tig0020980:96283-96302	Msa1387890:CDS	25.0%
	ATATGATGAGAGAAAGAAGA+AGG	+	tig0020980:95090-95109	Msa1387890:CDS	30.0%
	CAAGTAACAAAGAAACAAAG+AGG	-	tig0020980:95287-95306	None:intergenic	30.0%
	CTTCCATGAAGAAAATCAAT+TGG	+	tig0020980:95550-95569	Msa1387890:intron	30.0%
	AAAGGTTAAAGAAGTTGAAG+TGG	-	tig0020980:95625-95644	None:intergenic	30.0%
!	AATAGTGTGCATTTGAAATG+TGG	-	tig0020980:95700-95719	None:intergenic	30.0%
	ACTAATGTTGCAAATAAGGT+AGG	-	tig0020980:95750-95769	None:intergenic	30.0%
	GTACACTAATGTTGCAAATA+AGG	-	tig0020980:95754-95773	None:intergenic	30.0%
!!	ATTTTGGGAATAAGAGAAAG+AGG	-	tig0020980:95882-95901	None:intergenic	30.0%
	ATGACAAGTTCAAAAATGCT+TGG	+	tig0020980:96238-96257	Msa1387890:CDS	30.0%
	TGACAAGTTCAAAAATGCTT+GGG	+	tig0020980:96239-96258	Msa1387890:CDS	30.0%
!!!	TGAATTTTTTCATCAACCCA+AGG	-	tig0020980:96277-96296	None:intergenic	30.0%
	AAAAATTCATGATGAGGGAT+TGG	+	tig0020980:96288-96307	Msa1387890:CDS	30.0%
	ATATGATGAGAGAAAGAAGA+AGG	+	tig0020980:95090-95109	Msa1387890:CDS	30.0%
	CAAGTAACAAAGAAACAAAG+AGG	-	tig0020980:95287-95306	None:intergenic	30.0%
	CTTCCATGAAGAAAATCAAT+TGG	+	tig0020980:95550-95569	Msa1387890:intron	30.0%
	AAAGGTTAAAGAAGTTGAAG+TGG	-	tig0020980:95625-95644	None:intergenic	30.0%
!	AATAGTGTGCATTTGAAATG+TGG	-	tig0020980:95700-95719	None:intergenic	30.0%
	ACTAATGTTGCAAATAAGGT+AGG	-	tig0020980:95750-95769	None:intergenic	30.0%
	GTACACTAATGTTGCAAATA+AGG	-	tig0020980:95754-95773	None:intergenic	30.0%
!!	ATTTTGGGAATAAGAGAAAG+AGG	-	tig0020980:95882-95901	None:intergenic	30.0%
	ATGACAAGTTCAAAAATGCT+TGG	+	tig0020980:96238-96257	Msa1387890:CDS	30.0%
	TGACAAGTTCAAAAATGCTT+GGG	+	tig0020980:96239-96258	Msa1387890:CDS	30.0%
!!!	TGAATTTTTTCATCAACCCA+AGG	-	tig0020980:96277-96296	None:intergenic	30.0%
	AAAAATTCATGATGAGGGAT+TGG	+	tig0020980:96288-96307	Msa1387890:CDS	30.0%
	CTTCAACAAAAAGAATTCGG+AGG	+	tig0020980:95039-95058	Msa1387890:CDS	35.0%
	ATTCTAAGTTACCTTGCGAT+AGG	-	tig0020980:95252-95271	None:intergenic	35.0%
	AATTACACAAGCATGCATCA+AGG	-	tig0020980:95528-95547	None:intergenic	35.0%
!	ACAAATGGGACATGGATTTT+GGG	-	tig0020980:95897-95916	None:intergenic	35.0%
	GTTGGAAAAGATGGACAAAT+GGG	-	tig0020980:95911-95930	None:intergenic	35.0%
	AGTTGGAAAAGATGGACAAA+TGG	-	tig0020980:95912-95931	None:intergenic	35.0%
	GGAATTGAAGTTGGAAAAGA+TGG	-	tig0020980:95920-95939	None:intergenic	35.0%
	TGGTATGAAGGAATTGAAGT+TGG	-	tig0020980:95929-95948	None:intergenic	35.0%
	CTCCATTTCCAATGAATCTA+TGG	+	tig0020980:96057-96076	Msa1387890:CDS	35.0%
	TGCCATAGATTCATTGGAAA+TGG	-	tig0020980:96062-96081	None:intergenic	35.0%
	GGAAAATGCCATAGATTCAT+TGG	-	tig0020980:96068-96087	None:intergenic	35.0%
	GACAAGTTCAAAAATGCTTG+GGG	+	tig0020980:96240-96259	Msa1387890:CDS	35.0%
	CTTCAACAAAAAGAATTCGG+AGG	+	tig0020980:95039-95058	Msa1387890:CDS	35.0%
	ATTCTAAGTTACCTTGCGAT+AGG	-	tig0020980:95252-95271	None:intergenic	35.0%
	AATTACACAAGCATGCATCA+AGG	-	tig0020980:95528-95547	None:intergenic	35.0%
!	ACAAATGGGACATGGATTTT+GGG	-	tig0020980:95897-95916	None:intergenic	35.0%
	GTTGGAAAAGATGGACAAAT+GGG	-	tig0020980:95911-95930	None:intergenic	35.0%
	AGTTGGAAAAGATGGACAAA+TGG	-	tig0020980:95912-95931	None:intergenic	35.0%
	GGAATTGAAGTTGGAAAAGA+TGG	-	tig0020980:95920-95939	None:intergenic	35.0%
	TGGTATGAAGGAATTGAAGT+TGG	-	tig0020980:95929-95948	None:intergenic	35.0%
	CTCCATTTCCAATGAATCTA+TGG	+	tig0020980:96057-96076	Msa1387890:CDS	35.0%
	TGCCATAGATTCATTGGAAA+TGG	-	tig0020980:96062-96081	None:intergenic	35.0%
	GGAAAATGCCATAGATTCAT+TGG	-	tig0020980:96068-96087	None:intergenic	35.0%
	GACAAGTTCAAAAATGCTTG+GGG	+	tig0020980:96240-96259	Msa1387890:CDS	35.0%
!	GACAAATGGGACATGGATTT+TGG	-	tig0020980:95898-95917	None:intergenic	40.0%
	AAAGATGGACAAATGGGACA+TGG	-	tig0020980:95905-95924	None:intergenic	40.0%
	TGAGGAGTGAATTGGTATGA+AGG	-	tig0020980:95941-95960	None:intergenic	40.0%
	GATATCCACAAAGGAGGAAA+AGG	-	tig0020980:95965-95984	None:intergenic	40.0%
	CTGTTTGATATCCACAAAGG+AGG	-	tig0020980:95971-95990	None:intergenic	40.0%
	GCACTGTTTGATATCCACAA+AGG	-	tig0020980:95974-95993	None:intergenic	40.0%
!	ATTGATGTTGGTGAGTAGAG+AGG	-	tig0020980:96010-96029	None:intergenic	40.0%
	GGTGTAAGGCTTATTGATGT+TGG	-	tig0020980:96022-96041	None:intergenic	40.0%
	AGATGCAGCAAAAGGGTAAT+TGG	-	tig0020980:96089-96108	None:intergenic	40.0%
	TGATTGGAGTATGAAGGCTT+GGG	-	tig0020980:96135-96154	None:intergenic	40.0%
	TTGATTGGAGTATGAAGGCT+TGG	-	tig0020980:96136-96155	None:intergenic	40.0%
	GGAACTTGATTGGAGTATGA+AGG	-	tig0020980:96141-96160	None:intergenic	40.0%
	GCAAAAGGATGGAACTTGAT+TGG	-	tig0020980:96151-96170	None:intergenic	40.0%
	ATGGAGATTGTGCAAAAGGA+TGG	-	tig0020980:96162-96181	None:intergenic	40.0%
	GCAAATGGAGATTGTGCAAA+AGG	-	tig0020980:96166-96185	None:intergenic	40.0%
	GCATTGAAAGATGAAGAGGT+TGG	-	tig0020980:96193-96212	None:intergenic	40.0%
!	CACAGCATTGAAAGATGAAG+AGG	-	tig0020980:96197-96216	None:intergenic	40.0%
	CTCTTCATCTTTCAATGCTG+TGG	+	tig0020980:96195-96214	Msa1387890:CDS	40.0%
	TGATGAGGGATTGGATGATT+TGG	+	tig0020980:96297-96316	Msa1387890:CDS	40.0%
!	GATGATTTGGAACTCACTCT+TGG	+	tig0020980:96310-96329	Msa1387890:CDS	40.0%
!	GACAAATGGGACATGGATTT+TGG	-	tig0020980:95898-95917	None:intergenic	40.0%
	AAAGATGGACAAATGGGACA+TGG	-	tig0020980:95905-95924	None:intergenic	40.0%
	TGAGGAGTGAATTGGTATGA+AGG	-	tig0020980:95941-95960	None:intergenic	40.0%
	GATATCCACAAAGGAGGAAA+AGG	-	tig0020980:95965-95984	None:intergenic	40.0%
	CTGTTTGATATCCACAAAGG+AGG	-	tig0020980:95971-95990	None:intergenic	40.0%
	GCACTGTTTGATATCCACAA+AGG	-	tig0020980:95974-95993	None:intergenic	40.0%
!	ATTGATGTTGGTGAGTAGAG+AGG	-	tig0020980:96010-96029	None:intergenic	40.0%
	GGTGTAAGGCTTATTGATGT+TGG	-	tig0020980:96022-96041	None:intergenic	40.0%
	AGATGCAGCAAAAGGGTAAT+TGG	-	tig0020980:96089-96108	None:intergenic	40.0%
	TGATTGGAGTATGAAGGCTT+GGG	-	tig0020980:96135-96154	None:intergenic	40.0%
	TTGATTGGAGTATGAAGGCT+TGG	-	tig0020980:96136-96155	None:intergenic	40.0%
	GGAACTTGATTGGAGTATGA+AGG	-	tig0020980:96141-96160	None:intergenic	40.0%
	GCAAAAGGATGGAACTTGAT+TGG	-	tig0020980:96151-96170	None:intergenic	40.0%
	ATGGAGATTGTGCAAAAGGA+TGG	-	tig0020980:96162-96181	None:intergenic	40.0%
	GCAAATGGAGATTGTGCAAA+AGG	-	tig0020980:96166-96185	None:intergenic	40.0%
	GCATTGAAAGATGAAGAGGT+TGG	-	tig0020980:96193-96212	None:intergenic	40.0%
!	CACAGCATTGAAAGATGAAG+AGG	-	tig0020980:96197-96216	None:intergenic	40.0%
	CTCTTCATCTTTCAATGCTG+TGG	+	tig0020980:96195-96214	Msa1387890:CDS	40.0%
	TGATGAGGGATTGGATGATT+TGG	+	tig0020980:96297-96316	Msa1387890:CDS	40.0%
!	GATGATTTGGAACTCACTCT+TGG	+	tig0020980:96310-96329	Msa1387890:CDS	40.0%
	TTCTCTTTCTCCTTCCACGA+TGG	-	tig0020980:95068-95087	None:intergenic	45.0%
!!	GAAGCATTGTGACAACAACG+AGG	+	tig0020980:95172-95191	Msa1387890:CDS	45.0%
	CTTCTGCACAAAGAGCTTTG+AGG	-	tig0020980:95199-95218	None:intergenic	45.0%
	AAAGCTCTTTGTGCAGAAGC+TGG	+	tig0020980:95200-95219	Msa1387890:CDS	45.0%
	CTAAGTTACCTTGCGATAGG+TGG	-	tig0020980:95249-95268	None:intergenic	45.0%
	CCTGCATCATTGTTTAGTGG+AGG	-	tig0020980:95857-95876	None:intergenic	45.0%
	CCTCCACTAAACAATGATGC+AGG	+	tig0020980:95854-95873	Msa1387890:CDS	45.0%
	GTGCCTGCATCATTGTTTAG+TGG	-	tig0020980:95860-95879	None:intergenic	45.0%
	GAAAAGGCTGAGGAGTGAAT+TGG	-	tig0020980:95949-95968	None:intergenic	45.0%
	CCTTACACCAATTCCAGCAT+GGG	+	tig0020980:96033-96052	Msa1387890:CDS	45.0%
	GGGTAGAAGATGCAGCAAAA+GGG	-	tig0020980:96096-96115	None:intergenic	45.0%
	TATGAAGGCTTGGGTTCGTT+GGG	-	tig0020980:96126-96145	None:intergenic	45.0%
	TTGGAACTCACTCTTGGAAC+TGG	+	tig0020980:96316-96335	Msa1387890:CDS	45.0%
	TGGAACTCACTCTTGGAACT+GGG	+	tig0020980:96317-96336	Msa1387890:CDS	45.0%
	TTCTCTTTCTCCTTCCACGA+TGG	-	tig0020980:95068-95087	None:intergenic	45.0%
!!	GAAGCATTGTGACAACAACG+AGG	+	tig0020980:95172-95191	Msa1387890:CDS	45.0%
	CTTCTGCACAAAGAGCTTTG+AGG	-	tig0020980:95199-95218	None:intergenic	45.0%
	AAAGCTCTTTGTGCAGAAGC+TGG	+	tig0020980:95200-95219	Msa1387890:CDS	45.0%
	CTAAGTTACCTTGCGATAGG+TGG	-	tig0020980:95249-95268	None:intergenic	45.0%
	CCTGCATCATTGTTTAGTGG+AGG	-	tig0020980:95857-95876	None:intergenic	45.0%
	CCTCCACTAAACAATGATGC+AGG	+	tig0020980:95854-95873	Msa1387890:CDS	45.0%
	GTGCCTGCATCATTGTTTAG+TGG	-	tig0020980:95860-95879	None:intergenic	45.0%
	GAAAAGGCTGAGGAGTGAAT+TGG	-	tig0020980:95949-95968	None:intergenic	45.0%
	CCTTACACCAATTCCAGCAT+GGG	+	tig0020980:96033-96052	Msa1387890:CDS	45.0%
	GGGTAGAAGATGCAGCAAAA+GGG	-	tig0020980:96096-96115	None:intergenic	45.0%
	TATGAAGGCTTGGGTTCGTT+GGG	-	tig0020980:96126-96145	None:intergenic	45.0%
	TTGGAACTCACTCTTGGAAC+TGG	+	tig0020980:96316-96335	Msa1387890:CDS	45.0%
	TGGAACTCACTCTTGGAACT+GGG	+	tig0020980:96317-96336	Msa1387890:CDS	45.0%
!	TCGATGGACTTCGAGCTCAA+AGG	+	tig0020980:95135-95154	Msa1387890:CDS	50.0%
	CTCTTTGTGCAGAAGCTGGT+TGG	+	tig0020980:95204-95223	Msa1387890:CDS	50.0%
	TTGTGCAGAAGCTGGTTGGT+CGG	+	tig0020980:95208-95227	Msa1387890:CDS	50.0%
	CACAAAGGAGGAAAAGGCTG+AGG	-	tig0020980:95959-95978	None:intergenic	50.0%
!	CTCAGCCTTTTCCTCCTTTG+TGG	+	tig0020980:95957-95976	Msa1387890:CDS	50.0%
!	GAGTAGAGAGGAGGTGTAAC+AGG	-	tig0020980:95998-96017	None:intergenic	50.0%
!	GATGTTGGTGAGTAGAGAGG+AGG	-	tig0020980:96007-96026	None:intergenic	50.0%
	GCCTTACACCAATTCCAGCA+TGG	+	tig0020980:96032-96051	Msa1387890:CDS	50.0%
	CCCATGCTGGAATTGGTGTA+AGG	-	tig0020980:96036-96055	None:intergenic	50.0%
	ATGGAGTCCCATGCTGGAAT+TGG	-	tig0020980:96043-96062	None:intergenic	50.0%
	TTGGAAATGGAGTCCCATGC+TGG	-	tig0020980:96049-96068	None:intergenic	50.0%
	GGGGTAGAAGATGCAGCAAA+AGG	-	tig0020980:96097-96116	None:intergenic	50.0%
	GTATGAAGGCTTGGGTTCGT+TGG	-	tig0020980:96127-96146	None:intergenic	50.0%
	GAAGAGGTTGGCACTGCAAA+TGG	-	tig0020980:96181-96200	None:intergenic	50.0%
	TTGGGGTGCAAGTAAAGCCT+TGG	+	tig0020980:96257-96276	Msa1387890:CDS	50.0%
	TGGGGTGCAAGTAAAGCCTT+GGG	+	tig0020980:96258-96277	Msa1387890:CDS	50.0%
	CTCACTCTTGGAACTGGGAA+AGG	+	tig0020980:96322-96341	Msa1387890:CDS	50.0%
!	TCGATGGACTTCGAGCTCAA+AGG	+	tig0020980:95135-95154	Msa1387890:CDS	50.0%
	CTCTTTGTGCAGAAGCTGGT+TGG	+	tig0020980:95204-95223	Msa1387890:CDS	50.0%
	TTGTGCAGAAGCTGGTTGGT+CGG	+	tig0020980:95208-95227	Msa1387890:CDS	50.0%
	CACAAAGGAGGAAAAGGCTG+AGG	-	tig0020980:95959-95978	None:intergenic	50.0%
!	CTCAGCCTTTTCCTCCTTTG+TGG	+	tig0020980:95957-95976	Msa1387890:CDS	50.0%
!	GAGTAGAGAGGAGGTGTAAC+AGG	-	tig0020980:95998-96017	None:intergenic	50.0%
!	GATGTTGGTGAGTAGAGAGG+AGG	-	tig0020980:96007-96026	None:intergenic	50.0%
	GCCTTACACCAATTCCAGCA+TGG	+	tig0020980:96032-96051	Msa1387890:CDS	50.0%
	CCCATGCTGGAATTGGTGTA+AGG	-	tig0020980:96036-96055	None:intergenic	50.0%
	ATGGAGTCCCATGCTGGAAT+TGG	-	tig0020980:96043-96062	None:intergenic	50.0%
	TTGGAAATGGAGTCCCATGC+TGG	-	tig0020980:96049-96068	None:intergenic	50.0%
	GGGGTAGAAGATGCAGCAAA+AGG	-	tig0020980:96097-96116	None:intergenic	50.0%
	GTATGAAGGCTTGGGTTCGT+TGG	-	tig0020980:96127-96146	None:intergenic	50.0%
	GAAGAGGTTGGCACTGCAAA+TGG	-	tig0020980:96181-96200	None:intergenic	50.0%
	TTGGGGTGCAAGTAAAGCCT+TGG	+	tig0020980:96257-96276	Msa1387890:CDS	50.0%
	TGGGGTGCAAGTAAAGCCTT+GGG	+	tig0020980:96258-96277	Msa1387890:CDS	50.0%
	CTCACTCTTGGAACTGGGAA+AGG	+	tig0020980:96322-96341	Msa1387890:CDS	50.0%
	GAATTCGGAGGAAGCCATCG+TGG	+	tig0020980:95051-95070	Msa1387890:CDS	55.0%
!	GGTTGGTCGGTCGAAGAAGA+CGG	+	tig0020980:95221-95240	Msa1387890:CDS	55.0%
	AGACGGAACCACCTATCGCA+AGG	+	tig0020980:95238-95257	Msa1387890:CDS	55.0%
!!	TTGGGTTCGTTGGGCTAGCA+GGG	-	tig0020980:96117-96136	None:intergenic	55.0%
	GAATTCGGAGGAAGCCATCG+TGG	+	tig0020980:95051-95070	Msa1387890:CDS	55.0%
!	GGTTGGTCGGTCGAAGAAGA+CGG	+	tig0020980:95221-95240	Msa1387890:CDS	55.0%
	AGACGGAACCACCTATCGCA+AGG	+	tig0020980:95238-95257	Msa1387890:CDS	55.0%
!!	TTGGGTTCGTTGGGCTAGCA+GGG	-	tig0020980:96117-96136	None:intergenic	55.0%
	TCGGAGGAAGCCATCGTGGA+AGG	+	tig0020980:95055-95074	Msa1387890:CDS	60.0%
!!	TGGGTTCGTTGGGCTAGCAG+GGG	-	tig0020980:96116-96135	None:intergenic	60.0%
!!	CTTGGGTTCGTTGGGCTAGC+AGG	-	tig0020980:96118-96137	None:intergenic	60.0%
	TCGGAGGAAGCCATCGTGGA+AGG	+	tig0020980:95055-95074	Msa1387890:CDS	60.0%
!!	TGGGTTCGTTGGGCTAGCAG+GGG	-	tig0020980:96116-96135	None:intergenic	60.0%
!!	CTTGGGTTCGTTGGGCTAGC+AGG	-	tig0020980:96118-96137	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
tig0020980	gene	95020	96354	95020	ID=Msa1387890;Name=Msa1387890
tig0020980	mRNA	95020	96354	95020	ID=Msa1387890-mRNA-1;Parent=Msa1387890;Name=Msa1387890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|249
tig0020980	exon	95020	95259	95020	ID=Msa1387890-mRNA-1:exon:10857;Parent=Msa1387890-mRNA-1
tig0020980	exon	95845	96354	95845	ID=Msa1387890-mRNA-1:exon:10858;Parent=Msa1387890-mRNA-1
tig0020980	CDS	95020	95259	95020	ID=Msa1387890-mRNA-1:cds;Parent=Msa1387890-mRNA-1
tig0020980	CDS	95845	96354	95845	ID=Msa1387890-mRNA-1:cds;Parent=Msa1387890-mRNA-1

Gene Sequence

>Msa1387890

ATGGCTTCCGACACAAAAACTTCAACAAAAAGAATTCGGAGGAAGCCATCGTGGAAGGAGAAAGAGAAAAATATGATGAGAGAAAGAAGAAGGAGAGCCATAACATCAAAGATATTCGATGGACTTCGAGCTCAAAGGAGCTACAATTTATCGAAGCATTGTGACAACAACGAGGTCCTCAAAGCTCTTTGTGCAGAAGCTGGTTGGTCGGTCGAAGAAGACGGAACCACCTATCGCAAGGGTTACAATCCTCCACTAAACAATGATGCAGGCACCTCTTTCTCTTATTCCCAAAATCCATGTCCCATTTGTCCATCTTTTCCAACTTCAATTCCTTCATACCAATTCACTCCTCAGCCTTTTCCTCCTTTGTGGATATCAAACAGTGCTCCTGTTACACCTCCTCTCTACTCACCAACATCAATAAGCCTTACACCAATTCCAGCATGGGACTCCATTTCCAATGAATCTATGGCATTTTCCAATTACCCTTTTGCTGCATCTTCTACCCCTGCTAGCCCAACGAACCCAAGCCTTCATACTCCAATCAAGTTCCATCCTTTTGCACAATCTCCATTTGCAGTGCCAACCTCTTCATCTTTCAATGCTGTGGCTGATAACTCAATCAGTGAGATGACAAGTTCAAAAATGCTTGGGGTGCAAGTAAAGCCTTGGGTTGATGAAAAAATTCATGATGAGGGATTGGATGATTTGGAACTCACTCTTGGAACTGGGAAAGGAAAGATTTAG

Protein sequence

>Msa1387890

MASDTKTSTKRIRRKPSWKEKEKNMMRERRRRAITSKIFDGLRAQRSYNLSKHCDNNEVLKALCAEAGWSVEEDGTTYRKGYNPPLNNDAGTSFSYSQNPCPICPSFPTSIPSYQFTPQPFPPLWISNSAPVTPPLYSPTSISLTPIPAWDSISNESMAFSNYPFAASSTPASPTNPSLHTPIKFHPFAQSPFAVPTSSSFNAVADNSISEMTSSKMLGVQVKPWVDEKIHDEGLDDLELTLGTGKGKI*