AlfalfaGEDB | Msa1387980

M. sativa cultivar zhongmu-4 / Msa1387980

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1387980	XP_003611383.2	98.196	499	9	0	1	499	1	499	0.0	1022

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1387980	sp\|Q8W4H1\|GAT26_ARATH	50.291	515	210	13	1	476	1	508	2.80e-138	411

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1387980	G7JYK7	98.196	499	9	0	1	499	1	499	0.0	1022

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TFs/TRs:

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Gene ID	Type	Classification
Msa1387980	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1387980	MtrunA17_Chr4g0055611	65.537	531	134	7	1	485	1	528	0.0	650
Msa1387980	MtrunA17_Chr5g0399781	98.413	252	4	0	1	252	1	252	0.0	523
Msa1387980	MtrunA17_Chr5g0399791	95.200	250	12	0	250	499	5	254	2.78e-175	493

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1387980	AT4G17570.3	50.874	515	211	12	1	476	1	512	3.14e-144	424
Msa1387980	AT4G17570.1	50.291	515	210	13	1	476	1	508	2.85e-139	411
Msa1387980	AT4G17570.2	49.900	501	209	12	15	476	27	524	4.50e-132	393
Msa1387980	AT5G47140.1	48.065	491	217	11	1	476	1	468	4.31e-126	376

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Find 108 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTAACTAGAATTGA+AGG	0.479850	tig0021032:+16465	None:intergenic
AAACAGTAACTAGAATTGAA+GGG	0.626294	tig0021032:+16466	None:intergenic
AACCACTATAATGTAGTATC+TGG	0.362580	tig0021032:-14603	Msa1387980:CDS
AAGAAGTGAACTTGCTCAAA+CGG	0.458776	tig0021032:-14632	Msa1387980:CDS
AAGAATATGCGTCACTCATT+GGG	0.411487	tig0021032:+13346	None:intergenic
AAGTGTGAGCTTGCATCAGG+AGG	0.639748	tig0021032:+11862	None:intergenic
AATGGAAGAGAAAAGAGCAT+TGG	0.529613	tig0021032:+16527	None:intergenic
ACAGATGCTAGTGATCTAAC+AGG	0.476473	tig0021032:-14462	Msa1387980:intron
ACCAAATTGTGCGCAGCTTT+CGG	0.305747	tig0021032:+14488	None:intergenic
ACCTGCTCAGTCAGTGGTCT+GGG	0.368180	tig0021032:-13646	Msa1387980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGAGAAAAATCTGAGAAA+TGG	+	tig0021032:11545-11564	None:intergenic	30.0%
TAAGGACTAAAAAGAAAGGA+AGG	-	tig0021032:11666-11685	Msa1387980:three_prime_UTR	30.0%
TTCAATGGAAATGAGATAAG+GGG	-	tig0021032:12546-12565	Msa1387980:CDS	30.0%
GACAAAAATGAATCAAACTG+TGG	+	tig0021032:12591-12610	None:intergenic	30.0%
TACAATACTGATCACCTTAA+TGG	-	tig0021032:12793-12812	Msa1387980:CDS	30.0%
ATGTTCAATACTCTTAGACT+TGG	-	tig0021032:12919-12938	Msa1387980:intron	30.0%
ATCATACGTAACTGTTTAAG+TGG	-	tig0021032:13100-13119	Msa1387980:intron	30.0%
AACAAAGATGTATCTCAGAT+TGG	+	tig0021032:13226-13245	None:intergenic	30.0%
AACCACTATAATGTAGTATC+TGG	-	tig0021032:13485-13504	Msa1387980:CDS	30.0%
ATGTTAGCACAGTCAAAAAA+TGG	-	tig0021032:13728-13747	Msa1387980:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021032	gene	11478	16632	11478	ID=Msa1387980;Name=Msa1387980
tig0021032	mRNA	11478	16632	11478	ID=Msa1387980-mRNA-1;Parent=Msa1387980;Name=Msa1387980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=423\|1\|1\|1\|1\|1\|8\|215\|499
tig0021032	exon	11478	11961	11478	ID=Msa1387980-mRNA-1:exon:10967;Parent=Msa1387980-mRNA-1
tig0021032	exon	12269	12380	12269	ID=Msa1387980-mRNA-1:exon:10966;Parent=Msa1387980-mRNA-1
tig0021032	exon	12475	12658	12475	ID=Msa1387980-mRNA-1:exon:10965;Parent=Msa1387980-mRNA-1
tig0021032	exon	12793	12896	12793	ID=Msa1387980-mRNA-1:exon:10964;Parent=Msa1387980-mRNA-1
tig0021032	exon	13035	13107	13035	ID=Msa1387980-mRNA-1:exon:10963;Parent=Msa1387980-mRNA-1
tig0021032	exon	13324	13669	13324	ID=Msa1387980-mRNA-1:exon:10962;Parent=Msa1387980-mRNA-1
tig0021032	exon	14463	14834	14463	ID=Msa1387980-mRNA-1:exon:10961;Parent=Msa1387980-mRNA-1
tig0021032	exon	16170	16632	16170	ID=Msa1387980-mRNA-1:exon:10960;Parent=Msa1387980-mRNA-1
tig0021032	five_prime_UTR	16210	16632	16210	ID=Msa1387980-mRNA-1:five_prime_utr;Parent=Msa1387980-mRNA-1
tig0021032	CDS	16170	16209	16170	ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1
tig0021032	CDS	14463	14834	14463	ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1
tig0021032	CDS	13324	13669	13324	ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1
tig0021032	CDS	13035	13107	13035	ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1
tig0021032	CDS	12793	12896	12793	ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1
tig0021032	CDS	12475	12658	12475	ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1
tig0021032	CDS	12269	12380	12269	ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1
tig0021032	CDS	11693	11961	11693	ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1
tig0021032	three_prime_UTR	11478	11692	11478	ID=Msa1387980-mRNA-1:three_prime_utr;Parent=Msa1387980-mRNA-1

Gene Sequence

>Msa1387980

ATGGGTAAACAAGGACCTTGCCATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAATACTATGCAATGCATGTGGTTCGCGGTGGAGGACAAAGGGAACACTTGCAAATTACACACCTTTACATGCTCGGGCTGAAACTGATGATTTTGATGATCAAAGGGCTTCAAGGACGAAGAGCATATCGTTAAATAAGAACAAAGAAGTGAACTTGCTCAAACGGAAGCAGAACCACTATAATGTAGTATCTGGAGGACTTGCATCTGATTACAACCAGGGATTCCAAAAGGCTTTTGATGAAGATATGAGTAATCGATCAAGTTCAGGATCAGCATTGTCTAACTCCGAAAGCTGCGCACAATTTGGTGGCACAGATGCTAGTGATCTAACAGGACCTGCTCAGTCAGTGGTCTGGGATACCACTCCCACAGTGCCTTCAAAAAAGAGGACATGTGTTGGTCGTGCAAAGCAGCCATCTTCTGTTGAGAAGCTCACAAAAGATTTATGCACTATTCTTCATGAACAACAATCTTGTTTTTCTGAATCTTCTGATGGGGATCTTCTTTATGAAAGTGAAGCACCGATGGTCTCTGTCGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCTAGTTATGTAGCTCGCGACGAAGAGTCTGAGGCTAGCTCTCTTTCATTTGATAATGGACTATACCCAATGAGTGACGCATATTCTTATTCTGGCGCCGTTCTTAAAAGTGACAAGTCTCAGCTGGAAAGAGTACAAATCCTTGGAAATCATGATTCACCCTTGTGTTTAGTAGATTTAAATGATGTAGTAAACTATGAAGAATTTACGAGGAACTTGTCATATGAAGAGCAGCAACAATTATTGAAGTTTCTTCCTGTGGTTGATACTGCTAAACTTCCTGATGGCCTTAAGGTCATGTTCGGTAGCTCTCAATTCAAGGAGAACTTAACTAATTTTCAGCAGCTTCTTGCAAAAGGCGCCTTTGATATCTCTTTGCCGGATGTAAAACCTGAAGACTGCGAGACTTTGAAAAGATATGCACTAAATGAGTTGTCAAAGTCGAAATGGGTGGAACACTATCATAACAAGAGATGTAAAAGTAGGGCTGAAAAATCGGATGTTCCAGGATCTGCTGGTATAGCATCAACCAATGTTGCAAATGTGAAGAGAATGCGTGATAGCAGAAATCAGAACTTTCCAGAGATGAAGACAATAATGAGGAGCCCCAAAAGAATTATCACAAAGACTAGTTATAATCCAAAAAGCCTATTTCCTTTGCCTCCTGATGCAAGCTCACACTTGCTAGATTCTTTTAACTTTGTTGAGGAGAGTTCTGATCAAGATCTGCTGCTAGAAGTGCCTTCTAATAATTCTTTTCCGCAGGCAGAACTTCTGCACCCAACTTCATACTTTGGTGCTCAAGCCAGCACTAGTAGTAGCTCAGCATACTCACATTTTGTGAACCATTAA

Protein sequence

>Msa1387980

MGKQGPCHHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARAETDDFDDQRASRTKSISLNKNKEVNLLKRKQNHYNVVSGGLASDYNQGFQKAFDEDMSNRSSSGSALSNSESCAQFGGTDASDLTGPAQSVVWDTTPTVPSKKRTCVGRAKQPSSVEKLTKDLCTILHEQQSCFSESSDGDLLYESEAPMVSVEIGHGSVLIRHPSYVARDEESEASSLSFDNGLYPMSDAYSYSGAVLKSDKSQLERVQILGNHDSPLCLVDLNDVVNYEEFTRNLSYEEQQQLLKFLPVVDTAKLPDGLKVMFGSSQFKENLTNFQQLLAKGAFDISLPDVKPEDCETLKRYALNELSKSKWVEHYHNKRCKSRAEKSDVPGSAGIASTNVANVKRMRDSRNQNFPEMKTIMRSPKRIITKTSYNPKSLFPLPPDASSHLLDSFNFVEESSDQDLLLEVPSNNSFPQAELLHPTSYFGAQASTSSSSAYSHFVNH*