Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387980 | XP_003611383.2 | 98.196 | 499 | 9 | 0 | 1 | 499 | 1 | 499 | 0.0 | 1022 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387980 | sp|Q8W4H1|GAT26_ARATH | 50.291 | 515 | 210 | 13 | 1 | 476 | 1 | 508 | 2.80e-138 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387980 | G7JYK7 | 98.196 | 499 | 9 | 0 | 1 | 499 | 1 | 499 | 0.0 | 1022 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1387980 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387980 | MtrunA17_Chr4g0055611 | 65.537 | 531 | 134 | 7 | 1 | 485 | 1 | 528 | 0.0 | 650 |
| Msa1387980 | MtrunA17_Chr5g0399781 | 98.413 | 252 | 4 | 0 | 1 | 252 | 1 | 252 | 0.0 | 523 |
| Msa1387980 | MtrunA17_Chr5g0399791 | 95.200 | 250 | 12 | 0 | 250 | 499 | 5 | 254 | 2.78e-175 | 493 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387980 | AT4G17570.3 | 50.874 | 515 | 211 | 12 | 1 | 476 | 1 | 512 | 3.14e-144 | 424 |
| Msa1387980 | AT4G17570.1 | 50.291 | 515 | 210 | 13 | 1 | 476 | 1 | 508 | 2.85e-139 | 411 |
| Msa1387980 | AT4G17570.2 | 49.900 | 501 | 209 | 12 | 15 | 476 | 27 | 524 | 4.50e-132 | 393 |
| Msa1387980 | AT5G47140.1 | 48.065 | 491 | 217 | 11 | 1 | 476 | 1 | 468 | 4.31e-126 | 376 |
Find 108 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTAATGTGTTACTTAA+TGG | 0.115400 | tig0021032:+11677 | None:intergenic |
| AGTCTTTGTGATAATTCTTT+TGG | 0.201366 | tig0021032:+11915 | None:intergenic |
| ATTGCAATAATTAATTAAAA+TGG | 0.214291 | tig0021032:+16314 | None:intergenic |
| TATCTTCATCAAAAGCCTTT+TGG | 0.231803 | tig0021032:+14550 | None:intergenic |
| ATTCTGGCGCCGTTCTTAAA+AGG | 0.255555 | tig0021032:-13323 | Msa1387980:intron |
| GATTGTCAAGGATTTGAAAT+TGG | 0.267403 | tig0021032:-11569 | Msa1387980:three_prime_UTR |
| AGCTCTCTTTCATTTGATAA+TGG | 0.271694 | tig0021032:-13375 | Msa1387980:CDS |
| CGCCTTTGATATCTCTTTGC+CGG | 0.285823 | tig0021032:-12564 | Msa1387980:CDS |
| TTCAAAGTCTCGCAGTCTTC+AGG | 0.296864 | tig0021032:+12533 | None:intergenic |
| ACCAAATTGTGCGCAGCTTT+CGG | 0.305747 | tig0021032:+14488 | None:intergenic |
| AGTGACGCATATTCTTATTC+TGG | 0.322140 | tig0021032:-13339 | Msa1387980:CDS |
| CATCAGGAGGCAAAGGAAAT+AGG | 0.324121 | tig0021032:+11875 | None:intergenic |
| ATTGATGTATATGTTATAGA+TGG | 0.335555 | tig0021032:+16489 | None:intergenic |
| TCCGAAAGCTGCGCACAATT+TGG | 0.336033 | tig0021032:-14489 | Msa1387980:CDS |
| GACCTGCTCAGTCAGTGGTC+TGG | 0.355510 | tig0021032:-13647 | Msa1387980:CDS |
| AACCACTATAATGTAGTATC+TGG | 0.362580 | tig0021032:-14603 | Msa1387980:CDS |
| ACCTGCTCAGTCAGTGGTCT+GGG | 0.368180 | tig0021032:-13646 | Msa1387980:CDS |
| ATGAGTTGTCAAAGTCGAAA+TGG | 0.378385 | tig0021032:-12496 | Msa1387980:CDS |
| TAAGAATATGCGTCACTCAT+TGG | 0.378524 | tig0021032:+13345 | None:intergenic |
| TAGTTGTTTGTGCAGCCTTA+AGG | 0.391657 | tig0021032:-12651 | Msa1387980:intron |
| AGCAGAAATCAGAACTTTCC+AGG | 0.401146 | tig0021032:-12268 | Msa1387980:intron |
| AAGAATATGCGTCACTCATT+GGG | 0.411487 | tig0021032:+13346 | None:intergenic |
| TTGCATAGTATTGGCTTCTC+TGG | 0.427042 | tig0021032:+14786 | None:intergenic |
| GCACACCACTTTGGCGCAAT+GGG | 0.430676 | tig0021032:-14812 | Msa1387980:CDS |
| CCACATGCATTGCATAGTAT+TGG | 0.431658 | tig0021032:+14777 | None:intergenic |
| TAGCAAACCTAAAATATGAT+AGG | 0.432361 | tig0021032:+16350 | None:intergenic |
| ATGAGTAATCGATCAAGTTC+AGG | 0.432484 | tig0021032:-14528 | Msa1387980:CDS |
| CCGATGGTCTCTGTCGAGAT+AGG | 0.442024 | tig0021032:-13459 | Msa1387980:CDS |
| TTACACACCTTTACATGCTC+GGG | 0.442559 | tig0021032:-14721 | Msa1387980:CDS |
| CTGCACCCAACTTCATACTT+TGG | 0.442894 | tig0021032:-11748 | Msa1387980:CDS |
| GTCAAGGATTTGAAATTGGA+TGG | 0.445749 | tig0021032:-11565 | Msa1387980:three_prime_UTR |
| TTTCAGCAGCTTCTTGCAAA+AGG | 0.446745 | tig0021032:-12587 | Msa1387980:CDS |
| TCTCTTCACATTTGCAACAT+TGG | 0.446975 | tig0021032:+12300 | None:intergenic |
| CCATTAAGTAACACATTACA+AGG | 0.451212 | tig0021032:-11677 | Msa1387980:exon |
| ATGCATGTGGTTCGCGGTGG+AGG | 0.452122 | tig0021032:-14764 | Msa1387980:CDS |
| GTGAGCTTCTCAACAGAAGA+TGG | 0.452294 | tig0021032:+13567 | None:intergenic |
| AGCAAGTGTGAGCTTGCATC+AGG | 0.455435 | tig0021032:+11859 | None:intergenic |
| TGCAGCCTTAAGGTCATGTT+CGG | 0.457133 | tig0021032:-12641 | Msa1387980:intron |
| AAGAAGTGAACTTGCTCAAA+CGG | 0.458776 | tig0021032:-14632 | Msa1387980:CDS |
| ATTACACACCTTTACATGCT+CGG | 0.466186 | tig0021032:-14722 | Msa1387980:CDS |
| GGCACACCACTTTGGCGCAA+TGG | 0.466586 | tig0021032:-14813 | Msa1387980:CDS |
| TGCGGAAAAGAATTATTAGA+AGG | 0.469116 | tig0021032:+11781 | None:intergenic |
| CTGGAAAGAGTACAAATCCT+TGG | 0.472378 | tig0021032:-13072 | Msa1387980:CDS |
| TTGATGATCAAAGGGCTTCA+AGG | 0.472955 | tig0021032:-14683 | Msa1387980:CDS |
| GTTCGGTAGCTCTCAATTCA+AGG | 0.476255 | tig0021032:-12624 | Msa1387980:CDS |
| ACAGATGCTAGTGATCTAAC+AGG | 0.476473 | tig0021032:-14462 | Msa1387980:intron |
| AAAACAGTAACTAGAATTGA+AGG | 0.479850 | tig0021032:+16465 | None:intergenic |
| TGAGCACCAAAGTATGAAGT+TGG | 0.490384 | tig0021032:+11742 | None:intergenic |
| GAGTAGAATTCTAACCCATC+AGG | 0.493607 | tig0021032:+12778 | None:intergenic |
| TTGCAACAGGCACACCACTT+TGG | 0.494644 | tig0021032:-14821 | Msa1387980:intron |
| TGAGTTGTCAAAGTCGAAAT+GGG | 0.496810 | tig0021032:-12495 | Msa1387980:CDS |
| GATGCTATACCAGCAGATCC+TGG | 0.497891 | tig0021032:+12325 | None:intergenic |
| TCGGATGTTCCAGGATCTGC+TGG | 0.499260 | tig0021032:-12334 | Msa1387980:CDS |
| TTTCAGTGACAAGTCTCAGC+TGG | 0.499546 | tig0021032:-13091 | Msa1387980:intron |
| TGAGAAATGGTTGTGAAAAG+TGG | 0.500096 | tig0021032:+16559 | None:intergenic |
| CGATGCAGAGATGTAAAAGT+AGG | 0.503787 | tig0021032:-12366 | Msa1387980:intron |
| GACATGGAAGTGTTCTCATT+AGG | 0.509357 | tig0021032:-13437 | Msa1387980:CDS |
| ATGGTTGTGAAAAGTGGAAA+TGG | 0.516210 | tig0021032:+16565 | None:intergenic |
| CATAGTATTGGCTTCTCTGG+TGG | 0.517941 | tig0021032:+14789 | None:intergenic |
| AGCTACCGAACATGACCTTA+AGG | 0.523689 | tig0021032:+12636 | None:intergenic |
| CTCCAGATACTACATTATAG+TGG | 0.528306 | tig0021032:+14601 | None:intergenic |
| TTGATGTATATGTTATAGAT+GGG | 0.528977 | tig0021032:+16490 | None:intergenic |
| TGCTGAGCTACTACTAGTGC+TGG | 0.529471 | tig0021032:+11717 | None:intergenic |
| AATGGAAGAGAAAAGAGCAT+TGG | 0.529613 | tig0021032:+16527 | None:intergenic |
| ATTATTGAAGTTTCTTCCTG+TGG | 0.538673 | tig0021032:-12818 | Msa1387980:CDS |
| TTACAACCAGGGATTCCAAA+AGG | 0.539474 | tig0021032:-14565 | Msa1387980:CDS |
| GAGCACCAAAGTATGAAGTT+GGG | 0.542626 | tig0021032:+11743 | None:intergenic |
| TCGTCGCGAGCTACATAACT+AGG | 0.544739 | tig0021032:+13411 | None:intergenic |
| TTCTGAGACATGGGTAAACA+AGG | 0.546162 | tig0021032:-16196 | Msa1387980:exon |
| GTTTCAGCCCGAGCATGTAA+AGG | 0.551747 | tig0021032:+14714 | None:intergenic |
| GGTTCGCGGTGGAGGACAAA+GGG | 0.557202 | tig0021032:-14756 | Msa1387980:CDS |
| GATACTGCTAAACTTCCTGA+TGG | 0.560155 | tig0021032:-12793 | Msa1387980:CDS |
| TGGGAATTTGTACAATCCAA+TGG | 0.563198 | tig0021032:+16509 | None:intergenic |
| TCCCAGACCACTGACTGAGC+AGG | 0.563264 | tig0021032:+13645 | None:intergenic |
| TGGTTCGCGGTGGAGGACAA+AGG | 0.567138 | tig0021032:-14757 | Msa1387980:CDS |
| TTATGAAAGTGAAGCACCGA+TGG | 0.567218 | tig0021032:-13475 | Msa1387980:CDS |
| TTTACATCTTAAATATATGA+CGG | 0.567772 | tig0021032:-11632 | Msa1387980:three_prime_UTR |
| TTTAGGACCTGCTCAGTCAG+TGG | 0.572891 | tig0021032:-13652 | Msa1387980:intron |
| AGTTTAGCAGTATCAACCAC+AGG | 0.576633 | tig0021032:+12802 | None:intergenic |
| GAAAGCTGCGCACAATTTGG+TGG | 0.579311 | tig0021032:-14486 | Msa1387980:CDS |
| ATTTAAATCTACTAAACACA+AGG | 0.584031 | tig0021032:+13035 | None:intergenic |
| CAGAGATGAAGACAATAATG+AGG | 0.584067 | tig0021032:-11942 | Msa1387980:CDS |
| CACTTGTAACTCCACAGTGA+TGG | 0.587666 | tig0021032:+16167 | None:intergenic |
| GAGCTTGCATCAGGAGGCAA+AGG | 0.591960 | tig0021032:+11868 | None:intergenic |
| GATGCAGAGATGTAAAAGTA+GGG | 0.597722 | tig0021032:-12365 | Msa1387980:intron |
| GTCTCTGTCGAGATAGGACA+TGG | 0.606101 | tig0021032:-13453 | Msa1387980:CDS |
| ATACTGCTAAACTTCCTGAT+GGG | 0.607368 | tig0021032:-12792 | Msa1387980:intron |
| TATGCAATGCATGTGGTTCG+CGG | 0.611941 | tig0021032:-14770 | Msa1387980:CDS |
| GTAACTCCACAGTGATGGCA+AGG | 0.624432 | tig0021032:+16172 | None:intergenic |
| AAACAGTAACTAGAATTGAA+GGG | 0.626294 | tig0021032:+16466 | None:intergenic |
| AGATAGCATGAAATGAGAAG+CGG | 0.627497 | tig0021032:-11510 | Msa1387980:three_prime_UTR |
| CTTGCATCTGATTACAACCA+GGG | 0.633133 | tig0021032:-14576 | Msa1387980:CDS |
| CACTATAATGTAGTATCTGG+AGG | 0.635640 | tig0021032:-14600 | Msa1387980:CDS |
| AGGGTGAATCATGATTTCCA+AGG | 0.637136 | tig0021032:+13055 | None:intergenic |
| AAGTGTGAGCTTGCATCAGG+AGG | 0.639748 | tig0021032:+11862 | None:intergenic |
| ACTTGCATCTGATTACAACC+AGG | 0.649715 | tig0021032:-14577 | Msa1387980:CDS |
| GTTGTCAAAGTCGAAATGGG+TGG | 0.657876 | tig0021032:-12492 | Msa1387980:CDS |
| ATCCGGCAAAGAGATATCAA+AGG | 0.663680 | tig0021032:+12562 | None:intergenic |
| TTTAAATCTACTAAACACAA+GGG | 0.665625 | tig0021032:+13036 | None:intergenic |
| CCTATCTCGACAGAGACCAT+CGG | 0.673336 | tig0021032:+13459 | None:intergenic |
| CCAATACTATGCAATGCATG+TGG | 0.675078 | tig0021032:-14777 | Msa1387980:CDS |
| GGTGGCCCATTGCGCCAAAG+TGG | 0.675260 | tig0021032:+14807 | None:intergenic |
| GGGTGCAGAAGTTCTGCCTG+CGG | 0.683148 | tig0021032:+11763 | None:intergenic |
| GGTGGAACACTATCATAACA+AGG | 0.694043 | tig0021032:-12474 | Msa1387980:intron |
| GCAATGCATGTGGTTCGCGG+TGG | 0.695010 | tig0021032:-14767 | Msa1387980:CDS |
| CACATTACAAGGTTATACTG+TGG | 0.703410 | tig0021032:-11666 | Msa1387980:three_prime_UTR |
| CAAGGACCTTGCCATCACTG+TGG | 0.727560 | tig0021032:-16178 | Msa1387980:CDS |
| TAAACTATGAAGAATTTACG+AGG | 0.736561 | tig0021032:-12867 | Msa1387980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTATAAATATATAT+TGG | + | tig0021032:11960-11979 | None:intergenic | 0.0% |
| !! | ATTGCAATAATTAATTAAAA+TGG | + | tig0021032:11777-11796 | None:intergenic | 10.0% |
| !! | AATATAAACTAAGAAAAATT+AGG | - | tig0021032:12030-12049 | Msa1387980:intron | 10.0% |
| !!! | TGTTGTATAATTTTTTTTAA+AGG | + | tig0021032:15344-15363 | None:intergenic | 10.0% |
| !! | AAAAAAAAGGAGAATAAAAA+TGG | + | tig0021032:11816-11835 | None:intergenic | 15.0% |
| !!! | ATTTTTATTCTCCTTTTTTT+TGG | - | tig0021032:11815-11834 | Msa1387980:CDS | 15.0% |
| !!! | ATATTTTTTGACCAAAAAAA+AGG | + | tig0021032:11829-11848 | None:intergenic | 15.0% |
| !!! | TAAAATACATACTATTTTGA+AGG | + | tig0021032:13709-13728 | None:intergenic | 15.0% |
| !!! | TAAATTTGCTGATATTATTT+TGG | - | tig0021032:14927-14946 | Msa1387980:intron | 15.0% |
| !! | ATTTACAATAAAATGTTAGT+AGG | - | tig0021032:15130-15149 | Msa1387980:intron | 15.0% |
| !!! | AACATAATTGTTATTATGTT+TGG | - | tig0021032:15187-15206 | Msa1387980:intron | 15.0% |
| !! | TTTACATCTTAAATATATGA+CGG | - | tig0021032:16456-16475 | Msa1387980:five_prime_UTR | 15.0% |
| !! | AAAAAGATGTCTAAAAAATT+TGG | + | tig0021032:16610-16629 | None:intergenic | 15.0% |
| !! | TTGATGTATATGTTATAGAT+GGG | + | tig0021032:11601-11620 | None:intergenic | 20.0% |
| !! | ATTGATGTATATGTTATAGA+TGG | + | tig0021032:11602-11621 | None:intergenic | 20.0% |
| !!! | AGTTACTGTTTTTGTTTTTT+TGG | - | tig0021032:11634-11653 | Msa1387980:three_prime_UTR | 20.0% |
| !!! | TTTTTTTGGTGTTCTTTTTA+AGG | - | tig0021032:11648-11667 | Msa1387980:three_prime_UTR | 20.0% |
| !!! | TTTTTAAGGACTAAAAAGAA+AGG | - | tig0021032:11662-11681 | Msa1387980:three_prime_UTR | 20.0% |
| !! | AAGGAAAAAAAAACATTTCT+GGG | - | tig0021032:11685-11704 | Msa1387980:exon | 20.0% |
| !!! | AAAATTTTGCAGAAGAATAA+GGG | + | tig0021032:11864-11883 | None:intergenic | 20.0% |
| !! | ATTTATACAGATTCAAAAGT+AGG | - | tig0021032:12075-12094 | Msa1387980:intron | 20.0% |
| !! | CTTTATATTACATTGAAATG+CGG | - | tig0021032:12339-12358 | Msa1387980:CDS | 20.0% |
| !!! | TTCATGTATTCTTATTTCAA+TGG | - | tig0021032:12531-12550 | Msa1387980:CDS | 20.0% |
| !!! | ATTCATTTTTGTCTTCTAAA+AGG | - | tig0021032:12598-12617 | Msa1387980:CDS | 20.0% |
| !!! | CACAGATTTATAAAACTTTT+TGG | + | tig0021032:12755-12774 | None:intergenic | 20.0% |
| !! | AAGAAGATATTGATACAAAA+GGG | + | tig0021032:13042-13061 | None:intergenic | 20.0% |
| !! | AAAAAATGGATAGTGAAATA+AGG | - | tig0021032:13742-13761 | Msa1387980:intron | 20.0% |
| !! | AATGAAAAAAAGAATTGAAG+AGG | - | tig0021032:14105-14124 | Msa1387980:intron | 20.0% |
| !! | ACAAATCATATATGTAAACA+CGG | + | tig0021032:14271-14290 | None:intergenic | 20.0% |
| !! | TTTGTGAAAAAACAAAAGAT+AGG | + | tig0021032:14385-14404 | None:intergenic | 20.0% |
| !!! | ATTTATTGTTTGGTTGATTT+AGG | - | tig0021032:14419-14438 | Msa1387980:intron | 20.0% |
| !!! | CATATAAGAATCAACTTTTT+TGG | + | tig0021032:14858-14877 | None:intergenic | 20.0% |
| !! | TTTAAATCTACTAAACACAA+GGG | + | tig0021032:15055-15074 | None:intergenic | 20.0% |
| !! | ATTTAAATCTACTAAACACA+AGG | + | tig0021032:15056-15075 | None:intergenic | 20.0% |
| !!! | AATTGTTATTATGTTTGGTT+AGG | - | tig0021032:15192-15211 | Msa1387980:intron | 20.0% |
| !! | ATCATTGATGAATAAATCAA+TGG | + | tig0021032:15988-16007 | None:intergenic | 20.0% |
| ! | AAACAGTAACTAGAATTGAA+GGG | + | tig0021032:11625-11644 | None:intergenic | 25.0% |
| ! | AAAACAGTAACTAGAATTGA+AGG | + | tig0021032:11626-11645 | None:intergenic | 25.0% |
| ! | GAAGGAAAAAAAAACATTTC+TGG | - | tig0021032:11684-11703 | Msa1387980:exon | 25.0% |
| !! | AAAAACATTTCTGGGTATAT+TGG | - | tig0021032:11693-11712 | Msa1387980:CDS | 25.0% |
| !! | TTTGCAACCTATCATATTTT+AGG | - | tig0021032:11731-11750 | Msa1387980:CDS | 25.0% |
| ! | TAGCAAACCTAAAATATGAT+AGG | + | tig0021032:11741-11760 | None:intergenic | 25.0% |
| !! | AAATTTTGCAGAAGAATAAG+GGG | + | tig0021032:11863-11882 | None:intergenic | 25.0% |
| !! | CAAAATTTTGCAGAAGAATA+AGG | + | tig0021032:11865-11884 | None:intergenic | 25.0% |
| ! | ATGATGTTGTATTAAGCATT+TGG | - | tig0021032:12102-12121 | Msa1387980:intron | 25.0% |
| ! | AACTAACTGGAAAAAGATTA+AGG | - | tig0021032:12235-12254 | Msa1387980:intron | 25.0% |
| !!! | ATGGTTTAAATTTTTTGTCG+CGG | - | tig0021032:12297-12316 | Msa1387980:CDS | 25.0% |
| ! | CGCATTTCAATGTAATATAA+AGG | + | tig0021032:12341-12360 | None:intergenic | 25.0% |
| ! | CATTAACATTTAACAGTATC+AGG | + | tig0021032:12484-12503 | None:intergenic | 25.0% |
| ! | ATTTCAATGGAAATGAGATA+AGG | - | tig0021032:12544-12563 | Msa1387980:CDS | 25.0% |
| ! | TTTCAATGGAAATGAGATAA+GGG | - | tig0021032:12545-12564 | Msa1387980:CDS | 25.0% |
| ! | CAAGAAGATATTGATACAAA+AGG | + | tig0021032:13043-13062 | None:intergenic | 25.0% |
| !! | GAATATTGTTTGTTAGAACT+TGG | - | tig0021032:13192-13211 | Msa1387980:intron | 25.0% |
| !!! | TGATGATTTTGATGATCAAA+GGG | - | tig0021032:13397-13416 | Msa1387980:CDS | 25.0% |
| ! | TTCATAACTGATTAAAGCAT+TGG | - | tig0021032:13678-13697 | Msa1387980:intron | 25.0% |
| !! | TCATAACTGATTAAAGCATT+GGG | - | tig0021032:13679-13698 | Msa1387980:intron | 25.0% |
| !!! | ACATGTTCATAAGTTGTTTT+CGG | + | tig0021032:13950-13969 | None:intergenic | 25.0% |
| ! | TGTTAATTAGGTTTATCTCA+TGG | + | tig0021032:14026-14045 | None:intergenic | 25.0% |
| ! | AGCGTATTCAAATGTTAATT+AGG | + | tig0021032:14038-14057 | None:intergenic | 25.0% |
| !!! | ATTCTTTTTTTCATTGTCGA+TGG | + | tig0021032:14100-14119 | None:intergenic | 25.0% |
| ! | TATATCAACCACATTTATTG+CGG | - | tig0021032:14162-14181 | Msa1387980:intron | 25.0% |
| ! | TCATGAAAACATGTTATCTA+AGG | + | tig0021032:14238-14257 | None:intergenic | 25.0% |
| !!! | GTAAAGAATTTTTTGATCAG+AGG | + | tig0021032:14316-14335 | None:intergenic | 25.0% |
| !!! | TTATTTTTTTGCGTGTAACT+TGG | - | tig0021032:14885-14904 | Msa1387980:intron | 25.0% |
| ! | TAAACTATGAAGAATTTACG+AGG | - | tig0021032:15221-15240 | Msa1387980:intron | 25.0% |
| !! | ATCATACATGAGACTTTTTA+AGG | - | tig0021032:15373-15392 | Msa1387980:intron | 25.0% |
| !! | TCATACATGAGACTTTTTAA+GGG | - | tig0021032:15374-15393 | Msa1387980:intron | 25.0% |
| ! | TAACAAATCGTAAATCTTGA+TGG | + | tig0021032:15417-15436 | None:intergenic | 25.0% |
| ! | TATTAATTGTGCAACTTTGA+AGG | + | tig0021032:15919-15938 | None:intergenic | 25.0% |
| ! | ACAATGATTCATTATCTATG+CGG | - | tig0021032:15950-15969 | Msa1387980:intron | 25.0% |
| !! | TCTTTGTGATAATTCTTTTG+GGG | + | tig0021032:16174-16193 | None:intergenic | 25.0% |
| !! | GTCTTTGTGATAATTCTTTT+GGG | + | tig0021032:16175-16194 | None:intergenic | 25.0% |
| !! | AGTCTTTGTGATAATTCTTT+TGG | + | tig0021032:16176-16195 | None:intergenic | 25.0% |
| !!! | AGATTCTTTTAACTTTGTTG+AGG | - | tig0021032:16252-16271 | Msa1387980:five_prime_UTR | 25.0% |
| !!! | TGGATGGAATATTTTTGTAT+AGG | - | tig0021032:16539-16558 | Msa1387980:five_prime_UTR | 25.0% |
| !!! | TGGAATATTTTTGTATAGGT+TGG | - | tig0021032:16543-16562 | Msa1387980:five_prime_UTR | 25.0% |
| TTGGAGAAAAATCTGAGAAA+TGG | + | tig0021032:11545-11564 | None:intergenic | 30.0% | |
| TAAGGACTAAAAAGAAAGGA+AGG | - | tig0021032:11666-11685 | Msa1387980:three_prime_UTR | 30.0% | |
| !!! | TTGTTCATTTTTCTGAGACA+TGG | - | tig0021032:11882-11901 | Msa1387980:CDS | 30.0% |
| !!! | TGTTCATTTTTCTGAGACAT+GGG | - | tig0021032:11883-11902 | Msa1387980:CDS | 30.0% |
| !! | TTTTTGTTTCACTGTGTTTC+TGG | - | tig0021032:12171-12190 | Msa1387980:intron | 30.0% |
| ! | TTAAGGAGAGTTGATTGAAT+TGG | - | tig0021032:12252-12271 | Msa1387980:intron | 30.0% |
| ! | TTTGTTGCATTGATAGGAAA+TGG | - | tig0021032:12278-12297 | Msa1387980:CDS | 30.0% |
| ! | TCTTCGCATAGTTTAAAATC+CGG | + | tig0021032:12458-12477 | None:intergenic | 30.0% |
| TTCAATGGAAATGAGATAAG+GGG | - | tig0021032:12546-12565 | Msa1387980:CDS | 30.0% | |
| GACAAAAATGAATCAAACTG+TGG | + | tig0021032:12591-12610 | None:intergenic | 30.0% | |
| TACAATACTGATCACCTTAA+TGG | - | tig0021032:12793-12812 | Msa1387980:CDS | 30.0% | |
| ATGTTCAATACTCTTAGACT+TGG | - | tig0021032:12919-12938 | Msa1387980:intron | 30.0% | |
| ATCATACGTAACTGTTTAAG+TGG | - | tig0021032:13100-13119 | Msa1387980:intron | 30.0% | |
| ! | CTTTTATATGCTTTGCGATT+TGG | - | tig0021032:13153-13172 | Msa1387980:intron | 30.0% |
| ! | TATTGTTTGTTAGAACTTGG+CGG | - | tig0021032:13195-13214 | Msa1387980:intron | 30.0% |
| AACAAAGATGTATCTCAGAT+TGG | + | tig0021032:13226-13245 | None:intergenic | 30.0% | |
| !! | CTGATGATTTTGATGATCAA+AGG | - | tig0021032:13396-13415 | Msa1387980:CDS | 30.0% |
| AACCACTATAATGTAGTATC+TGG | - | tig0021032:13485-13504 | Msa1387980:CDS | 30.0% | |
| ! | TATCTTCATCAAAAGCCTTT+TGG | + | tig0021032:13541-13560 | None:intergenic | 30.0% |
| ATGTTAGCACAGTCAAAAAA+TGG | - | tig0021032:13728-13747 | Msa1387980:intron | 30.0% | |
| ! | ATATCTGAGTTTTGCTTCTA+GGG | - | tig0021032:13827-13846 | Msa1387980:intron | 30.0% |
| TTATATCAGTGTTTGGACTT+TGG | + | tig0021032:13994-14013 | None:intergenic | 30.0% | |
| TTGATATAACAAGAGCTTCA+TGG | + | tig0021032:14150-14169 | None:intergenic | 30.0% | |
| CATATATGTAAACACGGAAT+TGG | + | tig0021032:14265-14284 | None:intergenic | 30.0% | |
| TGTAATCTGTACATCAAAAC+TGG | - | tig0021032:14356-14375 | Msa1387980:intron | 30.0% | |
| ! | TGTTTTTCTGAATCTTCTGA+TGG | - | tig0021032:14581-14600 | Msa1387980:CDS | 30.0% |
| ! | GTTTTTCTGAATCTTCTGAT+GGG | - | tig0021032:14582-14601 | Msa1387980:CDS | 30.0% |
| ! | TTTTTCTGAATCTTCTGATG+GGG | - | tig0021032:14583-14602 | Msa1387980:CDS | 30.0% |
| AGCTCTCTTTCATTTGATAA+TGG | - | tig0021032:14713-14732 | Msa1387980:CDS | 30.0% | |
| TTCTTTCACTAGAATAAACG+TGG | - | tig0021032:14794-14813 | Msa1387980:CDS | 30.0% | |
| TATTCTCCTAGTTGAATTCT+TGG | - | tig0021032:15084-15103 | Msa1387980:intron | 30.0% | |
| ATTATTGAAGTTTCTTCCTG+TGG | - | tig0021032:15270-15289 | Msa1387980:intron | 30.0% | |
| !! | CATACATGAGACTTTTTAAG+GGG | - | tig0021032:15375-15394 | Msa1387980:intron | 30.0% |
| TAAAAGTAGGGCTGAAAAAT+CGG | - | tig0021032:15735-15754 | Msa1387980:intron | 30.0% | |
| ! | TTTAAGATTTAACGCTAACC+TGG | + | tig0021032:15841-15860 | None:intergenic | 30.0% |
| TATCATAAGACCTTCCAATT+AGG | - | tig0021032:15885-15904 | Msa1387980:intron | 30.0% | |
| TACTCCTTATGATTTAACTG+AGG | - | tig0021032:16093-16112 | Msa1387980:intron | 30.0% | |
| GATTCCTCAGTTAAATCATA+AGG | + | tig0021032:16100-16119 | None:intergenic | 30.0% | |
| TGCGGAAAAGAATTATTAGA+AGG | + | tig0021032:16310-16329 | None:intergenic | 30.0% | |
| ! | TTCTAATAATTCTTTTCCGC+AGG | - | tig0021032:16309-16328 | Msa1387980:five_prime_UTR | 30.0% |
| !! | CCTTGTAATGTGTTACTTAA+TGG | + | tig0021032:16414-16433 | None:intergenic | 30.0% |
| CCATTAAGTAACACATTACA+AGG | - | tig0021032:16411-16430 | Msa1387980:five_prime_UTR | 30.0% | |
| CAAAAAGAAGGTTGCAAATA+AGG | + | tig0021032:16492-16511 | None:intergenic | 30.0% | |
| ! | CTTATTTGCAACCTTCTTTT+TGG | - | tig0021032:16490-16509 | Msa1387980:five_prime_UTR | 30.0% |
| ! | GATTGTCAAGGATTTGAAAT+TGG | - | tig0021032:16519-16538 | Msa1387980:five_prime_UTR | 30.0% |
| ATGGTTGTGAAAAGTGGAAA+TGG | + | tig0021032:11526-11545 | None:intergenic | 35.0% | |
| TGAGAAATGGTTGTGAAAAG+TGG | + | tig0021032:11532-11551 | None:intergenic | 35.0% | |
| ! | AATGGAAGAGAAAAGAGCAT+TGG | + | tig0021032:11564-11583 | None:intergenic | 35.0% |
| ! | AATGCTCTTTTCTCTTCCAT+TGG | - | tig0021032:11563-11582 | Msa1387980:three_prime_UTR | 35.0% |
| TGGGAATTTGTACAATCCAA+TGG | + | tig0021032:11582-11601 | None:intergenic | 35.0% | |
| GCTTGTTCTGTGTAATACTA+TGG | - | tig0021032:12052-12071 | Msa1387980:intron | 35.0% | |
| ! | GCATTTGGAATTGAAAGTTG+TGG | - | tig0021032:12117-12136 | Msa1387980:intron | 35.0% |
| ! | TCTGAGACAATGTAACTAAC+TGG | - | tig0021032:12222-12241 | Msa1387980:intron | 35.0% |
| !! | TGGTGATTTGTTGCATTGAT+AGG | - | tig0021032:12272-12291 | Msa1387980:CDS | 35.0% |
| GAAATGAGATAAGGGGATTA+TGG | - | tig0021032:12553-12572 | Msa1387980:CDS | 35.0% | |
| ACAATTTCTCAATGTGTCAG+AGG | - | tig0021032:12656-12675 | Msa1387980:intron | 35.0% | |
| TTTCATTAGCCAGAAAGCAA+TGG | + | tig0021032:12725-12744 | None:intergenic | 35.0% | |
| TAGCAGAAGTAGTTCCATTA+AGG | + | tig0021032:12810-12829 | None:intergenic | 35.0% | |
| TAGTTCAATACTTGATTGCG+AGG | + | tig0021032:13067-13086 | None:intergenic | 35.0% | |
| !! | CGCAATCAAGTATTGAACTA+TGG | - | tig0021032:13067-13086 | Msa1387980:CDS | 35.0% |
| !! | TGTTTAAGTGGTTTGTTGTG+CGG | - | tig0021032:13112-13131 | Msa1387980:intron | 35.0% |
| ! | TGCTTTGCGATTTGGATTAT+CGG | - | tig0021032:13161-13180 | Msa1387980:intron | 35.0% |
| ATTACACACCTTTACATGCT+CGG | - | tig0021032:13366-13385 | Msa1387980:CDS | 35.0% | |
| ! | AAGAAGTGAACTTGCTCAAA+CGG | - | tig0021032:13456-13475 | Msa1387980:CDS | 35.0% |
| CTCCAGATACTACATTATAG+TGG | + | tig0021032:13490-13509 | None:intergenic | 35.0% | |
| CACTATAATGTAGTATCTGG+AGG | - | tig0021032:13488-13507 | Msa1387980:CDS | 35.0% | |
| ATGAGTAATCGATCAAGTTC+AGG | - | tig0021032:13560-13579 | Msa1387980:CDS | 35.0% | |
| ! | CAGGTTTGTTCTGATTTCAT+TGG | - | tig0021032:13645-13664 | Msa1387980:CDS | 35.0% |
| ! | AAGAAATTGTGCTGCTATTC+AGG | + | tig0021032:13783-13802 | None:intergenic | 35.0% |
| ! | GATATCTGAGTTTTGCTTCT+AGG | - | tig0021032:13826-13845 | Msa1387980:intron | 35.0% |
| CAAGCACTTATATCAGTGTT+TGG | + | tig0021032:14001-14020 | None:intergenic | 35.0% | |
| AGAACTTTCCGCAATAAATG+TGG | + | tig0021032:14173-14192 | None:intergenic | 35.0% | |
| !!! | ACACATGTCCTCTTTTTTGA+AGG | + | tig0021032:14485-14504 | None:intergenic | 35.0% |
| TCAAAAAAGAGGACATGTGT+TGG | - | tig0021032:14485-14504 | Msa1387980:CDS | 35.0% | |
| AAGAATATGCGTCACTCATT+GGG | + | tig0021032:14745-14764 | None:intergenic | 35.0% | |
| TAAGAATATGCGTCACTCAT+TGG | + | tig0021032:14746-14765 | None:intergenic | 35.0% | |
| AGTGACGCATATTCTTATTC+TGG | - | tig0021032:14749-14768 | Msa1387980:CDS | 35.0% | |
| !! | GAAAGCTTGCCTTTTAAGAA+CGG | + | tig0021032:14777-14796 | None:intergenic | 35.0% |
| ATACTGCTAAACTTCCTGAT+GGG | - | tig0021032:15296-15315 | Msa1387980:intron | 35.0% | |
| ATGAGTTGTCAAAGTCGAAA+TGG | - | tig0021032:15592-15611 | Msa1387980:intron | 35.0% | |
| TGAGTTGTCAAAGTCGAAAT+GGG | - | tig0021032:15593-15612 | Msa1387980:intron | 35.0% | |
| !! | CTACTTTTACATCTCTGCAT+CGG | + | tig0021032:15724-15743 | None:intergenic | 35.0% |
| GATGCAGAGATGTAAAAGTA+GGG | - | tig0021032:15723-15742 | Msa1387980:intron | 35.0% | |
| TCTCTTCACATTTGCAACAT+TGG | + | tig0021032:15791-15810 | None:intergenic | 35.0% | |
| TGAAGGAGTCATATCCTAAT+TGG | + | tig0021032:15902-15921 | None:intergenic | 35.0% | |
| CAGAGATGAAGACAATAATG+AGG | - | tig0021032:16146-16165 | Msa1387980:intron | 35.0% | |
| CACATTACAAGGTTATACTG+TGG | - | tig0021032:16422-16441 | Msa1387980:five_prime_UTR | 35.0% | |
| ! | GTCAAGGATTTGAAATTGGA+TGG | - | tig0021032:16523-16542 | Msa1387980:five_prime_UTR | 35.0% |
| AGATAGCATGAAATGAGAAG+CGG | - | tig0021032:16578-16597 | Msa1387980:five_prime_UTR | 35.0% | |
| !! | TTCTGAGACATGGGTAAACA+AGG | - | tig0021032:11892-11911 | Msa1387980:CDS | 40.0% |
| ! | TTTTTGTCGCGGTTGTGTTT+AGG | - | tig0021032:12308-12327 | Msa1387980:CDS | 40.0% |
| AACCGCAATTATGACAGCAT+CGG | + | tig0021032:12375-12394 | None:intergenic | 40.0% | |
| CAACTGCGAACGCAATATAA+CGG | + | tig0021032:12425-12444 | None:intergenic | 40.0% | |
| TTATATTGCGTTCGCAGTTG+TGG | - | tig0021032:12425-12444 | Msa1387980:intron | 40.0% | |
| ATGGAGCAAGACATGATTGA+GGG | + | tig0021032:12706-12725 | None:intergenic | 40.0% | |
| AATGGAGCAAGACATGATTG+AGG | + | tig0021032:12707-12726 | None:intergenic | 40.0% | |
| ! | GCAATCAATCTTTTCACCAC+AGG | - | tig0021032:12971-12990 | Msa1387980:intron | 40.0% |
| CTAAGAACATCTGTATCCTG+TGG | + | tig0021032:12990-13009 | None:intergenic | 40.0% | |
| ! | TGACAATTGAGCATTGCAAC+AGG | - | tig0021032:13254-13273 | Msa1387980:intron | 40.0% |
| !! | TTGCATAGTATTGGCTTCTC+TGG | + | tig0021032:13305-13324 | None:intergenic | 40.0% |
| CCACATGCATTGCATAGTAT+TGG | + | tig0021032:13314-13333 | None:intergenic | 40.0% | |
| CCAATACTATGCAATGCATG+TGG | - | tig0021032:13311-13330 | Msa1387980:intron | 40.0% | |
| TTACACACCTTTACATGCTC+GGG | - | tig0021032:13367-13386 | Msa1387980:CDS | 40.0% | |
| ! | TTGATGATCAAAGGGCTTCA+AGG | - | tig0021032:13405-13424 | Msa1387980:CDS | 40.0% |
| ACTTGCATCTGATTACAACC+AGG | - | tig0021032:13511-13530 | Msa1387980:CDS | 40.0% | |
| CTTGCATCTGATTACAACCA+GGG | - | tig0021032:13512-13531 | Msa1387980:CDS | 40.0% | |
| TTACAACCAGGGATTCCAAA+AGG | - | tig0021032:13523-13542 | Msa1387980:CDS | 40.0% | |
| ACAGATGCTAGTGATCTAAC+AGG | - | tig0021032:13626-13645 | Msa1387980:CDS | 40.0% | |
| AGTGCTCATTCGCTATTCTA+AGG | - | tig0021032:13875-13894 | Msa1387980:intron | 40.0% | |
| !!! | CTCTTTTTTGAAGGCACTGT+GGG | + | tig0021032:14476-14495 | None:intergenic | 40.0% |
| !! | TTATGAAAGTGAAGCACCGA+TGG | - | tig0021032:14613-14632 | Msa1387980:CDS | 40.0% |
| !! | GACATGGAAGTGTTCTCATT+AGG | - | tig0021032:14651-14670 | Msa1387980:CDS | 40.0% |
| ! | CTGGAAAGAGTACAAATCCT+TGG | - | tig0021032:15016-15035 | Msa1387980:intron | 40.0% |
| AGGGTGAATCATGATTTCCA+AGG | + | tig0021032:15036-15055 | None:intergenic | 40.0% | |
| CAACTGCCAAGAATTCAACT+AGG | + | tig0021032:15093-15112 | None:intergenic | 40.0% | |
| CTAGTTGAATTCTTGGCAGT+TGG | - | tig0021032:15091-15110 | Msa1387980:intron | 40.0% | |
| AGTTTAGCAGTATCAACCAC+AGG | + | tig0021032:15289-15308 | None:intergenic | 40.0% | |
| GATACTGCTAAACTTCCTGA+TGG | - | tig0021032:15295-15314 | Msa1387980:intron | 40.0% | |
| GAGTAGAATTCTAACCCATC+AGG | + | tig0021032:15313-15332 | None:intergenic | 40.0% | |
| TAGTTGTTTGTGCAGCCTTA+AGG | - | tig0021032:15437-15456 | Msa1387980:intron | 40.0% | |
| TTTCAGCAGCTTCTTGCAAA+AGG | - | tig0021032:15501-15520 | Msa1387980:intron | 40.0% | |
| ATCCGGCAAAGAGATATCAA+AGG | + | tig0021032:15529-15548 | None:intergenic | 40.0% | |
| !! | CAGTCTTCAGGTTTTACATC+CGG | + | tig0021032:15546-15565 | None:intergenic | 40.0% |
| GGTGGAACACTATCATAACA+AGG | - | tig0021032:15614-15633 | Msa1387980:intron | 40.0% | |
| CGATGCAGAGATGTAAAAGT+AGG | - | tig0021032:15722-15741 | Msa1387980:intron | 40.0% | |
| AGCAGAAATCAGAACTTTCC+AGG | - | tig0021032:15820-15839 | Msa1387980:intron | 40.0% | |
| GGAGTCATATCCTAATTGGA+AGG | + | tig0021032:15898-15917 | None:intergenic | 40.0% | |
| ! | GGCAAAGGAAATAGGCTTTT+TGG | + | tig0021032:16208-16227 | None:intergenic | 40.0% |
| GAGCACCAAAGTATGAAGTT+GGG | + | tig0021032:16348-16367 | None:intergenic | 40.0% | |
| TGAGCACCAAAGTATGAAGT+TGG | + | tig0021032:16349-16368 | None:intergenic | 40.0% | |
| CAATCCAAGCTCCAAAAAGA+AGG | + | tig0021032:16504-16523 | None:intergenic | 40.0% | |
| !!! | TTTTGGAGCTTGGATTGTCA+AGG | - | tig0021032:16507-16526 | Msa1387980:five_prime_UTR | 40.0% |
| CACTTGTAACTCCACAGTGA+TGG | + | tig0021032:11924-11943 | None:intergenic | 45.0% | |
| AGCCGATGCTGTCATAATTG+CGG | - | tig0021032:12370-12389 | Msa1387980:intron | 45.0% | |
| ! | TTGCGGTTGTGATGATGCTA+TGG | - | tig0021032:12387-12406 | Msa1387980:intron | 45.0% |
| CTCAATGTGTCAGAGGATCT+TGG | - | tig0021032:12663-12682 | Msa1387980:intron | 45.0% | |
| TGTCTTGCTCCATTGCTTTC+TGG | - | tig0021032:12713-12732 | Msa1387980:intron | 45.0% | |
| !! | CATAGTATTGGCTTCTCTGG+TGG | + | tig0021032:13302-13321 | None:intergenic | 45.0% |
| TATGCAATGCATGTGGTTCG+CGG | - | tig0021032:13318-13337 | Msa1387980:intron | 45.0% | |
| !!! | CAAAAGCCTTTTGGAATCCC+TGG | + | tig0021032:13532-13551 | None:intergenic | 45.0% |
| ACCAAATTGTGCGCAGCTTT+CGG | + | tig0021032:13603-13622 | None:intergenic | 45.0% | |
| !!! | CCTCTTTTTTGAAGGCACTG+TGG | + | tig0021032:14477-14496 | None:intergenic | 45.0% |
| CCACAGTGCCTTCAAAAAAG+AGG | - | tig0021032:14474-14493 | Msa1387980:CDS | 45.0% | |
| GTGAGCTTCTCAACAGAAGA+TGG | + | tig0021032:14524-14543 | None:intergenic | 45.0% | |
| ATTCTGGCGCCGTTCTTAAA+AGG | - | tig0021032:14765-14784 | Msa1387980:CDS | 45.0% | |
| AGAAGAGACAAAGTGCGATG+CGG | - | tig0021032:14950-14969 | Msa1387980:intron | 45.0% | |
| TTTCAGTGACAAGTCTCAGC+TGG | - | tig0021032:14997-15016 | Msa1387980:intron | 45.0% | |
| TGCAGCCTTAAGGTCATGTT+CGG | - | tig0021032:15447-15466 | Msa1387980:intron | 45.0% | |
| AGCTACCGAACATGACCTTA+AGG | + | tig0021032:15455-15474 | None:intergenic | 45.0% | |
| GTTCGGTAGCTCTCAATTCA+AGG | - | tig0021032:15464-15483 | Msa1387980:intron | 45.0% | |
| CGCCTTTGATATCTCTTTGC+CGG | - | tig0021032:15524-15543 | Msa1387980:intron | 45.0% | |
| TTCAAAGTCTCGCAGTCTTC+AGG | + | tig0021032:15558-15577 | None:intergenic | 45.0% | |
| GTTGTCAAAGTCGAAATGGG+TGG | - | tig0021032:15596-15615 | Msa1387980:intron | 45.0% | |
| ! | ACATCTCTGCATCGGTAGAA+GGG | + | tig0021032:15716-15735 | None:intergenic | 45.0% |
| ! | TACATCTCTGCATCGGTAGA+AGG | + | tig0021032:15717-15736 | None:intergenic | 45.0% |
| GCTGAAAAATCGGATGTTCC+AGG | - | tig0021032:15745-15764 | Msa1387980:intron | 45.0% | |
| CATCAGGAGGCAAAGGAAAT+AGG | + | tig0021032:16216-16235 | None:intergenic | 45.0% | |
| CTGCACCCAACTTCATACTT+TGG | - | tig0021032:16340-16359 | Msa1387980:five_prime_UTR | 45.0% | |
| !!! | GCAACCTTCTTTTTGGAGCT+TGG | - | tig0021032:16497-16516 | Msa1387980:five_prime_UTR | 45.0% |
| !!! | TTTAATTTTAATTTATTGTT+TGG | - | tig0021032:14409-14428 | Msa1387980:intron | 5.0% |
| GTAACTCCACAGTGATGGCA+AGG | + | tig0021032:11919-11938 | None:intergenic | 50.0% | |
| TTGCAACAGGCACACCACTT+TGG | - | tig0021032:13267-13286 | Msa1387980:intron | 50.0% | |
| GTTTCAGCCCGAGCATGTAA+AGG | + | tig0021032:13377-13396 | None:intergenic | 50.0% | |
| TCCGAAAGCTGCGCACAATT+TGG | - | tig0021032:13599-13618 | Msa1387980:CDS | 50.0% | |
| GAAAGCTGCGCACAATTTGG+TGG | - | tig0021032:13602-13621 | Msa1387980:CDS | 50.0% | |
| TGCGTGATTACATGGGCGTT+TGG | + | tig0021032:14064-14083 | None:intergenic | 50.0% | |
| AACGCCCATGTAATCACGCA+CGG | - | tig0021032:14064-14083 | Msa1387980:intron | 50.0% | |
| GATCCCGTGCGTGATTACAT+GGG | + | tig0021032:14071-14090 | None:intergenic | 50.0% | |
| AGATCCCGTGCGTGATTACA+TGG | + | tig0021032:14072-14091 | None:intergenic | 50.0% | |
| ! | TTTAGGACCTGCTCAGTCAG+TGG | - | tig0021032:14436-14455 | Msa1387980:intron | 50.0% |
| !!! | TTTTGAAGGCACTGTGGGAG+TGG | + | tig0021032:14471-14490 | None:intergenic | 50.0% |
| CCTATCTCGACAGAGACCAT+CGG | + | tig0021032:14632-14651 | None:intergenic | 50.0% | |
| GTCTCTGTCGAGATAGGACA+TGG | - | tig0021032:14635-14654 | Msa1387980:CDS | 50.0% | |
| TCGTCGCGAGCTACATAACT+AGG | + | tig0021032:14680-14699 | None:intergenic | 50.0% | |
| GATGCTATACCAGCAGATCC+TGG | + | tig0021032:15766-15785 | None:intergenic | 50.0% | |
| AAGTGTGAGCTTGCATCAGG+AGG | + | tig0021032:16229-16248 | None:intergenic | 50.0% | |
| AGCAAGTGTGAGCTTGCATC+AGG | + | tig0021032:16232-16251 | None:intergenic | 50.0% | |
| TGCTGAGCTACTACTAGTGC+TGG | + | tig0021032:16374-16393 | None:intergenic | 50.0% | |
| CAAGGACCTTGCCATCACTG+TGG | - | tig0021032:11910-11929 | Msa1387980:CDS | 55.0% | |
| TGCGTTCGCAGTTGTGGTTG+TGG | - | tig0021032:12431-12450 | Msa1387980:intron | 55.0% | |
| TCGCAGTTGTGGTTGTGGAC+CGG | - | tig0021032:12436-12455 | Msa1387980:intron | 55.0% | |
| GCACACCACTTTGGCGCAAT+GGG | - | tig0021032:13276-13295 | Msa1387980:intron | 55.0% | |
| ACGCCCATGTAATCACGCAC+GGG | - | tig0021032:14065-14084 | Msa1387980:intron | 55.0% | |
| ACCTGCTCAGTCAGTGGTCT+GGG | - | tig0021032:14442-14461 | Msa1387980:intron | 55.0% | |
| CCGATGGTCTCTGTCGAGAT+AGG | - | tig0021032:14629-14648 | Msa1387980:CDS | 55.0% | |
| TCGGATGTTCCAGGATCTGC+TGG | - | tig0021032:15754-15773 | Msa1387980:intron | 55.0% | |
| GAGCTTGCATCAGGAGGCAA+AGG | + | tig0021032:16223-16242 | None:intergenic | 55.0% | |
| GGCACACCACTTTGGCGCAA+TGG | - | tig0021032:13275-13294 | Msa1387980:intron | 60.0% | |
| GCAATGCATGTGGTTCGCGG+TGG | - | tig0021032:13321-13340 | Msa1387980:intron | 60.0% | |
| ATGCATGTGGTTCGCGGTGG+AGG | - | tig0021032:13324-13343 | Msa1387980:CDS | 60.0% | |
| TGGTTCGCGGTGGAGGACAA+AGG | - | tig0021032:13331-13350 | Msa1387980:CDS | 60.0% | |
| GGTTCGCGGTGGAGGACAAA+GGG | - | tig0021032:13332-13351 | Msa1387980:CDS | 60.0% | |
| GACCTGCTCAGTCAGTGGTC+TGG | - | tig0021032:14441-14460 | Msa1387980:intron | 60.0% | |
| ! | TCCCAGACCACTGACTGAGC+AGG | + | tig0021032:14446-14465 | None:intergenic | 60.0% |
| AGCTCGCGACGAAGAGTCTG+AGG | - | tig0021032:14688-14707 | Msa1387980:CDS | 60.0% | |
| GGGTGCAGAAGTTCTGCCTG+CGG | + | tig0021032:16328-16347 | None:intergenic | 60.0% | |
| GGTGGCCCATTGCGCCAAAG+TGG | + | tig0021032:13284-13303 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021032 | gene | 11478 | 16632 | 11478 | ID=Msa1387980;Name=Msa1387980 |
| tig0021032 | mRNA | 11478 | 16632 | 11478 | ID=Msa1387980-mRNA-1;Parent=Msa1387980;Name=Msa1387980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=423|1|1|1|1|1|8|215|499 |
| tig0021032 | exon | 11478 | 11961 | 11478 | ID=Msa1387980-mRNA-1:exon:10967;Parent=Msa1387980-mRNA-1 |
| tig0021032 | exon | 12269 | 12380 | 12269 | ID=Msa1387980-mRNA-1:exon:10966;Parent=Msa1387980-mRNA-1 |
| tig0021032 | exon | 12475 | 12658 | 12475 | ID=Msa1387980-mRNA-1:exon:10965;Parent=Msa1387980-mRNA-1 |
| tig0021032 | exon | 12793 | 12896 | 12793 | ID=Msa1387980-mRNA-1:exon:10964;Parent=Msa1387980-mRNA-1 |
| tig0021032 | exon | 13035 | 13107 | 13035 | ID=Msa1387980-mRNA-1:exon:10963;Parent=Msa1387980-mRNA-1 |
| tig0021032 | exon | 13324 | 13669 | 13324 | ID=Msa1387980-mRNA-1:exon:10962;Parent=Msa1387980-mRNA-1 |
| tig0021032 | exon | 14463 | 14834 | 14463 | ID=Msa1387980-mRNA-1:exon:10961;Parent=Msa1387980-mRNA-1 |
| tig0021032 | exon | 16170 | 16632 | 16170 | ID=Msa1387980-mRNA-1:exon:10960;Parent=Msa1387980-mRNA-1 |
| tig0021032 | five_prime_UTR | 16210 | 16632 | 16210 | ID=Msa1387980-mRNA-1:five_prime_utr;Parent=Msa1387980-mRNA-1 |
| tig0021032 | CDS | 16170 | 16209 | 16170 | ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1 |
| tig0021032 | CDS | 14463 | 14834 | 14463 | ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1 |
| tig0021032 | CDS | 13324 | 13669 | 13324 | ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1 |
| tig0021032 | CDS | 13035 | 13107 | 13035 | ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1 |
| tig0021032 | CDS | 12793 | 12896 | 12793 | ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1 |
| tig0021032 | CDS | 12475 | 12658 | 12475 | ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1 |
| tig0021032 | CDS | 12269 | 12380 | 12269 | ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1 |
| tig0021032 | CDS | 11693 | 11961 | 11693 | ID=Msa1387980-mRNA-1:cds;Parent=Msa1387980-mRNA-1 |
| tig0021032 | three_prime_UTR | 11478 | 11692 | 11478 | ID=Msa1387980-mRNA-1:three_prime_utr;Parent=Msa1387980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
