Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389710 | AES80711.1 | 63.723 | 419 | 129 | 12 | 40 | 448 | 27 | 432 | 5.23e-167 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389710 | G7KX87 | 63.723 | 419 | 129 | 12 | 40 | 448 | 27 | 432 | 2.50e-167 | 487 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1389710 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389710 | MtrunA17_Chr7g0252101 | 63.723 | 419 | 129 | 12 | 40 | 448 | 27 | 432 | 4.81e-171 | 487 |
| Msa1389710 | MtrunA17_Chr3g0093911 | 68.169 | 355 | 99 | 9 | 103 | 448 | 1 | 350 | 3.88e-156 | 446 |
| Msa1389710 | MtrunA17_Chr1g0207351 | 67.324 | 355 | 99 | 9 | 107 | 448 | 16 | 366 | 6.24e-152 | 436 |
| Msa1389710 | MtrunA17_Chr4g0075971 | 56.552 | 435 | 172 | 8 | 27 | 448 | 172 | 602 | 3.08e-148 | 435 |
| Msa1389710 | MtrunA17_Chr3g0077801 | 57.303 | 356 | 138 | 6 | 103 | 448 | 1 | 352 | 1.97e-129 | 378 |
| Msa1389710 | MtrunA17_Chr6g0488101 | 48.764 | 445 | 190 | 11 | 33 | 448 | 20 | 455 | 2.53e-127 | 376 |
| Msa1389710 | MtrunA17_Chr6g0488271 | 50.000 | 424 | 175 | 10 | 53 | 448 | 1 | 415 | 6.61e-127 | 374 |
| Msa1389710 | MtrunA17_Chr3g0077901 | 56.303 | 357 | 146 | 5 | 99 | 447 | 17 | 371 | 3.20e-124 | 365 |
| Msa1389710 | MtrunA17_Chr3g0077851 | 56.677 | 337 | 136 | 5 | 119 | 447 | 1 | 335 | 1.43e-117 | 347 |
| Msa1389710 | MtrunA17_Chr1g0209051 | 66.418 | 268 | 81 | 5 | 188 | 447 | 4 | 270 | 7.98e-117 | 343 |
| Msa1389710 | MtrunA17_Chr7g0243331 | 56.034 | 348 | 143 | 7 | 108 | 448 | 6 | 350 | 6.17e-114 | 338 |
| Msa1389710 | MtrunA17_Chr3g0112311 | 53.611 | 360 | 146 | 8 | 103 | 446 | 1 | 355 | 2.30e-111 | 332 |
| Msa1389710 | MtrunA17_Chr6g0452641 | 49.544 | 329 | 140 | 7 | 140 | 448 | 18 | 340 | 3.31e-85 | 264 |
| Msa1389710 | MtrunA17_Chr3g0122991 | 46.769 | 325 | 107 | 6 | 105 | 415 | 2 | 274 | 2.19e-82 | 255 |
| Msa1389710 | MtrunA17_Chr3g0123471 | 52.453 | 265 | 110 | 7 | 185 | 440 | 2 | 259 | 2.07e-77 | 241 |
| Msa1389710 | MtrunA17_Chr1g0202841 | 66.111 | 180 | 50 | 6 | 279 | 448 | 1 | 179 | 3.14e-69 | 218 |
| Msa1389710 | MtrunA17_Chr7g0243391 | 48.611 | 216 | 107 | 3 | 99 | 314 | 14 | 225 | 1.78e-55 | 184 |
| Msa1389710 | MtrunA17_Chr4g0075861 | 52.451 | 204 | 89 | 3 | 27 | 224 | 172 | 373 | 1.67e-52 | 181 |
| Msa1389710 | MtrunA17_Chr1g0196231 | 64.865 | 148 | 46 | 4 | 100 | 246 | 224 | 366 | 2.72e-49 | 172 |
| Msa1389710 | MtrunA17_Chr1g0187941 | 62.222 | 135 | 44 | 3 | 282 | 409 | 3 | 137 | 4.40e-45 | 153 |
| Msa1389710 | MtrunA17_Chr6g0486591 | 51.875 | 160 | 58 | 5 | 307 | 448 | 1 | 159 | 5.91e-42 | 146 |
| Msa1389710 | MtrunA17_Chr1g0206951 | 59.200 | 125 | 49 | 2 | 106 | 229 | 2 | 125 | 7.41e-40 | 139 |
| Msa1389710 | MtrunA17_Chr1g0209191 | 67.347 | 98 | 22 | 2 | 360 | 447 | 1 | 98 | 6.71e-37 | 130 |
| Msa1389710 | MtrunA17_Chr1g0196241 | 73.864 | 88 | 19 | 2 | 349 | 432 | 1 | 88 | 1.23e-34 | 124 |
| Msa1389710 | MtrunA17_Chr6g0459061 | 27.003 | 337 | 216 | 10 | 111 | 433 | 18 | 338 | 2.83e-26 | 109 |
| Msa1389710 | MtrunA17_Chr1g0209061 | 58.333 | 96 | 22 | 3 | 47 | 142 | 30 | 107 | 1.12e-25 | 100 |
| Msa1389710 | MtrunA17_Chr7g0238781 | 40.741 | 135 | 77 | 2 | 135 | 269 | 27 | 158 | 1.28e-23 | 96.7 |
| Msa1389710 | MtrunA17_Chr1g0206781 | 53.571 | 56 | 26 | 0 | 39 | 94 | 23 | 78 | 5.09e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 101 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTCTTTATTCTTGTAAA+TGG | 0.131332 | tig0021300:-5130 | None:intergenic |
| TCCTACTCCTGTCAAATTAT+TGG | 0.135605 | tig0021300:-5887 | None:intergenic |
| TATGAAATTTGAAGAATTAA+TGG | 0.141021 | tig0021300:-4950 | None:intergenic |
| CTCTCATATCCCCACCTATT+TGG | 0.159328 | tig0021300:-5643 | None:intergenic |
| CTGCCTCGTCATGGTAGTTC+TGG | 0.199501 | tig0021300:-3315 | None:intergenic |
| CCTTTATGTAGTGTTTATTC+AGG | 0.216363 | tig0021300:+5691 | Msa1389710:CDS |
| TACAAACACCTACGAGTTTC+AGG | 0.227738 | tig0021300:+199 | Msa1389710:CDS |
| TACAAACACCTACGAGTTTC+AGG | 0.227738 | tig0021300:+888 | Msa1389710:CDS |
| TTTGAAGAATTAATGGTTCT+TGG | 0.256322 | tig0021300:-4943 | None:intergenic |
| CAAATTATTGGCAAACAAAA+AGG | 0.284650 | tig0021300:-5875 | None:intergenic |
| CTCCAGTTTGACATAATTCA+TGG | 0.299341 | tig0021300:-5560 | None:intergenic |
| TCTCATATCCCCACCTATTT+GGG | 0.303333 | tig0021300:-5642 | None:intergenic |
| GAAGCCGAGTCTTATCATTA+TGG | 0.307560 | tig0021300:+5172 | Msa1389710:CDS |
| ATGCATTGAGCAACCCAAAT+AGG | 0.308917 | tig0021300:+5629 | Msa1389710:CDS |
| AATTTACTGGAGAAATTTCT+TGG | 0.311736 | tig0021300:+4916 | Msa1389710:CDS |
| ATTAATAGTTTGTTTACTTT+TGG | 0.313126 | tig0021300:+6062 | Msa1389710:three_prime_UTR |
| TGGATTACTTATTCGTCAAT+AGG | 0.317482 | tig0021300:+5301 | Msa1389710:CDS |
| GGTCCTTGAACTATTGTTGC+TGG | 0.325788 | tig0021300:+169 | None:intergenic |
| GGTCGACAAAATCTAGTGTT+TGG | 0.335860 | tig0021300:-4847 | None:intergenic |
| CCTAAGGGAAAATGTTTCAT+TGG | 0.345717 | tig0021300:-5455 | None:intergenic |
| GGGGAGGGTGGTTGACTTTG+TGG | 0.347817 | tig0021300:+5333 | Msa1389710:CDS |
| TTGAAGAATTAATGGTTCTT+GGG | 0.369399 | tig0021300:-4942 | None:intergenic |
| AACCATGAATTATGTCAAAC+TGG | 0.388496 | tig0021300:+5558 | Msa1389710:CDS |
| GGTCCTTGAACTATTGTTGT+TGG | 0.389825 | tig0021300:+858 | Msa1389710:intron |
| TGCCTCGTCATGGTAGTTCT+GGG | 0.393485 | tig0021300:-3314 | None:intergenic |
| AGAGAACCGTGAACTTCCTT+TGG | 0.394473 | tig0021300:+4805 | Msa1389710:CDS |
| ATTTAAGGTTCGACGAAGTA+AGG | 0.397434 | tig0021300:+5512 | Msa1389710:CDS |
| AGTTTGATTTGATGTTCCTT+TGG | 0.399942 | tig0021300:-3472 | None:intergenic |
| CAAGTTCCTTCATGTTGGAT+TGG | 0.401543 | tig0021300:+5761 | Msa1389710:CDS |
| TTATGTCAAACTGGAGACTT+TGG | 0.403683 | tig0021300:+5567 | Msa1389710:CDS |
| ACACACCGGCAAATTGAAAA+AGG | 0.404330 | tig0021300:-4868 | None:intergenic |
| CTCTGAGGAATTTATCTTGG+TGG | 0.409746 | tig0021300:+5225 | Msa1389710:CDS |
| GTTGTGATCTAAAGGGAAAA+AGG | 0.417556 | tig0021300:+4769 | Msa1389710:intron |
| TTGCCGGTGTGTGCAAGAAT+TGG | 0.418875 | tig0021300:+4879 | Msa1389710:CDS |
| TTCGTCAATAGGAAATGAAC+GGG | 0.420738 | tig0021300:+5312 | Msa1389710:CDS |
| ATGCTCTGAGGAATTTATCT+TGG | 0.430555 | tig0021300:+5222 | Msa1389710:CDS |
| CTAAGGGAAAATGTTTCATT+GGG | 0.435162 | tig0021300:-5454 | None:intergenic |
| CCTGAATAAACACTACATAA+AGG | 0.437679 | tig0021300:-5691 | None:intergenic |
| GTCGACAAAATCTAGTGTTT+GGG | 0.443544 | tig0021300:-4846 | None:intergenic |
| TGATTTGATGTTCCTTTGGC+AGG | 0.443659 | tig0021300:-3468 | None:intergenic |
| TGTGTATGAATTGAATATGT+TGG | 0.446075 | tig0021300:+6037 | Msa1389710:three_prime_UTR |
| TTGTTTGCCAATAATTTGAC+AGG | 0.461977 | tig0021300:+5880 | Msa1389710:three_prime_UTR |
| AAGGAACTTGCTCCTTGAGT+TGG | 0.466623 | tig0021300:-5748 | None:intergenic |
| ATGATAAGACTCGGCTTCAA+AGG | 0.473874 | tig0021300:-5167 | None:intergenic |
| CATCACAATTAACTAACCTA+AGG | 0.476886 | tig0021300:-5471 | None:intergenic |
| GAGTACCCCTATGTTGGCCT+TGG | 0.476948 | tig0021300:-5386 | None:intergenic |
| TATGTCAAACTGGAGACTTT+GGG | 0.481376 | tig0021300:+5568 | Msa1389710:CDS |
| CTTTATGTAGTGTTTATTCA+GGG | 0.488519 | tig0021300:+5692 | Msa1389710:CDS |
| TGATAAGACTCGGCTTCAAA+GGG | 0.489177 | tig0021300:-5166 | None:intergenic |
| TCCATTTACAAGAATAAAGA+AGG | 0.500617 | tig0021300:+5129 | Msa1389710:CDS |
| ATCAATCTCGAAATTGTGGT+TGG | 0.504810 | tig0021300:+5281 | Msa1389710:CDS |
| AGGAGCAAGTTCCTTCATGT+TGG | 0.509044 | tig0021300:+5756 | Msa1389710:CDS |
| AGAGTCAAGGAGCTGCTTGA+AGG | 0.509677 | tig0021300:+3412 | Msa1389710:CDS |
| TTGGTCGGGTAGGCTAATCA+AGG | 0.512881 | tig0021300:-4993 | None:intergenic |
| GCCAATAATTTGACAGGAGT+AGG | 0.513461 | tig0021300:+5886 | Msa1389710:three_prime_UTR |
| GAGCAACTCTATGTATGCAC+TGG | 0.514243 | tig0021300:+5663 | Msa1389710:CDS |
| GTCTATCAATCTCGAAATTG+TGG | 0.522717 | tig0021300:+5277 | Msa1389710:CDS |
| TTGATTACGCTTCCAACTCA+AGG | 0.533033 | tig0021300:+5736 | Msa1389710:CDS |
| AGGTGCTGCGGCAAGAGTCA+AGG | 0.534822 | tig0021300:+3399 | Msa1389710:CDS |
| TTGATGTTCCTTTGGCAGGA+AGG | 0.538933 | tig0021300:-3464 | None:intergenic |
| GAGTCAAGGAGCTGCTTGAA+GGG | 0.541631 | tig0021300:+3413 | Msa1389710:CDS |
| AAAAGTCCTAAAAGATGTGA+AGG | 0.543573 | tig0021300:+3357 | Msa1389710:CDS |
| ATGCCAGCAACAATAGTTCA+AGG | 0.545750 | tig0021300:-172 | None:intergenic |
| GTCACTACCAAGGCCAACAT+AGG | 0.547612 | tig0021300:+5379 | Msa1389710:CDS |
| TCACTACCAAGGCCAACATA+GGG | 0.550648 | tig0021300:+5380 | Msa1389710:CDS |
| CGAGGCAGTACAAGCTAATG+AGG | 0.552124 | tig0021300:+3330 | Msa1389710:CDS |
| ATGCCAACAACAATAGTTCA+AGG | 0.558169 | tig0021300:-861 | None:intergenic |
| GCACATCCAAAGGAAGTTCA+CGG | 0.562215 | tig0021300:-4811 | None:intergenic |
| GCCTCGTCATGGTAGTTCTG+GGG | 0.562928 | tig0021300:-3313 | None:intergenic |
| TTGCAACACTATGTTACTTG+TGG | 0.567630 | tig0021300:+5833 | Msa1389710:three_prime_UTR |
| CAAATCAAACTTGAGACCAC+TGG | 0.570634 | tig0021300:+3484 | Msa1389710:CDS |
| CAAGCTGAGTACCCCTATGT+TGG | 0.578511 | tig0021300:-5392 | None:intergenic |
| GCATTTGTCAAAAGCAAGCA+AGG | 0.584204 | tig0021300:-5203 | None:intergenic |
| TTTATGTAGTGTTTATTCAG+GGG | 0.586406 | tig0021300:+5693 | Msa1389710:CDS |
| CATTGAGCAACCCAAATAGG+TGG | 0.598653 | tig0021300:+5632 | Msa1389710:CDS |
| AAAACACCAATCCAACATGA+AGG | 0.599108 | tig0021300:-5767 | None:intergenic |
| ATCACAATTAACTAACCTAA+GGG | 0.600746 | tig0021300:-5470 | None:intergenic |
| ATTCGTCAATAGGAAATGAA+CGG | 0.603412 | tig0021300:+5311 | Msa1389710:CDS |
| GGAGTAGGAAAAGCTTGCAA+TGG | 0.606769 | tig0021300:+5901 | Msa1389710:three_prime_UTR |
| CCTCGTCATGGTAGTTCTGG+GGG | 0.607116 | tig0021300:-3312 | None:intergenic |
| ATGATATCAAGCACATCCAA+AGG | 0.608076 | tig0021300:-4821 | None:intergenic |
| AAACTCGTAGGTGTTTGTAA+TGG | 0.609218 | tig0021300:-195 | None:intergenic |
| AAACTCGTAGGTGTTTGTAA+TGG | 0.609218 | tig0021300:-884 | None:intergenic |
| ATTCAATACCTTCCTGCCAA+AGG | 0.612236 | tig0021300:+3456 | Msa1389710:CDS |
| ATTGAGCAACCCAAATAGGT+GGG | 0.612873 | tig0021300:+5633 | Msa1389710:CDS |
| GATCAAAGAATTTATACAAG+AGG | 0.613874 | tig0021300:+3379 | Msa1389710:CDS |
| TAGCTTGTACTGCCTCGTCA+TGG | 0.617598 | tig0021300:-3324 | None:intergenic |
| CGGTGTGTGCAAGAATTGGA+AGG | 0.623153 | tig0021300:+4883 | Msa1389710:CDS |
| CTTCCAATTCTTGCACACAC+CGG | 0.626272 | tig0021300:-4882 | None:intergenic |
| AATTTATACAAGAGGTGCTG+CGG | 0.636068 | tig0021300:+3387 | Msa1389710:CDS |
| AGCAACTCTATGTATGCACT+GGG | 0.636113 | tig0021300:+5664 | Msa1389710:CDS |
| ATCTATGCTACATCTTCTAG+CGG | 0.636928 | tig0021300:+5061 | Msa1389710:CDS |
| TTTAAGGACCTGAAACTCGT+AGG | 0.648785 | tig0021300:-207 | None:intergenic |
| AATATATGTTGTCACTACCA+AGG | 0.650134 | tig0021300:+5369 | Msa1389710:CDS |
| CACTACCAAGGCCAACATAG+GGG | 0.661007 | tig0021300:+5381 | Msa1389710:CDS |
| TTCAAGCACCTGAAACTCGT+AGG | 0.689749 | tig0021300:-896 | None:intergenic |
| TTGAGCAACCCAAATAGGTG+GGG | 0.691982 | tig0021300:+5634 | Msa1389710:CDS |
| ATTACCATAATGATAAGACT+CGG | 0.708713 | tig0021300:-5176 | None:intergenic |
| GATAAGACTCGGCTTCAAAG+GGG | 0.717149 | tig0021300:-5165 | None:intergenic |
| TCGTCAATAGGAAATGAACG+GGG | 0.727167 | tig0021300:+5313 | Msa1389710:CDS |
| CGTCAATAGGAAATGAACGG+GGG | 0.729159 | tig0021300:+5314 | Msa1389710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAATATTAAAACGAAA+AGG | - | tig0021300:356-375 | None:intergenic | 10.0% |
| !!! | GATTTTAATAATAATATTTC+AGG | + | tig0021300:389-408 | Msa1389710:intron | 10.0% |
| !! | AAACTAATAATTGAATAATA+TGG | - | tig0021300:571-590 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAACTATGAATAA+AGG | + | tig0021300:627-646 | Msa1389710:intron | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | + | tig0021300:1229-1248 | Msa1389710:intron | 10.0% |
| !! | ATTCATGTTAAATAAAATAT+TGG | - | tig0021300:1353-1372 | None:intergenic | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | + | tig0021300:1229-1248 | Msa1389710:intron | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | + | tig0021300:1229-1248 | Msa1389710:intron | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | + | tig0021300:1229-1248 | Msa1389710:intron | 10.0% |
| !!! | TTTAAAACCAATATTTAATT+TGG | + | tig0021300:2063-2082 | Msa1389710:intron | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | + | tig0021300:1229-1248 | Msa1389710:intron | 10.0% |
| !!! | TTTAAAACCAATATTTAATT+TGG | + | tig0021300:2063-2082 | Msa1389710:intron | 10.0% |
| !! | TATTAATTTAATAACGAATA+TGG | + | tig0021300:2564-2583 | Msa1389710:intron | 10.0% |
| !!! | TTAAAAATTTCCAATTTTAT+AGG | + | tig0021300:2872-2891 | Msa1389710:intron | 10.0% |
| !!! | TAAAAATTTCCAATTTTATA+GGG | + | tig0021300:2873-2892 | Msa1389710:intron | 10.0% |
| !! | TATTTCAGAAATAAATAAAA+AGG | + | tig0021300:4714-4733 | Msa1389710:intron | 10.0% |
| !! | AAAGGAAAAAAAAATAGTAT+AGG | - | tig0021300:278-297 | None:intergenic | 15.0% |
| !!! | TTATTAGTTTTTTAACATTG+AGG | + | tig0021300:581-600 | Msa1389710:intron | 15.0% |
| !! | AAGAGAAAAAAAAATAGTAT+AGG | - | tig0021300:967-986 | None:intergenic | 15.0% |
| !! | TTAATAATATTGAAACGAAA+AGG | - | tig0021300:1061-1080 | None:intergenic | 15.0% |
| !!! | GATTTTAAGAATAATATTTC+AGG | + | tig0021300:1094-1113 | Msa1389710:intron | 15.0% |
| !!! | TGGTGAAATAATAATATTTT+AGG | - | tig0021300:1121-1140 | None:intergenic | 15.0% |
| !! | TTATCATAAAATGATAGTAT+AGG | - | tig0021300:1168-1187 | None:intergenic | 15.0% |
| !!! | TATTGATTGATTTAGAAATA+AGG | - | tig0021300:1213-1232 | None:intergenic | 15.0% |
| !! | ATAAAAATAATGAATAAACG+TGG | - | tig0021300:2029-2048 | None:intergenic | 15.0% |
| !! | ATTTATGCCAAATTAAATAT+TGG | - | tig0021300:2073-2092 | None:intergenic | 15.0% |
| !! | TTTCTGTTACATAAAATATT+AGG | - | tig0021300:2155-2174 | None:intergenic | 15.0% |
| !! | ATAAAAATATTGAATAAACG+TGG | - | tig0021300:2283-2302 | None:intergenic | 15.0% |
| !! | ATTTATGCCAAATTAAATAT+TGG | - | tig0021300:2073-2092 | None:intergenic | 15.0% |
| !! | TCAAACAAAAATCATTAATT+AGG | + | tig0021300:2494-2513 | Msa1389710:intron | 15.0% |
| !! | TACATGAAATAATATATAAC+TGG | - | tig0021300:2524-2543 | None:intergenic | 15.0% |
| !! | AAATAAAATTTATCACAGAT+TGG | - | tig0021300:2761-2780 | None:intergenic | 15.0% |
| !! | TTGAAGATGAATAAAATAAA+GGG | - | tig0021300:2916-2935 | None:intergenic | 15.0% |
| !! | TTTGAAGATGAATAAAATAA+AGG | - | tig0021300:2917-2936 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTCTTTTCTTTTT+AGG | - | tig0021300:3071-3090 | None:intergenic | 15.0% |
| !!! | GTTTTATTATTCTGAATTAT+TGG | + | tig0021300:3244-3263 | Msa1389710:intron | 15.0% |
| !!! | TATATATAGATTACTTTTTC+CGG | - | tig0021300:3959-3978 | None:intergenic | 15.0% |
| !!! | TTATCATTTTTCTTTTTGTT+GGG | + | tig0021300:4428-4447 | Msa1389710:intron | 15.0% |
| !!! | AACTTAAAGCATTAAATATT+AGG | - | tig0021300:4479-4498 | None:intergenic | 15.0% |
| !! | TATGAAATTTGAAGAATTAA+TGG | - | tig0021300:4953-4972 | None:intergenic | 15.0% |
| !!! | ATTAATAGTTTGTTTACTTT+TGG | + | tig0021300:6062-6081 | Msa1389710:three_prime_UTR | 15.0% |
| !!! | GTATTATATATAGTTTGTTG+AGG | - | tig0021300:475-494 | None:intergenic | 20.0% |
| !! | TTTAACATTGAGGAAAAAAA+AGG | + | tig0021300:591-610 | Msa1389710:intron | 20.0% |
| !! | AGTAAAAGAAACAATAGTAT+AGG | - | tig0021300:750-769 | None:intergenic | 20.0% |
| !!! | TACTGATTGTTTTTTATTTC+AGG | + | tig0021300:837-856 | Msa1389710:intron | 20.0% |
| !! | TGAAACAGAAACAATATTAT+AGG | - | tig0021300:928-947 | None:intergenic | 20.0% |
| !! | AGTATATGTGATAATAGTAT+AGG | - | tig0021300:1026-1045 | None:intergenic | 20.0% |
| !!! | ATCACATATACTATTTTTTC+AGG | + | tig0021300:1034-1053 | Msa1389710:intron | 20.0% |
| !! | TAATAATATTAAAACGCTAC+TGG | - | tig0021300:999-1018 | None:intergenic | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | - | tig0021300:1277-1296 | None:intergenic | 20.0% |
| !! | TAAAATATTGAGAATGAATG+TGG | - | tig0021300:1538-1557 | None:intergenic | 20.0% |
| !! | AAAATATTGAGAATGAATGT+GGG | - | tig0021300:1276-1295 | None:intergenic | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | - | tig0021300:1277-1296 | None:intergenic | 20.0% |
| !!! | ATTGATGATTTATAGTTGAA+GGG | - | tig0021300:2202-2221 | None:intergenic | 20.0% |
| !! | GTTCTGTTACATAAAATATT+AGG | - | tig0021300:2408-2427 | None:intergenic | 20.0% |
| !! | ATTTACGAGTATTTATAACA+TGG | + | tig0021300:2688-2707 | Msa1389710:intron | 20.0% |
| !! | TTATTCATCTTCAAAAAGAT+AGG | + | tig0021300:2922-2941 | Msa1389710:intron | 20.0% |
| !!! | TCTTTTCTTTTTAGGATTTA+AGG | - | tig0021300:3063-3082 | None:intergenic | 20.0% |
| !!! | AAAAATCAATTATTCGAGTT+AGG | - | tig0021300:3214-3233 | None:intergenic | 20.0% |
| !! | TCAAAATAGTCTCTAAATTA+CGG | - | tig0021300:3593-3612 | None:intergenic | 20.0% |
| !!! | AGTTTTGCACAATTAATTTA+TGG | + | tig0021300:3616-3635 | Msa1389710:intron | 20.0% |
| !!! | TTTTTCATGTAATCAATTGA+TGG | + | tig0021300:3673-3692 | Msa1389710:intron | 20.0% |
| !!! | TTTTCATGTAATCAATTGAT+GGG | + | tig0021300:3674-3693 | Msa1389710:intron | 20.0% |
| !!! | TGAAAGACTATATTTTAATG+TGG | + | tig0021300:4030-4049 | Msa1389710:intron | 20.0% |
| !! | CAACAAAAAGAAAAATGATA+AGG | - | tig0021300:4429-4448 | None:intergenic | 20.0% |
| !!! | CTTATCATTTTTCTTTTTGT+TGG | + | tig0021300:4427-4446 | Msa1389710:intron | 20.0% |
| !!! | TATCATTTTTCTTTTTGTTG+GGG | + | tig0021300:4429-4448 | Msa1389710:intron | 20.0% |
| !! | TTCACATGAAGAAAAAAAAA+AGG | + | tig0021300:4576-4595 | Msa1389710:intron | 20.0% |
| !! | TGATAATATCATAGAAAATG+AGG | - | tig0021300:4676-4695 | None:intergenic | 20.0% |
| !!! | TCAAGCAATAATAAACTTTT+TGG | - | tig0021300:5015-5034 | None:intergenic | 20.0% |
| !!! | CAATTTTAGACAAAGTATTA+AGG | + | tig0021300:5934-5953 | Msa1389710:three_prime_UTR | 20.0% |
| !!! | GAAAGATTTTTTGTTTGTTT+TGG | + | tig0021300:5962-5981 | Msa1389710:three_prime_UTR | 20.0% |
| ! | TGAAACAGAAACAATAGTAT+AGG | - | tig0021300:239-258 | None:intergenic | 25.0% |
| !!! | ATCACCTATACTATTTTTTC+AGG | + | tig0021300:329-348 | Msa1389710:intron | 25.0% |
| ! | AAAAAGCTTAGATCAAAAGA+AGG | - | tig0021300:705-724 | None:intergenic | 25.0% |
| ! | ATAGTATAGGTCTTAATTCA+AGG | - | tig0021300:954-973 | None:intergenic | 25.0% |
| !! | GATTGATGATTTATAGTTGA+AGG | - | tig0021300:2203-2222 | None:intergenic | 25.0% |
| !! | TAATTTGTGAATACCTGATT+TGG | - | tig0021300:2470-2489 | None:intergenic | 25.0% |
| ! | CACATACAGATAAAATTAAC+TGG | - | tig0021300:2659-2678 | None:intergenic | 25.0% |
| ! | AATTTATCACAGATTGGTAT+AGG | - | tig0021300:2755-2774 | None:intergenic | 25.0% |
| !! | GTTTTTGTTCCCTATAAAAT+TGG | - | tig0021300:2885-2904 | None:intergenic | 25.0% |
| ! | GATAGGAAACAAATTTAGTT+TGG | + | tig0021300:2939-2958 | Msa1389710:intron | 25.0% |
| ! | GATCAAAGAATTTATACAAG+AGG | + | tig0021300:3379-3398 | Msa1389710:CDS | 25.0% |
| ! | AATGATAAATTACTAACCAG+TGG | - | tig0021300:3503-3522 | None:intergenic | 25.0% |
| ! | AACATAAGTCAAGATAACAA+GGG | - | tig0021300:3857-3876 | None:intergenic | 25.0% |
| ! | AAACATAAGTCAAGATAACA+AGG | - | tig0021300:3858-3877 | None:intergenic | 25.0% |
| !! | AAAGCATTAAATATTAGGCA+TGG | - | tig0021300:4474-4493 | None:intergenic | 25.0% |
| !!! | TGTTTGCTATACATTGAAAA+TGG | + | tig0021300:4541-4560 | Msa1389710:intron | 25.0% |
| !!! | GTTTGCTATACATTGAAAAT+GGG | + | tig0021300:4542-4561 | Msa1389710:intron | 25.0% |
| ! | TATACATTGAAAATGGGAAA+AGG | + | tig0021300:4548-4567 | Msa1389710:intron | 25.0% |
| ! | ATCACAACAATGACAAAATT+AGG | - | tig0021300:4757-4776 | None:intergenic | 25.0% |
| ! | AATTTACTGGAGAAATTTCT+TGG | + | tig0021300:4916-4935 | Msa1389710:CDS | 25.0% |
| ! | TTGAAGAATTAATGGTTCTT+GGG | - | tig0021300:4945-4964 | None:intergenic | 25.0% |
| ! | TTTGAAGAATTAATGGTTCT+TGG | - | tig0021300:4946-4965 | None:intergenic | 25.0% |
| !!! | CAATAATAAACTTTTTGGTC+GGG | - | tig0021300:5010-5029 | None:intergenic | 25.0% |
| !!! | GCAATAATAAACTTTTTGGT+CGG | - | tig0021300:5011-5030 | None:intergenic | 25.0% |
| ! | TCCATTTACAAGAATAAAGA+AGG | + | tig0021300:5129-5148 | Msa1389710:CDS | 25.0% |
| ! | ACCTTCTTTATTCTTGTAAA+TGG | - | tig0021300:5133-5152 | None:intergenic | 25.0% |
| ! | ATTACCATAATGATAAGACT+CGG | - | tig0021300:5179-5198 | None:intergenic | 25.0% |
| ! | ATCACAATTAACTAACCTAA+GGG | - | tig0021300:5473-5492 | None:intergenic | 25.0% |
| !!! | AACTTTTAGTGGTTGATTTA+AGG | + | tig0021300:5497-5516 | Msa1389710:CDS | 25.0% |
| !!! | CATTGCATTATTTTATGCTT+TGG | + | tig0021300:5594-5613 | Msa1389710:CDS | 25.0% |
| ! | CTTTATGTAGTGTTTATTCA+GGG | + | tig0021300:5692-5711 | Msa1389710:CDS | 25.0% |
| ! | TTTATGTAGTGTTTATTCAG+GGG | + | tig0021300:5693-5712 | Msa1389710:CDS | 25.0% |
| !! | TTTTAGACATCTACAATATG+AGG | + | tig0021300:5786-5805 | Msa1389710:CDS | 25.0% |
| ! | CAAATTATTGGCAAACAAAA+AGG | - | tig0021300:5878-5897 | None:intergenic | 25.0% |
| !!! | TTTTGTTTGTTTTGGAAACA+AGG | + | tig0021300:5970-5989 | Msa1389710:three_prime_UTR | 25.0% |
| ! | TGTGTATGAATTGAATATGT+TGG | + | tig0021300:6037-6056 | Msa1389710:three_prime_UTR | 25.0% |
| !! | ATAGTATAGGTGTTGGTTTA+AGG | - | tig0021300:226-245 | None:intergenic | 30.0% |
| AGAAACAATAGTATAGGTGT+TGG | - | tig0021300:233-252 | None:intergenic | 30.0% | |
| ATAGTATAGGTGTTAGTTCA+AGG | - | tig0021300:265-284 | None:intergenic | 30.0% | |
| AGGACCTGAAAAAATAGTAT+AGG | - | tig0021300:336-355 | None:intergenic | 30.0% | |
| !!! | TATAGTTTGTTGAGGCATTT+TGG | - | tig0021300:467-486 | None:intergenic | 30.0% |
| ATTGAGGAAAAAAAAGGCTT+CGG | + | tig0021300:597-616 | Msa1389710:intron | 30.0% | |
| !! | TCTAAGCTTTTTCTTTCTTC+AGG | + | tig0021300:713-732 | Msa1389710:intron | 30.0% |
| AACACCTATGATATCATTTC+AGG | + | tig0021300:1186-1205 | Msa1389710:intron | 30.0% | |
| ! | AACTTTTGATCTTATGCACT+CGG | + | tig0021300:1382-1401 | Msa1389710:intron | 30.0% |
| ! | TGATTTGGAGTATAGATGAA+GGG | - | tig0021300:2455-2474 | None:intergenic | 30.0% |
| ACTTAACTAGTGTATTTACC+CGG | - | tig0021300:2841-2860 | None:intergenic | 30.0% | |
| AAAAGTCCTAAAAGATGTGA+AGG | + | tig0021300:3357-3376 | Msa1389710:CDS | 30.0% | |
| ! | TTTGATCCTTCACATCTTTT+AGG | - | tig0021300:3366-3385 | None:intergenic | 30.0% |
| !! | AGTTTGATTTGATGTTCCTT+TGG | - | tig0021300:3475-3494 | None:intergenic | 30.0% |
| !! | ATGTAATCAATTGATGGGTT+TGG | + | tig0021300:3679-3698 | Msa1389710:intron | 30.0% |
| ATTAAGCTCAATGAAATCCT+AGG | - | tig0021300:4234-4253 | None:intergenic | 30.0% | |
| GAAAAAAAAATCAAGCACAG+CGG | - | tig0021300:4273-4292 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCTCAGACGATTGT+AGG | + | tig0021300:4347-4366 | Msa1389710:intron | 30.0% |
| !!! | TTTTTTCTCAGACGATTGTA+GGG | + | tig0021300:4348-4367 | Msa1389710:intron | 30.0% |
| ATGATAAGGATTAAAGACGT+AGG | - | tig0021300:4415-4434 | None:intergenic | 30.0% | |
| !!! | TTAGAGTGTTATTTTCCATG+AGG | + | tig0021300:4497-4516 | Msa1389710:intron | 30.0% |
| ! | GATATCTATTTTCATCCTCA+TGG | - | tig0021300:4515-4534 | None:intergenic | 30.0% |
| AGATGTTTGTTTGGCAAAAA+TGG | + | tig0021300:4629-4648 | Msa1389710:intron | 30.0% | |
| TTGTCATTGTTGTGATCTAA+AGG | + | tig0021300:4761-4780 | Msa1389710:intron | 30.0% | |
| TGTCATTGTTGTGATCTAAA+GGG | + | tig0021300:4762-4781 | Msa1389710:intron | 30.0% | |
| !! | TTCTAGCGGATATTTTATCA+TGG | + | tig0021300:5075-5094 | Msa1389710:CDS | 30.0% |
| TGGATTACTTATTCGTCAAT+AGG | + | tig0021300:5301-5320 | Msa1389710:CDS | 30.0% | |
| ATTCGTCAATAGGAAATGAA+CGG | + | tig0021300:5311-5330 | Msa1389710:CDS | 30.0% | |
| AATATATGTTGTCACTACCA+AGG | + | tig0021300:5369-5388 | Msa1389710:CDS | 30.0% | |
| CTAAGGGAAAATGTTTCATT+GGG | - | tig0021300:5457-5476 | None:intergenic | 30.0% | |
| CATCACAATTAACTAACCTA+AGG | - | tig0021300:5474-5493 | None:intergenic | 30.0% | |
| AACCATGAATTATGTCAAAC+TGG | + | tig0021300:5558-5577 | Msa1389710:CDS | 30.0% | |
| CCTGAATAAACACTACATAA+AGG | - | tig0021300:5694-5713 | None:intergenic | 30.0% | |
| CCTTTATGTAGTGTTTATTC+AGG | + | tig0021300:5691-5710 | Msa1389710:CDS | 30.0% | |
| TTGGCAAACAAAAAGGAAAT+AGG | - | tig0021300:5871-5890 | None:intergenic | 30.0% | |
| TTGTTTGCCAATAATTTGAC+AGG | + | tig0021300:5880-5899 | Msa1389710:three_prime_UTR | 30.0% | |
| AAACTCGTAGGTGTTTGTAA+TGG | - | tig0021300:198-217 | None:intergenic | 35.0% | |
| CAATCAGTAAATTCACTCGT+AGG | - | tig0021300:826-845 | None:intergenic | 35.0% | |
| ATGCCAACAACAATAGTTCA+AGG | - | tig0021300:864-883 | None:intergenic | 35.0% | |
| AAACTCGTAGGTGTTTGTAA+TGG | - | tig0021300:198-217 | None:intergenic | 35.0% | |
| AGGACCTGAAATGATATCAT+AGG | - | tig0021300:1193-1212 | None:intergenic | 35.0% | |
| !! | CTGATTTGGAGTATAGATGA+AGG | - | tig0021300:2456-2475 | None:intergenic | 35.0% |
| CTTCATCTATACTCCAAATC+AGG | + | tig0021300:2454-2473 | Msa1389710:intron | 35.0% | |
| CTTCTTGAATATGTCTAACC+CGG | + | tig0021300:2809-2828 | Msa1389710:intron | 35.0% | |
| TTCTTGAATATGTCTAACCC+GGG | + | tig0021300:2810-2829 | Msa1389710:intron | 35.0% | |
| AAAGCTTCCCTTCAGAATTA+GGG | + | tig0021300:3117-3136 | Msa1389710:intron | 35.0% | |
| TTGTGAACCCTAATTCTGAA+GGG | - | tig0021300:3127-3146 | None:intergenic | 35.0% | |
| ATTGTGAACCCTAATTCTGA+AGG | - | tig0021300:3128-3147 | None:intergenic | 35.0% | |
| !! | AATTTATACAAGAGGTGCTG+CGG | + | tig0021300:3387-3406 | Msa1389710:CDS | 35.0% |
| AGTCTCTAAATTACGGCATA+TGG | - | tig0021300:3586-3605 | None:intergenic | 35.0% | |
| ! | TGGGTTTGGAGTATTATAAC+AGG | + | tig0021300:3693-3712 | Msa1389710:intron | 35.0% |
| ! | GGGTTTGGAGTATTATAACA+GGG | + | tig0021300:3694-3713 | Msa1389710:intron | 35.0% |
| ! | GGTTTGGAGTATTATAACAG+GGG | + | tig0021300:3695-3714 | Msa1389710:intron | 35.0% |
| GAGTATTATAACAGGGGTTA+GGG | + | tig0021300:3701-3720 | Msa1389710:intron | 35.0% | |
| AGTATTATAACAGGGGTTAG+GGG | + | tig0021300:3702-3721 | Msa1389710:intron | 35.0% | |
| ! | TAGGGGTTCATGCAATTTTA+TGG | + | tig0021300:3719-3738 | Msa1389710:intron | 35.0% |
| AAATAGAGTCCTAGATAGTG+TGG | - | tig0021300:3892-3911 | None:intergenic | 35.0% | |
| ! | ATTTTGTCGCTCTATTTAGC+CGG | + | tig0021300:3937-3956 | Msa1389710:intron | 35.0% |
| ACTACTACAGTTGCAATCAA+CGG | - | tig0021300:4003-4022 | None:intergenic | 35.0% | |
| CTGAAGAACACACTAATTGT+TGG | - | tig0021300:4165-4184 | None:intergenic | 35.0% | |
| GTGTTCTTCAGTAACAAAAG+TGG | + | tig0021300:4174-4193 | Msa1389710:intron | 35.0% | |
| TCAGTAACAAAAGTGGAAAG+TGG | + | tig0021300:4181-4200 | Msa1389710:intron | 35.0% | |
| AACAAAAGTGGAAAGTGGAA+AGG | + | tig0021300:4186-4205 | Msa1389710:intron | 35.0% | |
| ! | CTATTAGTTCTTCACTACCT+AGG | + | tig0021300:4214-4233 | Msa1389710:intron | 35.0% |
| ! | TTTTTCTCAGACGATTGTAG+GGG | + | tig0021300:4349-4368 | Msa1389710:intron | 35.0% |
| TAGGAAACTGTCAATTAGTG+AGG | - | tig0021300:4396-4415 | None:intergenic | 35.0% | |
| ! | TTTTCTTTTTGTTGGGGAGT+AGG | + | tig0021300:4435-4454 | Msa1389710:intron | 35.0% |
| ! | TTTCTTTTTGTTGGGGAGTA+GGG | + | tig0021300:4436-4455 | Msa1389710:intron | 35.0% |
| ! | TGCTGTTCTAGATGTTTGTT+TGG | + | tig0021300:4620-4639 | Msa1389710:intron | 35.0% |
| GTTGTGATCTAAAGGGAAAA+AGG | + | tig0021300:4769-4788 | Msa1389710:intron | 35.0% | |
| TAAAGGGAAAAAGGTGAAGA+AGG | + | tig0021300:4778-4797 | Msa1389710:intron | 35.0% | |
| ATGATATCAAGCACATCCAA+AGG | - | tig0021300:4824-4843 | None:intergenic | 35.0% | |
| GTCGACAAAATCTAGTGTTT+GGG | - | tig0021300:4849-4868 | None:intergenic | 35.0% | |
| ! | AGGCTTTTCAGACAATTTAC+TGG | + | tig0021300:4903-4922 | Msa1389710:CDS | 35.0% |
| !! | AATAAACTTTTTGGTCGGGT+AGG | - | tig0021300:5006-5025 | None:intergenic | 35.0% |
| ATCTATGCTACATCTTCTAG+CGG | + | tig0021300:5061-5080 | Msa1389710:CDS | 35.0% | |
| !! | TAGCGGATATTTTATCATGG+TGG | + | tig0021300:5078-5097 | Msa1389710:CDS | 35.0% |
| ! | AGCGGATATTTTATCATGGT+GGG | + | tig0021300:5079-5098 | Msa1389710:CDS | 35.0% |
| !! | ATGCTCTGAGGAATTTATCT+TGG | + | tig0021300:5222-5241 | Msa1389710:CDS | 35.0% |
| !!! | TGGTTTTTTGCTGCTATCTT+TGG | + | tig0021300:5245-5264 | Msa1389710:CDS | 35.0% |
| GTCTATCAATCTCGAAATTG+TGG | + | tig0021300:5277-5296 | Msa1389710:CDS | 35.0% | |
| ATCAATCTCGAAATTGTGGT+TGG | + | tig0021300:5281-5300 | Msa1389710:CDS | 35.0% | |
| TTCGTCAATAGGAAATGAAC+GGG | + | tig0021300:5312-5331 | Msa1389710:CDS | 35.0% | |
| CCTAAGGGAAAATGTTTCAT+TGG | - | tig0021300:5458-5477 | None:intergenic | 35.0% | |
| ! | CCAATGAAACATTTTCCCTT+AGG | + | tig0021300:5455-5474 | Msa1389710:CDS | 35.0% |
| ! | TTGTGATGAGCAACTTTTAG+TGG | + | tig0021300:5486-5505 | Msa1389710:CDS | 35.0% |
| ! | ATTTAAGGTTCGACGAAGTA+AGG | + | tig0021300:5512-5531 | Msa1389710:CDS | 35.0% |
| CTCCAGTTTGACATAATTCA+TGG | - | tig0021300:5563-5582 | None:intergenic | 35.0% | |
| TTATGTCAAACTGGAGACTT+TGG | + | tig0021300:5567-5586 | Msa1389710:CDS | 35.0% | |
| TATGTCAAACTGGAGACTTT+GGG | + | tig0021300:5568-5587 | Msa1389710:CDS | 35.0% | |
| AAAACACCAATCCAACATGA+AGG | - | tig0021300:5770-5789 | None:intergenic | 35.0% | |
| ! | TTGCAACACTATGTTACTTG+TGG | + | tig0021300:5833-5852 | Msa1389710:three_prime_UTR | 35.0% |
| TCCTACTCCTGTCAAATTAT+TGG | - | tig0021300:5890-5909 | None:intergenic | 35.0% | |
| ATGCCAGCAACAATAGTTCA+AGG | - | tig0021300:175-194 | None:intergenic | 40.0% | |
| TACAAACACCTACGAGTTTC+AGG | + | tig0021300:199-218 | Msa1389710:CDS | 40.0% | |
| TTTAAGGACCTGAAACTCGT+AGG | - | tig0021300:210-229 | None:intergenic | 40.0% | |
| ACGCTGTTGTTGAAACGAAA+AGG | - | tig0021300:296-315 | None:intergenic | 40.0% | |
| GGTCCTTGAACTATTGTTGT+TGG | + | tig0021300:858-877 | Msa1389710:intron | 40.0% | |
| TACAAACACCTACGAGTTTC+AGG | + | tig0021300:199-218 | Msa1389710:CDS | 40.0% | |
| ATTGAGAATGAATGTGGGAG+TGG | - | tig0021300:1764-1783 | None:intergenic | 40.0% | |
| CAAAGCTTCCCTTCAGAATT+AGG | + | tig0021300:3116-3135 | Msa1389710:intron | 40.0% | |
| TCACAATCTTTATCCCTCTG+TGG | + | tig0021300:3141-3160 | Msa1389710:intron | 40.0% | |
| TTTGAACAGTTCACCACAGA+GGG | - | tig0021300:3157-3176 | None:intergenic | 40.0% | |
| ATTTGAACAGTTCACCACAG+AGG | - | tig0021300:3158-3177 | None:intergenic | 40.0% | |
| ! | CAATTATTCGAGTTAGGACG+AGG | - | tig0021300:3208-3227 | None:intergenic | 40.0% |
| ATTCAATACCTTCCTGCCAA+AGG | + | tig0021300:3456-3475 | Msa1389710:CDS | 40.0% | |
| TGATTTGATGTTCCTTTGGC+AGG | - | tig0021300:3471-3490 | None:intergenic | 40.0% | |
| CAAATCAAACTTGAGACCAC+TGG | + | tig0021300:3484-3503 | Msa1389710:CDS | 40.0% | |
| ! | ATGGATTAAGTTGCGACACT+CGG | + | tig0021300:3635-3654 | Msa1389710:intron | 40.0% |
| ! | GGAGTATTATAACAGGGGTT+AGG | + | tig0021300:3700-3719 | Msa1389710:intron | 40.0% |
| TAATTCTTCCCGAGCATCTA+TGG | + | tig0021300:3793-3812 | Msa1389710:intron | 40.0% | |
| AATTCTTCCCGAGCATCTAT+GGG | + | tig0021300:3794-3813 | Msa1389710:intron | 40.0% | |
| ATTACATCCCCATAGATGCT+CGG | - | tig0021300:3805-3824 | None:intergenic | 40.0% | |
| AGCATCTATGGGGATGTAAT+TGG | + | tig0021300:3805-3824 | Msa1389710:intron | 40.0% | |
| AAGTCAAGATAACAAGGGCT+GGG | - | tig0021300:3852-3871 | None:intergenic | 40.0% | |
| TAAGTCAAGATAACAAGGGC+TGG | - | tig0021300:3853-3872 | None:intergenic | 40.0% | |
| GTTTACTGTCCACACTATCT+AGG | + | tig0021300:3880-3899 | Msa1389710:intron | 40.0% | |
| AACGTCATGACTGTTTGTGA+TGG | + | tig0021300:4072-4091 | Msa1389710:intron | 40.0% | |
| ! | TTGTGATGGAAAAGAACACG+AGG | + | tig0021300:4086-4105 | Msa1389710:intron | 40.0% |
| ! | TTCTTTTTGTTGGGGAGTAG+GGG | + | tig0021300:4437-4456 | Msa1389710:intron | 40.0% |
| GGTCGACAAAATCTAGTGTT+TGG | - | tig0021300:4850-4869 | None:intergenic | 40.0% | |
| !!! | GTCGACCTTTTTCAATTTGC+CGG | + | tig0021300:4863-4882 | Msa1389710:CDS | 40.0% |
| ACACACCGGCAAATTGAAAA+AGG | - | tig0021300:4871-4890 | None:intergenic | 40.0% | |
| ! | GCGGATATTTTATCATGGTG+GGG | + | tig0021300:5080-5099 | Msa1389710:CDS | 40.0% |
| ! | GAAGCCGAGTCTTATCATTA+TGG | + | tig0021300:5172-5191 | Msa1389710:CDS | 40.0% |
| GCATTTGTCAAAAGCAAGCA+AGG | - | tig0021300:5206-5225 | None:intergenic | 40.0% | |
| ! | TGCTTTTGACAAATGCTCTG+AGG | + | tig0021300:5210-5229 | Msa1389710:CDS | 40.0% |
| ! | CTCTGAGGAATTTATCTTGG+TGG | + | tig0021300:5225-5244 | Msa1389710:CDS | 40.0% |
| TCGTCAATAGGAAATGAACG+GGG | + | tig0021300:5313-5332 | Msa1389710:CDS | 40.0% | |
| ATGCATTGAGCAACCCAAAT+AGG | + | tig0021300:5629-5648 | Msa1389710:CDS | 40.0% | |
| ATTGAGCAACCCAAATAGGT+GGG | + | tig0021300:5633-5652 | Msa1389710:CDS | 40.0% | |
| TCTCATATCCCCACCTATTT+GGG | - | tig0021300:5645-5664 | None:intergenic | 40.0% | |
| AGCAACTCTATGTATGCACT+GGG | + | tig0021300:5664-5683 | Msa1389710:CDS | 40.0% | |
| TTGATTACGCTTCCAACTCA+AGG | + | tig0021300:5736-5755 | Msa1389710:CDS | 40.0% | |
| CAAGTTCCTTCATGTTGGAT+TGG | + | tig0021300:5761-5780 | Msa1389710:CDS | 40.0% | |
| GCCAATAATTTGACAGGAGT+AGG | + | tig0021300:5886-5905 | Msa1389710:three_prime_UTR | 40.0% | |
| TTCAAGCACCTGAAACTCGT+AGG | - | tig0021300:899-918 | None:intergenic | 45.0% | |
| ATGAATGTGGAAGTGACACG+TGG | - | tig0021300:1264-1283 | None:intergenic | 45.0% | |
| ATGAATGTGGAAGTGACACG+TGG | - | tig0021300:1264-1283 | None:intergenic | 45.0% | |
| ATAAACGTGGAAGTGACACG+TGG | - | tig0021300:2016-2035 | None:intergenic | 45.0% | |
| TTGATGTTCCTTTGGCAGGA+AGG | - | tig0021300:3467-3486 | None:intergenic | 45.0% | |
| ATTCTTCCCGAGCATCTATG+GGG | + | tig0021300:3795-3814 | Msa1389710:intron | 45.0% | |
| TTACATCCCCATAGATGCTC+GGG | - | tig0021300:3804-3823 | None:intergenic | 45.0% | |
| AGTCAAGATAACAAGGGCTG+GGG | - | tig0021300:3851-3870 | None:intergenic | 45.0% | |
| GGAAAACTTTCTGACTGCAG+AGG | - | tig0021300:3982-4001 | None:intergenic | 45.0% | |
| GACGCTTTGACACTCTCTTA+TGG | - | tig0021300:4307-4326 | None:intergenic | 45.0% | |
| ACGATTGTAGGGGAATTGCA+TGG | + | tig0021300:4359-4378 | Msa1389710:intron | 45.0% | |
| GTAGGGGAATTGCATGGAAA+TGG | + | tig0021300:4365-4384 | Msa1389710:intron | 45.0% | |
| AGAGAACCGTGAACTTCCTT+TGG | + | tig0021300:4805-4824 | Msa1389710:CDS | 45.0% | |
| GCACATCCAAAGGAAGTTCA+CGG | - | tig0021300:4814-4833 | None:intergenic | 45.0% | |
| CTTCCAATTCTTGCACACAC+CGG | - | tig0021300:4885-4904 | None:intergenic | 45.0% | |
| CGTCAATAGGAAATGAACGG+GGG | + | tig0021300:5314-5333 | Msa1389710:CDS | 45.0% | |
| AATAGGAAATGAACGGGGGA+GGG | + | tig0021300:5318-5337 | Msa1389710:CDS | 45.0% | |
| TCACTACCAAGGCCAACATA+GGG | + | tig0021300:5380-5399 | Msa1389710:CDS | 45.0% | |
| CATTGAGCAACCCAAATAGG+TGG | + | tig0021300:5632-5651 | Msa1389710:CDS | 45.0% | |
| TTGAGCAACCCAAATAGGTG+GGG | + | tig0021300:5634-5653 | Msa1389710:CDS | 45.0% | |
| CTCTCATATCCCCACCTATT+TGG | - | tig0021300:5646-5665 | None:intergenic | 45.0% | |
| GAGCAACTCTATGTATGCAC+TGG | + | tig0021300:5663-5682 | Msa1389710:CDS | 45.0% | |
| ! | AAGGAACTTGCTCCTTGAGT+TGG | - | tig0021300:5751-5770 | None:intergenic | 45.0% |
| AGGAGCAAGTTCCTTCATGT+TGG | + | tig0021300:5756-5775 | Msa1389710:CDS | 45.0% | |
| GGAGTAGGAAAAGCTTGCAA+TGG | + | tig0021300:5901-5920 | Msa1389710:three_prime_UTR | 45.0% | |
| !! | TAAAAAAAAGAAATATTTAA+TGG | - | tig0021300:510-529 | None:intergenic | 5.0% |
| !!! | ATTAAATATTTCTTTTTTTT+AGG | + | tig0021300:509-528 | Msa1389710:intron | 5.0% |
| !!! | ATTTTTATATATAATATAAG+AGG | + | tig0021300:791-810 | Msa1389710:intron | 5.0% |
| !!! | TTTTTATATATAATATAAGA+GGG | + | tig0021300:792-811 | Msa1389710:intron | 5.0% |
| !! | ATTTATGTTAAATAAAATAT+TGG | - | tig0021300:1584-1603 | None:intergenic | 5.0% |
| !! | ATTTATGTTAAATAAAATAT+TGG | - | tig0021300:1584-1603 | None:intergenic | 5.0% |
| ! | AGGAGCATACCATTGTAGGC+TGG | - | tig0021300:3188-3207 | None:intergenic | 50.0% |
| ! | GACGAGGAGCATACCATTGT+AGG | - | tig0021300:3192-3211 | None:intergenic | 50.0% |
| TGCCTCGTCATGGTAGTTCT+GGG | - | tig0021300:3317-3336 | None:intergenic | 50.0% | |
| ! | TAGCTTGTACTGCCTCGTCA+TGG | - | tig0021300:3327-3346 | None:intergenic | 50.0% |
| CGAGGCAGTACAAGCTAATG+AGG | + | tig0021300:3330-3349 | Msa1389710:CDS | 50.0% | |
| AGAGTCAAGGAGCTGCTTGA+AGG | + | tig0021300:3412-3431 | Msa1389710:CDS | 50.0% | |
| GAGTCAAGGAGCTGCTTGAA+GGG | + | tig0021300:3413-3432 | Msa1389710:CDS | 50.0% | |
| ! | TGTTTTACGCGAGCGAGCAT+TGG | + | tig0021300:3757-3776 | Msa1389710:intron | 50.0% |
| ATAACAAGGGCTGGGGAATG+GGG | - | tig0021300:3844-3863 | None:intergenic | 50.0% | |
| GATAACAAGGGCTGGGGAAT+GGG | - | tig0021300:3845-3864 | None:intergenic | 50.0% | |
| AGATAACAAGGGCTGGGGAA+TGG | - | tig0021300:3846-3865 | None:intergenic | 50.0% | |
| TTGCCGGTGTGTGCAAGAAT+TGG | + | tig0021300:4879-4898 | Msa1389710:CDS | 50.0% | |
| CGGTGTGTGCAAGAATTGGA+AGG | + | tig0021300:4883-4902 | Msa1389710:CDS | 50.0% | |
| TTGGTCGGGTAGGCTAATCA+AGG | - | tig0021300:4996-5015 | None:intergenic | 50.0% | |
| CAATAGGAAATGAACGGGGG+AGG | + | tig0021300:5317-5336 | Msa1389710:CDS | 50.0% | |
| GTCACTACCAAGGCCAACAT+AGG | + | tig0021300:5379-5398 | Msa1389710:CDS | 50.0% | |
| CACTACCAAGGCCAACATAG+GGG | + | tig0021300:5381-5400 | Msa1389710:CDS | 50.0% | |
| CAAGCTGAGTACCCCTATGT+TGG | - | tig0021300:5395-5414 | None:intergenic | 50.0% | |
| ATGAATGTGGGAGTGGCACG+TGG | - | tig0021300:1757-1776 | None:intergenic | 55.0% | |
| TGTATTTACCCGGCGTTGCC+CGG | - | tig0021300:2831-2850 | None:intergenic | 55.0% | |
| ATCAGCCTGCCAGCCTACAA+TGG | + | tig0021300:3176-3195 | Msa1389710:intron | 55.0% | |
| GCATACCATTGTAGGCTGGC+AGG | - | tig0021300:3184-3203 | None:intergenic | 55.0% | |
| !! | CCTCGTCATGGTAGTTCTGG+GGG | - | tig0021300:3315-3334 | None:intergenic | 55.0% |
| ! | GCCTCGTCATGGTAGTTCTG+GGG | - | tig0021300:3316-3335 | None:intergenic | 55.0% |
| CTGCCTCGTCATGGTAGTTC+TGG | - | tig0021300:3318-3337 | None:intergenic | 55.0% | |
| !! | TACGCGAGCGAGCATTGGAA+AGG | + | tig0021300:3762-3781 | Msa1389710:intron | 55.0% |
| !! | ACGCGAGCGAGCATTGGAAA+GGG | + | tig0021300:3763-3782 | Msa1389710:intron | 55.0% |
| ! | GAGTACCCCTATGTTGGCCT+TGG | - | tig0021300:5389-5408 | None:intergenic | 55.0% |
| ATGTCTAACCCGGGCAACGC+CGG | + | tig0021300:2819-2838 | Msa1389710:intron | 60.0% | |
| GTATTTACCCGGCGTTGCCC+GGG | - | tig0021300:2830-2849 | None:intergenic | 60.0% | |
| CCCCCAGAACTACCATGACG+AGG | + | tig0021300:3312-3331 | Msa1389710:CDS | 60.0% | |
| ! | AGGTGCTGCGGCAAGAGTCA+AGG | + | tig0021300:3399-3418 | Msa1389710:CDS | 60.0% |
| !! | CGAGCGAGCATTGGAAAGGG+TGG | + | tig0021300:3766-3785 | Msa1389710:intron | 60.0% |
| AGGAAATGAACGGGGGAGGG+TGG | + | tig0021300:5321-5340 | Msa1389710:CDS | 60.0% | |
| ! | GGGGAGGGTGGTTGACTTTG+TGG | + | tig0021300:5333-5352 | Msa1389710:CDS | 60.0% |
| TGTCTAACCCGGGCAACGCC+GGG | + | tig0021300:2820-2839 | Msa1389710:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021300 | gene | 170 | 6094 | 170 | ID=Msa1389710;Name=Msa1389710 |
| tig0021300 | mRNA | 170 | 6094 | 170 | ID=Msa1389710-mRNA-1;Parent=Msa1389710;Name=Msa1389710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.33|0.5|0.5|1|1|4|263|448 |
| tig0021300 | exon | 170 | 220 | 170 | ID=Msa1389710-mRNA-1:exon:11788;Parent=Msa1389710-mRNA-1 |
| tig0021300 | exon | 859 | 909 | 859 | ID=Msa1389710-mRNA-1:exon:11789;Parent=Msa1389710-mRNA-1 |
| tig0021300 | exon | 3310 | 3505 | 3310 | ID=Msa1389710-mRNA-1:exon:11790;Parent=Msa1389710-mRNA-1 |
| tig0021300 | exon | 4783 | 6094 | 4783 | ID=Msa1389710-mRNA-1:exon:11791;Parent=Msa1389710-mRNA-1 |
| tig0021300 | CDS | 170 | 220 | 170 | ID=Msa1389710-mRNA-1:cds;Parent=Msa1389710-mRNA-1 |
| tig0021300 | CDS | 859 | 909 | 859 | ID=Msa1389710-mRNA-1:cds;Parent=Msa1389710-mRNA-1 |
| tig0021300 | CDS | 3310 | 3505 | 3310 | ID=Msa1389710-mRNA-1:cds;Parent=Msa1389710-mRNA-1 |
| tig0021300 | CDS | 4783 | 5831 | 4783 | ID=Msa1389710-mRNA-1:cds;Parent=Msa1389710-mRNA-1 |
| tig0021300 | three_prime_UTR | 5832 | 6094 | 5832 | ID=Msa1389710-mRNA-1:three_prime_utr;Parent=Msa1389710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
