Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391440 | AET04690.2 | 71.429 | 308 | 46 | 6 | 1 | 300 | 1 | 274 | 2.32e-131 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391440 | sp|Q8L9Y3|ARR14_ARATH | 37.165 | 261 | 119 | 2 | 13 | 228 | 6 | 266 | 1.27e-48 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391440 | G7LD51 | 71.429 | 308 | 46 | 6 | 1 | 300 | 1 | 274 | 1.11e-131 | 385 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1391440 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391440 | MtrunA17_Chr8g0383961 | 71.753 | 308 | 35 | 7 | 1 | 300 | 1 | 264 | 1.22e-133 | 380 |
| Msa1391440 | MtrunA17_Chr6g0471041 | 51.327 | 339 | 129 | 7 | 1 | 325 | 1 | 317 | 3.05e-101 | 303 |
| Msa1391440 | MtrunA17_Chr4g0009851 | 48.476 | 328 | 136 | 8 | 1 | 313 | 1 | 310 | 8.73e-92 | 276 |
| Msa1391440 | MtrunA17_Chr4g0009981 | 47.601 | 271 | 113 | 6 | 58 | 313 | 1 | 257 | 6.97e-74 | 228 |
| Msa1391440 | MtrunA17_Chr4g0009901 | 44.637 | 289 | 128 | 6 | 1 | 278 | 1 | 268 | 3.97e-70 | 219 |
| Msa1391440 | MtrunA17_Chr1g0161431 | 37.203 | 379 | 162 | 9 | 12 | 320 | 9 | 381 | 1.02e-67 | 223 |
| Msa1391440 | MtrunA17_Chr8g0391911 | 42.149 | 242 | 102 | 5 | 9 | 213 | 4 | 244 | 4.34e-53 | 175 |
| Msa1391440 | MtrunA17_Chr2g0294911 | 41.667 | 240 | 106 | 2 | 13 | 218 | 28 | 267 | 9.96e-51 | 177 |
| Msa1391440 | MtrunA17_Chr8g0376881 | 38.077 | 260 | 122 | 3 | 14 | 237 | 25 | 281 | 1.18e-48 | 170 |
| Msa1391440 | MtrunA17_Chr4g0067981 | 39.669 | 242 | 110 | 2 | 13 | 218 | 30 | 271 | 3.17e-48 | 171 |
| Msa1391440 | MtrunA17_Chr3g0123131 | 37.132 | 272 | 131 | 4 | 14 | 247 | 13 | 282 | 1.43e-47 | 168 |
| Msa1391440 | MtrunA17_Chr6g0456631 | 47.134 | 157 | 70 | 4 | 9 | 153 | 4 | 159 | 9.76e-42 | 142 |
| Msa1391440 | MtrunA17_Chr4g0011071 | 50.735 | 136 | 56 | 2 | 61 | 185 | 36 | 171 | 7.71e-41 | 140 |
| Msa1391440 | MtrunA17_Chr4g0074411 | 33.460 | 263 | 133 | 3 | 14 | 234 | 18 | 280 | 4.36e-40 | 148 |
| Msa1391440 | MtrunA17_Chr4g0074401 | 35.060 | 251 | 125 | 3 | 14 | 226 | 17 | 267 | 4.14e-39 | 145 |
| Msa1391440 | MtrunA17_Chr3g0137101 | 35.081 | 248 | 119 | 3 | 13 | 218 | 7 | 254 | 3.18e-38 | 143 |
| Msa1391440 | MtrunA17_Chr3g0134481 | 37.186 | 199 | 101 | 1 | 13 | 211 | 7 | 181 | 4.82e-38 | 134 |
| Msa1391440 | MtrunA17_Chr1g0149841 | 34.426 | 244 | 122 | 2 | 13 | 218 | 4 | 247 | 7.12e-37 | 138 |
| Msa1391440 | MtrunA17_Chr2g0304841 | 31.559 | 263 | 133 | 3 | 6 | 221 | 10 | 272 | 3.00e-36 | 138 |
| Msa1391440 | MtrunA17_Chr7g0275401 | 32.258 | 248 | 129 | 3 | 13 | 221 | 4 | 251 | 3.28e-35 | 129 |
| Msa1391440 | MtrunA17_Chr4g0009991 | 52.586 | 116 | 45 | 2 | 106 | 211 | 1 | 116 | 1.61e-33 | 120 |
| Msa1391440 | MtrunA17_Chr3g0134461 | 36.139 | 202 | 114 | 3 | 13 | 213 | 7 | 194 | 7.12e-33 | 120 |
| Msa1391440 | MtrunA17_Chr7g0275891 | 31.395 | 258 | 126 | 4 | 13 | 219 | 4 | 261 | 9.80e-32 | 121 |
| Msa1391440 | MtrunA17_Chr4g0074421 | 35.326 | 184 | 86 | 2 | 65 | 215 | 3 | 186 | 5.10e-30 | 113 |
| Msa1391440 | MtrunA17_Chr1g0149851 | 30.502 | 259 | 127 | 3 | 13 | 218 | 4 | 262 | 6.03e-29 | 116 |
| Msa1391440 | MtrunA17_Chr5g0423031 | 54.255 | 94 | 38 | 2 | 1 | 94 | 1 | 89 | 7.48e-24 | 96.3 |
| Msa1391440 | MtrunA17_Chr8g0350761 | 26.623 | 308 | 156 | 8 | 18 | 268 | 21 | 315 | 5.13e-22 | 96.3 |
| Msa1391440 | MtrunA17_Chr4g0010001 | 55.556 | 81 | 35 | 1 | 14 | 94 | 10 | 89 | 1.23e-21 | 87.8 |
| Msa1391440 | MtrunA17_Chr1g0181811 | 31.707 | 123 | 79 | 2 | 18 | 136 | 85 | 206 | 2.50e-14 | 73.9 |
| Msa1391440 | MtrunA17_Chr8g0345901 | 31.452 | 124 | 82 | 1 | 16 | 136 | 34 | 157 | 1.07e-13 | 72.0 |
| Msa1391440 | MtrunA17_Chr4g0030271 | 34.146 | 123 | 76 | 2 | 18 | 136 | 89 | 210 | 1.07e-13 | 72.0 |
| Msa1391440 | MtrunA17_Chr6g0473731 | 31.765 | 170 | 96 | 6 | 94 | 246 | 10 | 176 | 1.14e-13 | 71.2 |
| Msa1391440 | MtrunA17_Chr3g0127941 | 30.328 | 122 | 82 | 1 | 18 | 136 | 56 | 177 | 2.48e-13 | 70.9 |
| Msa1391440 | MtrunA17_Chr7g0276361 | 30.400 | 125 | 84 | 1 | 15 | 136 | 11 | 135 | 2.73e-13 | 70.5 |
| Msa1391440 | MtrunA17_Chr4g0031961 | 53.448 | 58 | 27 | 0 | 161 | 218 | 130 | 187 | 1.94e-12 | 67.0 |
| Msa1391440 | MtrunA17_Chr5g0400241 | 29.197 | 137 | 90 | 4 | 5 | 139 | 6 | 137 | 1.07e-11 | 65.5 |
| Msa1391440 | MtrunA17_Chr5g0417521 | 47.143 | 70 | 35 | 2 | 162 | 230 | 15 | 83 | 2.38e-11 | 63.9 |
| Msa1391440 | MtrunA17_Chr7g0255711 | 50.000 | 58 | 29 | 0 | 161 | 218 | 90 | 147 | 4.37e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1391440 | AT2G01760.1 | 37.165 | 261 | 119 | 2 | 13 | 228 | 6 | 266 | 1.29e-49 | 170 |
| Msa1391440 | AT2G01760.2 | 33.564 | 289 | 119 | 3 | 13 | 228 | 6 | 294 | 8.12e-44 | 155 |
| Msa1391440 | AT3G16857.2 | 34.457 | 267 | 119 | 2 | 8 | 218 | 27 | 293 | 8.03e-42 | 154 |
| Msa1391440 | AT3G16857.1 | 34.457 | 267 | 119 | 2 | 8 | 218 | 27 | 293 | 8.48e-42 | 154 |
| Msa1391440 | AT1G67710.1 | 37.698 | 252 | 118 | 5 | 15 | 227 | 8 | 259 | 7.44e-41 | 149 |
| Msa1391440 | AT2G25180.1 | 36.111 | 252 | 126 | 4 | 1 | 218 | 1 | 251 | 1.24e-39 | 147 |
| Msa1391440 | AT4G31920.1 | 37.449 | 243 | 123 | 5 | 1 | 218 | 1 | 239 | 9.72e-38 | 141 |
| Msa1391440 | AT2G01760.3 | 34.826 | 201 | 86 | 2 | 73 | 228 | 1 | 201 | 5.48e-32 | 122 |
| Msa1391440 | AT3G16857.3 | 33.184 | 223 | 93 | 2 | 52 | 218 | 1 | 223 | 7.74e-32 | 125 |
| Msa1391440 | AT5G58080.1 | 30.544 | 239 | 132 | 3 | 13 | 218 | 13 | 250 | 5.96e-30 | 120 |
| Msa1391440 | AT1G49190.1 | 29.688 | 256 | 137 | 5 | 5 | 218 | 21 | 275 | 1.33e-28 | 114 |
| Msa1391440 | AT1G67710.2 | 36.598 | 194 | 84 | 5 | 73 | 227 | 1 | 194 | 4.44e-27 | 110 |
| Msa1391440 | AT3G62670.1 | 30.962 | 239 | 126 | 6 | 19 | 224 | 42 | 274 | 3.11e-26 | 108 |
| Msa1391440 | AT5G49240.1 | 28.125 | 256 | 135 | 3 | 3 | 215 | 27 | 276 | 1.24e-25 | 104 |
| Msa1391440 | AT1G49190.2 | 35.878 | 131 | 84 | 0 | 6 | 136 | 22 | 152 | 9.87e-21 | 93.2 |
| Msa1391440 | AT1G67710.3 | 35.057 | 174 | 74 | 5 | 93 | 227 | 12 | 185 | 2.61e-18 | 85.5 |
| Msa1391440 | AT5G60100.2 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 2.28e-16 | 80.1 |
| Msa1391440 | AT5G60100.5 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 2.34e-16 | 80.1 |
| Msa1391440 | AT5G60100.3 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 2.34e-16 | 80.1 |
| Msa1391440 | AT5G60100.1 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 2.34e-16 | 80.1 |
| Msa1391440 | AT5G60100.7 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 2.96e-16 | 79.3 |
| Msa1391440 | AT5G60100.6 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 2.96e-16 | 79.3 |
| Msa1391440 | AT5G60100.4 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 2.96e-16 | 79.3 |
| Msa1391440 | AT2G46790.1 | 32.520 | 123 | 80 | 1 | 18 | 137 | 37 | 159 | 3.74e-15 | 76.3 |
| Msa1391440 | AT2G46790.3 | 32.520 | 123 | 80 | 1 | 18 | 137 | 37 | 159 | 4.64e-15 | 75.9 |
| Msa1391440 | AT5G24470.1 | 31.148 | 122 | 81 | 1 | 18 | 136 | 50 | 171 | 2.47e-14 | 73.9 |
| Msa1391440 | AT5G59570.2 | 52.542 | 59 | 28 | 0 | 160 | 218 | 139 | 197 | 4.88e-13 | 68.9 |
| Msa1391440 | AT5G59570.1 | 52.542 | 59 | 28 | 0 | 160 | 218 | 139 | 197 | 4.88e-13 | 68.9 |
| Msa1391440 | AT3G46640.2 | 53.448 | 58 | 27 | 0 | 161 | 218 | 143 | 200 | 1.15e-12 | 68.2 |
| Msa1391440 | AT3G46640.1 | 53.448 | 58 | 27 | 0 | 161 | 218 | 143 | 200 | 1.15e-12 | 68.2 |
| Msa1391440 | AT3G46640.3 | 53.448 | 58 | 27 | 0 | 161 | 218 | 143 | 200 | 1.29e-12 | 68.2 |
| Msa1391440 | AT5G02810.1 | 31.148 | 122 | 81 | 1 | 18 | 136 | 78 | 199 | 4.86e-12 | 67.4 |
| Msa1391440 | AT5G61380.1 | 29.508 | 122 | 83 | 1 | 18 | 136 | 19 | 140 | 1.11e-11 | 66.2 |
| Msa1391440 | AT5G07210.1 | 38.462 | 104 | 62 | 2 | 132 | 234 | 199 | 301 | 1.63e-11 | 65.5 |
| Msa1391440 | AT5G07210.2 | 38.462 | 104 | 62 | 2 | 132 | 234 | 191 | 293 | 1.83e-11 | 65.5 |
| Msa1391440 | AT5G44190.1 | 51.852 | 54 | 26 | 0 | 159 | 212 | 144 | 197 | 2.10e-11 | 64.7 |
| Msa1391440 | AT2G40970.1 | 48.276 | 58 | 30 | 0 | 161 | 218 | 104 | 161 | 2.37e-11 | 63.5 |
| Msa1391440 | AT5G44190.2 | 51.852 | 54 | 26 | 0 | 159 | 212 | 144 | 197 | 2.41e-11 | 64.3 |
| Msa1391440 | AT5G05090.1 | 50.000 | 58 | 29 | 0 | 161 | 218 | 80 | 137 | 3.11e-11 | 63.2 |
| Msa1391440 | AT3G10760.1 | 50.000 | 58 | 29 | 0 | 161 | 218 | 104 | 161 | 4.41e-11 | 63.5 |
Find 55 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTTGATTCTCGATTAA+AGG | 0.164354 | tig0021435:+18617 | None:intergenic |
| GGAATATGGTATATTCAATT+AGG | 0.202842 | tig0021435:-17814 | None:intergenic |
| AATTGCATCGACAATTTCTA+AGG | 0.211162 | tig0021435:-18466 | Msa1391440:CDS |
| TGTTTCCATCAAAAGTTTAA+AGG | 0.235719 | tig0021435:+18934 | None:intergenic |
| CAAACGGGGCTTGCGAATAT+TGG | 0.275266 | tig0021435:-18646 | Msa1391440:CDS |
| TCCAGTTACAACATGTTCTA+AGG | 0.282036 | tig0021435:-18966 | Msa1391440:intron |
| ATCGCTTTATGAATTGCTTT+TGG | 0.284723 | tig0021435:+18302 | None:intergenic |
| TAAAGAATAGAAAGTCAAAA+AGG | 0.285756 | tig0021435:-18097 | Msa1391440:CDS |
| ATTCTTTAGATGTGTCTCTT+TGG | 0.286927 | tig0021435:+18112 | None:intergenic |
| ACATTTCCACAACAGCATTA+AGG | 0.328612 | tig0021435:+19137 | None:intergenic |
| AGAAATTGTCGATGCAATTC+AGG | 0.341097 | tig0021435:+18470 | None:intergenic |
| GCACAACCTCCATCGGAATA+TGG | 0.347834 | tig0021435:-17828 | Msa1391440:CDS |
| CTCTTAAATCCTCTGGGAAT+TGG | 0.352622 | tig0021435:+19188 | None:intergenic |
| GCAAGTTGCTAGCCATTTGC+AGG | 0.355161 | tig0021435:-18255 | Msa1391440:intron |
| CTAAGGGTTGTGAATGAACT+TGG | 0.358456 | tig0021435:-18449 | Msa1391440:CDS |
| CATAAAGCGATGAATGTTCC+TGG | 0.373937 | tig0021435:-18290 | Msa1391440:CDS |
| ATATACGATTCTTCTTCGTT+AGG | 0.374538 | tig0021435:+18501 | None:intergenic |
| TATACGATTCTTCTTCGTTA+GGG | 0.386785 | tig0021435:+18502 | None:intergenic |
| GAATATGGTATATTCAATTA+GGG | 0.387647 | tig0021435:-17813 | None:intergenic |
| GAACTCAATTGTGTTTCGTT+AGG | 0.423423 | tig0021435:+18038 | None:intergenic |
| ACAAGAACTCTTAAATCCTC+TGG | 0.429240 | tig0021435:+19181 | None:intergenic |
| AACAAACCTTGATAATTGCT+TGG | 0.435234 | tig0021435:+19109 | None:intergenic |
| AGAGTTGTCGTTGCATTGTA+TGG | 0.450449 | tig0021435:+17965 | None:intergenic |
| TGACAGGAATATTGATTTGT+TGG | 0.454324 | tig0021435:+18834 | None:intergenic |
| TAAATCCTCTGGGAATTGGC+TGG | 0.455635 | tig0021435:+19192 | None:intergenic |
| TGATGAAAGCTGTTGCAAAC+GGG | 0.461960 | tig0021435:-18661 | Msa1391440:CDS |
| ATAAACATAATCAAAGCAAA+AGG | 0.469172 | tig0021435:-18553 | Msa1391440:CDS |
| TCTATTCCAAGCAATTATCA+AGG | 0.472629 | tig0021435:-19115 | Msa1391440:intron |
| AAATCATATGAATCCATGTC+TGG | 0.476246 | tig0021435:+18872 | None:intergenic |
| TAAACATAATCAAAGCAAAA+GGG | 0.478480 | tig0021435:-18552 | Msa1391440:CDS |
| GTGATGAAAGCTGTTGCAAA+CGG | 0.482441 | tig0021435:-18662 | Msa1391440:CDS |
| TATATATTCTTACTGATGAC+AGG | 0.490720 | tig0021435:+18818 | None:intergenic |
| GACAGGAATATTGATTTGTT+GGG | 0.492437 | tig0021435:+18835 | None:intergenic |
| CGAAGAAGAATCGTATATCA+TGG | 0.494656 | tig0021435:-18496 | Msa1391440:CDS |
| TGATTTGTTGGGTAACATGT+CGG | 0.535639 | tig0021435:+18846 | None:intergenic |
| ATAGTGATGATGAATCATCT+TGG | 0.538208 | tig0021435:+17856 | None:intergenic |
| AGAGGATTTAAGAGTTCTTG+TGG | 0.539349 | tig0021435:-19179 | Msa1391440:CDS |
| CAAGAACTCTTAAATCCTCT+GGG | 0.542866 | tig0021435:+19182 | None:intergenic |
| CATCTTGGATCATGTAGGAC+TGG | 0.543187 | tig0021435:+17871 | None:intergenic |
| TGAAGCTCAAATGCCAGACA+TGG | 0.549847 | tig0021435:-18885 | Msa1391440:CDS |
| TGTGCAGTGATGTGTGATGA+TGG | 0.552839 | tig0021435:-18698 | Msa1391440:intron |
| AAATCCTCTGGGAATTGGCT+GGG | 0.555538 | tig0021435:+19193 | None:intergenic |
| TGATGTCCTTAATGCTGTTG+TGG | 0.557832 | tig0021435:-19143 | Msa1391440:CDS |
| ATACGAAGCACAACCTCCAT+CGG | 0.580105 | tig0021435:-17835 | Msa1391440:CDS |
| ATACGATTCTTCTTCGTTAG+GGG | 0.588904 | tig0021435:+18503 | None:intergenic |
| AATATACCATATTCCGATGG+AGG | 0.592529 | tig0021435:+17822 | None:intergenic |
| ATTGCATCGACAATTTCTAA+GGG | 0.597352 | tig0021435:-18465 | Msa1391440:CDS |
| AGAATCAAATCAAGAACATG+TGG | 0.615053 | tig0021435:-18607 | Msa1391440:CDS |
| GATGAAAGCTGTTGCAAACG+GGG | 0.621578 | tig0021435:-18660 | Msa1391440:CDS |
| AAACATAATCAAAGCAAAAG+GGG | 0.630491 | tig0021435:-18551 | Msa1391440:CDS |
| TGAATCATCTTGGATCATGT+AGG | 0.631847 | tig0021435:+17866 | None:intergenic |
| TTGAATATACCATATTCCGA+TGG | 0.640230 | tig0021435:+17819 | None:intergenic |
| AACAAAGGGCTGTGTTGATG+TGG | 0.643059 | tig0021435:-18915 | Msa1391440:CDS |
| ACATGTGGCAGTGTGTTGCA+AGG | 0.672995 | tig0021435:-18592 | Msa1391440:CDS |
| ACTTCCCAGCCAATTCCCAG+AGG | 0.715638 | tig0021435:-19197 | Msa1391440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAGAAAATAAAAATTAT+TGG | + | tig0021435:18637-18656 | None:intergenic | 15.0% |
| !! | AGAGAGAAAATAAAAATTAT+TGG | + | tig0021435:18637-18656 | None:intergenic | 15.0% |
| !! | ATAAACATAATCAAAGCAAA+AGG | - | tig0021435:18485-18504 | Msa1391440:CDS | 20.0% |
| !! | TAAACATAATCAAAGCAAAA+GGG | - | tig0021435:18486-18505 | Msa1391440:CDS | 20.0% |
| !!! | TGTTTTTTGTATTAATGTAG+TGG | - | tig0021435:18808-18827 | Msa1391440:intron | 20.0% |
| !! | TAAAGAATAGAAAGTCAAAA+AGG | - | tig0021435:18941-18960 | Msa1391440:CDS | 20.0% |
| !! | AAAGAATAGAAAGTCAAAAA+GGG | - | tig0021435:18942-18961 | Msa1391440:CDS | 20.0% |
| !! | ATAAACATAATCAAAGCAAA+AGG | - | tig0021435:18485-18504 | Msa1391440:CDS | 20.0% |
| !! | TAAACATAATCAAAGCAAAA+GGG | - | tig0021435:18486-18505 | Msa1391440:CDS | 20.0% |
| !!! | TGTTTTTTGTATTAATGTAG+TGG | - | tig0021435:18808-18827 | Msa1391440:intron | 20.0% |
| !! | TAAAGAATAGAAAGTCAAAA+AGG | - | tig0021435:18941-18960 | Msa1391440:CDS | 20.0% |
| !! | AAAGAATAGAAAGTCAAAAA+GGG | - | tig0021435:18942-18961 | Msa1391440:CDS | 20.0% |
| !! | TTTTGCCTTTAAACTTTTGA+TGG | - | tig0021435:18099-18118 | Msa1391440:CDS | 25.0% |
| ! | TGTTTCCATCAAAAGTTTAA+AGG | + | tig0021435:18107-18126 | None:intergenic | 25.0% |
| !! | TAAACTTTTGATGGAAACAA+AGG | - | tig0021435:18108-18127 | Msa1391440:CDS | 25.0% |
| !! | AAACTTTTGATGGAAACAAA+GGG | - | tig0021435:18109-18128 | Msa1391440:CDS | 25.0% |
| ! | TATATATTCTTACTGATGAC+AGG | + | tig0021435:18223-18242 | None:intergenic | 25.0% |
| !! | TTGATTTGATTCTCGATTAA+AGG | + | tig0021435:18424-18443 | None:intergenic | 25.0% |
| ! | AAACATAATCAAAGCAAAAG+GGG | - | tig0021435:18487-18506 | Msa1391440:CDS | 25.0% |
| ! | GAAAAAGAATCTTACTATCA+AGG | + | tig0021435:18615-18634 | None:intergenic | 25.0% |
| ! | AAGAATAGAAAGTCAAAAAG+GGG | - | tig0021435:18943-18962 | Msa1391440:CDS | 25.0% |
| !! | CTGAGTTCATTAAATTTTCT+GGG | + | tig0021435:19053-19072 | None:intergenic | 25.0% |
| !! | TTTTGCCTTTAAACTTTTGA+TGG | - | tig0021435:18099-18118 | Msa1391440:CDS | 25.0% |
| ! | TGTTTCCATCAAAAGTTTAA+AGG | + | tig0021435:18107-18126 | None:intergenic | 25.0% |
| !! | TAAACTTTTGATGGAAACAA+AGG | - | tig0021435:18108-18127 | Msa1391440:CDS | 25.0% |
| !! | AAACTTTTGATGGAAACAAA+GGG | - | tig0021435:18109-18128 | Msa1391440:CDS | 25.0% |
| ! | TATATATTCTTACTGATGAC+AGG | + | tig0021435:18223-18242 | None:intergenic | 25.0% |
| !! | TTGATTTGATTCTCGATTAA+AGG | + | tig0021435:18424-18443 | None:intergenic | 25.0% |
| ! | AAACATAATCAAAGCAAAAG+GGG | - | tig0021435:18487-18506 | Msa1391440:CDS | 25.0% |
| ! | GAAAAAGAATCTTACTATCA+AGG | + | tig0021435:18615-18634 | None:intergenic | 25.0% |
| ! | AAGAATAGAAAGTCAAAAAG+GGG | - | tig0021435:18943-18962 | Msa1391440:CDS | 25.0% |
| !! | CTGAGTTCATTAAATTTTCT+GGG | + | tig0021435:19053-19072 | None:intergenic | 25.0% |
| TCTATTCCAAGCAATTATCA+AGG | - | tig0021435:17923-17942 | Msa1391440:CDS | 30.0% | |
| ! | AACAAACCTTGATAATTGCT+TGG | + | tig0021435:17932-17951 | None:intergenic | 30.0% |
| CAAAAGTTCAAGAATTTCAC+AGG | + | tig0021435:18008-18027 | None:intergenic | 30.0% | |
| ! | CTGTGAAATTCTTGAACTTT+TGG | - | tig0021435:18006-18025 | Msa1391440:CDS | 30.0% |
| AAATCATATGAATCCATGTC+TGG | + | tig0021435:18169-18188 | None:intergenic | 30.0% | |
| !! | GACAGGAATATTGATTTGTT+GGG | + | tig0021435:18206-18225 | None:intergenic | 30.0% |
| !! | TGACAGGAATATTGATTTGT+TGG | + | tig0021435:18207-18226 | None:intergenic | 30.0% |
| AGAATCAAATCAAGAACATG+TGG | - | tig0021435:18431-18450 | Msa1391440:intron | 30.0% | |
| TATACGATTCTTCTTCGTTA+GGG | + | tig0021435:18539-18558 | None:intergenic | 30.0% | |
| ATATACGATTCTTCTTCGTT+AGG | + | tig0021435:18540-18559 | None:intergenic | 30.0% | |
| ! | AATTGCATCGACAATTTCTA+AGG | - | tig0021435:18572-18591 | Msa1391440:CDS | 30.0% |
| ! | ATTGCATCGACAATTTCTAA+GGG | - | tig0021435:18573-18592 | Msa1391440:CDS | 30.0% |
| ! | ATCGCTTTATGAATTGCTTT+TGG | + | tig0021435:18739-18758 | None:intergenic | 30.0% |
| ACAAAAAACAAACCTGCAAA+TGG | + | tig0021435:18798-18817 | None:intergenic | 30.0% | |
| ATTCTTTAGATGTGTCTCTT+TGG | + | tig0021435:18929-18948 | None:intergenic | 30.0% | |
| AGAATAGAAAGTCAAAAAGG+GGG | - | tig0021435:18944-18963 | Msa1391440:CDS | 30.0% | |
| ! | GCTGAGTTCATTAAATTTTC+TGG | + | tig0021435:19054-19073 | None:intergenic | 30.0% |
| ! | ATAGTGATGATGAATCATCT+TGG | + | tig0021435:19185-19204 | None:intergenic | 30.0% |
| TTGAATATACCATATTCCGA+TGG | + | tig0021435:19222-19241 | None:intergenic | 30.0% | |
| TCTATTCCAAGCAATTATCA+AGG | - | tig0021435:17923-17942 | Msa1391440:CDS | 30.0% | |
| ! | AACAAACCTTGATAATTGCT+TGG | + | tig0021435:17932-17951 | None:intergenic | 30.0% |
| CAAAAGTTCAAGAATTTCAC+AGG | + | tig0021435:18008-18027 | None:intergenic | 30.0% | |
| ! | CTGTGAAATTCTTGAACTTT+TGG | - | tig0021435:18006-18025 | Msa1391440:CDS | 30.0% |
| AAATCATATGAATCCATGTC+TGG | + | tig0021435:18169-18188 | None:intergenic | 30.0% | |
| !! | GACAGGAATATTGATTTGTT+GGG | + | tig0021435:18206-18225 | None:intergenic | 30.0% |
| !! | TGACAGGAATATTGATTTGT+TGG | + | tig0021435:18207-18226 | None:intergenic | 30.0% |
| AGAATCAAATCAAGAACATG+TGG | - | tig0021435:18431-18450 | Msa1391440:intron | 30.0% | |
| TATACGATTCTTCTTCGTTA+GGG | + | tig0021435:18539-18558 | None:intergenic | 30.0% | |
| ATATACGATTCTTCTTCGTT+AGG | + | tig0021435:18540-18559 | None:intergenic | 30.0% | |
| ! | AATTGCATCGACAATTTCTA+AGG | - | tig0021435:18572-18591 | Msa1391440:CDS | 30.0% |
| ! | ATTGCATCGACAATTTCTAA+GGG | - | tig0021435:18573-18592 | Msa1391440:CDS | 30.0% |
| ! | ATCGCTTTATGAATTGCTTT+TGG | + | tig0021435:18739-18758 | None:intergenic | 30.0% |
| ACAAAAAACAAACCTGCAAA+TGG | + | tig0021435:18798-18817 | None:intergenic | 30.0% | |
| ATTCTTTAGATGTGTCTCTT+TGG | + | tig0021435:18929-18948 | None:intergenic | 30.0% | |
| AGAATAGAAAGTCAAAAAGG+GGG | - | tig0021435:18944-18963 | Msa1391440:CDS | 30.0% | |
| ! | GCTGAGTTCATTAAATTTTC+TGG | + | tig0021435:19054-19073 | None:intergenic | 30.0% |
| ! | ATAGTGATGATGAATCATCT+TGG | + | tig0021435:19185-19204 | None:intergenic | 30.0% |
| TTGAATATACCATATTCCGA+TGG | + | tig0021435:19222-19241 | None:intergenic | 30.0% | |
| CAAGAACTCTTAAATCCTCT+GGG | + | tig0021435:17859-17878 | None:intergenic | 35.0% | |
| ACAAGAACTCTTAAATCCTC+TGG | + | tig0021435:17860-17879 | None:intergenic | 35.0% | |
| AGAGGATTTAAGAGTTCTTG+TGG | - | tig0021435:17859-17878 | Msa1391440:CDS | 35.0% | |
| ACATTTCCACAACAGCATTA+AGG | + | tig0021435:17904-17923 | None:intergenic | 35.0% | |
| TAGAACATGTTGTAACTGGA+AGG | + | tig0021435:18072-18091 | None:intergenic | 35.0% | |
| TCCAGTTACAACATGTTCTA+AGG | - | tig0021435:18072-18091 | Msa1391440:CDS | 35.0% | |
| !! | TGATTTGTTGGGTAACATGT+CGG | + | tig0021435:18195-18214 | None:intergenic | 35.0% |
| ATACGATTCTTCTTCGTTAG+GGG | + | tig0021435:18538-18557 | None:intergenic | 35.0% | |
| CGAAGAAGAATCGTATATCA+TGG | - | tig0021435:18542-18561 | Msa1391440:CDS | 35.0% | |
| AGAAATTGTCGATGCAATTC+AGG | + | tig0021435:18571-18590 | None:intergenic | 35.0% | |
| GGAGAGACAAAAATTTACAC+AGG | + | tig0021435:18696-18715 | None:intergenic | 35.0% | |
| ! | GCTTTGCCTCTGAAAAATAA+GGG | + | tig0021435:18717-18736 | None:intergenic | 35.0% |
| ! | ACTTGCTCTTTTGTAAAACC+AGG | + | tig0021435:18769-18788 | None:intergenic | 35.0% |
| GAACTCAATTGTGTTTCGTT+AGG | + | tig0021435:19003-19022 | None:intergenic | 35.0% | |
| TGAATCATCTTGGATCATGT+AGG | + | tig0021435:19175-19194 | None:intergenic | 35.0% | |
| AATATACCATATTCCGATGG+AGG | + | tig0021435:19219-19238 | None:intergenic | 35.0% | |
| CAAGAACTCTTAAATCCTCT+GGG | + | tig0021435:17859-17878 | None:intergenic | 35.0% | |
| ACAAGAACTCTTAAATCCTC+TGG | + | tig0021435:17860-17879 | None:intergenic | 35.0% | |
| AGAGGATTTAAGAGTTCTTG+TGG | - | tig0021435:17859-17878 | Msa1391440:CDS | 35.0% | |
| ACATTTCCACAACAGCATTA+AGG | + | tig0021435:17904-17923 | None:intergenic | 35.0% | |
| TAGAACATGTTGTAACTGGA+AGG | + | tig0021435:18072-18091 | None:intergenic | 35.0% | |
| TCCAGTTACAACATGTTCTA+AGG | - | tig0021435:18072-18091 | Msa1391440:CDS | 35.0% | |
| !! | TGATTTGTTGGGTAACATGT+CGG | + | tig0021435:18195-18214 | None:intergenic | 35.0% |
| ATACGATTCTTCTTCGTTAG+GGG | + | tig0021435:18538-18557 | None:intergenic | 35.0% | |
| CGAAGAAGAATCGTATATCA+TGG | - | tig0021435:18542-18561 | Msa1391440:CDS | 35.0% | |
| AGAAATTGTCGATGCAATTC+AGG | + | tig0021435:18571-18590 | None:intergenic | 35.0% | |
| GGAGAGACAAAAATTTACAC+AGG | + | tig0021435:18696-18715 | None:intergenic | 35.0% | |
| ! | GCTTTGCCTCTGAAAAATAA+GGG | + | tig0021435:18717-18736 | None:intergenic | 35.0% |
| ! | ACTTGCTCTTTTGTAAAACC+AGG | + | tig0021435:18769-18788 | None:intergenic | 35.0% |
| GAACTCAATTGTGTTTCGTT+AGG | + | tig0021435:19003-19022 | None:intergenic | 35.0% | |
| TGAATCATCTTGGATCATGT+AGG | + | tig0021435:19175-19194 | None:intergenic | 35.0% | |
| AATATACCATATTCCGATGG+AGG | + | tig0021435:19219-19238 | None:intergenic | 35.0% | |
| ! | CTCTTAAATCCTCTGGGAAT+TGG | + | tig0021435:17853-17872 | None:intergenic | 40.0% |
| TGATGTCCTTAATGCTGTTG+TGG | - | tig0021435:17895-17914 | Msa1391440:CDS | 40.0% | |
| GCCTTAGAACATGTTGTAAC+TGG | + | tig0021435:18076-18095 | None:intergenic | 40.0% | |
| GTGATGAAAGCTGTTGCAAA+CGG | - | tig0021435:18376-18395 | Msa1391440:intron | 40.0% | |
| TGATGAAAGCTGTTGCAAAC+GGG | - | tig0021435:18377-18396 | Msa1391440:intron | 40.0% | |
| CTAAGGGTTGTGAATGAACT+TGG | - | tig0021435:18589-18608 | Msa1391440:CDS | 40.0% | |
| !!! | GTCTCTCCCTTATTTTTCAG+AGG | - | tig0021435:18708-18727 | Msa1391440:intron | 40.0% |
| ! | GGCTTTGCCTCTGAAAAATA+AGG | + | tig0021435:18718-18737 | None:intergenic | 40.0% |
| CATAAAGCGATGAATGTTCC+TGG | - | tig0021435:18748-18767 | Msa1391440:intron | 40.0% | |
| ATAGAAAGTCAAAAAGGGGG+CGG | - | tig0021435:18947-18966 | Msa1391440:CDS | 40.0% | |
| AGAGTTGTCGTTGCATTGTA+TGG | + | tig0021435:19076-19095 | None:intergenic | 40.0% | |
| !! | GGACTGGTCAGTAAAAATGT+TGG | + | tig0021435:19154-19173 | None:intergenic | 40.0% |
| ! | CTCTTAAATCCTCTGGGAAT+TGG | + | tig0021435:17853-17872 | None:intergenic | 40.0% |
| TGATGTCCTTAATGCTGTTG+TGG | - | tig0021435:17895-17914 | Msa1391440:CDS | 40.0% | |
| GCCTTAGAACATGTTGTAAC+TGG | + | tig0021435:18076-18095 | None:intergenic | 40.0% | |
| GTGATGAAAGCTGTTGCAAA+CGG | - | tig0021435:18376-18395 | Msa1391440:intron | 40.0% | |
| TGATGAAAGCTGTTGCAAAC+GGG | - | tig0021435:18377-18396 | Msa1391440:intron | 40.0% | |
| CTAAGGGTTGTGAATGAACT+TGG | - | tig0021435:18589-18608 | Msa1391440:CDS | 40.0% | |
| !!! | GTCTCTCCCTTATTTTTCAG+AGG | - | tig0021435:18708-18727 | Msa1391440:intron | 40.0% |
| ! | GGCTTTGCCTCTGAAAAATA+AGG | + | tig0021435:18718-18737 | None:intergenic | 40.0% |
| CATAAAGCGATGAATGTTCC+TGG | - | tig0021435:18748-18767 | Msa1391440:intron | 40.0% | |
| ATAGAAAGTCAAAAAGGGGG+CGG | - | tig0021435:18947-18966 | Msa1391440:CDS | 40.0% | |
| AGAGTTGTCGTTGCATTGTA+TGG | + | tig0021435:19076-19095 | None:intergenic | 40.0% | |
| !! | GGACTGGTCAGTAAAAATGT+TGG | + | tig0021435:19154-19173 | None:intergenic | 40.0% |
| ! | AAATCCTCTGGGAATTGGCT+GGG | + | tig0021435:17848-17867 | None:intergenic | 45.0% |
| ! | TAAATCCTCTGGGAATTGGC+TGG | + | tig0021435:17849-17868 | None:intergenic | 45.0% |
| ! | AACAAAGGGCTGTGTTGATG+TGG | - | tig0021435:18123-18142 | Msa1391440:CDS | 45.0% |
| TGAAGCTCAAATGCCAGACA+TGG | - | tig0021435:18153-18172 | Msa1391440:intron | 45.0% | |
| TGTGCAGTGATGTGTGATGA+TGG | - | tig0021435:18340-18359 | Msa1391440:intron | 45.0% | |
| GATGAAAGCTGTTGCAAACG+GGG | - | tig0021435:18378-18397 | Msa1391440:intron | 45.0% | |
| CATCTTGGATCATGTAGGAC+TGG | + | tig0021435:19170-19189 | None:intergenic | 45.0% | |
| ATACGAAGCACAACCTCCAT+CGG | - | tig0021435:19203-19222 | Msa1391440:CDS | 45.0% | |
| ! | AAATCCTCTGGGAATTGGCT+GGG | + | tig0021435:17848-17867 | None:intergenic | 45.0% |
| ! | TAAATCCTCTGGGAATTGGC+TGG | + | tig0021435:17849-17868 | None:intergenic | 45.0% |
| ! | AACAAAGGGCTGTGTTGATG+TGG | - | tig0021435:18123-18142 | Msa1391440:CDS | 45.0% |
| TGAAGCTCAAATGCCAGACA+TGG | - | tig0021435:18153-18172 | Msa1391440:intron | 45.0% | |
| TGTGCAGTGATGTGTGATGA+TGG | - | tig0021435:18340-18359 | Msa1391440:intron | 45.0% | |
| GATGAAAGCTGTTGCAAACG+GGG | - | tig0021435:18378-18397 | Msa1391440:intron | 45.0% | |
| CATCTTGGATCATGTAGGAC+TGG | + | tig0021435:19170-19189 | None:intergenic | 45.0% | |
| ATACGAAGCACAACCTCCAT+CGG | - | tig0021435:19203-19222 | Msa1391440:CDS | 45.0% | |
| CAAACGGGGCTTGCGAATAT+TGG | - | tig0021435:18392-18411 | Msa1391440:intron | 50.0% | |
| ACATGTGGCAGTGTGTTGCA+AGG | - | tig0021435:18446-18465 | Msa1391440:CDS | 50.0% | |
| GCAAGTTGCTAGCCATTTGC+AGG | - | tig0021435:18783-18802 | Msa1391440:intron | 50.0% | |
| GCACAACCTCCATCGGAATA+TGG | - | tig0021435:19210-19229 | Msa1391440:CDS | 50.0% | |
| CAAACGGGGCTTGCGAATAT+TGG | - | tig0021435:18392-18411 | Msa1391440:intron | 50.0% | |
| ACATGTGGCAGTGTGTTGCA+AGG | - | tig0021435:18446-18465 | Msa1391440:CDS | 50.0% | |
| GCAAGTTGCTAGCCATTTGC+AGG | - | tig0021435:18783-18802 | Msa1391440:intron | 50.0% | |
| GCACAACCTCCATCGGAATA+TGG | - | tig0021435:19210-19229 | Msa1391440:CDS | 50.0% | |
| ACTTCCCAGCCAATTCCCAG+AGG | - | tig0021435:17841-17860 | Msa1391440:CDS | 55.0% | |
| ACTTCCCAGCCAATTCCCAG+AGG | - | tig0021435:17841-17860 | Msa1391440:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021435 | gene | 17815 | 19245 | 17815 | ID=Msa1391440;Name=Msa1391440 |
| tig0021435 | mRNA | 17815 | 19245 | 17815 | ID=Msa1391440-mRNA-1;Parent=Msa1391440;Name=Msa1391440-mRNA-1;_AED=0.21;_eAED=0.34;_QI=0|0|0|1|1|1|5|0|326 |
| tig0021435 | exon | 19116 | 19245 | 19116 | ID=Msa1391440-mRNA-1:exon:12732;Parent=Msa1391440-mRNA-1 |
| tig0021435 | exon | 18831 | 18983 | 18831 | ID=Msa1391440-mRNA-1:exon:12731;Parent=Msa1391440-mRNA-1 |
| tig0021435 | exon | 18441 | 18713 | 18441 | ID=Msa1391440-mRNA-1:exon:12730;Parent=Msa1391440-mRNA-1 |
| tig0021435 | exon | 18256 | 18332 | 18256 | ID=Msa1391440-mRNA-1:exon:12729;Parent=Msa1391440-mRNA-1 |
| tig0021435 | exon | 17815 | 18162 | 17815 | ID=Msa1391440-mRNA-1:exon:12728;Parent=Msa1391440-mRNA-1 |
| tig0021435 | CDS | 19116 | 19245 | 19116 | ID=Msa1391440-mRNA-1:cds;Parent=Msa1391440-mRNA-1 |
| tig0021435 | CDS | 18831 | 18983 | 18831 | ID=Msa1391440-mRNA-1:cds;Parent=Msa1391440-mRNA-1 |
| tig0021435 | CDS | 18441 | 18713 | 18441 | ID=Msa1391440-mRNA-1:cds;Parent=Msa1391440-mRNA-1 |
| tig0021435 | CDS | 18256 | 18332 | 18256 | ID=Msa1391440-mRNA-1:cds;Parent=Msa1391440-mRNA-1 |
| tig0021435 | CDS | 17815 | 18162 | 17815 | ID=Msa1391440-mRNA-1:cds;Parent=Msa1391440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
