AlfalfaGEDB | Msa1391790

M. sativa cultivar zhongmu-4 / Msa1391790

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1391790	XP_013463444.1	86.127	519	11	5	17	476	943	1459	0.0	882

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1391790	sp\|Q8RWW0\|ALE2_ARATH	48.333	540	184	15	1	472	216	728	8.43e-130	396

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1391790	A0A072V616	86.127	519	11	5	17	476	943	1459	0.0	882

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1391790	MtrunA17_Chr2g0299301	86.127	519	11	5	17	476	931	1447	0.0	882
Msa1391790	MtrunA17_Chr4g0071221	62.548	518	108	9	17	472	408	901	0.0	577
Msa1391790	MtrunA17_Chr8g0342071	51.737	547	179	10	1	476	304	836	1.91e-154	460
Msa1391790	MtrunA17_Chr7g0262521	48.634	549	184	15	1	473	211	737	5.77e-128	389
Msa1391790	MtrunA17_Chr1g0183041	45.996	537	186	13	2	456	215	729	6.22e-118	363
Msa1391790	MtrunA17_Chr1g0194541	44.020	393	140	7	55	389	226	596	1.16e-90	288
Msa1391790	MtrunA17_Chr7g0270121	44.221	398	140	9	50	389	312	685	3.51e-90	290
Msa1391790	MtrunA17_Chr2g0320111	44.373	311	115	3	128	380	78	388	2.75e-75	242
Msa1391790	MtrunA17_Chr1g0213991	43.730	311	120	4	126	382	81	390	3.17e-75	244
Msa1391790	MtrunA17_Chr2g0286281	42.722	316	125	4	126	387	73	386	2.44e-70	232

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1391790	AT5G56890.1	57.116	541	148	11	1	472	577	1102	3.53e-174	519
Msa1391790	AT2G20300.1	48.333	540	184	15	1	472	216	728	8.57e-131	396
Msa1391790	AT4G02010.1	44.643	392	136	9	58	389	316	686	1.53e-86	280
Msa1391790	AT5G13160.1	40.212	378	157	8	126	436	70	445	2.43e-75	244
Msa1391790	AT5G18610.1	41.818	330	133	4	93	368	39	363	4.28e-73	239
Msa1391790	AT5G18610.2	41.818	330	133	4	93	368	39	363	4.28e-73	239
Msa1391790	AT5G18610.3	41.818	330	133	4	93	368	39	363	4.28e-73	239
Msa1391790	AT3G20530.1	42.712	295	114	3	126	365	66	360	1.87e-70	229
Msa1391790	AT1G61860.1	41.456	316	130	4	128	388	71	386	2.12e-69	226
Msa1391790	AT3G58690.1	42.581	310	121	4	128	380	73	382	3.77e-69	226

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Find 112 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGACGATCCGAAACCTC+TGG	0.538367	tig0021448:+24950	None:intergenic
AAATGGCTTTGGAAATTATC+TGG	0.314430	tig0021448:+24800	None:intergenic
AAATTTAAGTACCATGTAAA+TGG	0.229988	tig0021448:+26225	None:intergenic
AACTCCAAAATCGTAGTTGG+AGG	0.535511	tig0021448:+24772	None:intergenic
AAGAGATGAAAGAGCAATAA+TGG	0.364447	tig0021448:+26844	None:intergenic
AAGAGTGATGTATACAGCTA+TGG	0.622270	tig0021448:-25175	Msa1391790:CDS
AAGTCCACATGTCATACATA+GGG	0.579145	tig0021448:-25854	Msa1391790:CDS
AAGTCCCTATGTATGACATG+TGG	0.690447	tig0021448:+25850	None:intergenic
AATTTAAGTACCATGTAAAT+GGG	0.470095	tig0021448:+26226	None:intergenic
ACAAGATTCTCTTGACCAGG+CGG	0.678516	tig0021448:+25100	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGTTATATATAAGCTATCC+AGG	-	tig0021448:24585-24604	Msa1391790:CDS	30.0%
TGTTGCCATTATTTGTATAC+GGG	+	tig0021448:24751-24770	None:intergenic	30.0%
AAGAGATGAAAGAGCAATAA+TGG	+	tig0021448:24852-24871	None:intergenic	30.0%
GTACCTGTTAATCACATATT+TGG	+	tig0021448:25073-25092	None:intergenic	30.0%
TCAACTTCACCAAATTTCTA+TGG	+	tig0021448:25378-25397	None:intergenic	30.0%
TGAGTTCATAAACTAGACAT+CGG	+	tig0021448:25426-25445	None:intergenic	30.0%
GTTTATGAACTCATTCCAAA+TGG	-	tig0021448:25433-25452	Msa1391790:intron	30.0%
AATCCAAAGTCAGATACTTT+CGG	+	tig0021448:25906-25925	None:intergenic	30.0%
ATTGCAATGAGATAAATAGG+TGG	-	tig0021448:26114-26133	Msa1391790:intron	30.0%
AATTACCATGTCAGTAGAAA+GGG	+	tig0021448:26428-26447	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021448	gene	24580	27135	24580	ID=Msa1391790;Name=Msa1391790
tig0021448	mRNA	24580	27135	24580	ID=Msa1391790-mRNA-1;Parent=Msa1391790;Name=Msa1391790-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0\|0.28\|0\|1\|0.28\|0.25\|8\|0\|476
tig0021448	exon	27131	27135	27131	ID=Msa1391790-mRNA-1:exon:12925;Parent=Msa1391790-mRNA-1
tig0021448	exon	27109	27116	27109	ID=Msa1391790-mRNA-1:exon:12924;Parent=Msa1391790-mRNA-1
tig0021448	exon	26817	27022	26817	ID=Msa1391790-mRNA-1:exon:12923;Parent=Msa1391790-mRNA-1
tig0021448	exon	26723	26798	26723	ID=Msa1391790-mRNA-1:exon:12922;Parent=Msa1391790-mRNA-1
tig0021448	exon	26447	26626	26447	ID=Msa1391790-mRNA-1:exon:12921;Parent=Msa1391790-mRNA-1
tig0021448	exon	26237	26434	26237	ID=Msa1391790-mRNA-1:exon:12920;Parent=Msa1391790-mRNA-1
tig0021448	exon	25807	25919	25807	ID=Msa1391790-mRNA-1:exon:12919;Parent=Msa1391790-mRNA-1
tig0021448	exon	24580	25224	24580	ID=Msa1391790-mRNA-1:exon:12918;Parent=Msa1391790-mRNA-1
tig0021448	CDS	27131	27135	27131	ID=Msa1391790-mRNA-1:cds;Parent=Msa1391790-mRNA-1
tig0021448	CDS	27109	27116	27109	ID=Msa1391790-mRNA-1:cds;Parent=Msa1391790-mRNA-1
tig0021448	CDS	26817	27022	26817	ID=Msa1391790-mRNA-1:cds;Parent=Msa1391790-mRNA-1
tig0021448	CDS	26723	26798	26723	ID=Msa1391790-mRNA-1:cds;Parent=Msa1391790-mRNA-1
tig0021448	CDS	26447	26626	26447	ID=Msa1391790-mRNA-1:cds;Parent=Msa1391790-mRNA-1
tig0021448	CDS	26237	26434	26237	ID=Msa1391790-mRNA-1:cds;Parent=Msa1391790-mRNA-1
tig0021448	CDS	25807	25919	25807	ID=Msa1391790-mRNA-1:cds;Parent=Msa1391790-mRNA-1
tig0021448	CDS	24580	25224	24580	ID=Msa1391790-mRNA-1:cds;Parent=Msa1391790-mRNA-1

Gene Sequence

>Msa1391790

ATGAACTATCCAGGCTTACCTCCATCTCCTCCATTACCACCTTCAAGCGTTAACATGATAGATGGTGGCCCGTATACAAATAATGGCAACAATGGTAGGACAATAAAGCCTCTTGGGGTTGACATACAGAAGAGGCCGCATAAAAGTGGACTTAGCAAGGGCATTATAGCCATTATTGCTCTTTCATCTCTTCTAGCAATTGTTTTATGCTCTGCCGCTTTCAGAGATCATGTTCCTGAGTCTCAACCAACATCAACCCCACGGGTTTATCCGCCATCTCTTAACAAAACACCAGGTACTGCTGGACCATCAAATGGAGGTGCAGTTGCTTCAGCTTCAACGTCATTTCGATCTAGCATTGCTGCTTACGCAGGATCTGCTAAGACTTTTAGTATGAACGAAATAGAGAAAGCAACTGATAATTTTCACCCTTCTAGAATACTTGGAGAAGGAGGTTTTGGTCTCGTTTATAGCGATGGGTCAAAAGTAGCCTTCAAAGTTCTAAAGAGGGAGGATCATCATGGTGATCGTGAATTCTTATCTGAAGTTGAGATGCTTAGCCGTCTTCACCATAGAAATTTGGTGAAGTTGATCGGTATATGTACAGAACTCAGCTTCCGATGTCTAGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGCACTTGGTGCTGCTCGTGGTCTCGCTTATCTGCATGAAGATTCAAGTCCACATGTCATACATAGGGACTTCAAATCTAGCAATATATTATTGGAAAATGATTTTACACCGAAATACGCAATGACAGGACATCTTCTCGTGAAGAGTGATGTATACAGCTATGGTGTTGTCCTTCTTGAGCTTTTGACAGGAAGAAAACCAGTGGACTTTTCACAACCGCCTGGTCAAGAGAATCTTGTTGCATGGGCTCGTCCACTCCTAACAAGCAGAGAAGGACTCGAAGTAATAATTGATCCATCTCTAGGAAGTAATGTGCCTTTTGATAGTGTAGCTAAAGTTGCAGCCATTGCTTCAATGTGTGTACAGCCAGAGGTTTCGGATCGTCCTTTCATGGGCGAGGTTGTTCAGGCTTTGAAACTCGTGTGTAATGAATGTGATGAAGCAAAAGAAGCCGGTTCAACAAGTTCTAACAAGGACGGTTCATCTTCTGATTTCTATACTGTTACTGAACAACTACCAGATAATTTCCAAAGCCATTTCGCAGCCTCCAACTACGATTTTGGAGTTGATATCGAAAATGGCTTGTCAACATCAGAAATATTCAGCTCATCGGCAAGATTTGAAAGGCAAGCATCTGGATCATTTAGAAGACATTCATATTCAGGTCCTCTAAGAACCGGAAGAAGCAAACGGTTATGGCATATAATTCGAAAGCTTTCCGGCGGTAGTGTCAGTGAACACGGAGATTCGTTAAGGTAA

Protein sequence

>Msa1391790

MNYPGLPPSPPLPPSSVNMIDGGPYTNNGNNGRTIKPLGVDIQKRPHKSGLSKGIIAIIALSSLLAIVLCSAAFRDHVPESQPTSTPRVYPPSLNKTPGTAGPSNGGAVASASTSFRSSIAAYAGSAKTFSMNEIEKATDNFHPSRILGEGGFGLVYSDGSKVAFKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICTELSFRCLVYELIPNGSVESHLHALGAARGLAYLHEDSSPHVIHRDFKSSNILLENDFTPKYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDFSQPPGQENLVAWARPLLTSREGLEVIIDPSLGSNVPFDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEAKEAGSTSSNKDGSSSDFYTVTEQLPDNFQSHFAASNYDFGVDIENGLSTSEIFSSSARFERQASGSFRRHSYSGPLRTGRSKRLWHIIRKLSGGSVSEHGDSLR*