Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392520 | GAU12310.1 | 67.493 | 726 | 195 | 4 | 31 | 715 | 78 | 803 | 0.0 | 985 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392520 | sp|Q9SZL8|FRS5_ARATH | 33.761 | 702 | 402 | 10 | 41 | 694 | 70 | 756 | 5.09e-134 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392520 | A0A2K3L9Y4 | 61.254 | 702 | 222 | 8 | 48 | 709 | 1 | 692 | 0.0 | 866 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1392520 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392520 | MtrunA17_Chr5g0448761 | 36.672 | 649 | 354 | 9 | 38 | 634 | 54 | 697 | 2.93e-142 | 436 |
| Msa1392520 | MtrunA17_Chr1g0202341 | 38.313 | 569 | 295 | 7 | 42 | 563 | 49 | 608 | 1.92e-134 | 412 |
| Msa1392520 | MtrunA17_Chr5g0448511 | 41.505 | 412 | 240 | 1 | 215 | 625 | 48 | 459 | 2.04e-116 | 361 |
| Msa1392520 | MtrunA17_Chr2g0296781 | 34.104 | 692 | 353 | 19 | 48 | 674 | 1 | 654 | 1.32e-104 | 336 |
| Msa1392520 | MtrunA17_Chr3g0080351 | 34.000 | 600 | 348 | 15 | 10 | 570 | 39 | 629 | 7.72e-101 | 328 |
| Msa1392520 | MtrunA17_Chr3g0118611 | 44.699 | 349 | 191 | 1 | 215 | 563 | 154 | 500 | 6.14e-99 | 322 |
| Msa1392520 | MtrunA17_Chr5g0441581 | 35.614 | 570 | 296 | 10 | 44 | 562 | 32 | 581 | 4.37e-98 | 317 |
| Msa1392520 | MtrunA17_Chr5g0440451 | 43.454 | 359 | 198 | 2 | 215 | 570 | 257 | 613 | 2.31e-97 | 322 |
| Msa1392520 | MtrunA17_Chr1g0207551 | 35.652 | 575 | 305 | 13 | 41 | 565 | 31 | 590 | 1.07e-96 | 317 |
| Msa1392520 | MtrunA17_Chr2g0329031 | 29.722 | 720 | 407 | 21 | 43 | 706 | 13 | 689 | 1.07e-92 | 304 |
| Msa1392520 | MtrunA17_Chr6g0477261 | 33.913 | 575 | 291 | 12 | 166 | 679 | 2 | 548 | 1.76e-91 | 299 |
| Msa1392520 | MtrunA17_Chr2g0287061 | 33.159 | 573 | 311 | 16 | 42 | 579 | 181 | 716 | 3.78e-88 | 294 |
| Msa1392520 | MtrunA17_Chr3g0082121 | 32.367 | 621 | 354 | 17 | 44 | 617 | 43 | 644 | 6.47e-85 | 283 |
| Msa1392520 | MtrunA17_Chr1g0196541 | 34.215 | 567 | 306 | 13 | 48 | 561 | 1 | 553 | 7.01e-85 | 283 |
| Msa1392520 | MtrunA17_Chr1g0198761 | 28.807 | 788 | 445 | 26 | 5 | 723 | 6 | 746 | 1.64e-84 | 283 |
| Msa1392520 | MtrunA17_Chr8g0363841 | 31.217 | 567 | 330 | 10 | 51 | 567 | 24 | 580 | 1.51e-81 | 273 |
| Msa1392520 | MtrunA17_Chr2g0291581 | 32.465 | 576 | 305 | 15 | 44 | 562 | 71 | 619 | 6.13e-79 | 266 |
| Msa1392520 | MtrunA17_Chr2g0324011 | 28.497 | 572 | 353 | 7 | 44 | 568 | 10 | 572 | 1.38e-77 | 260 |
| Msa1392520 | MtrunA17_Chr2g0276841 | 27.560 | 664 | 399 | 15 | 20 | 623 | 41 | 682 | 4.08e-75 | 256 |
| Msa1392520 | MtrunA17_Chr1g0203051 | 28.643 | 597 | 367 | 11 | 3 | 552 | 38 | 622 | 7.93e-75 | 254 |
| Msa1392520 | MtrunA17_Chr6g0458391 | 30.303 | 594 | 365 | 18 | 10 | 565 | 184 | 766 | 1.50e-73 | 253 |
| Msa1392520 | MtrunA17_Chr2g0287651 | 26.941 | 657 | 410 | 12 | 43 | 648 | 74 | 711 | 1.29e-71 | 250 |
| Msa1392520 | MtrunA17_Chr1g0203721 | 27.314 | 659 | 412 | 14 | 46 | 648 | 65 | 712 | 7.18e-69 | 243 |
| Msa1392520 | MtrunA17_Chr2g0294841 | 24.870 | 768 | 496 | 20 | 1 | 710 | 1 | 745 | 9.76e-69 | 240 |
| Msa1392520 | MtrunA17_Chr2g0291591 | 31.485 | 505 | 284 | 10 | 44 | 500 | 64 | 554 | 1.27e-67 | 233 |
| Msa1392520 | MtrunA17_Chr2g0290391 | 25.502 | 647 | 397 | 19 | 42 | 625 | 49 | 673 | 1.85e-54 | 199 |
| Msa1392520 | MtrunA17_Chr5g0431001 | 29.638 | 442 | 242 | 12 | 41 | 421 | 55 | 488 | 5.22e-50 | 182 |
| Msa1392520 | MtrunA17_Chr1g0164591 | 31.949 | 313 | 172 | 3 | 122 | 398 | 1 | 308 | 3.22e-46 | 167 |
| Msa1392520 | MtrunA17_Chr7g0258861 | 28.383 | 303 | 160 | 7 | 41 | 293 | 5 | 300 | 6.21e-29 | 117 |
| Msa1392520 | MtrunA17_Chr2g0308841 | 27.948 | 229 | 162 | 2 | 342 | 568 | 4 | 231 | 4.08e-24 | 102 |
| Msa1392520 | MtrunA17_Chr1g0149131 | 39.091 | 110 | 67 | 0 | 284 | 393 | 1 | 110 | 2.02e-22 | 93.2 |
| Msa1392520 | MtrunA17_Chr2g0289081 | 51.282 | 78 | 36 | 1 | 37 | 112 | 57 | 134 | 1.74e-19 | 85.5 |
| Msa1392520 | MtrunA17_Chr6g0455001 | 21.371 | 496 | 266 | 18 | 230 | 711 | 19 | 404 | 6.87e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392520 | AT4G38180.1 | 33.761 | 702 | 402 | 10 | 41 | 694 | 70 | 756 | 5.17e-135 | 417 |
| Msa1392520 | AT2G27110.2 | 33.898 | 590 | 323 | 13 | 11 | 563 | 19 | 578 | 2.97e-105 | 341 |
| Msa1392520 | AT2G27110.1 | 33.898 | 590 | 323 | 13 | 11 | 563 | 19 | 578 | 2.97e-105 | 341 |
| Msa1392520 | AT4G38170.1 | 38.780 | 410 | 245 | 3 | 215 | 621 | 49 | 455 | 1.02e-101 | 323 |
| Msa1392520 | AT4G15090.1 | 34.518 | 591 | 313 | 13 | 33 | 570 | 46 | 615 | 1.45e-100 | 328 |
| Msa1392520 | AT4G15090.5 | 34.518 | 591 | 313 | 13 | 33 | 570 | 46 | 615 | 1.45e-100 | 328 |
| Msa1392520 | AT4G15090.3 | 34.518 | 591 | 313 | 13 | 33 | 570 | 46 | 615 | 1.45e-100 | 328 |
| Msa1392520 | AT4G15090.2 | 34.518 | 591 | 313 | 13 | 33 | 570 | 46 | 615 | 1.45e-100 | 328 |
| Msa1392520 | AT4G15090.4 | 34.518 | 591 | 313 | 13 | 33 | 570 | 46 | 615 | 1.45e-100 | 328 |
| Msa1392520 | AT2G27110.3 | 42.980 | 349 | 197 | 1 | 215 | 563 | 87 | 433 | 2.91e-100 | 324 |
| Msa1392520 | AT3G22170.2 | 33.274 | 559 | 335 | 10 | 38 | 563 | 64 | 617 | 4.23e-96 | 316 |
| Msa1392520 | AT3G22170.1 | 33.274 | 559 | 335 | 10 | 38 | 563 | 64 | 617 | 4.23e-96 | 316 |
| Msa1392520 | AT2G32250.8 | 32.197 | 528 | 331 | 8 | 48 | 564 | 1 | 512 | 1.41e-87 | 291 |
| Msa1392520 | AT2G32250.5 | 32.197 | 528 | 331 | 8 | 48 | 564 | 42 | 553 | 1.55e-87 | 291 |
| Msa1392520 | AT2G32250.7 | 32.197 | 528 | 331 | 8 | 48 | 564 | 1 | 512 | 1.94e-87 | 291 |
| Msa1392520 | AT2G32250.6 | 32.197 | 528 | 331 | 8 | 48 | 564 | 42 | 553 | 2.54e-87 | 292 |
| Msa1392520 | AT2G32250.1 | 32.197 | 528 | 331 | 8 | 48 | 564 | 42 | 553 | 2.54e-87 | 292 |
| Msa1392520 | AT2G32250.3 | 32.197 | 528 | 331 | 8 | 48 | 564 | 42 | 553 | 2.54e-87 | 292 |
| Msa1392520 | AT2G32250.2 | 32.197 | 528 | 331 | 8 | 48 | 564 | 42 | 553 | 2.54e-87 | 292 |
| Msa1392520 | AT2G32250.4 | 32.197 | 528 | 331 | 8 | 48 | 564 | 42 | 553 | 2.54e-87 | 292 |
| Msa1392520 | AT3G06250.2 | 31.670 | 581 | 325 | 14 | 43 | 593 | 189 | 727 | 1.00e-85 | 286 |
| Msa1392520 | AT3G06250.1 | 31.670 | 581 | 325 | 14 | 43 | 593 | 189 | 727 | 1.00e-85 | 286 |
| Msa1392520 | AT3G06250.3 | 31.670 | 581 | 325 | 14 | 43 | 593 | 189 | 727 | 1.00e-85 | 286 |
| Msa1392520 | AT5G18960.2 | 31.754 | 570 | 298 | 12 | 43 | 568 | 210 | 732 | 1.92e-84 | 284 |
| Msa1392520 | AT5G18960.1 | 31.754 | 570 | 298 | 12 | 43 | 568 | 210 | 732 | 1.92e-84 | 284 |
| Msa1392520 | AT1G76320.3 | 31.139 | 562 | 322 | 10 | 48 | 563 | 1 | 543 | 7.48e-83 | 276 |
| Msa1392520 | AT1G76320.1 | 31.317 | 562 | 321 | 11 | 48 | 563 | 1 | 543 | 1.23e-82 | 278 |
| Msa1392520 | AT1G76320.4 | 31.317 | 562 | 321 | 11 | 48 | 563 | 1 | 543 | 1.23e-82 | 278 |
| Msa1392520 | AT1G76320.2 | 31.317 | 562 | 321 | 11 | 48 | 563 | 1 | 543 | 1.25e-82 | 278 |
| Msa1392520 | AT4G19990.5 | 33.034 | 557 | 337 | 13 | 34 | 563 | 11 | 558 | 1.43e-80 | 273 |
| Msa1392520 | AT4G19990.3 | 33.034 | 557 | 337 | 13 | 34 | 563 | 11 | 558 | 1.83e-80 | 272 |
| Msa1392520 | AT4G19990.4 | 33.034 | 557 | 337 | 13 | 34 | 563 | 11 | 558 | 1.83e-80 | 272 |
| Msa1392520 | AT4G19990.6 | 33.034 | 557 | 337 | 13 | 34 | 563 | 11 | 558 | 3.10e-80 | 272 |
| Msa1392520 | AT4G19990.2 | 33.034 | 557 | 337 | 13 | 34 | 563 | 11 | 558 | 3.10e-80 | 272 |
| Msa1392520 | AT4G19990.7 | 33.034 | 557 | 337 | 13 | 34 | 563 | 25 | 572 | 3.79e-80 | 271 |
| Msa1392520 | AT4G19990.1 | 33.932 | 501 | 302 | 11 | 83 | 563 | 10 | 501 | 2.46e-77 | 263 |
| Msa1392520 | AT1G52520.1 | 30.277 | 578 | 339 | 17 | 34 | 562 | 74 | 636 | 2.40e-73 | 252 |
| Msa1392520 | AT1G80010.1 | 35.112 | 356 | 218 | 6 | 217 | 563 | 309 | 660 | 8.87e-68 | 237 |
| Msa1392520 | AT1G10240.2 | 26.833 | 600 | 360 | 13 | 21 | 561 | 25 | 604 | 2.41e-66 | 232 |
| Msa1392520 | AT1G10240.1 | 26.833 | 600 | 360 | 13 | 21 | 561 | 25 | 604 | 2.41e-66 | 232 |
| Msa1392520 | AT5G28530.3 | 23.981 | 638 | 405 | 15 | 44 | 623 | 55 | 670 | 1.92e-51 | 191 |
| Msa1392520 | AT5G28530.2 | 23.981 | 638 | 405 | 15 | 44 | 623 | 55 | 670 | 1.92e-51 | 191 |
| Msa1392520 | AT5G28530.1 | 24.100 | 639 | 407 | 15 | 44 | 623 | 55 | 674 | 3.51e-51 | 190 |
| Msa1392520 | AT5G28530.5 | 23.737 | 594 | 398 | 15 | 44 | 623 | 55 | 607 | 3.04e-43 | 166 |
| Msa1392520 | AT5G28530.4 | 23.737 | 594 | 402 | 15 | 44 | 623 | 55 | 611 | 6.93e-43 | 165 |
Find 83 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCAGCATTTGATTT+TGG | 0.146038 | tig0021514:-72252 | None:intergenic |
| TTGTCAACTTTATGAATTTA+TGG | 0.151879 | tig0021514:+74044 | Msa1392520:CDS |
| AATCATATTTAACCATTATT+TGG | 0.161348 | tig0021514:-73552 | None:intergenic |
| AAACATCTTTAAGAAGTTTC+AGG | 0.189455 | tig0021514:+73876 | Msa1392520:CDS |
| CCTTTAGTTTGTGCCATTAT+CGG | 0.234963 | tig0021514:-74444 | None:intergenic |
| AGGTTGGCCTATAATTATTT+TGG | 0.238068 | tig0021514:+73130 | Msa1392520:CDS |
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | tig0021514:+72491 | Msa1392520:CDS |
| TTCATTAATACCACATATAA+TGG | 0.245994 | tig0021514:-74169 | None:intergenic |
| CATAAACGATGTCGAGTATT+AGG | 0.247115 | tig0021514:-73397 | None:intergenic |
| ATGCCATTTGCGCCATTTAC+TGG | 0.253410 | tig0021514:+73199 | Msa1392520:CDS |
| TCTTTCGGAGTCCATCATTC+TGG | 0.292595 | tig0021514:-74337 | None:intergenic |
| AATAATGGTTAAATATGATT+TGG | 0.302795 | tig0021514:+73555 | Msa1392520:CDS |
| TGATGATTCAATCCAGTAAA+TGG | 0.305923 | tig0021514:-73211 | None:intergenic |
| GCAATACAATCACAGTAAAA+AGG | 0.311417 | tig0021514:+72667 | Msa1392520:CDS |
| AACTCAGCTTCTTCAGTTGT+TGG | 0.313522 | tig0021514:-74408 | None:intergenic |
| CCAAGAGTATAAACTATCTT+AGG | 0.313740 | tig0021514:+72814 | Msa1392520:CDS |
| AAATGTAATGATAGTCCATT+TGG | 0.314496 | tig0021514:-72760 | None:intergenic |
| CGCTTTAAAATATATTCATT+TGG | 0.317378 | tig0021514:-74123 | None:intergenic |
| CTCGACATCGTTTATGTTTG+TGG | 0.319764 | tig0021514:+73404 | Msa1392520:CDS |
| CAAAGCACAACCGAATAAAA+TGG | 0.321919 | tig0021514:-73242 | None:intergenic |
| AACATCTCCAAAATAATTAT+AGG | 0.322792 | tig0021514:-73137 | None:intergenic |
| CCTAAGATAGTTTATACTCT+TGG | 0.340102 | tig0021514:-72814 | None:intergenic |
| TGTCAACTTTATGAATTTAT+GGG | 0.343627 | tig0021514:+74045 | Msa1392520:CDS |
| CTAAGATAGTTTATACTCTT+GGG | 0.346829 | tig0021514:-72813 | None:intergenic |
| GCTTGAAAAGATCATCAAAA+AGG | 0.372423 | tig0021514:+74314 | Msa1392520:CDS |
| AAGGTCTTCATATTATAAAT+AGG | 0.380706 | tig0021514:-73628 | None:intergenic |
| TGAAACTCTAGTTTGTCTTT+CGG | 0.388167 | tig0021514:-74352 | None:intergenic |
| GGAAGATTGGCACCAAATAA+TGG | 0.388470 | tig0021514:+73540 | Msa1392520:CDS |
| TGATCTGTAATTATTGAAAC+AGG | 0.395118 | tig0021514:-73337 | None:intergenic |
| ATTATGCAGACATATCTTGA+TGG | 0.397243 | tig0021514:+74071 | Msa1392520:CDS |
| ATAAAGTTGACAACCACATT+TGG | 0.431711 | tig0021514:-74034 | None:intergenic |
| AATGTTTAGCAATGAAGGTT+CGG | 0.437737 | tig0021514:+72920 | Msa1392520:CDS |
| TTACATGGTTGTTTGAAACT+TGG | 0.443448 | tig0021514:+73290 | Msa1392520:CDS |
| GCTACAATGTTTAGCAATGA+AGG | 0.444472 | tig0021514:+72915 | Msa1392520:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | tig0021514:+72704 | Msa1392520:CDS |
| CTCTAATTTCATACAAACCT+TGG | 0.445596 | tig0021514:-73594 | None:intergenic |
| CTTTCTCTGATAGAGATTGT+TGG | 0.446604 | tig0021514:+72943 | Msa1392520:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | tig0021514:+72612 | Msa1392520:CDS |
| CAATATTCAAGATCCGATAA+TGG | 0.465564 | tig0021514:+74431 | Msa1392520:CDS |
| AATCCAGTAAATGGCGCAAA+TGG | 0.467392 | tig0021514:-73202 | None:intergenic |
| ATTTGGCAGCCCTTGTATCA+AGG | 0.469613 | tig0021514:-74017 | None:intergenic |
| GTTGTTTGAAACTTGGCTAA+TGG | 0.473673 | tig0021514:+73297 | Msa1392520:CDS |
| GTATATGTGTGAAAGCTTCT+CGG | 0.475731 | tig0021514:-73446 | None:intergenic |
| TGAACATCTAAGTCATGCTC+AGG | 0.476339 | tig0021514:-72456 | None:intergenic |
| TGCTTTGTTGCAAGATGAAA+CGG | 0.477209 | tig0021514:+73258 | Msa1392520:CDS |
| AATAATTACAGATCAAGATA+AGG | 0.482617 | tig0021514:+73345 | Msa1392520:CDS |
| TGGAAGAATCAAAAGCGGTC+TGG | 0.495399 | tig0021514:+74500 | Msa1392520:CDS |
| GATCAAGAGGGCTTGCCTAC+CGG | 0.495549 | tig0021514:+72885 | Msa1392520:CDS |
| CCGATAATGGCACAAACTAA+AGG | 0.499113 | tig0021514:+74444 | Msa1392520:CDS |
| AATGTAATGATAGTCCATTT+GGG | 0.500833 | tig0021514:-72759 | None:intergenic |
| AGAAGAACATGTCAAATATG+TGG | 0.508664 | tig0021514:+74552 | Msa1392520:CDS |
| GGTCAGATAATAAACTTGCT+TGG | 0.514870 | tig0021514:-74251 | None:intergenic |
| GCTAATATTGCCATTATATG+TGG | 0.517269 | tig0021514:+74159 | Msa1392520:CDS |
| GGTTGATGCAAGGTCGAGGT+TGG | 0.522198 | tig0021514:+73114 | Msa1392520:intron |
| ACAAACTAAAGGAAGACAAA+AGG | 0.527619 | tig0021514:+74455 | Msa1392520:CDS |
| TGTCAAATATGTGGAGAAGA+AGG | 0.528520 | tig0021514:+74561 | Msa1392520:CDS |
| TGTCATTACTATCAACATGT+TGG | 0.533945 | tig0021514:-72635 | None:intergenic |
| TTTATGTGGACCTTGATACA+AGG | 0.535609 | tig0021514:+74007 | Msa1392520:CDS |
| TGAAACTTGGCTAATGGCAA+TGG | 0.547020 | tig0021514:+73303 | Msa1392520:CDS |
| GAAACTTGGCTAATGGCAAT+GGG | 0.548907 | tig0021514:+73304 | Msa1392520:CDS |
| AGAGTCATATACTGTTTATG+TGG | 0.549358 | tig0021514:+73993 | Msa1392520:CDS |
| AAAGGTTAGCCACTTCATCA+AGG | 0.553222 | tig0021514:+73909 | Msa1392520:CDS |
| TCATAACATGGAGGACATAG+AGG | 0.553789 | tig0021514:+72278 | Msa1392520:CDS |
| AGTTGAACAGTTTGATCAAG+AGG | 0.557965 | tig0021514:+72872 | Msa1392520:CDS |
| TAAGATAGTTTATACTCTTG+GGG | 0.560800 | tig0021514:-72812 | None:intergenic |
| TGTATGAAATTAGAGAGTCA+TGG | 0.568726 | tig0021514:+73602 | Msa1392520:CDS |
| GATGTGCGGAGCAATATCTA+AGG | 0.574383 | tig0021514:+73369 | Msa1392520:CDS |
| GTTGAACAGTTTGATCAAGA+GGG | 0.578599 | tig0021514:+72873 | Msa1392520:CDS |
| GTTTCAGGACGAGCTTGCAA+AGG | 0.593760 | tig0021514:+73891 | Msa1392520:CDS |
| AATGCTCGAGTTTCTCAACC+TGG | 0.593762 | tig0021514:+74480 | Msa1392520:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | tig0021514:+72785 | Msa1392520:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | tig0021514:-72498 | None:intergenic |
| AGTAAAGTTTGACAAAGCAG+TGG | 0.629642 | tig0021514:+73744 | Msa1392520:CDS |
| GATACAAGGGCTGCCAAATG+TGG | 0.650490 | tig0021514:+74021 | Msa1392520:CDS |
| TTATGTGGACCTTGATACAA+GGG | 0.662546 | tig0021514:+74008 | Msa1392520:CDS |
| GATCAAGATAAGGCGATGTG+CGG | 0.663194 | tig0021514:+73355 | Msa1392520:CDS |
| GAACATCTAAGTCATGCTCA+GGG | 0.664893 | tig0021514:-72455 | None:intergenic |
| CAACCTGGAAGAATCAAAAG+CGG | 0.677260 | tig0021514:+74495 | Msa1392520:CDS |
| TGAAGAAGATAGTCATAACA+TGG | 0.681121 | tig0021514:+72266 | Msa1392520:CDS |
| ACTTGGCTAATGGCAATGGG+TGG | 0.693217 | tig0021514:+73307 | Msa1392520:CDS |
| TACTACGAAATCTCGCAGTG+TGG | 0.701060 | tig0021514:-73725 | None:intergenic |
| AGAAGATAGTCATAACATGG+AGG | 0.748276 | tig0021514:+72269 | Msa1392520:CDS |
| CTGGGATGAATACAACACAG+AGG | 0.795926 | tig0021514:+73656 | Msa1392520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+GGG | + | tig0021514:73093-73112 | Msa1392520:intron | 10.0% |
| !!! | ATAGAATGATTAATTTTTTT+GGG | + | tig0021514:73093-73112 | Msa1392520:intron | 10.0% |
| !!! | GATAGAATGATTAATTTTTT+TGG | + | tig0021514:73092-73111 | Msa1392520:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | tig0021514:73555-73574 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | + | tig0021514:73555-73574 | Msa1392520:CDS | 15.0% |
| !!! | GATAGAATGATTAATTTTTT+TGG | + | tig0021514:73092-73111 | Msa1392520:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | tig0021514:73555-73574 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | + | tig0021514:73555-73574 | Msa1392520:CDS | 15.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | - | tig0021514:73058-73077 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | - | tig0021514:73059-73078 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | tig0021514:73140-73159 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | tig0021514:73345-73364 | Msa1392520:CDS | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | + | tig0021514:73569-73588 | Msa1392520:CDS | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | tig0021514:73631-73650 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | + | tig0021514:74044-74063 | Msa1392520:CDS | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | + | tig0021514:74045-74064 | Msa1392520:CDS | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | tig0021514:74126-74145 | None:intergenic | 20.0% |
| !! | TTCATTAATACCACATATAA+TGG | - | tig0021514:74172-74191 | None:intergenic | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | - | tig0021514:73058-73077 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | - | tig0021514:73059-73078 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | tig0021514:73140-73159 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | tig0021514:73345-73364 | Msa1392520:CDS | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | + | tig0021514:73569-73588 | Msa1392520:CDS | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | tig0021514:73631-73650 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | + | tig0021514:74044-74063 | Msa1392520:CDS | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | + | tig0021514:74045-74064 | Msa1392520:CDS | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | tig0021514:74126-74145 | None:intergenic | 20.0% |
| !! | TTCATTAATACCACATATAA+TGG | - | tig0021514:74172-74191 | None:intergenic | 20.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | tig0021514:72491-72510 | Msa1392520:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | tig0021514:72501-72520 | None:intergenic | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | + | tig0021514:72549-72568 | Msa1392520:CDS | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | tig0021514:72555-72574 | Msa1392520:CDS | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | + | tig0021514:72736-72755 | Msa1392520:CDS | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | - | tig0021514:72762-72781 | None:intergenic | 25.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | - | tig0021514:72763-72782 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | tig0021514:72815-72834 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | tig0021514:72816-72835 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | - | tig0021514:73340-73359 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | tig0021514:73471-73490 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | + | tig0021514:73519-73538 | Msa1392520:CDS | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | + | tig0021514:73837-73856 | Msa1392520:CDS | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | tig0021514:73876-73895 | Msa1392520:CDS | 25.0% |
| !!! | ATGAATATATTTTAAAGCGC+TGG | + | tig0021514:74127-74146 | Msa1392520:CDS | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | tig0021514:72491-72510 | Msa1392520:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | tig0021514:72501-72520 | None:intergenic | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | + | tig0021514:72549-72568 | Msa1392520:CDS | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | tig0021514:72555-72574 | Msa1392520:CDS | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | + | tig0021514:72736-72755 | Msa1392520:CDS | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | - | tig0021514:72762-72781 | None:intergenic | 25.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | - | tig0021514:72763-72782 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | tig0021514:72815-72834 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | tig0021514:72816-72835 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | - | tig0021514:73340-73359 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | tig0021514:73471-73490 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | + | tig0021514:73519-73538 | Msa1392520:CDS | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | + | tig0021514:73837-73856 | Msa1392520:CDS | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | tig0021514:73876-73895 | Msa1392520:CDS | 25.0% |
| !!! | ATGAATATATTTTAAAGCGC+TGG | + | tig0021514:74127-74146 | Msa1392520:CDS | 25.0% |
| !! | TCTTCTTCAGCATTTGATTT+TGG | - | tig0021514:72255-72274 | None:intergenic | 30.0% |
| TGAAGAAGATAGTCATAACA+TGG | + | tig0021514:72266-72285 | Msa1392520:CDS | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | + | tig0021514:72612-72631 | Msa1392520:CDS | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | - | tig0021514:72638-72657 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | + | tig0021514:72667-72686 | Msa1392520:CDS | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | + | tig0021514:72704-72723 | Msa1392520:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | tig0021514:72785-72804 | Msa1392520:CDS | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | tig0021514:72817-72836 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | tig0021514:72814-72833 | Msa1392520:CDS | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | tig0021514:72830-72849 | Msa1392520:CDS | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | tig0021514:72831-72850 | Msa1392520:CDS | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | + | tig0021514:72920-72939 | Msa1392520:CDS | 30.0% | |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | - | tig0021514:72986-73005 | None:intergenic | 30.0% |
| !!! | AATTTTTTTGGGTTGATGCA+AGG | + | tig0021514:73104-73123 | Msa1392520:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | tig0021514:73130-73149 | Msa1392520:CDS | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | - | tig0021514:73214-73233 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | + | tig0021514:73232-73251 | Msa1392520:CDS | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | + | tig0021514:73290-73309 | Msa1392520:CDS | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | + | tig0021514:73527-73546 | Msa1392520:CDS | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | - | tig0021514:73597-73616 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | tig0021514:73602-73621 | Msa1392520:CDS | 30.0% | |
| !!! | AATATGAAGACCTTTTTTGC+TGG | + | tig0021514:73637-73656 | Msa1392520:CDS | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | + | tig0021514:73638-73657 | Msa1392520:CDS | 30.0% |
| AAGGACAAAATCGAGAAAAA+TGG | + | tig0021514:73928-73947 | Msa1392520:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | tig0021514:73929-73948 | Msa1392520:CDS | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | tig0021514:73993-74012 | Msa1392520:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | tig0021514:74037-74056 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | + | tig0021514:74071-74090 | Msa1392520:CDS | 30.0% | |
| GCTAATATTGCCATTATATG+TGG | + | tig0021514:74159-74178 | Msa1392520:CDS | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | tig0021514:74275-74294 | None:intergenic | 30.0% |
| GCTTGAAAAGATCATCAAAA+AGG | + | tig0021514:74314-74333 | Msa1392520:CDS | 30.0% | |
| ! | TGAAACTCTAGTTTGTCTTT+CGG | - | tig0021514:74355-74374 | None:intergenic | 30.0% |
| CAATATTCAAGATCCGATAA+TGG | + | tig0021514:74431-74450 | Msa1392520:CDS | 30.0% | |
| ACAAACTAAAGGAAGACAAA+AGG | + | tig0021514:74455-74474 | Msa1392520:CDS | 30.0% | |
| AGAAGAACATGTCAAATATG+TGG | + | tig0021514:74552-74571 | Msa1392520:CDS | 30.0% | |
| !! | TCTTCTTCAGCATTTGATTT+TGG | - | tig0021514:72255-72274 | None:intergenic | 30.0% |
| TGAAGAAGATAGTCATAACA+TGG | + | tig0021514:72266-72285 | Msa1392520:CDS | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | + | tig0021514:72612-72631 | Msa1392520:CDS | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | - | tig0021514:72638-72657 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | + | tig0021514:72667-72686 | Msa1392520:CDS | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | + | tig0021514:72704-72723 | Msa1392520:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | tig0021514:72785-72804 | Msa1392520:CDS | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | tig0021514:72817-72836 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | tig0021514:72814-72833 | Msa1392520:CDS | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | tig0021514:72830-72849 | Msa1392520:CDS | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | tig0021514:72831-72850 | Msa1392520:CDS | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | + | tig0021514:72920-72939 | Msa1392520:CDS | 30.0% | |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | - | tig0021514:72986-73005 | None:intergenic | 30.0% |
| !!! | AATTTTTTTGGGTTGATGCA+AGG | + | tig0021514:73104-73123 | Msa1392520:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | tig0021514:73130-73149 | Msa1392520:CDS | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | - | tig0021514:73214-73233 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | + | tig0021514:73232-73251 | Msa1392520:CDS | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | + | tig0021514:73290-73309 | Msa1392520:CDS | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | + | tig0021514:73527-73546 | Msa1392520:CDS | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | - | tig0021514:73597-73616 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | tig0021514:73602-73621 | Msa1392520:CDS | 30.0% | |
| !!! | AATATGAAGACCTTTTTTGC+TGG | + | tig0021514:73637-73656 | Msa1392520:CDS | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | + | tig0021514:73638-73657 | Msa1392520:CDS | 30.0% |
| AAGGACAAAATCGAGAAAAA+TGG | + | tig0021514:73928-73947 | Msa1392520:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | tig0021514:73929-73948 | Msa1392520:CDS | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | tig0021514:73993-74012 | Msa1392520:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | tig0021514:74037-74056 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | + | tig0021514:74071-74090 | Msa1392520:CDS | 30.0% | |
| GCTAATATTGCCATTATATG+TGG | + | tig0021514:74159-74178 | Msa1392520:CDS | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | tig0021514:74275-74294 | None:intergenic | 30.0% |
| GCTTGAAAAGATCATCAAAA+AGG | + | tig0021514:74314-74333 | Msa1392520:CDS | 30.0% | |
| ! | TGAAACTCTAGTTTGTCTTT+CGG | - | tig0021514:74355-74374 | None:intergenic | 30.0% |
| CAATATTCAAGATCCGATAA+TGG | + | tig0021514:74431-74450 | Msa1392520:CDS | 30.0% | |
| ACAAACTAAAGGAAGACAAA+AGG | + | tig0021514:74455-74474 | Msa1392520:CDS | 30.0% | |
| AGAAGAACATGTCAAATATG+TGG | + | tig0021514:74552-74571 | Msa1392520:CDS | 30.0% | |
| AGAAGATAGTCATAACATGG+AGG | + | tig0021514:72269-72288 | Msa1392520:CDS | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | + | tig0021514:72872-72891 | Msa1392520:CDS | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | tig0021514:72873-72892 | Msa1392520:CDS | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | - | tig0021514:72907-72926 | None:intergenic | 35.0% |
| GCTACAATGTTTAGCAATGA+AGG | + | tig0021514:72915-72934 | Msa1392520:CDS | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | + | tig0021514:72943-72962 | Msa1392520:CDS | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | + | tig0021514:72977-72996 | Msa1392520:CDS | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | + | tig0021514:72984-73003 | Msa1392520:CDS | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | - | tig0021514:73245-73264 | None:intergenic | 35.0% | |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | + | tig0021514:73258-73277 | Msa1392520:CDS | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | + | tig0021514:73275-73294 | Msa1392520:CDS | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | + | tig0021514:73297-73316 | Msa1392520:CDS | 35.0% |
| CATAAACGATGTCGAGTATT+AGG | - | tig0021514:73400-73419 | None:intergenic | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | - | tig0021514:73449-73468 | None:intergenic | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | + | tig0021514:73577-73596 | Msa1392520:CDS | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | - | tig0021514:73650-73669 | None:intergenic | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | tig0021514:73744-73763 | Msa1392520:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | tig0021514:74007-74026 | Msa1392520:CDS | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | tig0021514:74008-74027 | Msa1392520:CDS | 35.0% | |
| !!! | TATTTTAAAGCGCTGGACAA+AGG | + | tig0021514:74134-74153 | Msa1392520:CDS | 35.0% |
| ! | GGTCAGATAATAAACTTGCT+TGG | - | tig0021514:74254-74273 | None:intergenic | 35.0% |
| !! | TTGATGATCTTTTCAAGCTC+TGG | - | tig0021514:74312-74331 | None:intergenic | 35.0% |
| !! | CCTTTAGTTTGTGCCATTAT+CGG | - | tig0021514:74447-74466 | None:intergenic | 35.0% |
| TGTCAAATATGTGGAGAAGA+AGG | + | tig0021514:74561-74580 | Msa1392520:CDS | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | + | tig0021514:72269-72288 | Msa1392520:CDS | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | + | tig0021514:72872-72891 | Msa1392520:CDS | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | tig0021514:72873-72892 | Msa1392520:CDS | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | - | tig0021514:72907-72926 | None:intergenic | 35.0% |
| GCTACAATGTTTAGCAATGA+AGG | + | tig0021514:72915-72934 | Msa1392520:CDS | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | + | tig0021514:72943-72962 | Msa1392520:CDS | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | + | tig0021514:72977-72996 | Msa1392520:CDS | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | + | tig0021514:72984-73003 | Msa1392520:CDS | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | - | tig0021514:73245-73264 | None:intergenic | 35.0% | |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | + | tig0021514:73258-73277 | Msa1392520:CDS | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | + | tig0021514:73275-73294 | Msa1392520:CDS | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | + | tig0021514:73297-73316 | Msa1392520:CDS | 35.0% |
| CATAAACGATGTCGAGTATT+AGG | - | tig0021514:73400-73419 | None:intergenic | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | - | tig0021514:73449-73468 | None:intergenic | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | + | tig0021514:73577-73596 | Msa1392520:CDS | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | - | tig0021514:73650-73669 | None:intergenic | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | tig0021514:73744-73763 | Msa1392520:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | tig0021514:74007-74026 | Msa1392520:CDS | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | tig0021514:74008-74027 | Msa1392520:CDS | 35.0% | |
| !!! | TATTTTAAAGCGCTGGACAA+AGG | + | tig0021514:74134-74153 | Msa1392520:CDS | 35.0% |
| ! | GGTCAGATAATAAACTTGCT+TGG | - | tig0021514:74254-74273 | None:intergenic | 35.0% |
| !! | TTGATGATCTTTTCAAGCTC+TGG | - | tig0021514:74312-74331 | None:intergenic | 35.0% |
| !! | CCTTTAGTTTGTGCCATTAT+CGG | - | tig0021514:74447-74466 | None:intergenic | 35.0% |
| TGTCAAATATGTGGAGAAGA+AGG | + | tig0021514:74561-74580 | Msa1392520:CDS | 35.0% | |
| TCATAACATGGAGGACATAG+AGG | + | tig0021514:72278-72297 | Msa1392520:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | - | tig0021514:72458-72477 | None:intergenic | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | - | tig0021514:72459-72478 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | + | tig0021514:72745-72764 | Msa1392520:CDS | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | tig0021514:72834-72853 | Msa1392520:CDS | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | tig0021514:72835-72854 | Msa1392520:CDS | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | + | tig0021514:72836-72855 | Msa1392520:CDS | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | - | tig0021514:73205-73224 | None:intergenic | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | + | tig0021514:73303-73322 | Msa1392520:CDS | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | + | tig0021514:73304-73323 | Msa1392520:CDS | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | + | tig0021514:73404-73423 | Msa1392520:CDS | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | + | tig0021514:73540-73559 | Msa1392520:CDS | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | tig0021514:73909-73928 | Msa1392520:CDS | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | tig0021514:73921-73940 | None:intergenic | 40.0% |
| CATCAAAAAGGCCAGAATGA+TGG | + | tig0021514:74326-74345 | Msa1392520:CDS | 40.0% | |
| AACTCAGCTTCTTCAGTTGT+TGG | - | tig0021514:74411-74430 | None:intergenic | 40.0% | |
| ! | CCGATAATGGCACAAACTAA+AGG | + | tig0021514:74444-74463 | Msa1392520:CDS | 40.0% |
| CAACCTGGAAGAATCAAAAG+CGG | + | tig0021514:74495-74514 | Msa1392520:CDS | 40.0% | |
| TCATAACATGGAGGACATAG+AGG | + | tig0021514:72278-72297 | Msa1392520:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | - | tig0021514:72458-72477 | None:intergenic | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | - | tig0021514:72459-72478 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | + | tig0021514:72745-72764 | Msa1392520:CDS | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | tig0021514:72834-72853 | Msa1392520:CDS | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | tig0021514:72835-72854 | Msa1392520:CDS | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | + | tig0021514:72836-72855 | Msa1392520:CDS | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | - | tig0021514:73205-73224 | None:intergenic | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | + | tig0021514:73303-73322 | Msa1392520:CDS | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | + | tig0021514:73304-73323 | Msa1392520:CDS | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | + | tig0021514:73404-73423 | Msa1392520:CDS | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | + | tig0021514:73540-73559 | Msa1392520:CDS | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | tig0021514:73909-73928 | Msa1392520:CDS | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | tig0021514:73921-73940 | None:intergenic | 40.0% |
| CATCAAAAAGGCCAGAATGA+TGG | + | tig0021514:74326-74345 | Msa1392520:CDS | 40.0% | |
| AACTCAGCTTCTTCAGTTGT+TGG | - | tig0021514:74411-74430 | None:intergenic | 40.0% | |
| ! | CCGATAATGGCACAAACTAA+AGG | + | tig0021514:74444-74463 | Msa1392520:CDS | 40.0% |
| CAACCTGGAAGAATCAAAAG+CGG | + | tig0021514:74495-74514 | Msa1392520:CDS | 40.0% | |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | - | tig0021514:72842-72861 | None:intergenic | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | - | tig0021514:72903-72922 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | + | tig0021514:73199-73218 | Msa1392520:CDS | 45.0% |
| GATCAAGATAAGGCGATGTG+CGG | + | tig0021514:73355-73374 | Msa1392520:CDS | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | + | tig0021514:73369-73388 | Msa1392520:CDS | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | + | tig0021514:73656-73675 | Msa1392520:CDS | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | - | tig0021514:73728-73747 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | - | tig0021514:74020-74039 | None:intergenic | 45.0% | |
| TCTTTCGGAGTCCATCATTC+TGG | - | tig0021514:74340-74359 | None:intergenic | 45.0% | |
| AATGCTCGAGTTTCTCAACC+TGG | + | tig0021514:74480-74499 | Msa1392520:CDS | 45.0% | |
| !! | AGACCGCTTTTGATTCTTCC+AGG | - | tig0021514:74501-74520 | None:intergenic | 45.0% |
| TGGAAGAATCAAAAGCGGTC+TGG | + | tig0021514:74500-74519 | Msa1392520:CDS | 45.0% | |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | - | tig0021514:72842-72861 | None:intergenic | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | - | tig0021514:72903-72922 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | + | tig0021514:73199-73218 | Msa1392520:CDS | 45.0% |
| GATCAAGATAAGGCGATGTG+CGG | + | tig0021514:73355-73374 | Msa1392520:CDS | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | + | tig0021514:73369-73388 | Msa1392520:CDS | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | + | tig0021514:73656-73675 | Msa1392520:CDS | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | - | tig0021514:73728-73747 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | - | tig0021514:74020-74039 | None:intergenic | 45.0% | |
| TCTTTCGGAGTCCATCATTC+TGG | - | tig0021514:74340-74359 | None:intergenic | 45.0% | |
| AATGCTCGAGTTTCTCAACC+TGG | + | tig0021514:74480-74499 | Msa1392520:CDS | 45.0% | |
| !! | AGACCGCTTTTGATTCTTCC+AGG | - | tig0021514:74501-74520 | None:intergenic | 45.0% |
| TGGAAGAATCAAAAGCGGTC+TGG | + | tig0021514:74500-74519 | Msa1392520:CDS | 45.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | tig0021514:73110-73129 | Msa1392520:intron | 50.0% |
| ACTTGGCTAATGGCAATGGG+TGG | + | tig0021514:73307-73326 | Msa1392520:CDS | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | + | tig0021514:73891-73910 | Msa1392520:CDS | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | tig0021514:74021-74040 | Msa1392520:CDS | 50.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | tig0021514:73110-73129 | Msa1392520:intron | 50.0% |
| ACTTGGCTAATGGCAATGGG+TGG | + | tig0021514:73307-73326 | Msa1392520:CDS | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | + | tig0021514:73891-73910 | Msa1392520:CDS | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | tig0021514:74021-74040 | Msa1392520:CDS | 50.0% | |
| GATCAAGAGGGCTTGCCTAC+CGG | + | tig0021514:72885-72904 | Msa1392520:CDS | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | tig0021514:73114-73133 | Msa1392520:intron | 55.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | + | tig0021514:72885-72904 | Msa1392520:CDS | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | tig0021514:73114-73133 | Msa1392520:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021514 | gene | 72243 | 74644 | 72243 | ID=Msa1392520;Name=Msa1392520 |
| tig0021514 | mRNA | 72243 | 74644 | 72243 | ID=Msa1392520-mRNA-1;Parent=Msa1392520;Name=Msa1392520-mRNA-1;_AED=0.20;_eAED=0.23;_QI=0|0|0|0.66|1|1|3|0|723 |
| tig0021514 | exon | 72243 | 72299 | 72243 | ID=Msa1392520-mRNA-1:exon:13185;Parent=Msa1392520-mRNA-1 |
| tig0021514 | exon | 72426 | 73021 | 72426 | ID=Msa1392520-mRNA-1:exon:13186;Parent=Msa1392520-mRNA-1 |
| tig0021514 | exon | 73126 | 74644 | 73126 | ID=Msa1392520-mRNA-1:exon:13187;Parent=Msa1392520-mRNA-1 |
| tig0021514 | CDS | 72243 | 72299 | 72243 | ID=Msa1392520-mRNA-1:cds;Parent=Msa1392520-mRNA-1 |
| tig0021514 | CDS | 72426 | 73021 | 72426 | ID=Msa1392520-mRNA-1:cds;Parent=Msa1392520-mRNA-1 |
| tig0021514 | CDS | 73126 | 74644 | 73126 | ID=Msa1392520-mRNA-1:cds;Parent=Msa1392520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
