Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394550 | RHN61826.1 | 95.500 | 200 | 8 | 1 | 95 | 293 | 1 | 200 | 1.38e-138 | 401 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394550 | sp|Q9LNB9|LBD2_ARATH | 60.000 | 100 | 33 | 1 | 106 | 205 | 22 | 114 | 3.86e-37 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394550 | A0A396I891 | 95.500 | 200 | 8 | 1 | 95 | 293 | 1 | 200 | 6.61e-139 | 401 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1394550 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394550 | MtrunA17_Chr4g0040831 | 95.500 | 200 | 8 | 1 | 95 | 293 | 1 | 200 | 1.27e-142 | 401 |
| Msa1394550 | MtrunA17_Chr4g0046201 | 47.191 | 89 | 47 | 0 | 108 | 196 | 6 | 94 | 5.06e-25 | 101 |
| Msa1394550 | MtrunA17_Chr3g0115431 | 45.161 | 93 | 51 | 0 | 109 | 201 | 10 | 102 | 4.03e-22 | 92.8 |
| Msa1394550 | MtrunA17_Chr3g0106101 | 42.105 | 95 | 55 | 0 | 109 | 203 | 8 | 102 | 7.88e-22 | 90.9 |
| Msa1394550 | MtrunA17_Chr2g0330201 | 34.228 | 149 | 96 | 1 | 104 | 250 | 15 | 163 | 1.54e-21 | 92.8 |
| Msa1394550 | MtrunA17_Chr8g0342351 | 41.667 | 108 | 52 | 2 | 107 | 205 | 11 | 116 | 1.86e-21 | 92.0 |
| Msa1394550 | MtrunA17_Chr4g0059901 | 44.828 | 87 | 48 | 0 | 104 | 190 | 6 | 92 | 2.05e-21 | 92.0 |
| Msa1394550 | MtrunA17_Chr2g0311601 | 38.739 | 111 | 58 | 2 | 104 | 214 | 9 | 109 | 3.52e-21 | 88.6 |
| Msa1394550 | MtrunA17_Chr1g0200201 | 32.653 | 147 | 92 | 1 | 109 | 248 | 73 | 219 | 4.31e-21 | 90.1 |
| Msa1394550 | MtrunA17_Chr4g0058651 | 43.011 | 93 | 53 | 0 | 109 | 201 | 12 | 104 | 7.20e-21 | 88.6 |
| Msa1394550 | MtrunA17_Chr7g0227511 | 41.935 | 93 | 54 | 0 | 109 | 201 | 12 | 104 | 7.60e-21 | 88.2 |
| Msa1394550 | MtrunA17_Chr5g0437571 | 40.000 | 100 | 56 | 1 | 104 | 203 | 2 | 97 | 1.04e-20 | 87.4 |
| Msa1394550 | MtrunA17_Chr6g0452691 | 45.679 | 81 | 43 | 1 | 106 | 185 | 7 | 87 | 1.06e-20 | 87.8 |
| Msa1394550 | MtrunA17_Chr3g0117121 | 38.835 | 103 | 63 | 0 | 99 | 201 | 1 | 103 | 1.40e-20 | 87.8 |
| Msa1394550 | MtrunA17_Chr4g0043421 | 37.000 | 100 | 63 | 0 | 104 | 203 | 11 | 110 | 1.70e-20 | 87.0 |
| Msa1394550 | MtrunA17_Chr3g0114061 | 41.053 | 95 | 52 | 1 | 109 | 203 | 9 | 99 | 2.70e-20 | 86.3 |
| Msa1394550 | MtrunA17_Chr6g0449641 | 39.785 | 93 | 56 | 0 | 109 | 201 | 10 | 102 | 4.74e-20 | 85.1 |
| Msa1394550 | MtrunA17_Chr5g0438091 | 35.185 | 108 | 68 | 1 | 109 | 214 | 40 | 147 | 9.30e-20 | 85.9 |
| Msa1394550 | MtrunA17_Chr6g0452661 | 40.594 | 101 | 56 | 2 | 106 | 202 | 7 | 107 | 1.04e-19 | 86.7 |
| Msa1394550 | MtrunA17_Chr4g0030001 | 39.362 | 94 | 56 | 1 | 109 | 201 | 25 | 118 | 2.70e-19 | 84.3 |
| Msa1394550 | MtrunA17_Chr5g0437401 | 47.436 | 78 | 41 | 0 | 108 | 185 | 11 | 88 | 2.82e-19 | 84.0 |
| Msa1394550 | MtrunA17_Chr6g0452671 | 38.053 | 113 | 67 | 1 | 101 | 210 | 4 | 116 | 3.15e-19 | 84.3 |
| Msa1394550 | MtrunA17_Chr6g0449651 | 39.785 | 93 | 56 | 0 | 109 | 201 | 68 | 160 | 4.35e-19 | 84.0 |
| Msa1394550 | MtrunA17_Chr5g0402611 | 40.860 | 93 | 55 | 0 | 109 | 201 | 9 | 101 | 6.11e-19 | 85.9 |
| Msa1394550 | MtrunA17_Chr7g0245871 | 41.176 | 102 | 59 | 1 | 109 | 209 | 28 | 129 | 6.93e-19 | 84.3 |
| Msa1394550 | MtrunA17_Chr8g0374581 | 39.623 | 106 | 60 | 2 | 109 | 213 | 9 | 111 | 7.82e-19 | 84.0 |
| Msa1394550 | MtrunA17_Chr5g0432451 | 45.455 | 77 | 42 | 0 | 109 | 185 | 44 | 120 | 8.45e-19 | 84.0 |
| Msa1394550 | MtrunA17_Chr3g0113891 | 44.872 | 78 | 43 | 0 | 108 | 185 | 14 | 91 | 1.18e-18 | 82.4 |
| Msa1394550 | MtrunA17_Chr3g0129071 | 37.113 | 97 | 61 | 0 | 109 | 205 | 48 | 144 | 1.32e-18 | 83.6 |
| Msa1394550 | MtrunA17_Chr8g0374591 | 37.000 | 100 | 63 | 0 | 107 | 206 | 7 | 106 | 1.98e-18 | 80.1 |
| Msa1394550 | MtrunA17_Chr8g0353981 | 45.455 | 77 | 42 | 0 | 109 | 185 | 8 | 84 | 2.45e-18 | 82.4 |
| Msa1394550 | MtrunA17_Chr4g0055441 | 36.585 | 123 | 72 | 2 | 109 | 225 | 3 | 125 | 2.61e-18 | 80.5 |
| Msa1394550 | MtrunA17_Chr5g0435641 | 31.579 | 133 | 89 | 2 | 104 | 234 | 3 | 135 | 4.71e-18 | 80.9 |
| Msa1394550 | MtrunA17_Chr3g0097221 | 38.144 | 97 | 60 | 0 | 109 | 205 | 8 | 104 | 9.72e-18 | 82.0 |
| Msa1394550 | MtrunA17_Chr8g0374601 | 30.328 | 122 | 85 | 0 | 85 | 206 | 3 | 124 | 2.74e-17 | 80.5 |
| Msa1394550 | MtrunA17_Chr8g0351701 | 39.000 | 100 | 60 | 1 | 109 | 207 | 24 | 123 | 3.26e-17 | 79.3 |
| Msa1394550 | MtrunA17_Chr5g0444351 | 35.484 | 93 | 60 | 0 | 109 | 201 | 6 | 98 | 4.35e-17 | 77.0 |
| Msa1394550 | MtrunA17_Chr7g0225111 | 32.673 | 101 | 68 | 0 | 105 | 205 | 2 | 102 | 8.73e-17 | 75.5 |
| Msa1394550 | MtrunA17_Chr6g0460941 | 42.667 | 75 | 42 | 1 | 109 | 182 | 8 | 82 | 2.24e-16 | 73.6 |
| Msa1394550 | MtrunA17_Chr5g0439111 | 36.607 | 112 | 67 | 2 | 106 | 213 | 7 | 118 | 2.83e-16 | 77.0 |
| Msa1394550 | MtrunA17_Chr8g0351721 | 48.000 | 75 | 38 | 1 | 109 | 182 | 19 | 93 | 4.45e-16 | 75.9 |
| Msa1394550 | MtrunA17_Chr6g0460951 | 36.190 | 105 | 63 | 2 | 109 | 212 | 41 | 142 | 1.32e-15 | 74.7 |
| Msa1394550 | MtrunA17_Chr7g0260971 | 35.897 | 117 | 64 | 3 | 102 | 217 | 8 | 114 | 1.33e-15 | 74.7 |
| Msa1394550 | MtrunA17_Chr1g0184281 | 29.936 | 157 | 92 | 5 | 109 | 263 | 16 | 156 | 1.32e-14 | 71.6 |
| Msa1394550 | MtrunA17_Chr7g0261031 | 33.333 | 108 | 71 | 1 | 104 | 210 | 4 | 111 | 1.46e-14 | 72.0 |
| Msa1394550 | MtrunA17_Chr7g0245861 | 47.436 | 78 | 38 | 2 | 109 | 183 | 13 | 90 | 2.65e-14 | 69.3 |
| Msa1394550 | MtrunA17_Chr2g0326041 | 54.348 | 46 | 21 | 0 | 109 | 154 | 34 | 79 | 3.36e-14 | 67.4 |
| Msa1394550 | MtrunA17_Chr1g0184271 | 41.333 | 75 | 43 | 1 | 109 | 182 | 13 | 87 | 8.05e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394550 | AT1G06280.1 | 60.000 | 100 | 33 | 1 | 106 | 205 | 22 | 114 | 3.92e-38 | 135 |
| Msa1394550 | AT3G13850.1 | 43.363 | 113 | 53 | 2 | 107 | 210 | 35 | 145 | 9.64e-27 | 106 |
| Msa1394550 | AT3G50510.1 | 37.383 | 107 | 67 | 0 | 109 | 215 | 13 | 119 | 2.09e-23 | 95.9 |
| Msa1394550 | AT3G50510.2 | 37.383 | 107 | 67 | 0 | 109 | 215 | 13 | 119 | 2.09e-23 | 95.9 |
| Msa1394550 | AT1G72980.1 | 45.098 | 102 | 56 | 0 | 104 | 205 | 9 | 110 | 6.93e-23 | 95.1 |
| Msa1394550 | AT5G63090.4 | 41.176 | 102 | 60 | 0 | 100 | 201 | 3 | 104 | 1.57e-21 | 90.5 |
| Msa1394550 | AT5G63090.3 | 41.176 | 102 | 60 | 0 | 100 | 201 | 3 | 104 | 1.57e-21 | 90.5 |
| Msa1394550 | AT5G63090.2 | 41.176 | 102 | 60 | 0 | 100 | 201 | 3 | 104 | 1.57e-21 | 90.5 |
| Msa1394550 | AT5G63090.1 | 41.176 | 102 | 60 | 0 | 100 | 201 | 3 | 104 | 1.57e-21 | 90.5 |
| Msa1394550 | AT1G07900.1 | 48.052 | 77 | 40 | 0 | 109 | 185 | 34 | 110 | 4.15e-21 | 89.7 |
| Msa1394550 | AT5G66870.1 | 33.571 | 140 | 78 | 2 | 109 | 234 | 8 | 146 | 5.73e-21 | 92.0 |
| Msa1394550 | AT2G28500.1 | 39.423 | 104 | 60 | 1 | 109 | 212 | 56 | 156 | 6.00e-21 | 90.1 |
| Msa1394550 | AT2G23660.2 | 41.489 | 94 | 55 | 0 | 108 | 201 | 5 | 98 | 2.39e-20 | 90.1 |
| Msa1394550 | AT2G23660.3 | 41.489 | 94 | 55 | 0 | 108 | 201 | 5 | 98 | 2.39e-20 | 90.1 |
| Msa1394550 | AT2G23660.1 | 41.489 | 94 | 55 | 0 | 108 | 201 | 5 | 98 | 2.39e-20 | 90.1 |
| Msa1394550 | AT2G30130.1 | 38.947 | 95 | 58 | 0 | 109 | 203 | 9 | 103 | 7.17e-20 | 86.3 |
| Msa1394550 | AT3G27650.1 | 35.849 | 106 | 68 | 0 | 97 | 202 | 28 | 133 | 7.25e-20 | 85.5 |
| Msa1394550 | AT1G16530.1 | 31.967 | 122 | 79 | 2 | 109 | 229 | 15 | 133 | 1.35e-19 | 84.7 |
| Msa1394550 | AT1G65620.1 | 48.052 | 77 | 40 | 0 | 109 | 185 | 10 | 86 | 1.93e-19 | 85.1 |
| Msa1394550 | AT1G65620.4 | 48.052 | 77 | 40 | 0 | 109 | 185 | 10 | 86 | 1.93e-19 | 85.1 |
| Msa1394550 | AT1G65620.3 | 48.052 | 77 | 40 | 0 | 109 | 185 | 10 | 86 | 1.93e-19 | 85.1 |
| Msa1394550 | AT1G65620.5 | 48.052 | 77 | 40 | 0 | 109 | 185 | 10 | 86 | 1.93e-19 | 85.1 |
| Msa1394550 | AT1G65620.2 | 48.052 | 77 | 40 | 0 | 109 | 185 | 10 | 86 | 1.93e-19 | 85.1 |
| Msa1394550 | AT3G47870.1 | 34.862 | 109 | 64 | 1 | 104 | 205 | 32 | 140 | 1.28e-18 | 85.5 |
| Msa1394550 | AT1G31320.1 | 37.363 | 91 | 57 | 0 | 100 | 190 | 5 | 95 | 1.30e-18 | 82.4 |
| Msa1394550 | AT2G30340.2 | 40.206 | 97 | 58 | 0 | 109 | 205 | 54 | 150 | 1.67e-18 | 84.3 |
| Msa1394550 | AT2G30340.1 | 40.206 | 97 | 58 | 0 | 109 | 205 | 53 | 149 | 1.91e-18 | 84.0 |
| Msa1394550 | AT4G00210.1 | 35.897 | 117 | 74 | 1 | 101 | 216 | 4 | 120 | 2.63e-18 | 82.8 |
| Msa1394550 | AT3G11090.1 | 38.776 | 98 | 60 | 0 | 108 | 205 | 11 | 108 | 2.63e-18 | 81.3 |
| Msa1394550 | AT2G40470.1 | 32.331 | 133 | 84 | 2 | 80 | 206 | 11 | 143 | 1.42e-17 | 80.9 |
| Msa1394550 | AT3G26660.1 | 33.333 | 93 | 62 | 0 | 109 | 201 | 6 | 98 | 1.85e-17 | 77.8 |
| Msa1394550 | AT3G26620.1 | 33.333 | 93 | 62 | 0 | 109 | 201 | 6 | 98 | 1.95e-17 | 77.8 |
| Msa1394550 | AT2G40470.2 | 36.735 | 98 | 62 | 0 | 109 | 206 | 21 | 118 | 3.28e-17 | 79.3 |
| Msa1394550 | AT2G42430.1 | 43.750 | 80 | 44 | 1 | 104 | 182 | 11 | 90 | 1.72e-16 | 78.2 |
| Msa1394550 | AT4G00220.1 | 39.216 | 102 | 61 | 1 | 111 | 211 | 20 | 121 | 2.13e-16 | 77.4 |
| Msa1394550 | AT5G35900.1 | 33.645 | 107 | 66 | 2 | 109 | 214 | 6 | 108 | 3.54e-16 | 76.3 |
| Msa1394550 | AT5G06080.1 | 34.694 | 98 | 63 | 1 | 108 | 204 | 7 | 104 | 5.54e-16 | 75.1 |
| Msa1394550 | AT2G45410.1 | 32.773 | 119 | 79 | 1 | 111 | 228 | 19 | 137 | 1.08e-15 | 74.7 |
| Msa1394550 | AT2G31310.1 | 38.947 | 95 | 54 | 2 | 104 | 197 | 3 | 94 | 1.41e-15 | 74.3 |
| Msa1394550 | AT2G19820.1 | 35.106 | 94 | 60 | 1 | 98 | 190 | 2 | 95 | 4.61e-15 | 71.2 |
| Msa1394550 | AT3G58190.1 | 30.216 | 139 | 79 | 3 | 109 | 236 | 12 | 143 | 5.35e-15 | 73.6 |
| Msa1394550 | AT2G42440.1 | 30.275 | 109 | 75 | 1 | 103 | 210 | 2 | 110 | 1.42e-14 | 72.8 |
| Msa1394550 | AT2G45420.1 | 37.255 | 102 | 63 | 1 | 111 | 211 | 40 | 141 | 6.33e-14 | 71.2 |
| Msa1394550 | AT3G03760.1 | 35.238 | 105 | 64 | 2 | 109 | 212 | 52 | 153 | 9.97e-14 | 70.9 |
| Msa1394550 | AT5G15060.1 | 29.661 | 118 | 71 | 4 | 101 | 216 | 10 | 117 | 1.49e-11 | 62.0 |
Find 71 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGACTGCTGCTGAATATT+TGG | 0.145265 | tig0021860:-59013 | None:intergenic |
| TGAACAATATGTATTATAAA+TGG | 0.237268 | tig0021860:-58945 | None:intergenic |
| GGAAGTTTCATGTTTGGATT+TGG | 0.267257 | tig0021860:+59511 | Msa1394550:CDS |
| AGAAATATTAGTAATAATAA+TGG | 0.289856 | tig0021860:+58488 | Msa1394550:CDS |
| TCTCCATAAGAACCATTTAT+AGG | 0.292857 | tig0021860:-58734 | None:intergenic |
| AATTCTCTACTTCTGCTTGA+TGG | 0.303337 | tig0021860:-58587 | None:intergenic |
| GCACTTGCACCAATTGGTTT+TGG | 0.305386 | tig0021860:-58820 | None:intergenic |
| AAGTTGTGGATTCATTGATA+TGG | 0.307263 | tig0021860:+58687 | Msa1394550:CDS |
| TGGATGTATTTATACATTTA+CGG | 0.311451 | tig0021860:+57250 | Msa1394550:CDS |
| AGGCAAAGGGATCCTATAAA+TGG | 0.334383 | tig0021860:+58722 | Msa1394550:CDS |
| TCGCCGGAAGGTTGCGGATT+GGG | 0.350540 | tig0021860:+57342 | Msa1394550:CDS |
| AATGAAGGAAGTTTCATGTT+TGG | 0.352613 | tig0021860:+59505 | Msa1394550:CDS |
| GATCCTATAAATGGTTCTTA+TGG | 0.354301 | tig0021860:+58731 | Msa1394550:CDS |
| TACAAGATCTTGATAGTTTG+AGG | 0.357044 | tig0021860:+58975 | Msa1394550:CDS |
| AGGTATACCTTGCATTATAA+TGG | 0.365834 | tig0021860:+57226 | Msa1394550:CDS |
| TCCATGCTCCCATTCTTCAC+TGG | 0.393263 | tig0021860:-59453 | None:intergenic |
| GTGACTGCTGCTGAATATTT+GGG | 0.405388 | tig0021860:-59012 | None:intergenic |
| AAACGACAACCTTCAATAGT+TGG | 0.407292 | tig0021860:+57310 | Msa1394550:CDS |
| AGTTGTGGATTCATTGATAT+GGG | 0.416674 | tig0021860:+58688 | Msa1394550:CDS |
| GAAATATTAGTAATAATAAT+GGG | 0.417105 | tig0021860:+58489 | Msa1394550:CDS |
| AAAGCAGTGCACAAAGTGTT+TGG | 0.418599 | tig0021860:+58611 | Msa1394550:CDS |
| TCTCCCAATCCGCAACCTTC+CGG | 0.428607 | tig0021860:-57345 | None:intergenic |
| TATTTATACATTTACGGAAA+GGG | 0.438034 | tig0021860:+57256 | Msa1394550:CDS |
| GAGGTGGCACTTGCACCAAT+TGG | 0.438774 | tig0021860:-58826 | None:intergenic |
| GATTATCATCATCTTCATCA+TGG | 0.452314 | tig0021860:+58890 | Msa1394550:CDS |
| AGCTGATCGCCGGAAGGTTG+CGG | 0.456745 | tig0021860:+57336 | Msa1394550:CDS |
| TCACAGTCATACTATATTGC+AGG | 0.457053 | tig0021860:+59031 | Msa1394550:CDS |
| CGAATTCAACCAGTGAAGAA+TGG | 0.458370 | tig0021860:+59444 | Msa1394550:CDS |
| TCAGCTGACCCAACTATTGA+AGG | 0.466177 | tig0021860:-57319 | None:intergenic |
| TAGAGATCACCAAAACCAAT+TGG | 0.474361 | tig0021860:+58811 | Msa1394550:CDS |
| AACGACAACCTTCAATAGTT+GGG | 0.477061 | tig0021860:+57311 | Msa1394550:CDS |
| ATCGCCGGAAGGTTGCGGAT+TGG | 0.477274 | tig0021860:+57341 | Msa1394550:CDS |
| CTTCTGCTTGATGGAAAGTA+AGG | 0.478129 | tig0021860:-58578 | None:intergenic |
| GAATTCAACCAGTGAAGAAT+GGG | 0.486044 | tig0021860:+59445 | Msa1394550:CDS |
| TAATCAACTGCATTATGATC+AGG | 0.493064 | tig0021860:-58872 | None:intergenic |
| GCGATTGTTGCAATCTCTGT+TGG | 0.506900 | tig0021860:+56749 | Msa1394550:CDS |
| ATTATCATCATCTTCATCAT+GGG | 0.522912 | tig0021860:+58891 | Msa1394550:CDS |
| AACAATCGCTAGTAGCTGTA+TGG | 0.524685 | tig0021860:-56735 | None:intergenic |
| GCTCTAACTTTCCCTTGAGG+TGG | 0.530192 | tig0021860:-58842 | None:intergenic |
| CATCATGGGAATCATAAGAA+TGG | 0.531608 | tig0021860:+58905 | Msa1394550:CDS |
| ATTTATACATTTACGGAAAG+GGG | 0.531636 | tig0021860:+57257 | Msa1394550:CDS |
| GGGAGATAGAAGAAAAGTTG+TGG | 0.539608 | tig0021860:+58673 | Msa1394550:CDS |
| TGATATGGGAAGCACTCTCT+AGG | 0.540083 | tig0021860:+58702 | Msa1394550:CDS |
| ATACCTTGCATTATAATGGA+TGG | 0.544144 | tig0021860:+57230 | Msa1394550:CDS |
| GTATTTATACATTTACGGAA+AGG | 0.545649 | tig0021860:+57255 | Msa1394550:CDS |
| ATGGAAGAAGGCACATGGGT+TGG | 0.545976 | tig0021860:+59471 | Msa1394550:CDS |
| AGTAGCTGTATGGTTGTCAA+TGG | 0.547893 | tig0021860:-56725 | None:intergenic |
| GCGCAGCATGCAAGCATCAA+AGG | 0.554577 | tig0021860:+58525 | Msa1394550:CDS |
| GGAAGCACTCTCTAGGCAAA+GGG | 0.561200 | tig0021860:+58709 | Msa1394550:CDS |
| GGGAAGCACTCTCTAGGCAA+AGG | 0.562224 | tig0021860:+58708 | Msa1394550:CDS |
| AAGAATGGGAGCATGGAAGA+AGG | 0.565247 | tig0021860:+59459 | Msa1394550:CDS |
| GGTTGTCGTTTGTAATGACT+TGG | 0.566069 | tig0021860:-57298 | None:intergenic |
| ACCAGTGAAGAATGGGAGCA+TGG | 0.574343 | tig0021860:+59452 | Msa1394550:CDS |
| TGCATAAATTTACGTGAAGG+AGG | 0.575581 | tig0021860:+56348 | Msa1394550:CDS |
| CATAAATTTACGTGAAGGAG+GGG | 0.576521 | tig0021860:+56350 | Msa1394550:CDS |
| TTGGTGCAAGTGCCACCTCA+AGG | 0.577515 | tig0021860:+58830 | Msa1394550:CDS |
| TTGGCAATCAAACAGAATGA+AGG | 0.578033 | tig0021860:+59490 | Msa1394550:CDS |
| CATCCATCCATTATAATGCA+AGG | 0.581696 | tig0021860:-57233 | None:intergenic |
| TGGTGCAAGTGCCACCTCAA+GGG | 0.587697 | tig0021860:+58831 | Msa1394550:CDS |
| TAGTTGGGTCAGCTGATCGC+CGG | 0.590967 | tig0021860:+57326 | Msa1394550:CDS |
| TGTGCTTGCTGAGCAGCAGA+TGG | 0.591705 | tig0021860:-56781 | None:intergenic |
| TCTGCTCTAACTTTCCCTTG+AGG | 0.597530 | tig0021860:-58845 | None:intergenic |
| GTTTGTAAGAAATGCTCAAG+AGG | 0.598939 | tig0021860:+58652 | Msa1394550:CDS |
| GGAGCATGGAAGAAGGCACA+TGG | 0.605533 | tig0021860:+59466 | Msa1394550:CDS |
| GCATAAATTTACGTGAAGGA+GGG | 0.608487 | tig0021860:+56349 | Msa1394550:CDS |
| TTTGTAAGAAATGCTCAAGA+GGG | 0.635754 | tig0021860:+58653 | Msa1394550:CDS |
| TGGGTCAGCTGATCGCCGGA+AGG | 0.635794 | tig0021860:+57330 | Msa1394550:CDS |
| ATGTGCATAAATTTACGTGA+AGG | 0.637705 | tig0021860:+56345 | Msa1394550:CDS |
| AAATTTACGTGAAGGAGGGG+AGG | 0.648997 | tig0021860:+56353 | Msa1394550:CDS |
| TACGGAAAGGGGAATCATCG+TGG | 0.677093 | tig0021860:+57268 | Msa1394550:CDS |
| GAGCATGGAAGAAGGCACAT+GGG | 0.696747 | tig0021860:+59467 | Msa1394550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTATTGTAAATACTA+AGG | + | tig0021860:56958-56977 | Msa1394550:intron | 10.0% |
| !! | ATACATATTATAGTTTATTT+CGG | - | tig0021860:57028-57047 | None:intergenic | 10.0% |
| !!! | TTAGATTCTTTTTAATTATA+TGG | + | tig0021860:57957-57976 | Msa1394550:intron | 10.0% |
| !!! | TAGATTCTTTTTAATTATAT+GGG | + | tig0021860:57958-57977 | Msa1394550:intron | 10.0% |
| !!! | ATATATTCTTTTTTTAATCA+TGG | + | tig0021860:58041-58060 | Msa1394550:intron | 10.0% |
| !! | AGAAATATTAGTAATAATAA+TGG | + | tig0021860:58488-58507 | Msa1394550:CDS | 10.0% |
| !! | GAAATATTAGTAATAATAAT+GGG | + | tig0021860:58489-58508 | Msa1394550:CDS | 10.0% |
| !!! | CTTTTTCTATACATAATTAT+AGG | + | tig0021860:57796-57815 | Msa1394550:intron | 15.0% |
| !!! | AGATTCTTTTTAATTATATG+GGG | + | tig0021860:57959-57978 | Msa1394550:intron | 15.0% |
| !! | AAGAAAATTTACTTATGATT+TGG | + | tig0021860:58177-58196 | Msa1394550:intron | 15.0% |
| !! | TGAACAATATGTATTATAAA+TGG | - | tig0021860:58948-58967 | None:intergenic | 15.0% |
| !! | AACAAGATAAATTAGAAAAG+TGG | + | tig0021860:56517-56536 | Msa1394550:intron | 20.0% |
| !!! | ATATAAAATAGACTGCATTT+TGG | - | tig0021860:56832-56851 | None:intergenic | 20.0% |
| !!! | TAAATGAAAGTTGATGATAT+GGG | - | tig0021860:56867-56886 | None:intergenic | 20.0% |
| !!! | AGATGTAGTTAAATCTTTTA+TGG | - | tig0021860:57095-57114 | None:intergenic | 20.0% |
| !! | TGGATGTATTTATACATTTA+CGG | + | tig0021860:57250-57269 | Msa1394550:CDS | 20.0% |
| !! | TATTTATACATTTACGGAAA+GGG | + | tig0021860:57256-57275 | Msa1394550:CDS | 20.0% |
| !!! | ATAATGTTTTGTATTTGCTT+CGG | - | tig0021860:57436-57455 | None:intergenic | 20.0% |
| !!! | GGTATTTGTATCTTATTTTT+CGG | + | tig0021860:57646-57665 | Msa1394550:intron | 20.0% |
| !!! | GTATTTGTATCTTATTTTTC+GGG | + | tig0021860:57647-57666 | Msa1394550:intron | 20.0% |
| !!! | TTTAAAGATGAAGTTTGTTT+AGG | - | tig0021860:57702-57721 | None:intergenic | 20.0% |
| !!! | GATTCTTTTTAATTATATGG+GGG | + | tig0021860:57960-57979 | Msa1394550:intron | 20.0% |
| !!! | ATAATTTTTAGCTTGTTTGA+TGG | + | tig0021860:58324-58343 | Msa1394550:intron | 20.0% |
| !! | TTTAACAAAAAACATGAGAT+TGG | - | tig0021860:59062-59081 | None:intergenic | 20.0% |
| !! | CACTAAATTAGTAATTAGTT+TGG | + | tig0021860:59352-59371 | Msa1394550:intron | 20.0% |
| !!! | TTTTCCTGTTTCAATATTTT+AGG | + | tig0021860:59418-59437 | Msa1394550:intron | 20.0% |
| ! | TGCTGGTATAAATGAATAAA+AGG | + | tig0021860:56384-56403 | Msa1394550:intron | 25.0% |
| ! | GCTGGTATAAATGAATAAAA+GGG | + | tig0021860:56385-56404 | Msa1394550:intron | 25.0% |
| ! | CTGGTATAAATGAATAAAAG+GGG | + | tig0021860:56386-56405 | Msa1394550:intron | 25.0% |
| ! | AGATAAATTAGAAAAGTGGA+CGG | + | tig0021860:56521-56540 | Msa1394550:intron | 25.0% |
| !!! | GTAAATGAAAGTTGATGATA+TGG | - | tig0021860:56868-56887 | None:intergenic | 25.0% |
| ! | ATTTATGTTACCTACTCAAT+GGG | - | tig0021860:56942-56961 | None:intergenic | 25.0% |
| ! | AATTTATGTTACCTACTCAA+TGG | - | tig0021860:56943-56962 | None:intergenic | 25.0% |
| !!! | TAAATACTAAGGTTGATAGT+CGG | + | tig0021860:56969-56988 | Msa1394550:intron | 25.0% |
| ! | GTATTTATACATTTACGGAA+AGG | + | tig0021860:57255-57274 | Msa1394550:CDS | 25.0% |
| ! | ATTTATACATTTACGGAAAG+GGG | + | tig0021860:57257-57276 | Msa1394550:CDS | 25.0% |
| !!! | GTGTTTTTGTTACAAATCTT+TGG | - | tig0021860:57527-57546 | None:intergenic | 25.0% |
| ! | AACACAATAACTATTTCCAA+AGG | + | tig0021860:57860-57879 | Msa1394550:intron | 25.0% |
| ! | TAATTCAAGATACAAACCTT+TGG | - | tig0021860:57879-57898 | None:intergenic | 25.0% |
| !! | ATTATTCTACTTCAGTTTTG+TGG | + | tig0021860:57895-57914 | Msa1394550:intron | 25.0% |
| ! | AGTTACGAAAAGTAATAGTA+TGG | + | tig0021860:58115-58134 | Msa1394550:intron | 25.0% |
| ! | CAAATCTTAACATGAAAGTT+GGG | - | tig0021860:58205-58224 | None:intergenic | 25.0% |
| ! | ACAAATCTTAACATGAAAGT+TGG | - | tig0021860:58206-58225 | None:intergenic | 25.0% |
| !!! | TTACATGTATTGACTTAACA+TGG | - | tig0021860:58248-58267 | None:intergenic | 25.0% |
| ! | TTTACTTTAAATCTCCTTGT+AGG | + | tig0021860:58459-58478 | Msa1394550:intron | 25.0% |
| ! | ATTATCATCATCTTCATCAT+GGG | + | tig0021860:58891-58910 | Msa1394550:CDS | 25.0% |
| ! | AGTTGTGACATTATCAAATA+TGG | + | tig0021860:59209-59228 | Msa1394550:intron | 25.0% |
| ATGTGCATAAATTTACGTGA+AGG | + | tig0021860:56345-56364 | Msa1394550:CDS | 30.0% | |
| AATGAATAAAAGGGGAAATG+CGG | + | tig0021860:56394-56413 | Msa1394550:intron | 30.0% | |
| ACGCATGTAAATTATGAAGA+AGG | - | tig0021860:56496-56515 | None:intergenic | 30.0% | |
| TTAATTAAAGCCTCGAATGT+AGG | - | tig0021860:56590-56609 | None:intergenic | 30.0% | |
| !!! | TTGGAATTGGTTTTTGTTTG+AGG | - | tig0021860:56649-56668 | None:intergenic | 30.0% |
| ! | GTGAAGAGTGATATGTTTTT+AGG | + | tig0021860:57195-57214 | Msa1394550:intron | 30.0% |
| !!! | AAGAGTGATATGTTTTTAGG+TGG | + | tig0021860:57198-57217 | Msa1394550:intron | 30.0% |
| !!! | TATGTTTTTAGGTGGAAAGA+AGG | + | tig0021860:57206-57225 | Msa1394550:intron | 30.0% |
| AGGTATACCTTGCATTATAA+TGG | + | tig0021860:57226-57245 | Msa1394550:CDS | 30.0% | |
| ! | ATACCTTGCATTATAATGGA+TGG | + | tig0021860:57230-57249 | Msa1394550:CDS | 30.0% |
| AAAAACACCATAATCCAAGA+GGG | + | tig0021860:57539-57558 | Msa1394550:intron | 30.0% | |
| AGTTCTTGTTACGATTTAGT+TGG | + | tig0021860:57625-57644 | Msa1394550:intron | 30.0% | |
| ! | TTTAATTATATGGGGGCTTT+TGG | + | tig0021860:57967-57986 | Msa1394550:intron | 30.0% |
| !! | TTTGAGTTTTGTGACTATGT+TGG | - | tig0021860:58091-58110 | None:intergenic | 30.0% |
| AAAAGTAATAGTATGGTGAG+AGG | + | tig0021860:58122-58141 | Msa1394550:intron | 30.0% | |
| AGGAAAAGTTAAGTTAGGTT+AGG | + | tig0021860:58142-58161 | Msa1394550:intron | 30.0% | |
| ATCTATACCCTCAATATTGA+GGG | - | tig0021860:58306-58325 | None:intergenic | 30.0% | |
| TATCTATACCCTCAATATTG+AGG | - | tig0021860:58307-58326 | None:intergenic | 30.0% | |
| GTTTCAGAAAAAAGAGAGTT+TGG | - | tig0021860:58366-58385 | None:intergenic | 30.0% | |
| TTTGTAAGAAATGCTCAAGA+GGG | + | tig0021860:58653-58672 | Msa1394550:CDS | 30.0% | |
| AAGTTGTGGATTCATTGATA+TGG | + | tig0021860:58687-58706 | Msa1394550:CDS | 30.0% | |
| AGTTGTGGATTCATTGATAT+GGG | + | tig0021860:58688-58707 | Msa1394550:CDS | 30.0% | |
| GATCCTATAAATGGTTCTTA+TGG | + | tig0021860:58731-58750 | Msa1394550:CDS | 30.0% | |
| TCTCCATAAGAACCATTTAT+AGG | - | tig0021860:58737-58756 | None:intergenic | 30.0% | |
| TAATCAACTGCATTATGATC+AGG | - | tig0021860:58875-58894 | None:intergenic | 30.0% | |
| GATTATCATCATCTTCATCA+TGG | + | tig0021860:58890-58909 | Msa1394550:CDS | 30.0% | |
| ! | TACAAGATCTTGATAGTTTG+AGG | + | tig0021860:58975-58994 | Msa1394550:CDS | 30.0% |
| AACAAAAAACATGAGATTGG+TGG | - | tig0021860:59059-59078 | None:intergenic | 30.0% | |
| !! | ACTACAAAAGAGCACTATAT+GGG | - | tig0021860:59280-59299 | None:intergenic | 30.0% |
| AGTTTGGTCAAACTATACTA+AGG | + | tig0021860:59368-59387 | Msa1394550:intron | 30.0% | |
| GTCACCTAAAATATTGAAAC+AGG | - | tig0021860:59425-59444 | None:intergenic | 30.0% | |
| AATGAAGGAAGTTTCATGTT+TGG | + | tig0021860:59505-59524 | Msa1394550:CDS | 30.0% | |
| TGCATAAATTTACGTGAAGG+AGG | + | tig0021860:56348-56367 | Msa1394550:CDS | 35.0% | |
| GCATAAATTTACGTGAAGGA+GGG | + | tig0021860:56349-56368 | Msa1394550:CDS | 35.0% | |
| CATAAATTTACGTGAAGGAG+GGG | + | tig0021860:56350-56369 | Msa1394550:CDS | 35.0% | |
| AATACAACACATTTCCTTGC+TGG | + | tig0021860:56621-56640 | Msa1394550:intron | 35.0% | |
| CATCTTGTCTTCAAAGAAGT+GGG | - | tig0021860:56677-56696 | None:intergenic | 35.0% | |
| !! | ATGAAAGTTGATGATATGGG+AGG | - | tig0021860:56864-56883 | None:intergenic | 35.0% |
| ACTAATTGCATTTGTCCGTA+TGG | + | tig0021860:56904-56923 | Msa1394550:intron | 35.0% | |
| AGCTAGATAAAAAGTTCAGG+TGG | + | tig0021860:56998-57017 | Msa1394550:intron | 35.0% | |
| CATCCATCCATTATAATGCA+AGG | - | tig0021860:57236-57255 | None:intergenic | 35.0% | |
| AAACGACAACCTTCAATAGT+TGG | + | tig0021860:57310-57329 | Msa1394550:CDS | 35.0% | |
| AACGACAACCTTCAATAGTT+GGG | + | tig0021860:57311-57330 | Msa1394550:CDS | 35.0% | |
| AAACAATTGCCAGATCGAAT+GGG | + | tig0021860:57375-57394 | Msa1394550:intron | 35.0% | |
| CAAAAACACCATAATCCAAG+AGG | + | tig0021860:57538-57557 | Msa1394550:intron | 35.0% | |
| AAAGCAGTATTGTTGAGTGT+TGG | - | tig0021860:57780-57799 | None:intergenic | 35.0% | |
| GTGAGAGGAAAAGTTAAGTT+AGG | + | tig0021860:58137-58156 | Msa1394550:intron | 35.0% | |
| TCAATATTGAGGGGATTTAG+AGG | - | tig0021860:58296-58315 | None:intergenic | 35.0% | |
| TCTAAATCCCCTCAATATTG+AGG | + | tig0021860:58295-58314 | Msa1394550:intron | 35.0% | |
| CTAAATCCCCTCAATATTGA+GGG | + | tig0021860:58296-58315 | Msa1394550:intron | 35.0% | |
| TCTATACCCTCAATATTGAG+GGG | - | tig0021860:58305-58324 | None:intergenic | 35.0% | |
| ATATTTCTCTGCATCCTACA+AGG | - | tig0021860:58476-58495 | None:intergenic | 35.0% | |
| AATTCTCTACTTCTGCTTGA+TGG | - | tig0021860:58590-58609 | None:intergenic | 35.0% | |
| GTTTGTAAGAAATGCTCAAG+AGG | + | tig0021860:58652-58671 | Msa1394550:CDS | 35.0% | |
| TAGAGATCACCAAAACCAAT+TGG | + | tig0021860:58811-58830 | Msa1394550:CDS | 35.0% | |
| CATCATGGGAATCATAAGAA+TGG | + | tig0021860:58905-58924 | Msa1394550:CDS | 35.0% | |
| TCACAGTCATACTATATTGC+AGG | + | tig0021860:59031-59050 | Msa1394550:CDS | 35.0% | |
| !! | CACTACAAAAGAGCACTATA+TGG | - | tig0021860:59281-59300 | None:intergenic | 35.0% |
| ! | CATATAGTGCTCTTTTGTAG+TGG | + | tig0021860:59279-59298 | Msa1394550:intron | 35.0% |
| GAATTCAACCAGTGAAGAAT+GGG | + | tig0021860:59445-59464 | Msa1394550:CDS | 35.0% | |
| TTGGCAATCAAACAGAATGA+AGG | + | tig0021860:59490-59509 | Msa1394550:CDS | 35.0% | |
| GGAAGTTTCATGTTTGGATT+TGG | + | tig0021860:59511-59530 | Msa1394550:CDS | 35.0% | |
| GAAATGCGGTAAAAGACAAG+AGG | + | tig0021860:56408-56427 | Msa1394550:intron | 40.0% | |
| !! | TTTTGTTTGAGGAACCAGCA+AGG | - | tig0021860:56638-56657 | None:intergenic | 40.0% |
| TTCAAAGAAGTGGGATGCAT+TGG | - | tig0021860:56668-56687 | None:intergenic | 40.0% | |
| GCATCTTGTCTTCAAAGAAG+TGG | - | tig0021860:56678-56697 | None:intergenic | 40.0% | |
| ! | CTTTGAAGACAAGATGCACT+TGG | + | tig0021860:56681-56700 | Msa1394550:intron | 40.0% |
| AGTAGCTGTATGGTTGTCAA+TGG | - | tig0021860:56728-56747 | None:intergenic | 40.0% | |
| AACAATCGCTAGTAGCTGTA+TGG | - | tig0021860:56738-56757 | None:intergenic | 40.0% | |
| ATCTCAGTAATTGATCAGCC+CGG | + | tig0021860:56805-56824 | Msa1394550:intron | 40.0% | |
| !! | AAATAGACTGCATTTTGGCC+CGG | - | tig0021860:56827-56846 | None:intergenic | 40.0% |
| TATGTTACCTACTCAATGGG+AGG | - | tig0021860:56939-56958 | None:intergenic | 40.0% | |
| !! | ATACTAAGGTTGATAGTCGG+TGG | + | tig0021860:56972-56991 | Msa1394550:intron | 40.0% |
| CGGAGCTAGATAAAAAGTTC+AGG | + | tig0021860:56995-57014 | Msa1394550:intron | 40.0% | |
| AACGTGTATTGAGAGAGAAG+AGG | + | tig0021860:57172-57191 | Msa1394550:intron | 40.0% | |
| ACGTGTATTGAGAGAGAAGA+GGG | + | tig0021860:57173-57192 | Msa1394550:intron | 40.0% | |
| ! | GGTTGTCGTTTGTAATGACT+TGG | - | tig0021860:57301-57320 | None:intergenic | 40.0% |
| GAAACAATTGCCAGATCGAA+TGG | + | tig0021860:57374-57393 | Msa1394550:intron | 40.0% | |
| ! | TTTTGTATTTGCTTCGGACC+AGG | - | tig0021860:57430-57449 | None:intergenic | 40.0% |
| TTGTACTCCCTCTTGGATTA+TGG | - | tig0021860:57549-57568 | None:intergenic | 40.0% | |
| ! | AATCCAAGAGGGAGTACAAA+AGG | + | tig0021860:57550-57569 | Msa1394550:intron | 40.0% |
| ! | ATCCAAGAGGGAGTACAAAA+GGG | + | tig0021860:57551-57570 | Msa1394550:intron | 40.0% |
| TTGCTAATGTACGTGACTCT+TGG | - | tig0021860:57736-57755 | None:intergenic | 40.0% | |
| CTTCTGCTTGATGGAAAGTA+AGG | - | tig0021860:58581-58600 | None:intergenic | 40.0% | |
| ! | AAAGCAGTGCACAAAGTGTT+TGG | + | tig0021860:58611-58630 | Msa1394550:CDS | 40.0% |
| GGGAGATAGAAGAAAAGTTG+TGG | + | tig0021860:58673-58692 | Msa1394550:CDS | 40.0% | |
| AGGCAAAGGGATCCTATAAA+TGG | + | tig0021860:58722-58741 | Msa1394550:CDS | 40.0% | |
| GTGACTGCTGCTGAATATTT+GGG | - | tig0021860:59015-59034 | None:intergenic | 40.0% | |
| TGTGACTGCTGCTGAATATT+TGG | - | tig0021860:59016-59035 | None:intergenic | 40.0% | |
| GAGCATACTTGTGACTAGTA+AGG | - | tig0021860:59258-59277 | None:intergenic | 40.0% | |
| CGAATTCAACCAGTGAAGAA+TGG | + | tig0021860:59444-59463 | Msa1394550:CDS | 40.0% | |
| AAATTTACGTGAAGGAGGGG+AGG | + | tig0021860:56353-56372 | Msa1394550:CDS | 45.0% | |
| ATGCGGTAAAAGACAAGAGG+AGG | + | tig0021860:56411-56430 | Msa1394550:intron | 45.0% | |
| !! | GAGAGTATCTCCTACATTCG+AGG | + | tig0021860:56577-56596 | Msa1394550:intron | 45.0% |
| GAAGTGGGATGCATTGGAAT+TGG | - | tig0021860:56662-56681 | None:intergenic | 45.0% | |
| GCGATTGTTGCAATCTCTGT+TGG | + | tig0021860:56749-56768 | Msa1394550:CDS | 45.0% | |
| TCTCAGTAATTGATCAGCCC+GGG | + | tig0021860:56806-56825 | Msa1394550:intron | 45.0% | |
| !! | AATAGACTGCATTTTGGCCC+GGG | - | tig0021860:56826-56845 | None:intergenic | 45.0% |
| GGGAGGAAGATCTAACCATA+CGG | - | tig0021860:56922-56941 | None:intergenic | 45.0% | |
| AGATCTTCCTCCCATTGAGT+AGG | + | tig0021860:56929-56948 | Msa1394550:intron | 45.0% | |
| TCAGCTGACCCAACTATTGA+AGG | - | tig0021860:57322-57341 | None:intergenic | 45.0% | |
| CGATCTGGCAATTGTTTCAC+AGG | - | tig0021860:57372-57391 | None:intergenic | 45.0% | |
| ! | TTCCCTTTTGTACTCCCTCT+TGG | - | tig0021860:57556-57575 | None:intergenic | 45.0% |
| !! | TGTTGAGTGTTGGAGAAGCA+CGG | - | tig0021860:57770-57789 | None:intergenic | 45.0% |
| !! | TGATATGGGAAGCACTCTCT+AGG | + | tig0021860:58702-58721 | Msa1394550:CDS | 45.0% |
| !! | GCACTTGCACCAATTGGTTT+TGG | - | tig0021860:58823-58842 | None:intergenic | 45.0% |
| TCTGCTCTAACTTTCCCTTG+AGG | - | tig0021860:58848-58867 | None:intergenic | 45.0% | |
| ! | AAGAATGGGAGCATGGAAGA+AGG | + | tig0021860:59459-59478 | Msa1394550:CDS | 45.0% |
| !!! | AATTTTGATTTTAAAATTAT+AGG | - | tig0021860:56462-56481 | None:intergenic | 5.0% |
| !! | TAGTATTTAAATTAAATATT+AGG | + | tig0021860:57470-57489 | Msa1394550:intron | 5.0% |
| AAGACAAGAGGAGGAGCTGT+AGG | + | tig0021860:56420-56439 | Msa1394550:intron | 50.0% | |
| !! | CTAAGGTTGATAGTCGGTGG+CGG | + | tig0021860:56975-56994 | Msa1394550:intron | 50.0% |
| TACGGAAAGGGGAATCATCG+TGG | + | tig0021860:57268-57287 | Msa1394550:CDS | 50.0% | |
| !! | TTGCCAGATCGAATGGGTTG+TGG | + | tig0021860:57381-57400 | Msa1394550:intron | 50.0% |
| !! | TGCCAGATCGAATGGGTTGT+GGG | + | tig0021860:57382-57401 | Msa1394550:intron | 50.0% |
| ! | GGGAGTACAAAAGGGAAGTG+CGG | + | tig0021860:57559-57578 | Msa1394550:intron | 50.0% |
| !! | GGAAGCACTCTCTAGGCAAA+GGG | + | tig0021860:58709-58728 | Msa1394550:CDS | 50.0% |
| GCTCTAACTTTCCCTTGAGG+TGG | - | tig0021860:58845-58864 | None:intergenic | 50.0% | |
| ACCAGTGAAGAATGGGAGCA+TGG | + | tig0021860:59452-59471 | Msa1394550:CDS | 50.0% | |
| TCCATGCTCCCATTCTTCAC+TGG | - | tig0021860:59456-59475 | None:intergenic | 50.0% | |
| ! | GAGCATGGAAGAAGGCACAT+GGG | + | tig0021860:59467-59486 | Msa1394550:CDS | 50.0% |
| ! | ATGGAAGAAGGCACATGGGT+TGG | + | tig0021860:59471-59490 | Msa1394550:CDS | 50.0% |
| ! | GAGGGGAGGTATGTATGTGC+TGG | + | tig0021860:56367-56386 | Msa1394550:intron | 55.0% |
| GCACTTGGCATATCCATGCG+CGG | + | tig0021860:56696-56715 | Msa1394550:intron | 55.0% | |
| ! | TGTGCTTGCTGAGCAGCAGA+TGG | - | tig0021860:56784-56803 | None:intergenic | 55.0% |
| TAGTTGGGTCAGCTGATCGC+CGG | + | tig0021860:57326-57345 | Msa1394550:CDS | 55.0% | |
| TCTCCCAATCCGCAACCTTC+CGG | - | tig0021860:57348-57367 | None:intergenic | 55.0% | |
| !! | GCCAGATCGAATGGGTTGTG+GGG | + | tig0021860:57383-57402 | Msa1394550:intron | 55.0% |
| ATTTGCTTCGGACCAGGCCA+AGG | - | tig0021860:57424-57443 | None:intergenic | 55.0% | |
| GCGCAGCATGCAAGCATCAA+AGG | + | tig0021860:58525-58544 | Msa1394550:CDS | 55.0% | |
| !! | GGGAAGCACTCTCTAGGCAA+AGG | + | tig0021860:58708-58727 | Msa1394550:CDS | 55.0% |
| GAGGTGGCACTTGCACCAAT+TGG | - | tig0021860:58829-58848 | None:intergenic | 55.0% | |
| TTGGTGCAAGTGCCACCTCA+AGG | + | tig0021860:58830-58849 | Msa1394550:CDS | 55.0% | |
| TGGTGCAAGTGCCACCTCAA+GGG | + | tig0021860:58831-58850 | Msa1394550:CDS | 55.0% | |
| ! | GGAGCATGGAAGAAGGCACA+TGG | + | tig0021860:59466-59485 | Msa1394550:CDS | 55.0% |
| !! | TCAATGGACTGCACCGCGCA+TGG | - | tig0021860:56712-56731 | None:intergenic | 60.0% |
| AGCTGATCGCCGGAAGGTTG+CGG | + | tig0021860:57336-57355 | Msa1394550:CDS | 60.0% | |
| ATCGCCGGAAGGTTGCGGAT+TGG | + | tig0021860:57341-57360 | Msa1394550:CDS | 60.0% | |
| TCGCCGGAAGGTTGCGGATT+GGG | + | tig0021860:57342-57361 | Msa1394550:CDS | 60.0% | |
| GCCCCACAACCCATTCGATC+TGG | - | tig0021860:57387-57406 | None:intergenic | 60.0% | |
| !! | TCGAATGGGTTGTGGGGCCA+CGG | + | tig0021860:57389-57408 | Msa1394550:intron | 60.0% |
| GGCCACGGAGGATTGAACCT+TGG | + | tig0021860:57404-57423 | Msa1394550:intron | 60.0% | |
| GGCCAAGGTTCAATCCTCCG+TGG | - | tig0021860:57409-57428 | None:intergenic | 60.0% | |
| CGGAGGATTGAACCTTGGCC+TGG | + | tig0021860:57409-57428 | Msa1394550:intron | 60.0% | |
| TGGGTCAGCTGATCGCCGGA+AGG | + | tig0021860:57330-57349 | Msa1394550:CDS | 65.0% | |
| !! | AATGGGTTGTGGGGCCACGG+AGG | + | tig0021860:57392-57411 | Msa1394550:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021860 | gene | 56336 | 59547 | 56336 | ID=Msa1394550;Name=Msa1394550 |
| tig0021860 | mRNA | 56336 | 59547 | 56336 | ID=Msa1394550-mRNA-1;Parent=Msa1394550;Name=Msa1394550-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.2|1|1|5|0|327 |
| tig0021860 | exon | 56336 | 56374 | 56336 | ID=Msa1394550-mRNA-1:exon:14415;Parent=Msa1394550-mRNA-1 |
| tig0021860 | exon | 56724 | 56810 | 56724 | ID=Msa1394550-mRNA-1:exon:14416;Parent=Msa1394550-mRNA-1 |
| tig0021860 | exon | 57217 | 57371 | 57217 | ID=Msa1394550-mRNA-1:exon:14417;Parent=Msa1394550-mRNA-1 |
| tig0021860 | exon | 58481 | 59075 | 58481 | ID=Msa1394550-mRNA-1:exon:14418;Parent=Msa1394550-mRNA-1 |
| tig0021860 | exon | 59440 | 59547 | 59440 | ID=Msa1394550-mRNA-1:exon:14419;Parent=Msa1394550-mRNA-1 |
| tig0021860 | CDS | 56336 | 56374 | 56336 | ID=Msa1394550-mRNA-1:cds;Parent=Msa1394550-mRNA-1 |
| tig0021860 | CDS | 56724 | 56810 | 56724 | ID=Msa1394550-mRNA-1:cds;Parent=Msa1394550-mRNA-1 |
| tig0021860 | CDS | 57217 | 57371 | 57217 | ID=Msa1394550-mRNA-1:cds;Parent=Msa1394550-mRNA-1 |
| tig0021860 | CDS | 58481 | 59075 | 58481 | ID=Msa1394550-mRNA-1:cds;Parent=Msa1394550-mRNA-1 |
| tig0021860 | CDS | 59440 | 59547 | 59440 | ID=Msa1394550-mRNA-1:cds;Parent=Msa1394550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
