Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394790 | XP_013442392.1 | 91.860 | 172 | 14 | 0 | 3 | 174 | 1 | 172 | 1.01e-112 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394790 | A0A072TGE6 | 91.860 | 172 | 14 | 0 | 3 | 174 | 1 | 172 | 4.84e-113 | 328 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1394790 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394790 | MtrunA17_Chr5g0421971 | 91.860 | 172 | 14 | 0 | 3 | 174 | 1 | 172 | 9.32e-117 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394790 | AT5G05330.1 | 42.515 | 167 | 76 | 5 | 2 | 159 | 32 | 187 | 2.44e-30 | 110 |
| Msa1394790 | AT5G05330.3 | 38.922 | 167 | 74 | 6 | 2 | 159 | 32 | 179 | 1.28e-22 | 90.1 |
| Msa1394790 | AT5G05330.2 | 37.121 | 132 | 65 | 4 | 37 | 159 | 2 | 124 | 1.72e-16 | 72.8 |
Find 51 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCTGTTTCAAAGCTTCT+TGG | 0.215238 | tig0021888:+97629 | None:intergenic |
| GGAGAAGAAGAGTTAGAAAA+AGG | 0.281580 | tig0021888:-99726 | Msa1394790:CDS |
| GTGAGGAATGTTACATAAAA+AGG | 0.291799 | tig0021888:+99397 | None:intergenic |
| CCTCATGCTCGTGCTCTTGA+TGG | 0.300970 | tig0021888:-99691 | Msa1394790:CDS |
| TTCATCAAATGTTGAATGTT+TGG | 0.319797 | tig0021888:+99444 | None:intergenic |
| ATATATATACCATTTGAAAA+AGG | 0.336282 | tig0021888:+99663 | None:intergenic |
| AATGTTTGGCCGAGTTCGCC+TGG | 0.350229 | tig0021888:+99458 | None:intergenic |
| TGTTTCTCATGCTAGAGAAT+TGG | 0.360591 | tig0021888:-97662 | Msa1394790:CDS |
| ATTATAATATTGAACTTGAT+AGG | 0.361065 | tig0021888:-97869 | Msa1394790:CDS |
| TAAAGTTTCTGTGTTGTTGC+AGG | 0.366820 | tig0021888:-96383 | Msa1394790:three_prime_UTR |
| CTTCTCCGTGCCATCAGCAT+TGG | 0.388133 | tig0021888:+99742 | None:intergenic |
| ATTCAATTCAAAAGGTTACT+TGG | 0.396107 | tig0021888:-99489 | Msa1394790:CDS |
| GGATGCTGATGGGATCATTA+AGG | 0.400417 | tig0021888:-97611 | Msa1394790:intron |
| ACTGGTTGAGATTCTTGATA+AGG | 0.406697 | tig0021888:-96804 | Msa1394790:intron |
| ATATTGAACTTGATAGGATA+GGG | 0.419391 | tig0021888:-97863 | Msa1394790:CDS |
| TATGACTTGTTATTTAATGA+AGG | 0.423757 | tig0021888:-96618 | Msa1394790:intron |
| CCAACAAGATTCAATTCAAA+AGG | 0.430763 | tig0021888:-99497 | Msa1394790:CDS |
| AGATTCTCTAAAGATCATTT+CGG | 0.433090 | tig0021888:+96678 | None:intergenic |
| AATATTGAACTTGATAGGAT+AGG | 0.444990 | tig0021888:-97864 | Msa1394790:CDS |
| ATAGGATAGGGTTTGAAAAG+TGG | 0.454750 | tig0021888:-97851 | Msa1394790:CDS |
| ACACCAAGAAGCTTTGAAAC+AGG | 0.456775 | tig0021888:-97632 | Msa1394790:CDS |
| GGTTACTTGGAATCGTTCCC+AGG | 0.456873 | tig0021888:-99476 | Msa1394790:CDS |
| AAAAGGCGATAAGGCGAAAT+GGG | 0.467083 | tig0021888:+99414 | None:intergenic |
| CCGCTGTATAACGTTGCAGC+TGG | 0.467937 | tig0021888:-96323 | Msa1394790:three_prime_UTR |
| TATTGTGCTTAGTCGTACTT+TGG | 0.493405 | tig0021888:-96206 | Msa1394790:three_prime_UTR |
| TCTCTAGCATGAGAAACAAA+TGG | 0.535184 | tig0021888:+97667 | None:intergenic |
| AAGCAGATCGCGCCACTAAG+AGG | 0.539311 | tig0021888:+96416 | None:intergenic |
| TATCAGGGAAAGCTTCATGA+AGG | 0.540658 | tig0021888:-97907 | Msa1394790:intron |
| GGTACTCAGCAAAAGCAAAC+CGG | 0.542445 | tig0021888:+96437 | None:intergenic |
| TAACGTTGCAGCTGGATTCG+TGG | 0.544655 | tig0021888:-96315 | Msa1394790:three_prime_UTR |
| GGCGATAAGGCGAAATGGGT+TGG | 0.554242 | tig0021888:+99418 | None:intergenic |
| ATGTTTGGCCGAGTTCGCCT+GGG | 0.560956 | tig0021888:+99459 | None:intergenic |
| ATCAACCAATGCTGATGGCA+CGG | 0.570517 | tig0021888:-99747 | Msa1394790:exon |
| CAGCTGCAACGTTATACAGC+GGG | 0.574728 | tig0021888:+96324 | None:intergenic |
| ATGAAGCATGAAAAGAGTAC+CGG | 0.577332 | tig0021888:-96456 | Msa1394790:three_prime_UTR |
| AAGAGCACGAGCATGAGGTA+TGG | 0.582268 | tig0021888:+99696 | None:intergenic |
| CTTTGAAACAGGATGCTGAT+GGG | 0.589300 | tig0021888:-97621 | Msa1394790:CDS |
| CTTCATGAAGGGTCAAGACG+TGG | 0.592712 | tig0021888:-97895 | Msa1394790:CDS |
| ACAATAATGCATATCAGCCA+AGG | 0.611858 | tig0021888:+99524 | None:intergenic |
| GATCAATCAACCAATGCTGA+TGG | 0.613091 | tig0021888:-99752 | Msa1394790:exon |
| GCTTTGAAACAGGATGCTGA+TGG | 0.615619 | tig0021888:-97622 | Msa1394790:CDS |
| CCATCAAGAGCACGAGCATG+AGG | 0.616092 | tig0021888:+99691 | None:intergenic |
| ATCAGGGAAAGCTTCATGAA+GGG | 0.616747 | tig0021888:-97906 | Msa1394790:intron |
| CTAAGCACAATACAAAGAGA+AGG | 0.644348 | tig0021888:+96217 | None:intergenic |
| GTATGGAGCAGATTCACCAC+TGG | 0.653372 | tig0021888:-96822 | Msa1394790:CDS |
| GTGTATGTAGTGAAACATGT+GGG | 0.656930 | tig0021888:-99563 | Msa1394790:intron |
| GATATGCACTGCAATCTGCA+AGG | 0.661243 | tig0021888:-96263 | Msa1394790:three_prime_UTR |
| TTATCAAGAATCTCAACCAG+TGG | 0.666090 | tig0021888:+96806 | None:intergenic |
| GATCTTTAGAGAATCTTCAG+CGG | 0.684407 | tig0021888:-96671 | Msa1394790:CDS |
| TGTGTATGTAGTGAAACATG+TGG | 0.688569 | tig0021888:-99564 | Msa1394790:intron |
| CCAGCTGCAACGTTATACAG+CGG | 0.718372 | tig0021888:+96323 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAACATAATATTCAATTT+TGG | - | tig0021888:99246-99265 | Msa1394790:intron | 10.0% |
| !! | ATATATATACCATTTGAAAA+AGG | + | tig0021888:96308-96327 | None:intergenic | 15.0% |
| !! | AAAATGAAATAAAGTAGAAA+AGG | + | tig0021888:96348-96367 | None:intergenic | 15.0% |
| !! | AGAAAAAGAAGAAATATATT+TGG | - | tig0021888:97186-97205 | Msa1394790:intron | 15.0% |
| !!! | CTTTAACTAAATTTTAACAA+AGG | - | tig0021888:97321-97340 | Msa1394790:intron | 15.0% |
| !!! | ATAGTGTTTCTTTTATATAT+AGG | - | tig0021888:97443-97462 | Msa1394790:intron | 15.0% |
| !! | TTACATTAAAAATATGCTAA+AGG | - | tig0021888:97776-97795 | Msa1394790:intron | 15.0% |
| !!! | ATTTTCAAGTTTGATTTTTA+TGG | - | tig0021888:98003-98022 | Msa1394790:intron | 15.0% |
| !! | ATTATAATATTGAACTTGAT+AGG | - | tig0021888:98099-98118 | Msa1394790:intron | 15.0% |
| !! | TATATATGGAAATAAAGTTA+GGG | + | tig0021888:98181-98200 | None:intergenic | 15.0% |
| !! | ATATATATGGAAATAAAGTT+AGG | + | tig0021888:98182-98201 | None:intergenic | 15.0% |
| !! | TATGATCACATATATATATA+TGG | + | tig0021888:98195-98214 | None:intergenic | 15.0% |
| !!! | TGATTATTTTAGATAAAGTA+TGG | - | tig0021888:99129-99148 | Msa1394790:intron | 15.0% |
| !!! | AAATTAGAATCTGCATTTTT+TGG | - | tig0021888:96703-96722 | Msa1394790:intron | 20.0% |
| !! | TCAAATAAAGAAGGAAAATA+TGG | + | tig0021888:96818-96837 | None:intergenic | 20.0% |
| !! | AGTTATAAACAAGATTGAAT+AGG | + | tig0021888:96936-96955 | None:intergenic | 20.0% |
| !!! | TTTTCTACTATTTTCAAAAG+TGG | + | tig0021888:97138-97157 | None:intergenic | 20.0% |
| !!! | ATTTTATTCCTAATTTCACT+TGG | - | tig0021888:97346-97365 | Msa1394790:intron | 20.0% |
| !! | AAAAGGACTATAAGTAATTT+AGG | - | tig0021888:97893-97912 | Msa1394790:CDS | 20.0% |
| !! | TATCATACTTATAAACAAGA+TGG | + | tig0021888:97959-97978 | None:intergenic | 20.0% |
| !!! | TCTTGTTTATAAGTATGATA+TGG | - | tig0021888:97959-97978 | Msa1394790:intron | 20.0% |
| !! | AAATTAGATCAAGATTGAAT+AGG | + | tig0021888:97987-98006 | None:intergenic | 20.0% |
| !!! | ACTATATAGTTTTCTTTATC+AGG | - | tig0021888:98045-98064 | Msa1394790:intron | 20.0% |
| !!! | CTATATAGTTTTCTTTATCA+GGG | - | tig0021888:98046-98065 | Msa1394790:intron | 20.0% |
| !! | GATGAAAATTGTTATATATG+AGG | - | tig0021888:98547-98566 | Msa1394790:intron | 20.0% |
| !!! | TATGACTTGTTATTTAATGA+AGG | - | tig0021888:99350-99369 | Msa1394790:intron | 20.0% |
| !! | ATTCAATACATGAAAAGATA+CGG | + | tig0021888:99393-99412 | None:intergenic | 20.0% |
| ! | ATTCAATTCAAAAGGTTACT+TGG | - | tig0021888:96479-96498 | Msa1394790:intron | 25.0% |
| ! | TTCATCAAATGTTGAATGTT+TGG | + | tig0021888:96527-96546 | None:intergenic | 25.0% |
| ! | GTAACATTTAACACTAAAGA+TGG | + | tig0021888:96611-96630 | None:intergenic | 25.0% |
| ! | AATATGATCTAATTGAGATG+CGG | - | tig0021888:96884-96903 | Msa1394790:intron | 25.0% |
| !! | AAAAAAAGTACGAACTTCAT+TGG | + | tig0021888:97081-97100 | None:intergenic | 25.0% |
| !! | TATTTTCAAAAGTGGAGTAA+CGG | + | tig0021888:97130-97149 | None:intergenic | 25.0% |
| !! | CTTTTATATATAGGTGTTAG+TGG | - | tig0021888:97452-97471 | Msa1394790:intron | 25.0% |
| ! | TCGTTGAATTTGTAATTAGT+GGG | + | tig0021888:97552-97571 | None:intergenic | 25.0% |
| ! | CATTAAAAATATGCTAAAGG+AGG | - | tig0021888:97779-97798 | Msa1394790:intron | 25.0% |
| !!! | GTAATTTGTTGCAGTAATTT+AGG | - | tig0021888:97808-97827 | Msa1394790:intron | 25.0% |
| ! | TCACTATGAAAGAAATGAAA+AGG | - | tig0021888:97876-97895 | Msa1394790:CDS | 25.0% |
| !! | GACTATAAGTAATTTAGGAT+TGG | - | tig0021888:97898-97917 | Msa1394790:CDS | 25.0% |
| ! | ACTTATAAACAAGATGGAAT+AGG | + | tig0021888:97953-97972 | None:intergenic | 25.0% |
| ! | AATATTGAACTTGATAGGAT+AGG | - | tig0021888:98104-98123 | Msa1394790:intron | 25.0% |
| ! | ATATTGAACTTGATAGGATA+GGG | - | tig0021888:98105-98124 | Msa1394790:intron | 25.0% |
| ! | TATGTGATCATAAACGTAAT+TGG | - | tig0021888:98203-98222 | Msa1394790:intron | 25.0% |
| ! | GTCTGTATACAAGAAATTAT+CGG | - | tig0021888:98828-98847 | Msa1394790:intron | 25.0% |
| ! | TTTCGTTTCATCAAAATCAA+AGG | + | tig0021888:99079-99098 | None:intergenic | 25.0% |
| ! | GATTCTTGATAAGGTTATTA+AGG | - | tig0021888:99173-99192 | Msa1394790:intron | 25.0% |
| !!! | TCAATTTTGGTTTGTTTGAA+TGG | - | tig0021888:99259-99278 | Msa1394790:intron | 25.0% |
| !! | AGATTCTCTAAAGATCATTT+CGG | + | tig0021888:99293-99312 | None:intergenic | 25.0% |
| ! | TGAATGAACAATCATTTCAT+AGG | - | tig0021888:99408-99427 | Msa1394790:intron | 25.0% |
| GAGAAGAAGAGTTAGAAAAA+GGG | - | tig0021888:96243-96262 | Msa1394790:three_prime_UTR | 30.0% | |
| ! | CCTTTTGAATTGAATCTTGT+TGG | + | tig0021888:96474-96493 | None:intergenic | 30.0% |
| CCAACAAGATTCAATTCAAA+AGG | - | tig0021888:96471-96490 | Msa1394790:intron | 30.0% | |
| TGTTACATAAAAAGGCGATA+AGG | + | tig0021888:96566-96585 | None:intergenic | 30.0% | |
| GTGAGGAATGTTACATAAAA+AGG | + | tig0021888:96574-96593 | None:intergenic | 30.0% | |
| ACATATCCTACATGCAAATT+TGG | + | tig0021888:96792-96811 | None:intergenic | 30.0% | |
| AGGACAATGTCAAATAAAGA+AGG | + | tig0021888:96827-96846 | None:intergenic | 30.0% | |
| CAATGCAGCAAAATAGATAT+AGG | + | tig0021888:96847-96866 | None:intergenic | 30.0% | |
| GATTGTAACCAAGTGAAATT+AGG | + | tig0021888:97357-97376 | None:intergenic | 30.0% | |
| ATTTCACTTGGTTACAATCT+TGG | - | tig0021888:97358-97377 | Msa1394790:intron | 30.0% | |
| GCTAATGGTAGTTGAAAATA+TGG | + | tig0021888:97404-97423 | None:intergenic | 30.0% | |
| AGAAACACTATACATGACAA+AGG | + | tig0021888:97434-97453 | None:intergenic | 30.0% | |
| !! | TGTTAGTGGTTAGTTTGTTA+GGG | - | tig0021888:97466-97485 | Msa1394790:intron | 30.0% |
| ! | AATTGAGGCATTAAACAAGA+AGG | + | tig0021888:97529-97548 | None:intergenic | 30.0% |
| TTTGTAATTAGTGGGAATTG+AGG | + | tig0021888:97544-97563 | None:intergenic | 30.0% | |
| GTCGTTGAATTTGTAATTAG+TGG | + | tig0021888:97553-97572 | None:intergenic | 30.0% | |
| AAATTTCGACATAATTGAGG+AGG | + | tig0021888:97721-97740 | None:intergenic | 30.0% | |
| TCCTCAATTATGTCGAAATT+TGG | - | tig0021888:97720-97739 | Msa1394790:intron | 30.0% | |
| ACCAAATTTCGACATAATTG+AGG | + | tig0021888:97724-97743 | None:intergenic | 30.0% | |
| ! | TTGTTGCAGTAATTTAGGAT+TGG | - | tig0021888:97813-97832 | Msa1394790:intron | 30.0% |
| !! | GTTTGATCGATTTGTGTATT+TGG | - | tig0021888:97924-97943 | Msa1394790:intron | 30.0% |
| AAAGTGGAAAAATATGTCGA+AGG | - | tig0021888:98133-98152 | Msa1394790:intron | 30.0% | |
| TTTGTGACATGTTTGAATGT+TGG | - | tig0021888:98596-98615 | Msa1394790:intron | 30.0% | |
| TAAGAATGGAGAAATTGTTG+TGG | - | tig0021888:98735-98754 | Msa1394790:intron | 30.0% | |
| TCTTGTATACAGACTAAACT+CGG | + | tig0021888:98822-98841 | None:intergenic | 30.0% | |
| AATTATCGGAAAAGAAGTTG+AGG | - | tig0021888:98842-98861 | Msa1394790:intron | 30.0% | |
| ! | GATTTCCTTTTCAACCAAAA+TGG | + | tig0021888:98902-98921 | None:intergenic | 30.0% |
| !! | TTTTGGTTGAAAAGGAAATC+TGG | - | tig0021888:98902-98921 | Msa1394790:intron | 30.0% |
| !! | ATTCTTTTGAGGAGATTTTG+TGG | - | tig0021888:98982-99001 | Msa1394790:intron | 30.0% |
| AAATCAAAGGATAAGAAACG+AGG | + | tig0021888:99066-99085 | None:intergenic | 30.0% | |
| ATACAAACTCATCTTTGACA+TGG | - | tig0021888:99106-99125 | Msa1394790:intron | 30.0% | |
| TCTCATCAAATTAGTAACGT+TGG | - | tig0021888:99431-99450 | Msa1394790:CDS | 30.0% | |
| AAATTAGTAACGTTGGACTA+TGG | - | tig0021888:99438-99457 | Msa1394790:CDS | 30.0% | |
| GACTATGGATATTTGTATCA+TGG | - | tig0021888:99453-99472 | Msa1394790:CDS | 30.0% | |
| ! | ATGTTGTTTGATTGTTGTAC+AGG | - | tig0021888:99485-99504 | Msa1394790:CDS | 30.0% |
| GGAGAAGAAGAGTTAGAAAA+AGG | - | tig0021888:96242-96261 | Msa1394790:three_prime_UTR | 35.0% | |
| !!! | ATGGAAGTGCCTTTTTCAAA+TGG | - | tig0021888:96296-96315 | Msa1394790:three_prime_UTR | 35.0% |
| TGTGTATGTAGTGAAACATG+TGG | - | tig0021888:96404-96423 | Msa1394790:three_prime_UTR | 35.0% | |
| GTGTATGTAGTGAAACATGT+GGG | - | tig0021888:96405-96424 | Msa1394790:three_prime_UTR | 35.0% | |
| ACAATAATGCATATCAGCCA+AGG | + | tig0021888:96447-96466 | None:intergenic | 35.0% | |
| GCTGTTCGATCAAGATTAAA+CGG | + | tig0021888:96730-96749 | None:intergenic | 35.0% | |
| ! | AAGTACGAACTTCATTGGTT+CGG | + | tig0021888:97076-97095 | None:intergenic | 35.0% |
| !! | GACAAAGGAAAAAGTGCTAA+TGG | + | tig0021888:97419-97438 | None:intergenic | 35.0% |
| !! | GTGTTAGTGGTTAGTTTGTT+AGG | - | tig0021888:97465-97484 | Msa1394790:intron | 35.0% |
| !! | GTTAGTGGTTAGTTTGTTAG+GGG | - | tig0021888:97467-97486 | Msa1394790:intron | 35.0% |
| !! | TTAGTGGTTAGTTTGTTAGG+GGG | - | tig0021888:97468-97487 | Msa1394790:intron | 35.0% |
| GCAACTTCTTCGATGAAAAA+CGG | + | tig0021888:97607-97626 | None:intergenic | 35.0% | |
| ATTCATGAATCAATGAGGAC+AGG | + | tig0021888:97682-97701 | None:intergenic | 35.0% | |
| TGGACATTCATGAATCAATG+AGG | + | tig0021888:97687-97706 | None:intergenic | 35.0% | |
| TTGAGGAGGAATATCAAACT+TGG | + | tig0021888:97707-97726 | None:intergenic | 35.0% | |
| GTATATGTGTATGTGTGTGT+AGG | - | tig0021888:97742-97761 | Msa1394790:intron | 35.0% | |
| ! | ATTGGAGTGTTTGACAACTA+TGG | - | tig0021888:97831-97850 | Msa1394790:intron | 35.0% |
| ATAGGATAGGGTTTGAAAAG+TGG | - | tig0021888:98117-98136 | Msa1394790:intron | 35.0% | |
| TATGGAAATAAAGTTAGGGC+AGG | + | tig0021888:98177-98196 | None:intergenic | 35.0% | |
| ! | CATAATCTCCTTTTCTCTTC+AGG | - | tig0021888:98270-98289 | Msa1394790:intron | 35.0% |
| TCTCTAGCATGAGAAACAAA+TGG | + | tig0021888:98304-98323 | None:intergenic | 35.0% | |
| TGTTTCTCATGCTAGAGAAT+TGG | - | tig0021888:98306-98325 | Msa1394790:intron | 35.0% | |
| TGAAGTGTATGTCATGAAGA+TGG | - | tig0021888:98440-98459 | Msa1394790:intron | 35.0% | |
| TCTATGTCTAGATTCAGTGT+TGG | - | tig0021888:98711-98730 | Msa1394790:intron | 35.0% | |
| !! | GATTCAGTGTTGGTTAAGAA+TGG | - | tig0021888:98721-98740 | Msa1394790:intron | 35.0% |
| TGAATATCTAGCATTCGTTG+TGG | - | tig0021888:98763-98782 | Msa1394790:intron | 35.0% | |
| CTTCTGTAACAGAGATGAAT+TGG | - | tig0021888:98786-98805 | Msa1394790:intron | 35.0% | |
| CTTGTATACAGACTAAACTC+GGG | + | tig0021888:98821-98840 | None:intergenic | 35.0% | |
| CTCAAAAGAATCCACCATAT+GGG | + | tig0021888:98973-98992 | None:intergenic | 35.0% | |
| TTGAACCACAGTCACTATAA+AGG | + | tig0021888:99009-99028 | None:intergenic | 35.0% | |
| TTATCAAGAATCTCAACCAG+TGG | + | tig0021888:99165-99184 | None:intergenic | 35.0% | |
| ACTGGTTGAGATTCTTGATA+AGG | - | tig0021888:99164-99183 | Msa1394790:intron | 35.0% | |
| ! | GATCTTTAGAGAATCTTCAG+CGG | - | tig0021888:99297-99316 | Msa1394790:intron | 35.0% |
| ! | ATGAAGCATGAAAAGAGTAC+CGG | - | tig0021888:99512-99531 | Msa1394790:CDS | 35.0% |
| ! | TAAAGTTTCTGTGTTGTTGC+AGG | - | tig0021888:99585-99604 | Msa1394790:intron | 35.0% |
| CTAAGCACAATACAAAGAGA+AGG | + | tig0021888:99754-99773 | None:intergenic | 35.0% | |
| TATTGTGCTTAGTCGTACTT+TGG | - | tig0021888:99762-99781 | Msa1394790:five_prime_UTR | 35.0% | |
| GATCAATCAACCAATGCTGA+TGG | - | tig0021888:96216-96235 | Msa1394790:three_prime_UTR | 40.0% | |
| !! | GTTTTCTGTTGCTATTGCCT+TGG | - | tig0021888:96427-96446 | Msa1394790:three_prime_UTR | 40.0% |
| AAAAGGCGATAAGGCGAAAT+GGG | + | tig0021888:96557-96576 | None:intergenic | 40.0% | |
| AAAAAGGCGATAAGGCGAAA+TGG | + | tig0021888:96558-96577 | None:intergenic | 40.0% | |
| ATGTTACTCAATACGCAGTC+AGG | - | tig0021888:96624-96643 | Msa1394790:three_prime_UTR | 40.0% | |
| TGTTACTCAATACGCAGTCA+GGG | - | tig0021888:96625-96644 | Msa1394790:three_prime_UTR | 40.0% | |
| CATTCACGTAGTTCAGACAT+AGG | + | tig0021888:96755-96774 | None:intergenic | 40.0% | |
| ATGTCTGAACTACGTGAATG+CGG | - | tig0021888:96755-96774 | Msa1394790:intron | 40.0% | |
| GGGAATCCAAATTTGCATGT+AGG | - | tig0021888:96783-96802 | Msa1394790:intron | 40.0% | |
| AGAAACCGAACCAAACTAAC+CGG | + | tig0021888:97035-97054 | None:intergenic | 40.0% | |
| TCAAAAGTGGAGTAACGGTT+CGG | + | tig0021888:97125-97144 | None:intergenic | 40.0% | |
| TCACTTGGTTACAATCTTGG+AGG | - | tig0021888:97361-97380 | Msa1394790:intron | 40.0% | |
| AGGGGGAGAAAATTTGTCAA+CGG | - | tig0021888:97485-97504 | Msa1394790:intron | 40.0% | |
| TATCAGGGAAAGCTTCATGA+AGG | - | tig0021888:98061-98080 | Msa1394790:intron | 40.0% | |
| ATCAGGGAAAGCTTCATGAA+GGG | - | tig0021888:98062-98081 | Msa1394790:intron | 40.0% | |
| GTGGAAAAATATGTCGAAGG+AGG | - | tig0021888:98136-98155 | Msa1394790:intron | 40.0% | |
| TTGCTTCTCCTGAAGAGAAA+AGG | + | tig0021888:98281-98300 | None:intergenic | 40.0% | |
| !! | ACACCAAGAAGCTTTGAAAC+AGG | - | tig0021888:98336-98355 | Msa1394790:intron | 40.0% |
| CATCCTGTTTCAAAGCTTCT+TGG | + | tig0021888:98342-98361 | None:intergenic | 40.0% | |
| !! | CTTTGAAACAGGATGCTGAT+GGG | - | tig0021888:98347-98366 | Msa1394790:intron | 40.0% |
| ! | AAAACTGAGCTGCTCCATTT+TGG | - | tig0021888:98885-98904 | Msa1394790:intron | 40.0% |
| !!! | CTGCTCCATTTTGGTTGAAA+AGG | - | tig0021888:98894-98913 | Msa1394790:intron | 40.0% |
| CCTCAAAAGAATCCACCATA+TGG | + | tig0021888:98974-98993 | None:intergenic | 40.0% | |
| !!! | CCATATGGTGGATTCTTTTG+AGG | - | tig0021888:98971-98990 | Msa1394790:intron | 40.0% |
| AAAGGATAAGAAACGAGGCA+AGG | + | tig0021888:99061-99080 | None:intergenic | 40.0% | |
| ! | TTTTGCTGAGTACCTCTTAG+TGG | - | tig0021888:99540-99559 | Msa1394790:CDS | 40.0% |
| ATCAACCAATGCTGATGGCA+CGG | - | tig0021888:96221-96240 | Msa1394790:three_prime_UTR | 45.0% | |
| TGGAATTGAGAGTGAGAGTG+AGG | + | tig0021888:96591-96610 | None:intergenic | 45.0% | |
| TGTCTTGACTGCGTGAATGT+GGG | + | tig0021888:96655-96674 | None:intergenic | 45.0% | |
| ATGTCTTGACTGCGTGAATG+TGG | + | tig0021888:96656-96675 | None:intergenic | 45.0% | |
| TCACGTAGTTCAGACATAGG+TGG | + | tig0021888:96752-96771 | None:intergenic | 45.0% | |
| TGTCTGAACTACGTGAATGC+GGG | - | tig0021888:96756-96775 | Msa1394790:intron | 45.0% | |
| !! | TTTGGATCGGTTCGCTTGAT+CGG | + | tig0021888:97002-97021 | None:intergenic | 45.0% |
| !! | CGGTTTGGTTTGGTTTGGAT+CGG | + | tig0021888:97015-97034 | None:intergenic | 45.0% |
| CGATCCAAACCAAACCAAAC+CGG | - | tig0021888:97013-97032 | Msa1394790:intron | 45.0% | |
| !! | CTAACCGGTTTGGTTTGGTT+TGG | + | tig0021888:97020-97039 | None:intergenic | 45.0% |
| !! | CCAAACTAACCGGTTTGGTT+TGG | + | tig0021888:97025-97044 | None:intergenic | 45.0% |
| ! | CCAAACCAAACCGGTTAGTT+TGG | - | tig0021888:97022-97041 | Msa1394790:intron | 45.0% |
| !! | CCAAACCGGTTAGTTTGGTT+CGG | - | tig0021888:97027-97046 | Msa1394790:intron | 45.0% |
| !!! | GTTCGGTTTGGATCGGATTT+TGG | + | tig0021888:97108-97127 | None:intergenic | 45.0% |
| !! | AGTAACGGTTCGGTTTGGAT+CGG | + | tig0021888:97115-97134 | None:intergenic | 45.0% |
| CATGAATCAATGAGGACAGG+TGG | + | tig0021888:97679-97698 | None:intergenic | 45.0% | |
| GAAATAAAGTTAGGGCAGGC+AGG | + | tig0021888:98173-98192 | None:intergenic | 45.0% | |
| !! | GCTTTGAAACAGGATGCTGA+TGG | - | tig0021888:98346-98365 | Msa1394790:intron | 45.0% |
| GGATGCTGATGGGATCATTA+AGG | - | tig0021888:98357-98376 | Msa1394790:intron | 45.0% | |
| GCAGATTCGATACGAAGTGT+TGG | + | tig0021888:98684-98703 | None:intergenic | 45.0% | |
| GTGGACCTTTATAGTGACTG+TGG | - | tig0021888:99001-99020 | Msa1394790:intron | 45.0% | |
| GGTACTCAGCAAAAGCAAAC+CGG | + | tig0021888:99534-99553 | None:intergenic | 45.0% | |
| GATATGCACTGCAATCTGCA+AGG | - | tig0021888:99705-99724 | Msa1394790:CDS | 45.0% | |
| ! | AAGAGCACGAGCATGAGGTA+TGG | + | tig0021888:96275-96294 | None:intergenic | 50.0% |
| GGTTACTTGGAATCGTTCCC+AGG | - | tig0021888:96492-96511 | Msa1394790:intron | 50.0% | |
| GTCTTGACTGCGTGAATGTG+GGG | + | tig0021888:96654-96673 | None:intergenic | 50.0% | |
| AACTACGTGAATGCGGGACT+AGG | - | tig0021888:96762-96781 | Msa1394790:intron | 50.0% | |
| ACTACGTGAATGCGGGACTA+GGG | - | tig0021888:96763-96782 | Msa1394790:intron | 50.0% | |
| CCGAACCAAACTAACCGGTT+TGG | + | tig0021888:97030-97049 | None:intergenic | 50.0% | |
| !! | AGTGGAGTAACGGTTCGGTT+TGG | + | tig0021888:97120-97139 | None:intergenic | 50.0% |
| CTTCATGAAGGGTCAAGACG+TGG | - | tig0021888:98073-98092 | Msa1394790:intron | 50.0% | |
| TCACCTGTGTGCTTCCCATA+TGG | - | tig0021888:98956-98975 | Msa1394790:intron | 50.0% | |
| GTATGGAGCAGATTCACCAC+TGG | - | tig0021888:99146-99165 | Msa1394790:intron | 50.0% | |
| CAGCTGCAACGTTATACAGC+GGG | + | tig0021888:99647-99666 | None:intergenic | 50.0% | |
| CCAGCTGCAACGTTATACAG+CGG | + | tig0021888:99648-99667 | None:intergenic | 50.0% | |
| TAACGTTGCAGCTGGATTCG+TGG | - | tig0021888:99653-99672 | Msa1394790:intron | 50.0% | |
| CTTCTCCGTGCCATCAGCAT+TGG | + | tig0021888:96229-96248 | None:intergenic | 55.0% | |
| ! | CCATCAAGAGCACGAGCATG+AGG | + | tig0021888:96280-96299 | None:intergenic | 55.0% |
| CCTCATGCTCGTGCTCTTGA+TGG | - | tig0021888:96277-96296 | Msa1394790:three_prime_UTR | 55.0% | |
| GAATCGTTCCCAGGCGAACT+CGG | - | tig0021888:96501-96520 | Msa1394790:intron | 55.0% | |
| ATGTTTGGCCGAGTTCGCCT+GGG | + | tig0021888:96512-96531 | None:intergenic | 55.0% | |
| AATGTTTGGCCGAGTTCGCC+TGG | + | tig0021888:96513-96532 | None:intergenic | 55.0% | |
| GGCGATAAGGCGAAATGGGT+TGG | + | tig0021888:96553-96572 | None:intergenic | 55.0% | |
| ! | CCACCATATGGGAAGCACAC+AGG | + | tig0021888:98962-98981 | None:intergenic | 55.0% |
| CCTGTGTGCTTCCCATATGG+TGG | - | tig0021888:98959-98978 | Msa1394790:intron | 55.0% | |
| AAGCAGATCGCGCCACTAAG+AGG | + | tig0021888:99555-99574 | None:intergenic | 55.0% | |
| CCGCTGTATAACGTTGCAGC+TGG | - | tig0021888:99645-99664 | Msa1394790:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021888 | gene | 96199 | 99791 | 96199 | ID=Msa1394790;Name=Msa1394790 |
| tig0021888 | mRNA | 96199 | 99791 | 96199 | ID=Msa1394790-mRNA-1;Parent=Msa1394790;Name=Msa1394790-mRNA-1;_AED=0.15;_eAED=0.15;_QI=30|1|1|1|0.83|0.71|7|320|174 |
| tig0021888 | exon | 96199 | 96483 | 96199 | ID=Msa1394790-mRNA-1:exon:14510;Parent=Msa1394790-mRNA-1 |
| tig0021888 | exon | 96619 | 96701 | 96619 | ID=Msa1394790-mRNA-1:exon:14509;Parent=Msa1394790-mRNA-1 |
| tig0021888 | exon | 96805 | 96849 | 96805 | ID=Msa1394790-mRNA-1:exon:14508;Parent=Msa1394790-mRNA-1 |
| tig0021888 | exon | 97612 | 97698 | 97612 | ID=Msa1394790-mRNA-1:exon:14507;Parent=Msa1394790-mRNA-1 |
| tig0021888 | exon | 97833 | 97923 | 97833 | ID=Msa1394790-mRNA-1:exon:14506;Parent=Msa1394790-mRNA-1 |
| tig0021888 | exon | 99411 | 99575 | 99411 | ID=Msa1394790-mRNA-1:exon:14505;Parent=Msa1394790-mRNA-1 |
| tig0021888 | exon | 99673 | 99791 | 99673 | ID=Msa1394790-mRNA-1:exon:14504;Parent=Msa1394790-mRNA-1 |
| tig0021888 | five_prime_UTR | 99762 | 99791 | 99762 | ID=Msa1394790-mRNA-1:five_prime_utr;Parent=Msa1394790-mRNA-1 |
| tig0021888 | CDS | 99673 | 99761 | 99673 | ID=Msa1394790-mRNA-1:cds;Parent=Msa1394790-mRNA-1 |
| tig0021888 | CDS | 99411 | 99575 | 99411 | ID=Msa1394790-mRNA-1:cds;Parent=Msa1394790-mRNA-1 |
| tig0021888 | CDS | 97833 | 97923 | 97833 | ID=Msa1394790-mRNA-1:cds;Parent=Msa1394790-mRNA-1 |
| tig0021888 | CDS | 97612 | 97698 | 97612 | ID=Msa1394790-mRNA-1:cds;Parent=Msa1394790-mRNA-1 |
| tig0021888 | CDS | 96805 | 96849 | 96805 | ID=Msa1394790-mRNA-1:cds;Parent=Msa1394790-mRNA-1 |
| tig0021888 | CDS | 96654 | 96701 | 96654 | ID=Msa1394790-mRNA-1:cds;Parent=Msa1394790-mRNA-1 |
| tig0021888 | three_prime_UTR | 96619 | 96653 | 96619 | ID=Msa1394790-mRNA-1:three_prime_utr;Parent=Msa1394790-mRNA-1 |
| tig0021888 | three_prime_UTR | 96199 | 96483 | 96199 | ID=Msa1394790-mRNA-1:three_prime_utr;Parent=Msa1394790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
