AlfalfaGEDB | Msa1395000

M. sativa cultivar zhongmu-4 / Msa1395000

KEGG: -
GO: -
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395000	AET04474.1	88.816	152	14	1	4	152	5	156	1.22e-85	258

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395000	G7L9K0	88.816	152	14	1	4	152	5	156	5.84e-86	258

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TFs/TRs:

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Gene ID	Type	Classification
Msa1395000	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 31 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACTTGTTACGAACAG+TGG	0.644687	tig0021904:+6147	Msa1395000:CDS
AGATGAGTCATCCCCAGAAG+AGG	0.591895	tig0021904:+6490	Msa1395000:CDS
AGCAACTCCAGCATGGCGCC+AGG	0.413779	tig0021904:+6029	Msa1395000:CDS
AGTCTACGGTCTCTCCAAAG+AGG	0.659563	tig0021904:+6387	Msa1395000:CDS
ATCCTCAAACTACGCCTCTT+TGG	0.326587	tig0021904:-6401	None:intergenic
ATCTGAATCAGAAACATCAA+TGG	0.539843	tig0021904:-6208	None:intergenic
CATAAAACTGGCTTCTCTTC+TGG	0.255261	tig0021904:-6054	None:intergenic
CCAAGACCAATTTCATTTGA+AGG	0.378872	tig0021904:-6545	None:intergenic
CCACATGCATTGCATAAAAC+TGG	0.410323	tig0021904:-6066	None:intergenic
CCTTCAAATGAAATTGGTCT+TGG	0.383519	tig0021904:+6545	Msa1395000:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTGAATCAGAAACATCAA+TGG	-	tig0021904:6211-6230	None:intergenic	30.0%
TTCATATTCATGCAAGTCTA+CGG	+	tig0021904:6373-6392	Msa1395000:CDS	30.0%
TGGACTAAGATACCAAAACT+GGG	+	tig0021904:6086-6105	Msa1395000:CDS	35.0%
TTTGGAAAACAACGTTTGAG+AGG	-	tig0021904:6129-6148	None:intergenic	35.0%
GAGGATTATCAATCAGAAGA+TGG	+	tig0021904:6418-6437	Msa1395000:CDS	35.0%
CCAAGACCAATTTCATTTGA+AGG	-	tig0021904:6548-6567	None:intergenic	35.0%
CCACATGCATTGCATAAAAC+TGG	-	tig0021904:6069-6088	None:intergenic	40.0%
GGACTAAGATACCAAAACTG+GGG	+	tig0021904:6087-6106	Msa1395000:CDS	40.0%
GCAGTTCTTCTTAAACCAGA+CGG	+	tig0021904:6569-6588	Msa1395000:CDS	40.0%
ATCCTCAAACTACGCCTCTT+TGG	-	tig0021904:6404-6423	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021904	gene	6018	6604	6018	ID=Msa1395000;Name=Msa1395000
tig0021904	mRNA	6018	6604	6018	ID=Msa1395000-mRNA-1;Parent=Msa1395000;Name=Msa1395000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|152
tig0021904	exon	6018	6234	6018	ID=Msa1395000-mRNA-1:exon:14669;Parent=Msa1395000-mRNA-1
tig0021904	exon	6363	6604	6363	ID=Msa1395000-mRNA-1:exon:14670;Parent=Msa1395000-mRNA-1
tig0021904	CDS	6018	6234	6018	ID=Msa1395000-mRNA-1:cds;Parent=Msa1395000-mRNA-1
tig0021904	CDS	6363	6604	6363	ID=Msa1395000-mRNA-1:cds;Parent=Msa1395000-mRNA-1

Gene Sequence

>Msa1395000

TTGATTTTTCCAGCAACTCCAGCATGGCGCCAGGGACCAGAAGAGAAGCCAGTTTTATGCAATGCATGTGGACTAAGATACCAAAACTGGGGAAATCTTGAAGATCATCCTCTCAAACGTTGTTTTCCAAAAGAACTTGTTACGAACAGTGGCAACAGTAGCAACAACAGTCTCAAAGAAAGTTCATCAACCATTGATGTTTCTGATTCAGATAATGATGAAAAAGATTCATATTCATGCAAGTCTACGGTCTCTCCAAAGAGGCGTAGTTTGAGGATTATCAATCAGAAGATGGAGAAGTTTCGACAAGAACTCATTGATGAGTTGAAAAATCATGAGATACCAGATGAGTCATCCCCAGAAGAGGCCTTATTGTTCGAAAATGTGAACAACTTCATACCTTCAAATGAAATTGGTCTTGGAGCAGTTCTTCTTAAACCAGACGGTTCTTCTATGTAG

Protein sequence

>Msa1395000

LIFPATPAWRQGPEEKPVLCNACGLRYQNWGNLEDHPLKRCFPKELVTNSGNSSNNSLKESSSTIDVSDSDNDEKDSYSCKSTVSPKRRSLRIINQKMEKFRQELIDELKNHEIPDESSPEEALLFENVNNFIPSNEIGLGAVLLKPDGSSM*