AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1395290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395290 MtrunA17_Chr6g0477261 59.718 355 120 5 224 556 293 646 3.45e-134 405
Msa1395290 MtrunA17_Chr6g0477261 86.842 76 10 0 149 224 1 76 4.86e-36 142
Msa1395290 MtrunA17_Chr2g0296781 64.537 313 98 4 224 524 404 715 1.49e-125 385
Msa1395290 MtrunA17_Chr2g0296781 74.054 185 48 0 40 224 3 187 1.85e-90 293
Msa1395290 MtrunA17_Chr1g0196541 60.751 293 103 5 224 510 404 690 5.29e-103 326
Msa1395290 MtrunA17_Chr1g0196541 56.284 183 80 0 40 222 3 185 3.58e-61 214
Msa1395290 MtrunA17_Chr6g0476441 50.352 284 98 5 316 557 1 283 2.38e-75 241
Msa1395290 MtrunA17_Chr5g0441581 36.260 262 155 6 224 478 432 688 6.39e-39 151
Msa1395290 MtrunA17_Chr5g0441581 35.238 210 120 5 20 223 15 214 1.03e-26 114
Msa1395290 MtrunA17_Chr6g0476431 61.628 86 33 0 40 125 3 88 1.76e-31 117
Msa1395290 MtrunA17_Chr3g0080351 30.693 202 125 5 201 402 460 646 1.92e-21 99.0
Msa1395290 MtrunA17_Chr2g0291581 36.313 179 100 6 204 377 453 622 3.46e-21 97.8
Msa1395290 MtrunA17_Chr2g0291581 28.125 224 147 6 34 256 71 281 3.24e-13 72.4
Msa1395290 MtrunA17_Chr1g0207551 38.961 154 87 2 225 378 445 591 4.94e-21 97.4
Msa1395290 MtrunA17_Chr1g0207551 25.316 237 157 5 31 257 31 257 9.31e-13 71.2
Msa1395290 MtrunA17_Chr6g0451441 32.000 200 126 5 2 195 52 247 3.22e-20 93.6
Msa1395290 MtrunA17_Chr5g0440451 31.579 190 122 5 223 411 457 639 4.61e-19 91.3
Msa1395290 MtrunA17_Chr2g0329031 28.340 247 144 7 40 278 20 241 1.50e-18 89.7
Msa1395290 MtrunA17_Chr2g0329031 31.646 158 100 3 224 381 417 566 7.29e-17 84.3
Msa1395290 MtrunA17_Chr7g0258861 25.692 253 166 7 31 268 7 252 2.42e-16 80.1
Msa1395290 MtrunA17_Chr2g0291591 26.407 231 156 7 33 257 63 285 7.32e-16 80.9
Msa1395290 MtrunA17_Chr3g0118611 31.034 174 107 5 225 397 356 517 2.18e-15 79.7
Msa1395290 MtrunA17_Chr1g0172041 31.818 110 74 1 290 399 3 111 5.50e-15 71.2
Msa1395290 MtrunA17_Chr5g0448761 30.065 153 101 2 224 376 479 625 9.94e-15 77.4
Msa1395290 MtrunA17_Chr5g0448761 26.961 204 137 7 31 224 57 258 1.93e-11 67.0
Msa1395290 MtrunA17_Chr8g0363841 27.941 204 139 4 30 225 10 213 6.24e-14 74.7
Msa1395290 MtrunA17_Chr2g0324011 24.514 257 179 7 31 276 7 259 2.65e-13 72.8
Msa1395290 MtrunA17_Chr5g0448511 32.215 149 93 4 224 371 251 392 1.27e-12 70.5
Msa1395290 MtrunA17_Chr3g0077731 45.370 108 46 4 429 524 1 107 2.89e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395290 AT4G15090.1 27.381 336 205 10 225 543 465 778 1.89e-23 105
Msa1395290 AT4G15090.1 26.749 243 149 9 31 257 48 277 6.67e-16 81.6
Msa1395290 AT4G15090.5 27.381 336 205 10 225 543 465 778 1.89e-23 105
Msa1395290 AT4G15090.5 26.749 243 149 9 31 257 48 277 6.67e-16 81.6
Msa1395290 AT4G15090.3 27.381 336 205 10 225 543 465 778 1.89e-23 105
Msa1395290 AT4G15090.3 26.749 243 149 9 31 257 48 277 6.67e-16 81.6
Msa1395290 AT4G15090.2 27.381 336 205 10 225 543 465 778 1.89e-23 105
Msa1395290 AT4G15090.2 26.749 243 149 9 31 257 48 277 6.67e-16 81.6
Msa1395290 AT4G15090.4 27.381 336 205 10 225 543 465 778 1.89e-23 105
Msa1395290 AT4G15090.4 26.749 243 149 9 31 257 48 277 6.67e-16 81.6
Msa1395290 AT3G22170.2 36.723 177 98 4 204 379 458 621 2.20e-23 105
Msa1395290 AT3G22170.1 36.723 177 98 4 204 379 458 621 2.20e-23 105
Msa1395290 AT1G76320.1 31.602 231 126 9 40 257 3 214 2.31e-21 99.0
Msa1395290 AT1G76320.1 33.750 160 97 4 224 383 401 551 2.15e-19 92.8
Msa1395290 AT1G76320.4 31.602 231 126 9 40 257 3 214 2.31e-21 99.0
Msa1395290 AT1G76320.4 33.750 160 97 4 224 383 401 551 2.15e-19 92.8
Msa1395290 AT1G76320.2 31.602 231 126 9 40 257 3 214 2.45e-21 98.6
Msa1395290 AT1G76320.2 33.750 160 97 4 224 383 401 551 2.18e-19 92.8
Msa1395290 AT1G76320.3 31.602 231 126 9 40 257 3 214 2.82e-21 98.6
Msa1395290 AT1G76320.3 33.750 160 97 4 224 383 401 551 3.51e-19 92.0
Msa1395290 AT1G52520.1 33.962 212 121 7 224 418 484 693 9.51e-21 96.7
Msa1395290 AT4G19990.3 33.333 183 107 5 224 402 412 583 1.61e-15 80.5
Msa1395290 AT4G19990.4 33.333 183 107 5 224 402 412 583 1.61e-15 80.5
Msa1395290 AT4G19990.5 33.333 183 107 5 224 402 412 583 1.66e-15 80.5
Msa1395290 AT4G19990.1 33.333 183 107 5 224 402 355 526 1.80e-15 80.1
Msa1395290 AT4G19990.6 33.333 183 107 5 224 402 412 583 1.80e-15 80.1
Msa1395290 AT4G19990.2 33.333 183 107 5 224 402 412 583 1.80e-15 80.1
Msa1395290 AT4G19990.7 33.333 183 107 5 224 402 426 597 2.21e-15 80.1
Msa1395290 AT1G80010.1 30.769 156 103 4 224 377 510 662 1.60e-14 77.0
Msa1395290 AT2G32250.2 30.921 152 94 3 224 373 408 550 2.41e-14 76.6
Msa1395290 AT2G32250.4 30.921 152 94 3 224 373 408 550 2.41e-14 76.6
Msa1395290 AT2G32250.5 30.921 152 94 3 224 373 408 550 2.43e-14 76.6
Msa1395290 AT2G32250.6 30.921 152 94 3 224 373 408 550 2.58e-14 76.6
Msa1395290 AT2G32250.1 30.921 152 94 3 224 373 408 550 2.58e-14 76.6
Msa1395290 AT2G32250.3 30.921 152 94 3 224 373 408 550 2.58e-14 76.6
Msa1395290 AT2G32250.7 30.921 152 94 3 224 373 367 509 2.68e-14 76.6
Msa1395290 AT2G32250.8 30.921 152 94 3 224 373 367 509 2.87e-14 76.6
Msa1395290 AT4G38180.1 29.936 157 96 3 224 376 488 634 2.03e-13 73.9
Msa1395290 AT4G38180.1 24.664 223 157 6 12 225 51 271 4.85e-11 66.2
Msa1395290 AT4G38170.1 29.936 157 104 3 224 380 253 403 2.49e-13 73.2
Msa1395290 AT2G27110.2 30.968 155 97 6 224 376 433 579 7.96e-12 68.6
Msa1395290 AT2G27110.1 30.968 155 97 6 224 376 433 579 7.96e-12 68.6

Find 79 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATTGGTGAATGCTTTC+TGG 0.174694 tig0021939:-53190 None:intergenic
TCACTCATAGGTATTGAATT+TGG 0.197997 tig0021939:-54194 None:intergenic
AAGGAAAACAAGGCTGATTT+TGG 0.221363 tig0021939:+53113 Msa1395290:CDS
CAAGAGTTATGCCCAATCTA+TGG 0.242427 tig0021939:+51884 Msa1395290:CDS
ATAGCTTGTATAAGTCATTT+TGG 0.245260 tig0021939:+53152 Msa1395290:CDS
AATGCATGTATTTCTTTAGA+TGG 0.249459 tig0021939:+52059 Msa1395290:CDS
CTAAATATAGTTCCAACTTT+AGG 0.250578 tig0021939:-51834 None:intergenic
ATCCACAATATTAATGTTAC+AGG 0.261830 tig0021939:-54259 None:intergenic
CTTTGTGTTCTTAAGTTAAC+AGG 0.271995 tig0021939:+53434 Msa1395290:CDS
CTAAAATAGCGTGCTTTGTC+AGG 0.272247 tig0021939:-52131 None:intergenic
TTCCTATTTCGAATTGTTAC+AGG 0.287780 tig0021939:+54344 Msa1395290:three_prime_UTR
TATGCCCAATCTATGGGTTT+TGG 0.292447 tig0021939:+51891 Msa1395290:CDS
CCTTTACTTCGAGTCGGTAT+AGG 0.330477 tig0021939:-53758 None:intergenic
ATTTGTTTAAAATGAGGAAT+TGG 0.340063 tig0021939:+53639 Msa1395290:CDS
CTCAAAGTCTTTCTCGTTGA+AGG 0.350216 tig0021939:-53357 None:intergenic
TCATACTTGCTTTGAGAGAT+TGG 0.350261 tig0021939:+53256 Msa1395290:CDS
GCCAGGGGATGCTTCTTTAG+AGG 0.353219 tig0021939:-53687 None:intergenic
TACCTGTAACAATTCGAAAT+AGG 0.377069 tig0021939:-54346 None:intergenic
TTCATGACTTGAGAATAAAA+TGG 0.385023 tig0021939:-54312 None:intergenic
AAGGGCATCCTCCTTCAAAA+AGG 0.389803 tig0021939:+53777 Msa1395290:CDS
CTTTACTTCGAGTCGGTATA+GGG 0.390578 tig0021939:-53757 None:intergenic
ACCTATGAGTGAAGTAAATC+AGG 0.391661 tig0021939:+54205 Msa1395290:CDS
TAACTCCAAAACCCATAGAT+TGG 0.409903 tig0021939:-51896 None:intergenic
AAGTGAGGAGACTACGACTT+GGG 0.414907 tig0021939:+52312 Msa1395290:CDS
GAATATGACATTTGGTGAAA+AGG 0.417591 tig0021939:+52268 Msa1395290:CDS
ACCTGATTTACTTCACTCAT+AGG 0.422951 tig0021939:-54206 None:intergenic
AATTAAAGATATAGTGTTTG+AGG 0.424835 tig0021939:+53331 Msa1395290:CDS
TATTCTCAAGTCATGAATCA+TGG 0.442758 tig0021939:+54318 Msa1395290:three_prime_UTR
AGGTATTGAATTTGGATTGA+AGG 0.452798 tig0021939:-54186 None:intergenic
AACTCCAAAACCCATAGATT+GGG 0.455626 tig0021939:-51895 None:intergenic
ATGATGATTTGTTTAAAATG+AGG 0.460118 tig0021939:+53633 Msa1395290:CDS
TAAAATGAGGAATTGGATCA+AGG 0.463705 tig0021939:+53646 Msa1395290:CDS
GAACCATCTTCCACAATGCC+AGG 0.467359 tig0021939:-53704 None:intergenic
ATTGAGAGATAAAGTTGAAA+AGG 0.468812 tig0021939:+53094 Msa1395290:CDS
TGTTGTTTGTTTCAATTCAA+AGG 0.475247 tig0021939:+53392 Msa1395290:CDS
TTCCTGTAACATTAATATTG+TGG 0.477639 tig0021939:+54257 Msa1395290:three_prime_UTR
CCACTGAGAGAAAATATAAG+AGG 0.477796 tig0021939:-53477 None:intergenic
GTTCAAGTAGTTGATCTAGT+TGG 0.480957 tig0021939:+53988 Msa1395290:CDS
GGTTATGAGAATATGACATT+TGG 0.482364 tig0021939:+52260 Msa1395290:CDS
CTATACCGACTCGAAGTAAA+GGG 0.485276 tig0021939:+53759 Msa1395290:CDS
GGTATTGAATTTGGATTGAA+GGG 0.485774 tig0021939:-54185 None:intergenic
CATTCAATCTAGCCATGCAC+TGG 0.485895 tig0021939:-52040 None:intergenic
CCTATACCGACTCGAAGTAA+AGG 0.491678 tig0021939:+53758 Msa1395290:CDS
TCAATGGTTGTTGAAGCAAA+TGG 0.495114 tig0021939:+52239 Msa1395290:CDS
TGGATCAAAGTATGTGAGTA+AGG 0.495408 tig0021939:+51980 Msa1395290:CDS
TCCCCTGGCATTGTGGAAGA+TGG 0.500694 tig0021939:+53701 Msa1395290:CDS
AAGAGTTATGCCCAATCTAT+GGG 0.502102 tig0021939:+51885 Msa1395290:CDS
ACCTCTAAAGAAGCATCCCC+TGG 0.505424 tig0021939:+53686 Msa1395290:CDS
AGGAGACTACGACTTGGGGC+TGG 0.514634 tig0021939:+52317 Msa1395290:CDS
ACTTGCTTTGAGAGATTGGA+AGG 0.519549 tig0021939:+53260 Msa1395290:CDS
ATTTGTATCTTCTGATGAAG+AGG 0.520293 tig0021939:+51743 Msa1395290:CDS
TGGATCCTCGTTTGAAAAGG+AGG 0.528466 tig0021939:+52168 Msa1395290:CDS
ATTCAAAGAATTTCAAGTGG+AGG 0.539575 tig0021939:+53214 Msa1395290:CDS
TAAAATAGCGTGCTTTGTCA+GGG 0.562727 tig0021939:-52130 None:intergenic
TTAGAACTCAATGATCAAGC+TGG 0.567016 tig0021939:+52191 Msa1395290:CDS
GAAACTATATAGATAAAGTG+AGG 0.579861 tig0021939:+52297 Msa1395290:CDS
TGAGAGAAAATATAAGAGGA+TGG 0.581159 tig0021939:-53473 None:intergenic
AGACATACCCTTGTTAAATG+TGG 0.581997 tig0021939:+53518 Msa1395290:CDS
AACCATCTTCCACAATGCCA+GGG 0.582504 tig0021939:-53703 None:intergenic
AGAAGCATCCCCTGGCATTG+TGG 0.590947 tig0021939:+53694 Msa1395290:CDS
ATTCAATCTAGCCATGCACT+GGG 0.603564 tig0021939:-52039 None:intergenic
GATGAAGAGGAAATCAAAGA+GGG 0.610064 tig0021939:+51756 Msa1395290:CDS
GATCAAAACCACATTTAACA+AGG 0.611615 tig0021939:-53526 None:intergenic
TGATGAAGAGGAAATCAAAG+AGG 0.613658 tig0021939:+51755 Msa1395290:CDS
AAAATGGAACTTAAATAACA+TGG 0.614120 tig0021939:-54296 None:intergenic
TAAAGTTGAAAAGGAAAACA+AGG 0.627416 tig0021939:+53103 Msa1395290:CDS
GGATGCCCTTTACTTCGAGT+CGG 0.636093 tig0021939:-53764 None:intergenic
AGTGAGGAGACTACGACTTG+GGG 0.641932 tig0021939:+52313 Msa1395290:CDS
AAAATTCAAAGAATTTCAAG+TGG 0.644675 tig0021939:+53211 Msa1395290:CDS
ATCAAAACCACATTTAACAA+GGG 0.648419 tig0021939:-53525 None:intergenic
AAAGTGAGGAGACTACGACT+TGG 0.649574 tig0021939:+52311 Msa1395290:CDS
ACTTGGGGCTGGAGATGCTG+AGG 0.650883 tig0021939:+52328 Msa1395290:CDS
TTTACTCTAGCATGTAGTCG+TGG 0.653028 tig0021939:+51960 Msa1395290:CDS
ACCATCTTCCACAATGCCAG+GGG 0.656502 tig0021939:-53702 None:intergenic
ACAGAGTGGAAATCAACAAG+AGG 0.665527 tig0021939:+53865 Msa1395290:CDS
CTGTTAACTTAAGAACACAA+AGG 0.666537 tig0021939:-53433 None:intergenic
CTTGTACTTTAGATGCACAC+AGG 0.674948 tig0021939:-53960 None:intergenic
TTTGGGATGAATGGACATGG+TGG 0.686298 tig0021939:+54146 Msa1395290:CDS
ACGACAACGGATCATTCACA+TGG 0.717284 tig0021939:-54463 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATACATATATGTTTTT+AGG + tig0021939:54109-54128 Msa1395290:intron 10.0%
!!! TTAATACATATATGTTTTTA+GGG + tig0021939:54110-54129 Msa1395290:intron 10.0%
!! GTCTAATATTCAATATTTAA+TGG + tig0021939:53932-53951 Msa1395290:intron 15.0%
!!! TAATACATATATGTTTTTAG+GGG + tig0021939:54111-54130 Msa1395290:intron 15.0%
!!! TTTTAGAAGTAGTAAGTTTT+TGG + tig0021939:52148-52167 Msa1395290:CDS 20.0%
!!! AAATTCTTTGAATTTTGCAT+TGG - tig0021939:53207-53226 None:intergenic 20.0%
!! AAAATTCAAAGAATTTCAAG+TGG + tig0021939:53211-53230 Msa1395290:CDS 20.0%
!! AATTAAAGATATAGTGTTTG+AGG + tig0021939:53331-53350 Msa1395290:CDS 20.0%
!!! AATTCAAAGGTATTTTATGT+AGG + tig0021939:53405-53424 Msa1395290:CDS 20.0%
!!! CATTTTAAACAAATCATCAT+CGG - tig0021939:53633-53652 None:intergenic 20.0%
!!! ATGATGATTTGTTTAAAATG+AGG + tig0021939:53633-53652 Msa1395290:CDS 20.0%
!!! ATTTGTTTAAAATGAGGAAT+TGG + tig0021939:53639-53658 Msa1395290:CDS 20.0%
!! AATATTCAATATTTAATGGC+AGG + tig0021939:53936-53955 Msa1395290:intron 20.0%
!! ATATTCAATATTTAATGGCA+GGG + tig0021939:53937-53956 Msa1395290:intron 20.0%
!!! AATACATATATGTTTTTAGG+GGG + tig0021939:54112-54131 Msa1395290:intron 20.0%
!! AAAATGGAACTTAAATAACA+TGG - tig0021939:54299-54318 None:intergenic 20.0%
! CTAAATATAGTTCCAACTTT+AGG - tig0021939:51837-51856 None:intergenic 25.0%
! AGTAACAAAAATACAGATGA+TGG + tig0021939:51927-51946 Msa1395290:CDS 25.0%
! GTAACAAAAATACAGATGAT+GGG + tig0021939:51928-51947 Msa1395290:CDS 25.0%
! AATGCATGTATTTCTTTAGA+TGG + tig0021939:52059-52078 Msa1395290:CDS 25.0%
!! AAGCATAAATTTTCGATCAA+TGG + tig0021939:52223-52242 Msa1395290:CDS 25.0%
! GAAACTATATAGATAAAGTG+AGG + tig0021939:52297-52316 Msa1395290:CDS 25.0%
! TTTGTGGCATATAATGAAAA+AGG + tig0021939:52754-52773 Msa1395290:intron 25.0%
!! TTGAACTTCATGATAATGAA+TGG + tig0021939:52900-52919 Msa1395290:intron 25.0%
! TATTTGATGAAAGAAATCGT+TGG + tig0021939:52933-52952 Msa1395290:intron 25.0%
! ATTTGATGAAAGAAATCGTT+GGG + tig0021939:52934-52953 Msa1395290:intron 25.0%
! ATTGAGAGATAAAGTTGAAA+AGG + tig0021939:53094-53113 Msa1395290:CDS 25.0%
! TAAAGTTGAAAAGGAAAACA+AGG + tig0021939:53103-53122 Msa1395290:CDS 25.0%
!!! ATAGCTTGTATAAGTCATTT+TGG + tig0021939:53152-53171 Msa1395290:CDS 25.0%
!! TGTTGTTTGTTTCAATTCAA+AGG + tig0021939:53392-53411 Msa1395290:CDS 25.0%
! ATCAAAACCACATTTAACAA+GGG - tig0021939:53528-53547 None:intergenic 25.0%
!!! ACTCTGTTGACTTTTTTTTT+GGG - tig0021939:53852-53871 None:intergenic 25.0%
! TTCCTGTAACATTAATATTG+TGG + tig0021939:54257-54276 Msa1395290:three_prime_UTR 25.0%
! ATCCACAATATTAATGTTAC+AGG - tig0021939:54262-54281 None:intergenic 25.0%
! TTCATGACTTGAGAATAAAA+TGG - tig0021939:54315-54334 None:intergenic 25.0%
ATTTGTATCTTCTGATGAAG+AGG + tig0021939:51743-51762 Msa1395290:CDS 30.0%
GAAGATGAAAAACCTAAAGT+TGG + tig0021939:51822-51841 Msa1395290:CDS 30.0%
! GGGTTTTTGTTAAAGGATTT+GGG - tig0021939:52022-52041 None:intergenic 30.0%
! TGGGTTTTTGTTAAAGGATT+TGG - tig0021939:52023-52042 None:intergenic 30.0%
GGTTATGAGAATATGACATT+TGG + tig0021939:52260-52279 Msa1395290:CDS 30.0%
! GAATATGACATTTGGTGAAA+AGG + tig0021939:52268-52287 Msa1395290:CDS 30.0%
!!! TCGCTTACGAAATGTTTTTT+GGG + tig0021939:52427-52446 Msa1395290:intron 30.0%
! TGTTTGGAATAACCAAGTAA+AGG - tig0021939:52624-52643 None:intergenic 30.0%
TTACTTGGTTATTCCAAACA+TGG + tig0021939:52624-52643 Msa1395290:intron 30.0%
ATCCATGAAAAATGCAATTG+CGG + tig0021939:52700-52719 Msa1395290:intron 30.0%
! TGTTTTCATAGACTCGTAAT+TGG - tig0021939:52804-52823 None:intergenic 30.0%
TTTGAGTAAGAGTGATTTCA+TGG + tig0021939:52850-52869 Msa1395290:intron 30.0%
! TCATGATAATGAATGGTTGA+AGG + tig0021939:52907-52926 Msa1395290:intron 30.0%
! CATGATAATGAATGGTTGAA+GGG + tig0021939:52908-52927 Msa1395290:intron 30.0%
! ATGATAATGAATGGTTGAAG+GGG + tig0021939:52909-52928 Msa1395290:intron 30.0%
! ATATGAAAGAGACACGTTTT+GGG + tig0021939:52964-52983 Msa1395290:intron 30.0%
!!! GTATGAACTCGTTTTTTTGA+TGG + tig0021939:53017-53036 Msa1395290:intron 30.0%
! ATTCAAAGAATTTCAAGTGG+AGG + tig0021939:53214-53233 Msa1395290:CDS 30.0%
CTGTTAACTTAAGAACACAA+AGG - tig0021939:53436-53455 None:intergenic 30.0%
CTTTGTGTTCTTAAGTTAAC+AGG + tig0021939:53434-53453 Msa1395290:CDS 30.0%
TGAGAGAAAATATAAGAGGA+TGG - tig0021939:53476-53495 None:intergenic 30.0%
GATCAAAACCACATTTAACA+AGG - tig0021939:53529-53548 None:intergenic 30.0%
!!! TGTGGTTTTGATCATTTAGT+TGG + tig0021939:53536-53555 Msa1395290:CDS 30.0%
TAAAATGAGGAATTGGATCA+AGG + tig0021939:53646-53665 Msa1395290:CDS 30.0%
! TTAGAAGACTTCCTTTTTGA+AGG - tig0021939:53791-53810 None:intergenic 30.0%
!!! CACTCTGTTGACTTTTTTTT+TGG - tig0021939:53853-53872 None:intergenic 30.0%
CAAAAAAAAAGTCAACAGAG+TGG + tig0021939:53851-53870 Msa1395290:CDS 30.0%
!!! CAAATTAGTTTTGGGATGAA+TGG + tig0021939:54137-54156 Msa1395290:CDS 30.0%
! GGTATTGAATTTGGATTGAA+GGG - tig0021939:54188-54207 None:intergenic 30.0%
!! AGGTATTGAATTTGGATTGA+AGG - tig0021939:54189-54208 None:intergenic 30.0%
!! TCACTCATAGGTATTGAATT+TGG - tig0021939:54197-54216 None:intergenic 30.0%
TATTCTCAAGTCATGAATCA+TGG + tig0021939:54318-54337 Msa1395290:three_prime_UTR 30.0%
TTCCTATTTCGAATTGTTAC+AGG + tig0021939:54344-54363 Msa1395290:three_prime_UTR 30.0%
TACCTGTAACAATTCGAAAT+AGG - tig0021939:54349-54368 None:intergenic 30.0%
!! TGTCAGTTTGTTCTTTTTGT+AGG + tig0021939:54433-54452 Msa1395290:three_prime_UTR 30.0%
TGATGAAGAGGAAATCAAAG+AGG + tig0021939:51755-51774 Msa1395290:CDS 35.0%
GATGAAGAGGAAATCAAAGA+GGG + tig0021939:51756-51775 Msa1395290:CDS 35.0%
AAGAGTTATGCCCAATCTAT+GGG + tig0021939:51885-51904 Msa1395290:CDS 35.0%
AACTCCAAAACCCATAGATT+GGG - tig0021939:51898-51917 None:intergenic 35.0%
TAACTCCAAAACCCATAGAT+TGG - tig0021939:51899-51918 None:intergenic 35.0%
TGGATCAAAGTATGTGAGTA+AGG + tig0021939:51980-51999 Msa1395290:CDS 35.0%
! ATGCACTGGGTTTTTGTTAA+AGG - tig0021939:52029-52048 None:intergenic 35.0%
TTTAACAAAAACCCAGTGCA+TGG + tig0021939:52028-52047 Msa1395290:CDS 35.0%
TAAAATAGCGTGCTTTGTCA+GGG - tig0021939:52133-52152 None:intergenic 35.0%
! TTTTGGATCCTCGTTTGAAA+AGG + tig0021939:52165-52184 Msa1395290:CDS 35.0%
TTAGAACTCAATGATCAAGC+TGG + tig0021939:52191-52210 Msa1395290:CDS 35.0%
TCAATGGTTGTTGAAGCAAA+TGG + tig0021939:52239-52258 Msa1395290:CDS 35.0%
!!! GTCGCTTACGAAATGTTTTT+TGG + tig0021939:52426-52445 Msa1395290:intron 35.0%
! AGGGCTGCATATGAATATTT+TGG + tig0021939:52464-52483 Msa1395290:intron 35.0%
ATGGTTTACTCCAACAAATG+GGG - tig0021939:52546-52565 None:intergenic 35.0%
GATGGTTTACTCCAACAAAT+GGG - tig0021939:52547-52566 None:intergenic 35.0%
TGATGGTTTACTCCAACAAA+TGG - tig0021939:52548-52567 None:intergenic 35.0%
TTTGTTGGAGTAAACCATCA+TGG + tig0021939:52548-52567 Msa1395290:intron 35.0%
AGGATACTAAGTCCTTTACT+TGG + tig0021939:52609-52628 Msa1395290:intron 35.0%
TGATCGGTAATTATGGCATT+TGG - tig0021939:52674-52693 None:intergenic 35.0%
TCTGTCTTGATCGGTAATTA+TGG - tig0021939:52681-52700 None:intergenic 35.0%
TTTCATGGATCTGTCTTGAT+CGG - tig0021939:52690-52709 None:intergenic 35.0%
!! GAGTATCTACTTAGCTTTTC+TGG - tig0021939:52782-52801 None:intergenic 35.0%
AGAGTGATTTCATGGAAAAG+TGG + tig0021939:52858-52877 Msa1395290:intron 35.0%
GAGTGATTTCATGGAAAAGT+GGG + tig0021939:52859-52878 Msa1395290:intron 35.0%
! CATATGAAAGAGACACGTTT+TGG + tig0021939:52963-52982 Msa1395290:intron 35.0%
!! AAGGAAAACAAGGCTGATTT+TGG + tig0021939:53113-53132 Msa1395290:CDS 35.0%
!! TCATACTTGCTTTGAGAGAT+TGG + tig0021939:53256-53275 Msa1395290:CDS 35.0%
CCACTGAGAGAAAATATAAG+AGG - tig0021939:53480-53499 None:intergenic 35.0%
! CCTCTTATATTTTCTCTCAG+TGG + tig0021939:53477-53496 Msa1395290:CDS 35.0%
! CTTATATTTTCTCTCAGTGG+AGG + tig0021939:53480-53499 Msa1395290:CDS 35.0%
AGACATACCCTTGTTAAATG+TGG + tig0021939:53518-53537 Msa1395290:CDS 35.0%
! CTTTTATGAAGTTGCTTCTG+AGG + tig0021939:53598-53617 Msa1395290:CDS 35.0%
GTTCAAGTAGTTGATCTAGT+TGG + tig0021939:53988-54007 Msa1395290:CDS 35.0%
!! TAGGGGGAACAAATTAGTTT+TGG + tig0021939:54128-54147 Msa1395290:intron 35.0%
!!! AGGGGGAACAAATTAGTTTT+GGG + tig0021939:54129-54148 Msa1395290:intron 35.0%
ACCTATGAGTGAAGTAAATC+AGG + tig0021939:54205-54224 Msa1395290:CDS 35.0%
ACCTGATTTACTTCACTCAT+AGG - tig0021939:54209-54228 None:intergenic 35.0%
CAAGAGTTATGCCCAATCTA+TGG + tig0021939:51884-51903 Msa1395290:CDS 40.0%
! TATGCCCAATCTATGGGTTT+TGG + tig0021939:51891-51910 Msa1395290:CDS 40.0%
TTTACTCTAGCATGTAGTCG+TGG + tig0021939:51960-51979 Msa1395290:CDS 40.0%
ATTCAATCTAGCCATGCACT+GGG - tig0021939:52042-52061 None:intergenic 40.0%
CTAAAATAGCGTGCTTTGTC+AGG - tig0021939:52134-52153 None:intergenic 40.0%
! TCTAACCTCCTTTTCAAACG+AGG - tig0021939:52176-52195 None:intergenic 40.0%
! AGCCGCAATTGCATTTTTCA+TGG - tig0021939:52705-52724 None:intergenic 40.0%
AACGTGTCTCTTTCATATGC+AGG - tig0021939:52962-52981 None:intergenic 40.0%
! TTGCATTGGTGAATGCTTTC+TGG - tig0021939:53193-53212 None:intergenic 40.0%
!! ACTTGCTTTGAGAGATTGGA+AGG + tig0021939:53260-53279 Msa1395290:CDS 40.0%
CTCAAAGTCTTTCTCGTTGA+AGG - tig0021939:53360-53379 None:intergenic 40.0%
! TATTTTCTCTCAGTGGAGGA+AGG + tig0021939:53484-53503 Msa1395290:CDS 40.0%
CTTTACTTCGAGTCGGTATA+GGG - tig0021939:53760-53779 None:intergenic 40.0%
!! CTATACCGACTCGAAGTAAA+GGG + tig0021939:53759-53778 Msa1395290:CDS 40.0%
!! GAAGACTTCCTTTTTGAAGG+AGG - tig0021939:53788-53807 None:intergenic 40.0%
ACAGAGTGGAAATCAACAAG+AGG + tig0021939:53865-53884 Msa1395290:CDS 40.0%
CTTGTACTTTAGATGCACAC+AGG - tig0021939:53963-53982 None:intergenic 40.0%
!!! AGTTTTGGGATGAATGGACA+TGG + tig0021939:54143-54162 Msa1395290:CDS 40.0%
CATTCAATCTAGCCATGCAC+TGG - tig0021939:52043-52062 None:intergenic 45.0%
TGGATCCTCGTTTGAAAAGG+AGG + tig0021939:52168-52187 Msa1395290:CDS 45.0%
AAAGTGAGGAGACTACGACT+TGG + tig0021939:52311-52330 Msa1395290:CDS 45.0%
AAGTGAGGAGACTACGACTT+GGG + tig0021939:52312-52331 Msa1395290:CDS 45.0%
! ATGCCTTTTGCCCCATTTGT+TGG + tig0021939:52533-52552 Msa1395290:intron 45.0%
ACTCCAACAAATGGGGCAAA+AGG - tig0021939:52539-52558 None:intergenic 45.0%
! ACAACACAGATTGGCCATGA+TGG - tig0021939:52565-52584 None:intergenic 45.0%
TCATGGCCAATCTGTGTTGT+TGG + tig0021939:52565-52584 Msa1395290:intron 45.0%
! CATGGCCAATCTGTGTTGTT+GGG + tig0021939:52566-52585 Msa1395290:intron 45.0%
! CTGTGCTTTATTGTCGAAGG+AGG + tig0021939:52589-52608 Msa1395290:intron 45.0%
GCATGCACTCTAACCATGTT+TGG - tig0021939:52640-52659 None:intergenic 45.0%
ACATGGTTAGAGTGCATGCA+TGG + tig0021939:52641-52660 Msa1395290:intron 45.0%
! ACCATCGATGACGAGCTTTT+GGG - tig0021939:52733-52752 None:intergenic 45.0%
!! TGAAAGAGACACGTTTTGGG+CGG + tig0021939:52967-52986 Msa1395290:intron 45.0%
AACCATCTTCCACAATGCCA+GGG - tig0021939:53706-53725 None:intergenic 45.0%
CCTTTACTTCGAGTCGGTAT+AGG - tig0021939:53761-53780 None:intergenic 45.0%
!! CCTATACCGACTCGAAGTAA+AGG + tig0021939:53758-53777 Msa1395290:CDS 45.0%
!! AAGGGCATCCTCCTTCAAAA+AGG + tig0021939:53777-53796 Msa1395290:CDS 45.0%
! TTTGGGATGAATGGACATGG+TGG + tig0021939:54146-54165 Msa1395290:CDS 45.0%
AGTGAGGAGACTACGACTTG+GGG + tig0021939:52313-52332 Msa1395290:CDS 50.0%
TTTGGGCAGATGCGAGATGT+AGG + tig0021939:52444-52463 Msa1395290:intron 50.0%
TTGGGCAGATGCGAGATGTA+GGG + tig0021939:52445-52464 Msa1395290:intron 50.0%
CACAGCCCAACAACACAGAT+TGG - tig0021939:52574-52593 None:intergenic 50.0%
! GGGCTGTGCTTTATTGTCGA+AGG + tig0021939:52586-52605 Msa1395290:intron 50.0%
TCCCAAAAGCTCGTCATCGA+TGG + tig0021939:52729-52748 Msa1395290:intron 50.0%
! CACCATCGATGACGAGCTTT+TGG - tig0021939:52734-52753 None:intergenic 50.0%
CTCGTCATCGATGGTGTTTG+TGG + tig0021939:52738-52757 Msa1395290:intron 50.0%
!! GAAAGAGACACGTTTTGGGC+GGG + tig0021939:52968-52987 Msa1395290:intron 50.0%
!! ACCTCTAAAGAAGCATCCCC+TGG + tig0021939:53686-53705 Msa1395290:CDS 50.0%
ACCATCTTCCACAATGCCAG+GGG - tig0021939:53705-53724 None:intergenic 50.0%
GAACCATCTTCCACAATGCC+AGG - tig0021939:53707-53726 None:intergenic 50.0%
GGATGCCCTTTACTTCGAGT+CGG - tig0021939:53767-53786 None:intergenic 50.0%
GCCAGGGGATGCTTCTTTAG+AGG - tig0021939:53690-53709 None:intergenic 55.0%
!! AGAAGCATCCCCTGGCATTG+TGG + tig0021939:53694-53713 Msa1395290:CDS 55.0%
TCCCCTGGCATTGTGGAAGA+TGG + tig0021939:53701-53720 Msa1395290:CDS 55.0%
! AGGAGACTACGACTTGGGGC+TGG + tig0021939:52317-52336 Msa1395290:CDS 60.0%
ACTTGGGGCTGGAGATGCTG+AGG + tig0021939:52328-52347 Msa1395290:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0021939 gene 51735 54478 51735 ID=Msa1395290;Name=Msa1395290
tig0021939 mRNA 51735 54478 51735 ID=Msa1395290-mRNA-1;Parent=Msa1395290;Name=Msa1395290-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.66|0.5|1|1|0.75|4|240|559
tig0021939 exon 51735 52403 51735 ID=Msa1395290-mRNA-1:exon:14837;Parent=Msa1395290-mRNA-1
tig0021939 exon 53056 53886 53056 ID=Msa1395290-mRNA-1:exon:14838;Parent=Msa1395290-mRNA-1
tig0021939 exon 53958 54029 53958 ID=Msa1395290-mRNA-1:exon:14839;Parent=Msa1395290-mRNA-1
tig0021939 exon 54131 54478 54131 ID=Msa1395290-mRNA-1:exon:14840;Parent=Msa1395290-mRNA-1
tig0021939 CDS 51735 52403 51735 ID=Msa1395290-mRNA-1:cds;Parent=Msa1395290-mRNA-1
tig0021939 CDS 53056 53886 53056 ID=Msa1395290-mRNA-1:cds;Parent=Msa1395290-mRNA-1
tig0021939 CDS 53958 54029 53958 ID=Msa1395290-mRNA-1:cds;Parent=Msa1395290-mRNA-1
tig0021939 CDS 54131 54238 54131 ID=Msa1395290-mRNA-1:cds;Parent=Msa1395290-mRNA-1
tig0021939 three_prime_UTR 54239 54478 54239 ID=Msa1395290-mRNA-1:three_prime_utr;Parent=Msa1395290-mRNA-1
Gene Sequence

>Msa1395290

GAAGAAGTATTTGTATCTTCTGATGAAGAGGAAATCAAAGAGGGAAATAATAGTTTTGATGATAGTTTAGAAGAAGATATTGTTCATGAAGATGAAAAACCTAAAGTTGGAACTATATTTAGCTCTAAAGATGAACTTTTTGAGTATTACAAGAGTTATGCCCAATCTATGGGTTTTGGAGTTACTAAACTTAGTAACAAAAATACAGATGATGGGAAAAAATACTTTACTCTAGCATGTAGTCGTGGATCAAAGTATGTGAGTAAGGTGAAGAAGCTTTTGAACCCAAATCCTTTAACAAAAACCCAGTGCATGGCTAGATTGAATGCATGTATTTCTTTAGATGGAACAGTTACTATTACAAAACTTTTTCTTGAGCATAATCATGATCTAATCCCTGACAAAGCACGCTATTTTAGAAGTAGTAAGTTTTTGGATCCTCGTTTGAAAAGGAGGTTAGAACTCAATGATCAAGCTGGAATAAATGTAAGCATAAATTTTCGATCAATGGTTGTTGAAGCAAATGGTTATGAGAATATGACATTTGGTGAAAAGGATTGTAGAAACTATATAGATAAAGTGAGGAGACTACGACTTGGGGCTGGAGATGCTGAGGCTATTCAAAATTATTTCGTTAAAATGCAAAAGCAAAATAGTCAGTTCTATTATACAACATTGAAGCAATTTGTTGAACAATATGACAATGCATTGAGAGATAAAGTTGAAAAGGAAAACAAGGCTGATTTTGGTTCATTTAATACAGTGATAGCTTGTATAAGTCATTTTGGCTTTGAGTTGCAATTCCAGAAAGCATTCACCAATGCAAAATTCAAAGAATTTCAAGTGGAGGTTGCTTCTATGATTTACTGTCATACTTGCTTTGAGAGATTGGAAGGATCAAATTCTATATATTCTGTTATAGAGAGCAAGAAAAACTTTGACATAATTAAAGATATAGTGTTTGAGGTATCCTTCAACGAGAAAGACTTTGAGTTACATTGTATGTGTTGTTTGTTTCAATTCAAAGGTATTTTATGTAGGCACATCCTTTGTGTTCTTAAGTTAACAGGAAAAACAGAGTCATTGCCATCCTCTTATATTTTCTCTCAGTGGAGGAAGGATATAAGACGAAGACATACCCTTGTTAAATGTGGTTTTGATCATTTAGTTGGAAATGCTAAATTGCAAAGAGTTGATAAAGCGTGTGCTGACTTTTATGAAGTTGCTTCTGAGGTGATTAATACCGATGATGATTTGTTTAAAATGAGGAATTGGATCAAGGAAGTAAAAAATGAGTTTACCTCTAAAGAAGCATCCCCTGGCATTGTGGAAGATGGTTCAATTCAAAATCAAGTGATTAAAATTCTTGACCCTATACCGACTCGAAGTAAAGGGCATCCTCCTTCAAAAAGGAAGTCTTCTAAAGTTGATCAAATTGTGAAGAAAATTTCAAAAAAGAAGACCCAAAAAAAAAGTCAACAGAGTGGAAATCAACAAGAGGGCCTGTGTGCATCTAAAGTACAAGAGAGTGTTCAAGTAGTTGATCTAGTTGGCACACAAGAGAGTGTTCAAGGGGAACAAATTAGTTTTGGGATGAATGGACATGGTGGTGTAAATAATTTAGCTCCCTTCAATCCAAATTCAATACCTATGAGTGAAGTAAATCAGGTGCAAGCATAA

Protein sequence

>Msa1395290

EEVFVSSDEEEIKEGNNSFDDSLEEDIVHEDEKPKVGTIFSSKDELFEYYKSYAQSMGFGVTKLSNKNTDDGKKYFTLACSRGSKYVSKVKKLLNPNPLTKTQCMARLNACISLDGTVTITKLFLEHNHDLIPDKARYFRSSKFLDPRLKRRLELNDQAGINVSINFRSMVVEANGYENMTFGEKDCRNYIDKVRRLRLGAGDAEAIQNYFVKMQKQNSQFYYTTLKQFVEQYDNALRDKVEKENKADFGSFNTVIACISHFGFELQFQKAFTNAKFKEFQVEVASMIYCHTCFERLEGSNSIYSVIESKKNFDIIKDIVFEVSFNEKDFELHCMCCLFQFKGILCRHILCVLKLTGKTESLPSSYIFSQWRKDIRRRHTLVKCGFDHLVGNAKLQRVDKACADFYEVASEVINTDDDLFKMRNWIKEVKNEFTSKEASPGIVEDGSIQNQVIKILDPIPTRSKGHPPSKRKSSKVDQIVKKISKKKTQKKSQQSGNQQEGLCASKVQESVQVVDLVGTQESVQGEQISFGMNGHGGVNNLAPFNPNSIPMSEVNQVQA*