Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395290 | GAU40839.1 | 62.139 | 346 | 105 | 5 | 224 | 557 | 469 | 800 | 6.73e-135 | 422 |
| Msa1395290 | GAU40839.1 | 65.022 | 223 | 76 | 1 | 1 | 223 | 31 | 251 | 4.38e-92 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395290 | sp|Q9SWG3|FAR1_ARATH | 27.381 | 336 | 205 | 10 | 225 | 543 | 465 | 778 | 1.86e-22 | 105 |
| Msa1395290 | sp|Q9SWG3|FAR1_ARATH | 26.749 | 243 | 149 | 9 | 31 | 257 | 48 | 277 | 6.56e-15 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395290 | A0A2Z6P9Q3 | 62.139 | 346 | 105 | 5 | 224 | 557 | 469 | 800 | 3.22e-135 | 422 |
| Msa1395290 | A0A2Z6P9Q3 | 65.022 | 223 | 76 | 1 | 1 | 223 | 31 | 251 | 2.09e-92 | 310 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1395290 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395290 | MtrunA17_Chr6g0477261 | 59.718 | 355 | 120 | 5 | 224 | 556 | 293 | 646 | 3.45e-134 | 405 |
| Msa1395290 | MtrunA17_Chr6g0477261 | 86.842 | 76 | 10 | 0 | 149 | 224 | 1 | 76 | 4.86e-36 | 142 |
| Msa1395290 | MtrunA17_Chr2g0296781 | 64.537 | 313 | 98 | 4 | 224 | 524 | 404 | 715 | 1.49e-125 | 385 |
| Msa1395290 | MtrunA17_Chr2g0296781 | 74.054 | 185 | 48 | 0 | 40 | 224 | 3 | 187 | 1.85e-90 | 293 |
| Msa1395290 | MtrunA17_Chr1g0196541 | 60.751 | 293 | 103 | 5 | 224 | 510 | 404 | 690 | 5.29e-103 | 326 |
| Msa1395290 | MtrunA17_Chr1g0196541 | 56.284 | 183 | 80 | 0 | 40 | 222 | 3 | 185 | 3.58e-61 | 214 |
| Msa1395290 | MtrunA17_Chr6g0476441 | 50.352 | 284 | 98 | 5 | 316 | 557 | 1 | 283 | 2.38e-75 | 241 |
| Msa1395290 | MtrunA17_Chr5g0441581 | 36.260 | 262 | 155 | 6 | 224 | 478 | 432 | 688 | 6.39e-39 | 151 |
| Msa1395290 | MtrunA17_Chr5g0441581 | 35.238 | 210 | 120 | 5 | 20 | 223 | 15 | 214 | 1.03e-26 | 114 |
| Msa1395290 | MtrunA17_Chr6g0476431 | 61.628 | 86 | 33 | 0 | 40 | 125 | 3 | 88 | 1.76e-31 | 117 |
| Msa1395290 | MtrunA17_Chr3g0080351 | 30.693 | 202 | 125 | 5 | 201 | 402 | 460 | 646 | 1.92e-21 | 99.0 |
| Msa1395290 | MtrunA17_Chr2g0291581 | 36.313 | 179 | 100 | 6 | 204 | 377 | 453 | 622 | 3.46e-21 | 97.8 |
| Msa1395290 | MtrunA17_Chr2g0291581 | 28.125 | 224 | 147 | 6 | 34 | 256 | 71 | 281 | 3.24e-13 | 72.4 |
| Msa1395290 | MtrunA17_Chr1g0207551 | 38.961 | 154 | 87 | 2 | 225 | 378 | 445 | 591 | 4.94e-21 | 97.4 |
| Msa1395290 | MtrunA17_Chr1g0207551 | 25.316 | 237 | 157 | 5 | 31 | 257 | 31 | 257 | 9.31e-13 | 71.2 |
| Msa1395290 | MtrunA17_Chr6g0451441 | 32.000 | 200 | 126 | 5 | 2 | 195 | 52 | 247 | 3.22e-20 | 93.6 |
| Msa1395290 | MtrunA17_Chr5g0440451 | 31.579 | 190 | 122 | 5 | 223 | 411 | 457 | 639 | 4.61e-19 | 91.3 |
| Msa1395290 | MtrunA17_Chr2g0329031 | 28.340 | 247 | 144 | 7 | 40 | 278 | 20 | 241 | 1.50e-18 | 89.7 |
| Msa1395290 | MtrunA17_Chr2g0329031 | 31.646 | 158 | 100 | 3 | 224 | 381 | 417 | 566 | 7.29e-17 | 84.3 |
| Msa1395290 | MtrunA17_Chr7g0258861 | 25.692 | 253 | 166 | 7 | 31 | 268 | 7 | 252 | 2.42e-16 | 80.1 |
| Msa1395290 | MtrunA17_Chr2g0291591 | 26.407 | 231 | 156 | 7 | 33 | 257 | 63 | 285 | 7.32e-16 | 80.9 |
| Msa1395290 | MtrunA17_Chr3g0118611 | 31.034 | 174 | 107 | 5 | 225 | 397 | 356 | 517 | 2.18e-15 | 79.7 |
| Msa1395290 | MtrunA17_Chr1g0172041 | 31.818 | 110 | 74 | 1 | 290 | 399 | 3 | 111 | 5.50e-15 | 71.2 |
| Msa1395290 | MtrunA17_Chr5g0448761 | 30.065 | 153 | 101 | 2 | 224 | 376 | 479 | 625 | 9.94e-15 | 77.4 |
| Msa1395290 | MtrunA17_Chr5g0448761 | 26.961 | 204 | 137 | 7 | 31 | 224 | 57 | 258 | 1.93e-11 | 67.0 |
| Msa1395290 | MtrunA17_Chr8g0363841 | 27.941 | 204 | 139 | 4 | 30 | 225 | 10 | 213 | 6.24e-14 | 74.7 |
| Msa1395290 | MtrunA17_Chr2g0324011 | 24.514 | 257 | 179 | 7 | 31 | 276 | 7 | 259 | 2.65e-13 | 72.8 |
| Msa1395290 | MtrunA17_Chr5g0448511 | 32.215 | 149 | 93 | 4 | 224 | 371 | 251 | 392 | 1.27e-12 | 70.5 |
| Msa1395290 | MtrunA17_Chr3g0077731 | 45.370 | 108 | 46 | 4 | 429 | 524 | 1 | 107 | 2.89e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1395290 | AT4G15090.1 | 27.381 | 336 | 205 | 10 | 225 | 543 | 465 | 778 | 1.89e-23 | 105 |
| Msa1395290 | AT4G15090.1 | 26.749 | 243 | 149 | 9 | 31 | 257 | 48 | 277 | 6.67e-16 | 81.6 |
| Msa1395290 | AT4G15090.5 | 27.381 | 336 | 205 | 10 | 225 | 543 | 465 | 778 | 1.89e-23 | 105 |
| Msa1395290 | AT4G15090.5 | 26.749 | 243 | 149 | 9 | 31 | 257 | 48 | 277 | 6.67e-16 | 81.6 |
| Msa1395290 | AT4G15090.3 | 27.381 | 336 | 205 | 10 | 225 | 543 | 465 | 778 | 1.89e-23 | 105 |
| Msa1395290 | AT4G15090.3 | 26.749 | 243 | 149 | 9 | 31 | 257 | 48 | 277 | 6.67e-16 | 81.6 |
| Msa1395290 | AT4G15090.2 | 27.381 | 336 | 205 | 10 | 225 | 543 | 465 | 778 | 1.89e-23 | 105 |
| Msa1395290 | AT4G15090.2 | 26.749 | 243 | 149 | 9 | 31 | 257 | 48 | 277 | 6.67e-16 | 81.6 |
| Msa1395290 | AT4G15090.4 | 27.381 | 336 | 205 | 10 | 225 | 543 | 465 | 778 | 1.89e-23 | 105 |
| Msa1395290 | AT4G15090.4 | 26.749 | 243 | 149 | 9 | 31 | 257 | 48 | 277 | 6.67e-16 | 81.6 |
| Msa1395290 | AT3G22170.2 | 36.723 | 177 | 98 | 4 | 204 | 379 | 458 | 621 | 2.20e-23 | 105 |
| Msa1395290 | AT3G22170.1 | 36.723 | 177 | 98 | 4 | 204 | 379 | 458 | 621 | 2.20e-23 | 105 |
| Msa1395290 | AT1G76320.1 | 31.602 | 231 | 126 | 9 | 40 | 257 | 3 | 214 | 2.31e-21 | 99.0 |
| Msa1395290 | AT1G76320.1 | 33.750 | 160 | 97 | 4 | 224 | 383 | 401 | 551 | 2.15e-19 | 92.8 |
| Msa1395290 | AT1G76320.4 | 31.602 | 231 | 126 | 9 | 40 | 257 | 3 | 214 | 2.31e-21 | 99.0 |
| Msa1395290 | AT1G76320.4 | 33.750 | 160 | 97 | 4 | 224 | 383 | 401 | 551 | 2.15e-19 | 92.8 |
| Msa1395290 | AT1G76320.2 | 31.602 | 231 | 126 | 9 | 40 | 257 | 3 | 214 | 2.45e-21 | 98.6 |
| Msa1395290 | AT1G76320.2 | 33.750 | 160 | 97 | 4 | 224 | 383 | 401 | 551 | 2.18e-19 | 92.8 |
| Msa1395290 | AT1G76320.3 | 31.602 | 231 | 126 | 9 | 40 | 257 | 3 | 214 | 2.82e-21 | 98.6 |
| Msa1395290 | AT1G76320.3 | 33.750 | 160 | 97 | 4 | 224 | 383 | 401 | 551 | 3.51e-19 | 92.0 |
| Msa1395290 | AT1G52520.1 | 33.962 | 212 | 121 | 7 | 224 | 418 | 484 | 693 | 9.51e-21 | 96.7 |
| Msa1395290 | AT4G19990.3 | 33.333 | 183 | 107 | 5 | 224 | 402 | 412 | 583 | 1.61e-15 | 80.5 |
| Msa1395290 | AT4G19990.4 | 33.333 | 183 | 107 | 5 | 224 | 402 | 412 | 583 | 1.61e-15 | 80.5 |
| Msa1395290 | AT4G19990.5 | 33.333 | 183 | 107 | 5 | 224 | 402 | 412 | 583 | 1.66e-15 | 80.5 |
| Msa1395290 | AT4G19990.1 | 33.333 | 183 | 107 | 5 | 224 | 402 | 355 | 526 | 1.80e-15 | 80.1 |
| Msa1395290 | AT4G19990.6 | 33.333 | 183 | 107 | 5 | 224 | 402 | 412 | 583 | 1.80e-15 | 80.1 |
| Msa1395290 | AT4G19990.2 | 33.333 | 183 | 107 | 5 | 224 | 402 | 412 | 583 | 1.80e-15 | 80.1 |
| Msa1395290 | AT4G19990.7 | 33.333 | 183 | 107 | 5 | 224 | 402 | 426 | 597 | 2.21e-15 | 80.1 |
| Msa1395290 | AT1G80010.1 | 30.769 | 156 | 103 | 4 | 224 | 377 | 510 | 662 | 1.60e-14 | 77.0 |
| Msa1395290 | AT2G32250.2 | 30.921 | 152 | 94 | 3 | 224 | 373 | 408 | 550 | 2.41e-14 | 76.6 |
| Msa1395290 | AT2G32250.4 | 30.921 | 152 | 94 | 3 | 224 | 373 | 408 | 550 | 2.41e-14 | 76.6 |
| Msa1395290 | AT2G32250.5 | 30.921 | 152 | 94 | 3 | 224 | 373 | 408 | 550 | 2.43e-14 | 76.6 |
| Msa1395290 | AT2G32250.6 | 30.921 | 152 | 94 | 3 | 224 | 373 | 408 | 550 | 2.58e-14 | 76.6 |
| Msa1395290 | AT2G32250.1 | 30.921 | 152 | 94 | 3 | 224 | 373 | 408 | 550 | 2.58e-14 | 76.6 |
| Msa1395290 | AT2G32250.3 | 30.921 | 152 | 94 | 3 | 224 | 373 | 408 | 550 | 2.58e-14 | 76.6 |
| Msa1395290 | AT2G32250.7 | 30.921 | 152 | 94 | 3 | 224 | 373 | 367 | 509 | 2.68e-14 | 76.6 |
| Msa1395290 | AT2G32250.8 | 30.921 | 152 | 94 | 3 | 224 | 373 | 367 | 509 | 2.87e-14 | 76.6 |
| Msa1395290 | AT4G38180.1 | 29.936 | 157 | 96 | 3 | 224 | 376 | 488 | 634 | 2.03e-13 | 73.9 |
| Msa1395290 | AT4G38180.1 | 24.664 | 223 | 157 | 6 | 12 | 225 | 51 | 271 | 4.85e-11 | 66.2 |
| Msa1395290 | AT4G38170.1 | 29.936 | 157 | 104 | 3 | 224 | 380 | 253 | 403 | 2.49e-13 | 73.2 |
| Msa1395290 | AT2G27110.2 | 30.968 | 155 | 97 | 6 | 224 | 376 | 433 | 579 | 7.96e-12 | 68.6 |
| Msa1395290 | AT2G27110.1 | 30.968 | 155 | 97 | 6 | 224 | 376 | 433 | 579 | 7.96e-12 | 68.6 |
Find 79 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATTGGTGAATGCTTTC+TGG | 0.174694 | tig0021939:-53190 | None:intergenic |
| TCACTCATAGGTATTGAATT+TGG | 0.197997 | tig0021939:-54194 | None:intergenic |
| AAGGAAAACAAGGCTGATTT+TGG | 0.221363 | tig0021939:+53113 | Msa1395290:CDS |
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | tig0021939:+51884 | Msa1395290:CDS |
| ATAGCTTGTATAAGTCATTT+TGG | 0.245260 | tig0021939:+53152 | Msa1395290:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | tig0021939:+52059 | Msa1395290:CDS |
| CTAAATATAGTTCCAACTTT+AGG | 0.250578 | tig0021939:-51834 | None:intergenic |
| ATCCACAATATTAATGTTAC+AGG | 0.261830 | tig0021939:-54259 | None:intergenic |
| CTTTGTGTTCTTAAGTTAAC+AGG | 0.271995 | tig0021939:+53434 | Msa1395290:CDS |
| CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | tig0021939:-52131 | None:intergenic |
| TTCCTATTTCGAATTGTTAC+AGG | 0.287780 | tig0021939:+54344 | Msa1395290:three_prime_UTR |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | tig0021939:+51891 | Msa1395290:CDS |
| CCTTTACTTCGAGTCGGTAT+AGG | 0.330477 | tig0021939:-53758 | None:intergenic |
| ATTTGTTTAAAATGAGGAAT+TGG | 0.340063 | tig0021939:+53639 | Msa1395290:CDS |
| CTCAAAGTCTTTCTCGTTGA+AGG | 0.350216 | tig0021939:-53357 | None:intergenic |
| TCATACTTGCTTTGAGAGAT+TGG | 0.350261 | tig0021939:+53256 | Msa1395290:CDS |
| GCCAGGGGATGCTTCTTTAG+AGG | 0.353219 | tig0021939:-53687 | None:intergenic |
| TACCTGTAACAATTCGAAAT+AGG | 0.377069 | tig0021939:-54346 | None:intergenic |
| TTCATGACTTGAGAATAAAA+TGG | 0.385023 | tig0021939:-54312 | None:intergenic |
| AAGGGCATCCTCCTTCAAAA+AGG | 0.389803 | tig0021939:+53777 | Msa1395290:CDS |
| CTTTACTTCGAGTCGGTATA+GGG | 0.390578 | tig0021939:-53757 | None:intergenic |
| ACCTATGAGTGAAGTAAATC+AGG | 0.391661 | tig0021939:+54205 | Msa1395290:CDS |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | tig0021939:-51896 | None:intergenic |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | tig0021939:+52312 | Msa1395290:CDS |
| GAATATGACATTTGGTGAAA+AGG | 0.417591 | tig0021939:+52268 | Msa1395290:CDS |
| ACCTGATTTACTTCACTCAT+AGG | 0.422951 | tig0021939:-54206 | None:intergenic |
| AATTAAAGATATAGTGTTTG+AGG | 0.424835 | tig0021939:+53331 | Msa1395290:CDS |
| TATTCTCAAGTCATGAATCA+TGG | 0.442758 | tig0021939:+54318 | Msa1395290:three_prime_UTR |
| AGGTATTGAATTTGGATTGA+AGG | 0.452798 | tig0021939:-54186 | None:intergenic |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | tig0021939:-51895 | None:intergenic |
| ATGATGATTTGTTTAAAATG+AGG | 0.460118 | tig0021939:+53633 | Msa1395290:CDS |
| TAAAATGAGGAATTGGATCA+AGG | 0.463705 | tig0021939:+53646 | Msa1395290:CDS |
| GAACCATCTTCCACAATGCC+AGG | 0.467359 | tig0021939:-53704 | None:intergenic |
| ATTGAGAGATAAAGTTGAAA+AGG | 0.468812 | tig0021939:+53094 | Msa1395290:CDS |
| TGTTGTTTGTTTCAATTCAA+AGG | 0.475247 | tig0021939:+53392 | Msa1395290:CDS |
| TTCCTGTAACATTAATATTG+TGG | 0.477639 | tig0021939:+54257 | Msa1395290:three_prime_UTR |
| CCACTGAGAGAAAATATAAG+AGG | 0.477796 | tig0021939:-53477 | None:intergenic |
| GTTCAAGTAGTTGATCTAGT+TGG | 0.480957 | tig0021939:+53988 | Msa1395290:CDS |
| GGTTATGAGAATATGACATT+TGG | 0.482364 | tig0021939:+52260 | Msa1395290:CDS |
| CTATACCGACTCGAAGTAAA+GGG | 0.485276 | tig0021939:+53759 | Msa1395290:CDS |
| GGTATTGAATTTGGATTGAA+GGG | 0.485774 | tig0021939:-54185 | None:intergenic |
| CATTCAATCTAGCCATGCAC+TGG | 0.485895 | tig0021939:-52040 | None:intergenic |
| CCTATACCGACTCGAAGTAA+AGG | 0.491678 | tig0021939:+53758 | Msa1395290:CDS |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.495114 | tig0021939:+52239 | Msa1395290:CDS |
| TGGATCAAAGTATGTGAGTA+AGG | 0.495408 | tig0021939:+51980 | Msa1395290:CDS |
| TCCCCTGGCATTGTGGAAGA+TGG | 0.500694 | tig0021939:+53701 | Msa1395290:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | tig0021939:+51885 | Msa1395290:CDS |
| ACCTCTAAAGAAGCATCCCC+TGG | 0.505424 | tig0021939:+53686 | Msa1395290:CDS |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | tig0021939:+52317 | Msa1395290:CDS |
| ACTTGCTTTGAGAGATTGGA+AGG | 0.519549 | tig0021939:+53260 | Msa1395290:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.520293 | tig0021939:+51743 | Msa1395290:CDS |
| TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | tig0021939:+52168 | Msa1395290:CDS |
| ATTCAAAGAATTTCAAGTGG+AGG | 0.539575 | tig0021939:+53214 | Msa1395290:CDS |
| TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | tig0021939:-52130 | None:intergenic |
| TTAGAACTCAATGATCAAGC+TGG | 0.567016 | tig0021939:+52191 | Msa1395290:CDS |
| GAAACTATATAGATAAAGTG+AGG | 0.579861 | tig0021939:+52297 | Msa1395290:CDS |
| TGAGAGAAAATATAAGAGGA+TGG | 0.581159 | tig0021939:-53473 | None:intergenic |
| AGACATACCCTTGTTAAATG+TGG | 0.581997 | tig0021939:+53518 | Msa1395290:CDS |
| AACCATCTTCCACAATGCCA+GGG | 0.582504 | tig0021939:-53703 | None:intergenic |
| AGAAGCATCCCCTGGCATTG+TGG | 0.590947 | tig0021939:+53694 | Msa1395290:CDS |
| ATTCAATCTAGCCATGCACT+GGG | 0.603564 | tig0021939:-52039 | None:intergenic |
| GATGAAGAGGAAATCAAAGA+GGG | 0.610064 | tig0021939:+51756 | Msa1395290:CDS |
| GATCAAAACCACATTTAACA+AGG | 0.611615 | tig0021939:-53526 | None:intergenic |
| TGATGAAGAGGAAATCAAAG+AGG | 0.613658 | tig0021939:+51755 | Msa1395290:CDS |
| AAAATGGAACTTAAATAACA+TGG | 0.614120 | tig0021939:-54296 | None:intergenic |
| TAAAGTTGAAAAGGAAAACA+AGG | 0.627416 | tig0021939:+53103 | Msa1395290:CDS |
| GGATGCCCTTTACTTCGAGT+CGG | 0.636093 | tig0021939:-53764 | None:intergenic |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | tig0021939:+52313 | Msa1395290:CDS |
| AAAATTCAAAGAATTTCAAG+TGG | 0.644675 | tig0021939:+53211 | Msa1395290:CDS |
| ATCAAAACCACATTTAACAA+GGG | 0.648419 | tig0021939:-53525 | None:intergenic |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | tig0021939:+52311 | Msa1395290:CDS |
| ACTTGGGGCTGGAGATGCTG+AGG | 0.650883 | tig0021939:+52328 | Msa1395290:CDS |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | tig0021939:+51960 | Msa1395290:CDS |
| ACCATCTTCCACAATGCCAG+GGG | 0.656502 | tig0021939:-53702 | None:intergenic |
| ACAGAGTGGAAATCAACAAG+AGG | 0.665527 | tig0021939:+53865 | Msa1395290:CDS |
| CTGTTAACTTAAGAACACAA+AGG | 0.666537 | tig0021939:-53433 | None:intergenic |
| CTTGTACTTTAGATGCACAC+AGG | 0.674948 | tig0021939:-53960 | None:intergenic |
| TTTGGGATGAATGGACATGG+TGG | 0.686298 | tig0021939:+54146 | Msa1395290:CDS |
| ACGACAACGGATCATTCACA+TGG | 0.717284 | tig0021939:-54463 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATACATATATGTTTTT+AGG | + | tig0021939:54109-54128 | Msa1395290:intron | 10.0% |
| !!! | TTAATACATATATGTTTTTA+GGG | + | tig0021939:54110-54129 | Msa1395290:intron | 10.0% |
| !! | GTCTAATATTCAATATTTAA+TGG | + | tig0021939:53932-53951 | Msa1395290:intron | 15.0% |
| !!! | TAATACATATATGTTTTTAG+GGG | + | tig0021939:54111-54130 | Msa1395290:intron | 15.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | + | tig0021939:52148-52167 | Msa1395290:CDS | 20.0% |
| !!! | AAATTCTTTGAATTTTGCAT+TGG | - | tig0021939:53207-53226 | None:intergenic | 20.0% |
| !! | AAAATTCAAAGAATTTCAAG+TGG | + | tig0021939:53211-53230 | Msa1395290:CDS | 20.0% |
| !! | AATTAAAGATATAGTGTTTG+AGG | + | tig0021939:53331-53350 | Msa1395290:CDS | 20.0% |
| !!! | AATTCAAAGGTATTTTATGT+AGG | + | tig0021939:53405-53424 | Msa1395290:CDS | 20.0% |
| !!! | CATTTTAAACAAATCATCAT+CGG | - | tig0021939:53633-53652 | None:intergenic | 20.0% |
| !!! | ATGATGATTTGTTTAAAATG+AGG | + | tig0021939:53633-53652 | Msa1395290:CDS | 20.0% |
| !!! | ATTTGTTTAAAATGAGGAAT+TGG | + | tig0021939:53639-53658 | Msa1395290:CDS | 20.0% |
| !! | AATATTCAATATTTAATGGC+AGG | + | tig0021939:53936-53955 | Msa1395290:intron | 20.0% |
| !! | ATATTCAATATTTAATGGCA+GGG | + | tig0021939:53937-53956 | Msa1395290:intron | 20.0% |
| !!! | AATACATATATGTTTTTAGG+GGG | + | tig0021939:54112-54131 | Msa1395290:intron | 20.0% |
| !! | AAAATGGAACTTAAATAACA+TGG | - | tig0021939:54299-54318 | None:intergenic | 20.0% |
| ! | CTAAATATAGTTCCAACTTT+AGG | - | tig0021939:51837-51856 | None:intergenic | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | + | tig0021939:51927-51946 | Msa1395290:CDS | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | + | tig0021939:51928-51947 | Msa1395290:CDS | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | + | tig0021939:52059-52078 | Msa1395290:CDS | 25.0% |
| !! | AAGCATAAATTTTCGATCAA+TGG | + | tig0021939:52223-52242 | Msa1395290:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | + | tig0021939:52297-52316 | Msa1395290:CDS | 25.0% |
| ! | TTTGTGGCATATAATGAAAA+AGG | + | tig0021939:52754-52773 | Msa1395290:intron | 25.0% |
| !! | TTGAACTTCATGATAATGAA+TGG | + | tig0021939:52900-52919 | Msa1395290:intron | 25.0% |
| ! | TATTTGATGAAAGAAATCGT+TGG | + | tig0021939:52933-52952 | Msa1395290:intron | 25.0% |
| ! | ATTTGATGAAAGAAATCGTT+GGG | + | tig0021939:52934-52953 | Msa1395290:intron | 25.0% |
| ! | ATTGAGAGATAAAGTTGAAA+AGG | + | tig0021939:53094-53113 | Msa1395290:CDS | 25.0% |
| ! | TAAAGTTGAAAAGGAAAACA+AGG | + | tig0021939:53103-53122 | Msa1395290:CDS | 25.0% |
| !!! | ATAGCTTGTATAAGTCATTT+TGG | + | tig0021939:53152-53171 | Msa1395290:CDS | 25.0% |
| !! | TGTTGTTTGTTTCAATTCAA+AGG | + | tig0021939:53392-53411 | Msa1395290:CDS | 25.0% |
| ! | ATCAAAACCACATTTAACAA+GGG | - | tig0021939:53528-53547 | None:intergenic | 25.0% |
| !!! | ACTCTGTTGACTTTTTTTTT+GGG | - | tig0021939:53852-53871 | None:intergenic | 25.0% |
| ! | TTCCTGTAACATTAATATTG+TGG | + | tig0021939:54257-54276 | Msa1395290:three_prime_UTR | 25.0% |
| ! | ATCCACAATATTAATGTTAC+AGG | - | tig0021939:54262-54281 | None:intergenic | 25.0% |
| ! | TTCATGACTTGAGAATAAAA+TGG | - | tig0021939:54315-54334 | None:intergenic | 25.0% |
| ATTTGTATCTTCTGATGAAG+AGG | + | tig0021939:51743-51762 | Msa1395290:CDS | 30.0% | |
| GAAGATGAAAAACCTAAAGT+TGG | + | tig0021939:51822-51841 | Msa1395290:CDS | 30.0% | |
| ! | GGGTTTTTGTTAAAGGATTT+GGG | - | tig0021939:52022-52041 | None:intergenic | 30.0% |
| ! | TGGGTTTTTGTTAAAGGATT+TGG | - | tig0021939:52023-52042 | None:intergenic | 30.0% |
| GGTTATGAGAATATGACATT+TGG | + | tig0021939:52260-52279 | Msa1395290:CDS | 30.0% | |
| ! | GAATATGACATTTGGTGAAA+AGG | + | tig0021939:52268-52287 | Msa1395290:CDS | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | + | tig0021939:52427-52446 | Msa1395290:intron | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | - | tig0021939:52624-52643 | None:intergenic | 30.0% |
| TTACTTGGTTATTCCAAACA+TGG | + | tig0021939:52624-52643 | Msa1395290:intron | 30.0% | |
| ATCCATGAAAAATGCAATTG+CGG | + | tig0021939:52700-52719 | Msa1395290:intron | 30.0% | |
| ! | TGTTTTCATAGACTCGTAAT+TGG | - | tig0021939:52804-52823 | None:intergenic | 30.0% |
| TTTGAGTAAGAGTGATTTCA+TGG | + | tig0021939:52850-52869 | Msa1395290:intron | 30.0% | |
| ! | TCATGATAATGAATGGTTGA+AGG | + | tig0021939:52907-52926 | Msa1395290:intron | 30.0% |
| ! | CATGATAATGAATGGTTGAA+GGG | + | tig0021939:52908-52927 | Msa1395290:intron | 30.0% |
| ! | ATGATAATGAATGGTTGAAG+GGG | + | tig0021939:52909-52928 | Msa1395290:intron | 30.0% |
| ! | ATATGAAAGAGACACGTTTT+GGG | + | tig0021939:52964-52983 | Msa1395290:intron | 30.0% |
| !!! | GTATGAACTCGTTTTTTTGA+TGG | + | tig0021939:53017-53036 | Msa1395290:intron | 30.0% |
| ! | ATTCAAAGAATTTCAAGTGG+AGG | + | tig0021939:53214-53233 | Msa1395290:CDS | 30.0% |
| CTGTTAACTTAAGAACACAA+AGG | - | tig0021939:53436-53455 | None:intergenic | 30.0% | |
| CTTTGTGTTCTTAAGTTAAC+AGG | + | tig0021939:53434-53453 | Msa1395290:CDS | 30.0% | |
| TGAGAGAAAATATAAGAGGA+TGG | - | tig0021939:53476-53495 | None:intergenic | 30.0% | |
| GATCAAAACCACATTTAACA+AGG | - | tig0021939:53529-53548 | None:intergenic | 30.0% | |
| !!! | TGTGGTTTTGATCATTTAGT+TGG | + | tig0021939:53536-53555 | Msa1395290:CDS | 30.0% |
| TAAAATGAGGAATTGGATCA+AGG | + | tig0021939:53646-53665 | Msa1395290:CDS | 30.0% | |
| ! | TTAGAAGACTTCCTTTTTGA+AGG | - | tig0021939:53791-53810 | None:intergenic | 30.0% |
| !!! | CACTCTGTTGACTTTTTTTT+TGG | - | tig0021939:53853-53872 | None:intergenic | 30.0% |
| CAAAAAAAAAGTCAACAGAG+TGG | + | tig0021939:53851-53870 | Msa1395290:CDS | 30.0% | |
| !!! | CAAATTAGTTTTGGGATGAA+TGG | + | tig0021939:54137-54156 | Msa1395290:CDS | 30.0% |
| ! | GGTATTGAATTTGGATTGAA+GGG | - | tig0021939:54188-54207 | None:intergenic | 30.0% |
| !! | AGGTATTGAATTTGGATTGA+AGG | - | tig0021939:54189-54208 | None:intergenic | 30.0% |
| !! | TCACTCATAGGTATTGAATT+TGG | - | tig0021939:54197-54216 | None:intergenic | 30.0% |
| TATTCTCAAGTCATGAATCA+TGG | + | tig0021939:54318-54337 | Msa1395290:three_prime_UTR | 30.0% | |
| TTCCTATTTCGAATTGTTAC+AGG | + | tig0021939:54344-54363 | Msa1395290:three_prime_UTR | 30.0% | |
| TACCTGTAACAATTCGAAAT+AGG | - | tig0021939:54349-54368 | None:intergenic | 30.0% | |
| !! | TGTCAGTTTGTTCTTTTTGT+AGG | + | tig0021939:54433-54452 | Msa1395290:three_prime_UTR | 30.0% |
| TGATGAAGAGGAAATCAAAG+AGG | + | tig0021939:51755-51774 | Msa1395290:CDS | 35.0% | |
| GATGAAGAGGAAATCAAAGA+GGG | + | tig0021939:51756-51775 | Msa1395290:CDS | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | + | tig0021939:51885-51904 | Msa1395290:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | - | tig0021939:51898-51917 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | - | tig0021939:51899-51918 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | + | tig0021939:51980-51999 | Msa1395290:CDS | 35.0% | |
| ! | ATGCACTGGGTTTTTGTTAA+AGG | - | tig0021939:52029-52048 | None:intergenic | 35.0% |
| TTTAACAAAAACCCAGTGCA+TGG | + | tig0021939:52028-52047 | Msa1395290:CDS | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | - | tig0021939:52133-52152 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | + | tig0021939:52165-52184 | Msa1395290:CDS | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | + | tig0021939:52191-52210 | Msa1395290:CDS | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | + | tig0021939:52239-52258 | Msa1395290:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | + | tig0021939:52426-52445 | Msa1395290:intron | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | + | tig0021939:52464-52483 | Msa1395290:intron | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | - | tig0021939:52546-52565 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | - | tig0021939:52547-52566 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | - | tig0021939:52548-52567 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | + | tig0021939:52548-52567 | Msa1395290:intron | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | + | tig0021939:52609-52628 | Msa1395290:intron | 35.0% | |
| TGATCGGTAATTATGGCATT+TGG | - | tig0021939:52674-52693 | None:intergenic | 35.0% | |
| TCTGTCTTGATCGGTAATTA+TGG | - | tig0021939:52681-52700 | None:intergenic | 35.0% | |
| TTTCATGGATCTGTCTTGAT+CGG | - | tig0021939:52690-52709 | None:intergenic | 35.0% | |
| !! | GAGTATCTACTTAGCTTTTC+TGG | - | tig0021939:52782-52801 | None:intergenic | 35.0% |
| AGAGTGATTTCATGGAAAAG+TGG | + | tig0021939:52858-52877 | Msa1395290:intron | 35.0% | |
| GAGTGATTTCATGGAAAAGT+GGG | + | tig0021939:52859-52878 | Msa1395290:intron | 35.0% | |
| ! | CATATGAAAGAGACACGTTT+TGG | + | tig0021939:52963-52982 | Msa1395290:intron | 35.0% |
| !! | AAGGAAAACAAGGCTGATTT+TGG | + | tig0021939:53113-53132 | Msa1395290:CDS | 35.0% |
| !! | TCATACTTGCTTTGAGAGAT+TGG | + | tig0021939:53256-53275 | Msa1395290:CDS | 35.0% |
| CCACTGAGAGAAAATATAAG+AGG | - | tig0021939:53480-53499 | None:intergenic | 35.0% | |
| ! | CCTCTTATATTTTCTCTCAG+TGG | + | tig0021939:53477-53496 | Msa1395290:CDS | 35.0% |
| ! | CTTATATTTTCTCTCAGTGG+AGG | + | tig0021939:53480-53499 | Msa1395290:CDS | 35.0% |
| AGACATACCCTTGTTAAATG+TGG | + | tig0021939:53518-53537 | Msa1395290:CDS | 35.0% | |
| ! | CTTTTATGAAGTTGCTTCTG+AGG | + | tig0021939:53598-53617 | Msa1395290:CDS | 35.0% |
| GTTCAAGTAGTTGATCTAGT+TGG | + | tig0021939:53988-54007 | Msa1395290:CDS | 35.0% | |
| !! | TAGGGGGAACAAATTAGTTT+TGG | + | tig0021939:54128-54147 | Msa1395290:intron | 35.0% |
| !!! | AGGGGGAACAAATTAGTTTT+GGG | + | tig0021939:54129-54148 | Msa1395290:intron | 35.0% |
| ACCTATGAGTGAAGTAAATC+AGG | + | tig0021939:54205-54224 | Msa1395290:CDS | 35.0% | |
| ACCTGATTTACTTCACTCAT+AGG | - | tig0021939:54209-54228 | None:intergenic | 35.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | + | tig0021939:51884-51903 | Msa1395290:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | + | tig0021939:51891-51910 | Msa1395290:CDS | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | + | tig0021939:51960-51979 | Msa1395290:CDS | 40.0% | |
| ATTCAATCTAGCCATGCACT+GGG | - | tig0021939:52042-52061 | None:intergenic | 40.0% | |
| CTAAAATAGCGTGCTTTGTC+AGG | - | tig0021939:52134-52153 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | - | tig0021939:52176-52195 | None:intergenic | 40.0% |
| ! | AGCCGCAATTGCATTTTTCA+TGG | - | tig0021939:52705-52724 | None:intergenic | 40.0% |
| AACGTGTCTCTTTCATATGC+AGG | - | tig0021939:52962-52981 | None:intergenic | 40.0% | |
| ! | TTGCATTGGTGAATGCTTTC+TGG | - | tig0021939:53193-53212 | None:intergenic | 40.0% |
| !! | ACTTGCTTTGAGAGATTGGA+AGG | + | tig0021939:53260-53279 | Msa1395290:CDS | 40.0% |
| CTCAAAGTCTTTCTCGTTGA+AGG | - | tig0021939:53360-53379 | None:intergenic | 40.0% | |
| ! | TATTTTCTCTCAGTGGAGGA+AGG | + | tig0021939:53484-53503 | Msa1395290:CDS | 40.0% |
| CTTTACTTCGAGTCGGTATA+GGG | - | tig0021939:53760-53779 | None:intergenic | 40.0% | |
| !! | CTATACCGACTCGAAGTAAA+GGG | + | tig0021939:53759-53778 | Msa1395290:CDS | 40.0% |
| !! | GAAGACTTCCTTTTTGAAGG+AGG | - | tig0021939:53788-53807 | None:intergenic | 40.0% |
| ACAGAGTGGAAATCAACAAG+AGG | + | tig0021939:53865-53884 | Msa1395290:CDS | 40.0% | |
| CTTGTACTTTAGATGCACAC+AGG | - | tig0021939:53963-53982 | None:intergenic | 40.0% | |
| !!! | AGTTTTGGGATGAATGGACA+TGG | + | tig0021939:54143-54162 | Msa1395290:CDS | 40.0% |
| CATTCAATCTAGCCATGCAC+TGG | - | tig0021939:52043-52062 | None:intergenic | 45.0% | |
| TGGATCCTCGTTTGAAAAGG+AGG | + | tig0021939:52168-52187 | Msa1395290:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | + | tig0021939:52311-52330 | Msa1395290:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | + | tig0021939:52312-52331 | Msa1395290:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | + | tig0021939:52533-52552 | Msa1395290:intron | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | - | tig0021939:52539-52558 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | - | tig0021939:52565-52584 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | + | tig0021939:52565-52584 | Msa1395290:intron | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | + | tig0021939:52566-52585 | Msa1395290:intron | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | + | tig0021939:52589-52608 | Msa1395290:intron | 45.0% |
| GCATGCACTCTAACCATGTT+TGG | - | tig0021939:52640-52659 | None:intergenic | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | + | tig0021939:52641-52660 | Msa1395290:intron | 45.0% | |
| ! | ACCATCGATGACGAGCTTTT+GGG | - | tig0021939:52733-52752 | None:intergenic | 45.0% |
| !! | TGAAAGAGACACGTTTTGGG+CGG | + | tig0021939:52967-52986 | Msa1395290:intron | 45.0% |
| AACCATCTTCCACAATGCCA+GGG | - | tig0021939:53706-53725 | None:intergenic | 45.0% | |
| CCTTTACTTCGAGTCGGTAT+AGG | - | tig0021939:53761-53780 | None:intergenic | 45.0% | |
| !! | CCTATACCGACTCGAAGTAA+AGG | + | tig0021939:53758-53777 | Msa1395290:CDS | 45.0% |
| !! | AAGGGCATCCTCCTTCAAAA+AGG | + | tig0021939:53777-53796 | Msa1395290:CDS | 45.0% |
| ! | TTTGGGATGAATGGACATGG+TGG | + | tig0021939:54146-54165 | Msa1395290:CDS | 45.0% |
| AGTGAGGAGACTACGACTTG+GGG | + | tig0021939:52313-52332 | Msa1395290:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | + | tig0021939:52444-52463 | Msa1395290:intron | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | tig0021939:52445-52464 | Msa1395290:intron | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | - | tig0021939:52574-52593 | None:intergenic | 50.0% | |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | + | tig0021939:52586-52605 | Msa1395290:intron | 50.0% |
| TCCCAAAAGCTCGTCATCGA+TGG | + | tig0021939:52729-52748 | Msa1395290:intron | 50.0% | |
| ! | CACCATCGATGACGAGCTTT+TGG | - | tig0021939:52734-52753 | None:intergenic | 50.0% |
| CTCGTCATCGATGGTGTTTG+TGG | + | tig0021939:52738-52757 | Msa1395290:intron | 50.0% | |
| !! | GAAAGAGACACGTTTTGGGC+GGG | + | tig0021939:52968-52987 | Msa1395290:intron | 50.0% |
| !! | ACCTCTAAAGAAGCATCCCC+TGG | + | tig0021939:53686-53705 | Msa1395290:CDS | 50.0% |
| ACCATCTTCCACAATGCCAG+GGG | - | tig0021939:53705-53724 | None:intergenic | 50.0% | |
| GAACCATCTTCCACAATGCC+AGG | - | tig0021939:53707-53726 | None:intergenic | 50.0% | |
| GGATGCCCTTTACTTCGAGT+CGG | - | tig0021939:53767-53786 | None:intergenic | 50.0% | |
| GCCAGGGGATGCTTCTTTAG+AGG | - | tig0021939:53690-53709 | None:intergenic | 55.0% | |
| !! | AGAAGCATCCCCTGGCATTG+TGG | + | tig0021939:53694-53713 | Msa1395290:CDS | 55.0% |
| TCCCCTGGCATTGTGGAAGA+TGG | + | tig0021939:53701-53720 | Msa1395290:CDS | 55.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | + | tig0021939:52317-52336 | Msa1395290:CDS | 60.0% |
| ACTTGGGGCTGGAGATGCTG+AGG | + | tig0021939:52328-52347 | Msa1395290:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021939 | gene | 51735 | 54478 | 51735 | ID=Msa1395290;Name=Msa1395290 |
| tig0021939 | mRNA | 51735 | 54478 | 51735 | ID=Msa1395290-mRNA-1;Parent=Msa1395290;Name=Msa1395290-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.66|0.5|1|1|0.75|4|240|559 |
| tig0021939 | exon | 51735 | 52403 | 51735 | ID=Msa1395290-mRNA-1:exon:14837;Parent=Msa1395290-mRNA-1 |
| tig0021939 | exon | 53056 | 53886 | 53056 | ID=Msa1395290-mRNA-1:exon:14838;Parent=Msa1395290-mRNA-1 |
| tig0021939 | exon | 53958 | 54029 | 53958 | ID=Msa1395290-mRNA-1:exon:14839;Parent=Msa1395290-mRNA-1 |
| tig0021939 | exon | 54131 | 54478 | 54131 | ID=Msa1395290-mRNA-1:exon:14840;Parent=Msa1395290-mRNA-1 |
| tig0021939 | CDS | 51735 | 52403 | 51735 | ID=Msa1395290-mRNA-1:cds;Parent=Msa1395290-mRNA-1 |
| tig0021939 | CDS | 53056 | 53886 | 53056 | ID=Msa1395290-mRNA-1:cds;Parent=Msa1395290-mRNA-1 |
| tig0021939 | CDS | 53958 | 54029 | 53958 | ID=Msa1395290-mRNA-1:cds;Parent=Msa1395290-mRNA-1 |
| tig0021939 | CDS | 54131 | 54238 | 54131 | ID=Msa1395290-mRNA-1:cds;Parent=Msa1395290-mRNA-1 |
| tig0021939 | three_prime_UTR | 54239 | 54478 | 54239 | ID=Msa1395290-mRNA-1:three_prime_utr;Parent=Msa1395290-mRNA-1 |
| Gene Sequence |
| Protein sequence |