AlfalfaGEDB | Msa1395990

M. sativa cultivar zhongmu-4 / Msa1395990

KEGG: -
GO: -
PFAM: PF14379.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395990	XP_003624830.2	74.638	276	12	4	1	219	1	275	8.58e-128	372

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395990	sp\|Q9SJW0\|PHL7_ARATH	37.255	255	72	8	27	210	3	240	2.51e-32	121

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395990	G7L3R4	74.638	276	12	4	1	219	1	275	4.10e-128	372

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TFs/TRs:

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Gene ID	Type	Classification
Msa1395990	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395990	MtrunA17_Chr7g0254981	73.571	280	12	4	1	219	1	279	7.12e-131	369
Msa1395990	MtrunA17_Chr2g0291021	39.594	197	42	5	1	129	1	188	2.61e-32	119
Msa1395990	MtrunA17_Chr5g0409731	78.431	51	11	0	48	98	25	75	1.61e-24	98.2
Msa1395990	MtrunA17_Chr2g0310011	76.471	51	12	0	48	98	35	85	2.01e-22	93.6
Msa1395990	MtrunA17_Chr8g0356501	74.510	51	13	0	48	98	37	87	6.43e-22	92.0
Msa1395990	MtrunA17_Chr1g0197171	72.549	51	14	0	48	98	44	94	2.22e-21	89.7
Msa1395990	MtrunA17_Chr5g0417521	67.308	52	17	0	47	98	14	65	2.60e-21	90.5
Msa1395990	MtrunA17_Chr7g0261911	36.774	155	38	3	31	125	241	395	3.98e-21	90.9
Msa1395990	MtrunA17_Chr6g0461641	67.308	52	17	0	47	98	41	92	4.01e-21	90.5
Msa1395990	MtrunA17_Chr4g0042451	67.308	52	17	0	47	98	16	67	8.77e-21	89.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395990	AT2G01060.1	37.255	255	72	8	27	210	3	240	2.55e-33	121
Msa1395990	AT4G13640.1	76.471	51	12	0	48	98	37	87	9.20e-24	96.7
Msa1395990	AT4G13640.2	76.471	51	12	0	48	98	37	87	1.04e-23	96.7
Msa1395990	AT3G24120.1	74.510	51	13	0	48	98	41	91	4.46e-23	94.7
Msa1395990	AT3G24120.2	74.510	51	13	0	48	98	41	91	4.62e-23	94.7
Msa1395990	AT3G12730.1	72.549	51	14	0	48	98	23	73	1.17e-22	92.4
Msa1395990	AT1G79430.2	40.458	131	19	2	48	119	34	164	1.73e-22	94.4
Msa1395990	AT3G04450.1	34.010	197	57	5	42	171	231	421	2.82e-22	94.4
Msa1395990	AT3G04450.4	35.393	178	49	4	42	159	191	362	3.05e-22	94.0
Msa1395990	AT3G04450.2	35.393	178	49	4	42	159	191	362	3.05e-22	94.0

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Find 79 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTCAAGGCGGTGGTGG+TGG	0.477044	tig0021982:-24067	Msa1395990:CDS
AAATTGAAGCATTCAGAATC+TGG	0.331873	tig0021982:+24330	None:intergenic
AACTTGTATGAAGATGATGC+TGG	0.625161	tig0021982:-19891	Msa1395990:CDS
AAGTGTTTCCGATGCTGCCA+AGG	0.559809	tig0021982:+20103	None:intergenic
AATGTTCAACCTGCTGGAGG+TGG	0.620630	tig0021982:-23998	Msa1395990:CDS
ACAAATGAGAATTGAAGCCC+AGG	0.536357	tig0021982:-20174	Msa1395990:CDS
ACATGATAAATGGTCAGTCC+AGG	0.573039	tig0021982:+21478	None:intergenic
AGAAAGAGAGAGAGAAAATA+GGG	0.356544	tig0021982:+24373	None:intergenic
AGACCCAGAAGGCTCTGATA+GGG	0.512319	tig0021982:+20052	None:intergenic
AGCAATCTTTCTTGTAACTT+GGG	0.461914	tig0021982:+19950	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAGAGAGAGAGAAAATA+GGG	+	tig0021982:19918-19937	None:intergenic	30.0%
AAGTCAAATGGAAAGTTTCT+AGG	+	tig0021982:20029-20048	None:intergenic	30.0%
TAGAAACTTTCCATTTGACT+TGG	-	tig0021982:20028-20047	Msa1395990:CDS	30.0%
ATGATGCTACATAAATCTCA+AGG	-	tig0021982:20209-20228	Msa1395990:intron	30.0%
AAGCTACAAAGTTTAACTGT+TGG	-	tig0021982:20584-20603	Msa1395990:intron	30.0%
TTGTAGATATGTCAGAATCA+CGG	+	tig0021982:20627-20646	None:intergenic	30.0%
ATAGGCTAAACCTTCTAAAT+TGG	-	tig0021982:20658-20677	Msa1395990:intron	30.0%
TAGGCTAAACCTTCTAAATT+GGG	-	tig0021982:20659-20678	Msa1395990:intron	30.0%
TTGCTAGAACATGCTAAAAA+GGG	+	tig0021982:20813-20832	None:intergenic	30.0%
ATTGCTAGAACATGCTAAAA+AGG	+	tig0021982:20814-20833	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021982	gene	19434	24876	19434	ID=Msa1395990;Name=Msa1395990
tig0021982	mRNA	19434	24876	19434	ID=Msa1395990-mRNA-1;Parent=Msa1395990;Name=Msa1395990-mRNA-1;_AED=0.17;_eAED=0.17;_QI=238\|0.75\|1\|1\|0\|0.4\|5\|402\|222
tig0021982	exon	19434	20210	19434	ID=Msa1395990-mRNA-1:exon:15258;Parent=Msa1395990-mRNA-1
tig0021982	exon	21462	21538	21462	ID=Msa1395990-mRNA-1:exon:15257;Parent=Msa1395990-mRNA-1
tig0021982	exon	23918	24141	23918	ID=Msa1395990-mRNA-1:exon:15256;Parent=Msa1395990-mRNA-1
tig0021982	exon	24316	24481	24316	ID=Msa1395990-mRNA-1:exon:15255;Parent=Msa1395990-mRNA-1
tig0021982	exon	24812	24876	24812	ID=Msa1395990-mRNA-1:exon:15254;Parent=Msa1395990-mRNA-1
tig0021982	five_prime_UTR	24812	24876	24812	ID=Msa1395990-mRNA-1:five_prime_utr;Parent=Msa1395990-mRNA-1
tig0021982	five_prime_UTR	24316	24481	24316	ID=Msa1395990-mRNA-1:five_prime_utr;Parent=Msa1395990-mRNA-1
tig0021982	five_prime_UTR	24135	24141	24135	ID=Msa1395990-mRNA-1:five_prime_utr;Parent=Msa1395990-mRNA-1
tig0021982	CDS	23918	24134	23918	ID=Msa1395990-mRNA-1:cds;Parent=Msa1395990-mRNA-1
tig0021982	CDS	21462	21538	21462	ID=Msa1395990-mRNA-1:cds;Parent=Msa1395990-mRNA-1
tig0021982	CDS	19836	20210	19836	ID=Msa1395990-mRNA-1:cds;Parent=Msa1395990-mRNA-1
tig0021982	three_prime_UTR	19434	19835	19434	ID=Msa1395990-mRNA-1:three_prime_utr;Parent=Msa1395990-mRNA-1

Gene Sequence

>Msa1395990

ATGTATCATGCAAAGAAGTTTCCGGAGGAGACGATGATGCTACATAAATCTCAAGGCGGTGGTGGTGGTGAACAGTTTGCAAATGGTGGGGGTTTGAATGGATCTGCTGTGAAAAATGTTCAACCTGCTGGAGGTGGTGGGAAGCAGCGTTTGCGTTGGACGTCCGATCTTCATGACCGTTTTGTCGATGCTATTACGCAGCTTGGTGGACCAGATAGAGCAACACCGAAAGGTGTTTTGAGAGTGATGGGTGTGCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCCCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAACTAGGTAGTACCTTGGCAGCATCGGAAACACTTCCGCTGTCCCATGATAAGCAAAACCAGCCCCTATCAGAGCCTTCTGGGTCTAGTGATGCCCTTGCAGGCACTTTTTCTCCCCATAAAAAACAGAGAATTGATGAAGGTTCAAAGGATGGCTTCACTGCATCCCAAGTTACAAGAAAGATTGCTCAGAAGAATGATTGTAATGTTGGTCCTTTGGATCCAAACTTGTATGAAGATGATGCTGGCTATGGATTTGATTTGGAAACAGAAAATGACGACGGCAATGAGAGTGAGCAGTAA

Protein sequence

>Msa1395990

MYHAKKFPEETMMLHKSQGGGGGEQFANGGGLNGSAVKNVQPAGGGGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETLPLSHDKQNQPLSEPSGSSDALAGTFSPHKKQRIDEGSKDGFTASQVTRKIAQKNDCNVGPLDPNLYEDDAGYGFDLETENDDGNESEQ*