Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396530 | XP_003592857.1 | 79.179 | 341 | 24 | 6 | 1 | 337 | 1 | 298 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396530 | sp|Q9C6P5|RAVL2_ARATH | 49.091 | 330 | 125 | 6 | 33 | 336 | 22 | 334 | 4.51e-97 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396530 | G7IB22 | 79.179 | 341 | 24 | 6 | 1 | 337 | 1 | 298 | 0.0 | 528 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1396530 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396530 | MtrunA17_Chr1g0213701 | 79.179 | 341 | 24 | 6 | 1 | 337 | 1 | 298 | 0.0 | 528 |
| Msa1396530 | MtrunA17_Chr1g0198661 | 42.609 | 230 | 110 | 4 | 38 | 245 | 63 | 292 | 1.82e-53 | 180 |
| Msa1396530 | MtrunA17_Chr5g0422501 | 43.363 | 226 | 110 | 5 | 38 | 245 | 106 | 331 | 5.67e-49 | 169 |
| Msa1396530 | MtrunA17_Chr8g0345771 | 56.667 | 90 | 39 | 0 | 156 | 245 | 170 | 259 | 2.41e-28 | 115 |
| Msa1396530 | MtrunA17_Chr7g0276471 | 55.556 | 90 | 40 | 0 | 156 | 245 | 116 | 205 | 4.59e-28 | 113 |
| Msa1396530 | MtrunA17_Chr1g0178071 | 54.945 | 91 | 39 | 1 | 157 | 245 | 75 | 165 | 6.27e-28 | 111 |
| Msa1396530 | MtrunA17_Chr7g0266821 | 58.333 | 84 | 34 | 1 | 162 | 245 | 65 | 147 | 1.34e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396530 | AT1G50680.1 | 49.091 | 330 | 125 | 6 | 33 | 336 | 22 | 334 | 4.58e-98 | 293 |
| Msa1396530 | AT1G51120.1 | 54.643 | 280 | 99 | 6 | 33 | 284 | 41 | 320 | 7.09e-97 | 291 |
| Msa1396530 | AT3G25730.1 | 46.903 | 226 | 95 | 7 | 36 | 246 | 59 | 274 | 1.90e-54 | 181 |
| Msa1396530 | AT1G13260.1 | 43.836 | 219 | 115 | 2 | 36 | 246 | 59 | 277 | 2.70e-54 | 181 |
| Msa1396530 | AT1G25560.1 | 42.986 | 221 | 114 | 4 | 38 | 246 | 71 | 291 | 1.08e-51 | 175 |
| Msa1396530 | AT1G68840.2 | 42.791 | 215 | 115 | 4 | 38 | 245 | 64 | 277 | 3.28e-49 | 168 |
| Msa1396530 | AT1G68840.1 | 42.791 | 215 | 115 | 4 | 38 | 245 | 64 | 277 | 3.28e-49 | 168 |
| Msa1396530 | AT4G01500.1 | 55.769 | 104 | 43 | 2 | 156 | 259 | 34 | 134 | 3.36e-29 | 115 |
| Msa1396530 | AT1G01030.2 | 57.778 | 90 | 38 | 0 | 156 | 245 | 54 | 143 | 3.44e-29 | 115 |
| Msa1396530 | AT1G01030.1 | 57.778 | 90 | 38 | 0 | 156 | 245 | 54 | 143 | 4.52e-29 | 115 |
| Msa1396530 | AT2G46870.1 | 56.044 | 91 | 40 | 0 | 156 | 246 | 33 | 123 | 1.78e-28 | 112 |
| Msa1396530 | AT3G11580.1 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 4.85e-28 | 110 |
| Msa1396530 | AT3G11580.4 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 1.07e-27 | 108 |
| Msa1396530 | AT3G11580.2 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 1.07e-27 | 108 |
| Msa1396530 | AT3G11580.5 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 1.07e-27 | 108 |
| Msa1396530 | AT2G36080.4 | 54.348 | 92 | 39 | 1 | 157 | 245 | 37 | 128 | 1.25e-27 | 106 |
| Msa1396530 | AT2G36080.2 | 54.348 | 92 | 39 | 1 | 157 | 245 | 37 | 128 | 1.25e-27 | 106 |
| Msa1396530 | AT2G36080.1 | 54.348 | 92 | 39 | 1 | 157 | 245 | 37 | 128 | 1.68e-27 | 108 |
| Msa1396530 | AT2G36080.3 | 54.348 | 92 | 39 | 1 | 157 | 245 | 37 | 128 | 1.68e-27 | 108 |
| Msa1396530 | AT5G06250.4 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 6.98e-27 | 107 |
| Msa1396530 | AT5G06250.5 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 7.18e-27 | 107 |
| Msa1396530 | AT5G06250.2 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 8.50e-27 | 107 |
| Msa1396530 | AT5G06250.3 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 9.57e-27 | 107 |
| Msa1396530 | AT5G06250.1 | 51.515 | 99 | 38 | 1 | 157 | 245 | 45 | 143 | 1.38e-26 | 106 |
| Msa1396530 | AT3G61970.1 | 56.383 | 94 | 36 | 2 | 156 | 245 | 21 | 113 | 1.51e-26 | 107 |
| Msa1396530 | AT3G11580.3 | 55.000 | 100 | 34 | 2 | 157 | 245 | 28 | 127 | 7.66e-26 | 106 |
| Msa1396530 | AT1G35520.1 | 37.037 | 108 | 66 | 2 | 142 | 247 | 109 | 216 | 2.17e-11 | 65.5 |
Find 72 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTATTTGTCAAATTTAT+AGG | 0.145940 | tig0022040:+17609 | None:intergenic |
| GGCAAAGAATGTGTTATTAT+TGG | 0.218931 | tig0022040:-17939 | Msa1396530:CDS |
| TATTCCATGCAAAGTTTCTA+TGG | 0.244957 | tig0022040:+18087 | None:intergenic |
| ATAAAATACAATGGCGTCTT+TGG | 0.254337 | tig0022040:+17641 | None:intergenic |
| GCAAAGAATGTGTTATTATT+GGG | 0.266195 | tig0022040:-17938 | Msa1396530:CDS |
| AAGAAATGTTGCAAAATTAG+AGG | 0.290015 | tig0022040:+17983 | None:intergenic |
| CATGGAGGCTTAAGGCTCTT+TGG | 0.298082 | tig0022040:-17375 | Msa1396530:CDS |
| CAATCTACTAAGATAAATTA+TGG | 0.303691 | tig0022040:-18308 | Msa1396530:CDS |
| ATGCAAATCACCAAAGAATA+TGG | 0.307810 | tig0022040:-18187 | Msa1396530:CDS |
| TATATAGCATGATTTCAAAT+TGG | 0.322219 | tig0022040:-18358 | None:intergenic |
| CGCATTATTATTATTATATG+TGG | 0.336291 | tig0022040:+17398 | None:intergenic |
| GGAAGTTTCGATATTGCTAT+TGG | 0.351130 | tig0022040:-17731 | Msa1396530:CDS |
| GCCACAAACCAAAGGAAAAT+AGG | 0.354261 | tig0022040:+17806 | None:intergenic |
| CCTTCTTCCCAACATTTGTT+TGG | 0.354495 | tig0022040:+17485 | None:intergenic |
| ATGTCCCTAACCATATTCTT+TGG | 0.362080 | tig0022040:+18177 | None:intergenic |
| ATTACATCAATTAATGAAAA+TGG | 0.362300 | tig0022040:+17573 | None:intergenic |
| TTCTCCGCTTCTGAGCTTGA+TGG | 0.364773 | tig0022040:+18112 | None:intergenic |
| TATAAATTTGACAAATAGTA+AGG | 0.384791 | tig0022040:-17607 | Msa1396530:CDS |
| TATGAAGTAGAGGATGTTGC+AGG | 0.394052 | tig0022040:-18269 | Msa1396530:CDS |
| ACATAGGTTCTTGAACTGTT+TGG | 0.399593 | tig0022040:+18063 | None:intergenic |
| AATCACCAAAGAATATGGTT+AGG | 0.402926 | tig0022040:-18182 | Msa1396530:CDS |
| GCCTCAACAAAATGGACATT+GGG | 0.403364 | tig0022040:-18222 | Msa1396530:CDS |
| ATTATGATCATGATTAGAAA+TGG | 0.417587 | tig0022040:-18014 | Msa1396530:CDS |
| GTGATGTTGGTAAACTCAAT+AGG | 0.419636 | tig0022040:-17857 | Msa1396530:CDS |
| GGGGTTGTGCCTCAACAAAA+TGG | 0.424759 | tig0022040:-18230 | Msa1396530:CDS |
| CTATATTGACTTTGAAACAT+AGG | 0.426018 | tig0022040:+18047 | None:intergenic |
| ATTTCAAATTGGAGGATGAA+TGG | 0.438567 | tig0022040:-18347 | Msa1396530:CDS |
| CTCTAGTGAACACATAGCTT+TGG | 0.447985 | tig0022040:+17700 | None:intergenic |
| CCAAACAAATGTTGGGAAGA+AGG | 0.452002 | tig0022040:-17485 | Msa1396530:CDS |
| TGGAGATGCCAAACAAATGT+TGG | 0.476126 | tig0022040:-17493 | Msa1396530:CDS |
| CAGGGTGTCAAAAGTTCAAA+GGG | 0.485838 | tig0022040:-18250 | Msa1396530:CDS |
| TGTGAAGGATAAGAAATTGA+AGG | 0.491722 | tig0022040:-17664 | Msa1396530:CDS |
| ATAGCATGATTTCAAATTGG+AGG | 0.493608 | tig0022040:-18355 | None:intergenic |
| TATTATTGGGGTGAAGGGTG+AGG | 0.498083 | tig0022040:-17925 | Msa1396530:CDS |
| GTAATCTACAATGATATTGA+TGG | 0.499329 | tig0022040:-17555 | Msa1396530:CDS |
| AAGGTTAGTTTGCAATGAAG+TGG | 0.504843 | tig0022040:-17466 | Msa1396530:CDS |
| AGAAATGTTGCAAAATTAGA+GGG | 0.510603 | tig0022040:+17984 | None:intergenic |
| TATAATAATAATAATGCGCA+TGG | 0.516250 | tig0022040:-17393 | Msa1396530:CDS |
| ATCTGAAAGAGATGCTGCCA+TGG | 0.516688 | tig0022040:-18150 | Msa1396530:CDS |
| GGAGATGCCAAACAAATGTT+GGG | 0.517841 | tig0022040:-17492 | Msa1396530:CDS |
| ATCACCAAAGAATATGGTTA+GGG | 0.522601 | tig0022040:-18181 | Msa1396530:CDS |
| CACATTCTTTGCCTGCACCT+TGG | 0.523069 | tig0022040:+17949 | None:intergenic |
| TGTTCACTAGAGGATGGAAT+CGG | 0.528136 | tig0022040:-17689 | Msa1396530:CDS |
| ATGTGTTATTATTGGGGTGA+AGG | 0.530392 | tig0022040:-17931 | Msa1396530:CDS |
| TGCCTCAACAAAATGGACAT+TGG | 0.540531 | tig0022040:-18223 | Msa1396530:CDS |
| AGAAATCAAAGCCAAGGTGC+AGG | 0.541294 | tig0022040:-17960 | Msa1396530:CDS |
| TGTGTTATTATTGGGGTGAA+GGG | 0.552552 | tig0022040:-17930 | Msa1396530:CDS |
| ATAATGCGCATGGAGGCTTA+AGG | 0.552920 | tig0022040:-17383 | Msa1396530:CDS |
| GAATTAACACCAAGTGATGT+TGG | 0.555091 | tig0022040:-17870 | Msa1396530:CDS |
| TCCGCTTCTGAGCTTGATGG+TGG | 0.555403 | tig0022040:+18115 | None:intergenic |
| TTTCTTAGAAATCAAAGCCA+AGG | 0.556760 | tig0022040:-17966 | Msa1396530:CDS |
| GCAGGGTGTCAAAAGTTCAA+AGG | 0.558717 | tig0022040:-18251 | Msa1396530:CDS |
| GCCACCATCAAGCTCAGAAG+CGG | 0.559505 | tig0022040:-18116 | Msa1396530:CDS |
| CAAAGAATGTGTTATTATTG+GGG | 0.559724 | tig0022040:-17937 | Msa1396530:CDS |
| ACGTACGAGGTATGAAGTAG+AGG | 0.570592 | tig0022040:-18279 | Msa1396530:CDS |
| TTGAGTTTACCAACATCACT+TGG | 0.572392 | tig0022040:+17861 | None:intergenic |
| ATGACAAACTCATGCGATTG+TGG | 0.577545 | tig0022040:-17752 | Msa1396530:CDS |
| GTTTCAAAGTCAATATAGCA+TGG | 0.588580 | tig0022040:-18042 | Msa1396530:CDS |
| CAAAGCTATGTGTTCACTAG+AGG | 0.590350 | tig0022040:-17699 | Msa1396530:CDS |
| GCTATGTGTTCACTAGAGGA+TGG | 0.591052 | tig0022040:-17695 | Msa1396530:CDS |
| ATAAATTTGACAAATAGTAA+GGG | 0.592698 | tig0022040:-17606 | Msa1396530:CDS |
| ATGAAGTAGAGGATGTTGCA+GGG | 0.600015 | tig0022040:-18268 | Msa1396530:CDS |
| CATATATTGCCACAAACCAA+AGG | 0.617126 | tig0022040:+17798 | None:intergenic |
| AAAGCCATAGAAACTTTGCA+TGG | 0.630622 | tig0022040:-18091 | Msa1396530:CDS |
| AGGATGGAATCGGTTTGTGA+AGG | 0.633521 | tig0022040:-17679 | Msa1396530:CDS |
| AATAATAATAATGCGCATGG+AGG | 0.643929 | tig0022040:-17390 | Msa1396530:CDS |
| TTCACACCTATAAAATACAA+TGG | 0.647499 | tig0022040:+17632 | None:intergenic |
| GGTGGCGCTGTCGTAAGCCA+TGG | 0.650796 | tig0022040:+18133 | None:intergenic |
| GAAATGTTGCAAAATTAGAG+GGG | 0.681722 | tig0022040:+17985 | None:intergenic |
| ATTATGGTGCAAAACGTACG+AGG | 0.696082 | tig0022040:-18292 | Msa1396530:CDS |
| CCTCAACAAAATGGACATTG+GGG | 0.726013 | tig0022040:-18221 | Msa1396530:CDS |
| AGGGTGTCAAAAGTTCAAAG+GGG | 0.762139 | tig0022040:-18249 | Msa1396530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTATTTGTCAAATTTAT+AGG | + | tig0022040:18103-18122 | None:intergenic | 15.0% |
| !! | TATAAATTTGACAAATAGTA+AGG | - | tig0022040:18102-18121 | Msa1396530:CDS | 15.0% |
| !! | ATAAATTTGACAAATAGTAA+GGG | - | tig0022040:18103-18122 | Msa1396530:CDS | 15.0% |
| !! | ATTACATCAATTAATGAAAA+TGG | + | tig0022040:18139-18158 | None:intergenic | 15.0% |
| !! | TTACTATTTGTCAAATTTAT+AGG | + | tig0022040:18103-18122 | None:intergenic | 15.0% |
| !! | TATAAATTTGACAAATAGTA+AGG | - | tig0022040:18102-18121 | Msa1396530:CDS | 15.0% |
| !! | ATAAATTTGACAAATAGTAA+GGG | - | tig0022040:18103-18122 | Msa1396530:CDS | 15.0% |
| !! | ATTACATCAATTAATGAAAA+TGG | + | tig0022040:18139-18158 | None:intergenic | 15.0% |
| !! | CAATCTACTAAGATAAATTA+TGG | - | tig0022040:17401-17420 | Msa1396530:CDS | 20.0% |
| !! | ATTATGATCATGATTAGAAA+TGG | - | tig0022040:17695-17714 | Msa1396530:CDS | 20.0% |
| !! | CGCATTATTATTATTATATG+TGG | + | tig0022040:18314-18333 | None:intergenic | 20.0% |
| !! | TATAATAATAATAATGCGCA+TGG | - | tig0022040:18316-18335 | Msa1396530:CDS | 20.0% |
| !! | CAATCTACTAAGATAAATTA+TGG | - | tig0022040:17401-17420 | Msa1396530:CDS | 20.0% |
| !! | ATTATGATCATGATTAGAAA+TGG | - | tig0022040:17695-17714 | Msa1396530:CDS | 20.0% |
| !! | CGCATTATTATTATTATATG+TGG | + | tig0022040:18314-18333 | None:intergenic | 20.0% |
| !! | TATAATAATAATAATGCGCA+TGG | - | tig0022040:18316-18335 | Msa1396530:CDS | 20.0% |
| !!! | CTATATTGACTTTGAAACAT+AGG | + | tig0022040:17665-17684 | None:intergenic | 25.0% |
| ! | AGAAATGTTGCAAAATTAGA+GGG | + | tig0022040:17728-17747 | None:intergenic | 25.0% |
| ! | AAGAAATGTTGCAAAATTAG+AGG | + | tig0022040:17729-17748 | None:intergenic | 25.0% |
| !! | GCAAAGAATGTGTTATTATT+GGG | - | tig0022040:17771-17790 | Msa1396530:CDS | 25.0% |
| !! | CAAAGAATGTGTTATTATTG+GGG | - | tig0022040:17772-17791 | Msa1396530:CDS | 25.0% |
| ! | TTCACACCTATAAAATACAA+TGG | + | tig0022040:18080-18099 | None:intergenic | 25.0% |
| ! | GTAATCTACAATGATATTGA+TGG | - | tig0022040:18154-18173 | Msa1396530:CDS | 25.0% |
| !!! | ACATTATTCTTTTGAAGAAG+AGG | - | tig0022040:18189-18208 | Msa1396530:CDS | 25.0% |
| !!! | CTATATTGACTTTGAAACAT+AGG | + | tig0022040:17665-17684 | None:intergenic | 25.0% |
| ! | AGAAATGTTGCAAAATTAGA+GGG | + | tig0022040:17728-17747 | None:intergenic | 25.0% |
| ! | AAGAAATGTTGCAAAATTAG+AGG | + | tig0022040:17729-17748 | None:intergenic | 25.0% |
| !! | GCAAAGAATGTGTTATTATT+GGG | - | tig0022040:17771-17790 | Msa1396530:CDS | 25.0% |
| !! | CAAAGAATGTGTTATTATTG+GGG | - | tig0022040:17772-17791 | Msa1396530:CDS | 25.0% |
| ! | TTCACACCTATAAAATACAA+TGG | + | tig0022040:18080-18099 | None:intergenic | 25.0% |
| ! | GTAATCTACAATGATATTGA+TGG | - | tig0022040:18154-18173 | Msa1396530:CDS | 25.0% |
| !!! | ACATTATTCTTTTGAAGAAG+AGG | - | tig0022040:18189-18208 | Msa1396530:CDS | 25.0% |
| ATTTCAAATTGGAGGATGAA+TGG | - | tig0022040:17362-17381 | Msa1396530:CDS | 30.0% | |
| ATGCAAATCACCAAAGAATA+TGG | - | tig0022040:17522-17541 | Msa1396530:CDS | 30.0% | |
| AATCACCAAAGAATATGGTT+AGG | - | tig0022040:17527-17546 | Msa1396530:CDS | 30.0% | |
| ATCACCAAAGAATATGGTTA+GGG | - | tig0022040:17528-17547 | Msa1396530:CDS | 30.0% | |
| TATTCCATGCAAAGTTTCTA+TGG | + | tig0022040:17625-17644 | None:intergenic | 30.0% | |
| GTTTCAAAGTCAATATAGCA+TGG | - | tig0022040:17667-17686 | Msa1396530:CDS | 30.0% | |
| GAAATGTTGCAAAATTAGAG+GGG | + | tig0022040:17727-17746 | None:intergenic | 30.0% | |
| TTTCTTAGAAATCAAAGCCA+AGG | - | tig0022040:17743-17762 | Msa1396530:CDS | 30.0% | |
| ! | GGCAAAGAATGTGTTATTAT+TGG | - | tig0022040:17770-17789 | Msa1396530:CDS | 30.0% |
| !!! | TAGGTAACTGCATGTTTTTT+GGG | + | tig0022040:17887-17906 | None:intergenic | 30.0% |
| !!! | ATAGGTAACTGCATGTTTTT+TGG | + | tig0022040:17888-17907 | None:intergenic | 30.0% |
| TGTGAAGGATAAGAAATTGA+AGG | - | tig0022040:18045-18064 | Msa1396530:CDS | 30.0% | |
| ATAAAATACAATGGCGTCTT+TGG | + | tig0022040:18071-18090 | None:intergenic | 30.0% | |
| ! | AAGACGCCATTGTATTTTAT+AGG | - | tig0022040:18071-18090 | Msa1396530:CDS | 30.0% |
| !! | TTATTCTTTTGAAGAAGAGG+AGG | - | tig0022040:18192-18211 | Msa1396530:CDS | 30.0% |
| AATAATAATAATGCGCATGG+AGG | - | tig0022040:18319-18338 | Msa1396530:CDS | 30.0% | |
| ATTTCAAATTGGAGGATGAA+TGG | - | tig0022040:17362-17381 | Msa1396530:CDS | 30.0% | |
| ATGCAAATCACCAAAGAATA+TGG | - | tig0022040:17522-17541 | Msa1396530:CDS | 30.0% | |
| AATCACCAAAGAATATGGTT+AGG | - | tig0022040:17527-17546 | Msa1396530:CDS | 30.0% | |
| ATCACCAAAGAATATGGTTA+GGG | - | tig0022040:17528-17547 | Msa1396530:CDS | 30.0% | |
| TATTCCATGCAAAGTTTCTA+TGG | + | tig0022040:17625-17644 | None:intergenic | 30.0% | |
| GTTTCAAAGTCAATATAGCA+TGG | - | tig0022040:17667-17686 | Msa1396530:CDS | 30.0% | |
| GAAATGTTGCAAAATTAGAG+GGG | + | tig0022040:17727-17746 | None:intergenic | 30.0% | |
| TTTCTTAGAAATCAAAGCCA+AGG | - | tig0022040:17743-17762 | Msa1396530:CDS | 30.0% | |
| ! | GGCAAAGAATGTGTTATTAT+TGG | - | tig0022040:17770-17789 | Msa1396530:CDS | 30.0% |
| !!! | TAGGTAACTGCATGTTTTTT+GGG | + | tig0022040:17887-17906 | None:intergenic | 30.0% |
| !!! | ATAGGTAACTGCATGTTTTT+TGG | + | tig0022040:17888-17907 | None:intergenic | 30.0% |
| TGTGAAGGATAAGAAATTGA+AGG | - | tig0022040:18045-18064 | Msa1396530:CDS | 30.0% | |
| ATAAAATACAATGGCGTCTT+TGG | + | tig0022040:18071-18090 | None:intergenic | 30.0% | |
| ! | AAGACGCCATTGTATTTTAT+AGG | - | tig0022040:18071-18090 | Msa1396530:CDS | 30.0% |
| !! | TTATTCTTTTGAAGAAGAGG+AGG | - | tig0022040:18192-18211 | Msa1396530:CDS | 30.0% |
| AATAATAATAATGCGCATGG+AGG | - | tig0022040:18319-18338 | Msa1396530:CDS | 30.0% | |
| ATGTCCCTAACCATATTCTT+TGG | + | tig0022040:17535-17554 | None:intergenic | 35.0% | |
| AAAGCCATAGAAACTTTGCA+TGG | - | tig0022040:17618-17637 | Msa1396530:CDS | 35.0% | |
| ACATAGGTTCTTGAACTGTT+TGG | + | tig0022040:17649-17668 | None:intergenic | 35.0% | |
| ! | ATGTGTTATTATTGGGGTGA+AGG | - | tig0022040:17778-17797 | Msa1396530:CDS | 35.0% |
| ! | TGTGTTATTATTGGGGTGAA+GGG | - | tig0022040:17779-17798 | Msa1396530:CDS | 35.0% |
| GAATTAACACCAAGTGATGT+TGG | - | tig0022040:17839-17858 | Msa1396530:CDS | 35.0% | |
| TTGAGTTTACCAACATCACT+TGG | + | tig0022040:17851-17870 | None:intergenic | 35.0% | |
| ! | GTGATGTTGGTAAACTCAAT+AGG | - | tig0022040:17852-17871 | Msa1396530:CDS | 35.0% |
| !!! | AGGTAACTGCATGTTTTTTG+GGG | + | tig0022040:17886-17905 | None:intergenic | 35.0% |
| ! | TGCAGTTACCTATTTTCCTT+TGG | - | tig0022040:17895-17914 | Msa1396530:CDS | 35.0% |
| !!! | ACCTATTTTCCTTTGGTTTG+TGG | - | tig0022040:17902-17921 | Msa1396530:CDS | 35.0% |
| CATATATTGCCACAAACCAA+AGG | + | tig0022040:17914-17933 | None:intergenic | 35.0% | |
| GGAAGTTTCGATATTGCTAT+TGG | - | tig0022040:17978-17997 | Msa1396530:CDS | 35.0% | |
| !! | AAGGTTAGTTTGCAATGAAG+TGG | - | tig0022040:18243-18262 | Msa1396530:CDS | 35.0% |
| ATGTCCCTAACCATATTCTT+TGG | + | tig0022040:17535-17554 | None:intergenic | 35.0% | |
| AAAGCCATAGAAACTTTGCA+TGG | - | tig0022040:17618-17637 | Msa1396530:CDS | 35.0% | |
| ACATAGGTTCTTGAACTGTT+TGG | + | tig0022040:17649-17668 | None:intergenic | 35.0% | |
| ! | ATGTGTTATTATTGGGGTGA+AGG | - | tig0022040:17778-17797 | Msa1396530:CDS | 35.0% |
| ! | TGTGTTATTATTGGGGTGAA+GGG | - | tig0022040:17779-17798 | Msa1396530:CDS | 35.0% |
| GAATTAACACCAAGTGATGT+TGG | - | tig0022040:17839-17858 | Msa1396530:CDS | 35.0% | |
| TTGAGTTTACCAACATCACT+TGG | + | tig0022040:17851-17870 | None:intergenic | 35.0% | |
| ! | GTGATGTTGGTAAACTCAAT+AGG | - | tig0022040:17852-17871 | Msa1396530:CDS | 35.0% |
| !!! | AGGTAACTGCATGTTTTTTG+GGG | + | tig0022040:17886-17905 | None:intergenic | 35.0% |
| ! | TGCAGTTACCTATTTTCCTT+TGG | - | tig0022040:17895-17914 | Msa1396530:CDS | 35.0% |
| !!! | ACCTATTTTCCTTTGGTTTG+TGG | - | tig0022040:17902-17921 | Msa1396530:CDS | 35.0% |
| CATATATTGCCACAAACCAA+AGG | + | tig0022040:17914-17933 | None:intergenic | 35.0% | |
| GGAAGTTTCGATATTGCTAT+TGG | - | tig0022040:17978-17997 | Msa1396530:CDS | 35.0% | |
| !! | AAGGTTAGTTTGCAATGAAG+TGG | - | tig0022040:18243-18262 | Msa1396530:CDS | 35.0% |
| ATTATGGTGCAAAACGTACG+AGG | - | tig0022040:17417-17436 | Msa1396530:CDS | 40.0% | |
| TATGAAGTAGAGGATGTTGC+AGG | - | tig0022040:17440-17459 | Msa1396530:CDS | 40.0% | |
| ATGAAGTAGAGGATGTTGCA+GGG | - | tig0022040:17441-17460 | Msa1396530:CDS | 40.0% | |
| ! | CAGGGTGTCAAAAGTTCAAA+GGG | - | tig0022040:17459-17478 | Msa1396530:CDS | 40.0% |
| ! | AGGGTGTCAAAAGTTCAAAG+GGG | - | tig0022040:17460-17479 | Msa1396530:CDS | 40.0% |
| TGCCTCAACAAAATGGACAT+TGG | - | tig0022040:17486-17505 | Msa1396530:CDS | 40.0% | |
| GCCTCAACAAAATGGACATT+GGG | - | tig0022040:17487-17506 | Msa1396530:CDS | 40.0% | |
| CCTCAACAAAATGGACATTG+GGG | - | tig0022040:17488-17507 | Msa1396530:CDS | 40.0% | |
| GCCACAAACCAAAGGAAAAT+AGG | + | tig0022040:17906-17925 | None:intergenic | 40.0% | |
| ATGACAAACTCATGCGATTG+TGG | - | tig0022040:17957-17976 | Msa1396530:CDS | 40.0% | |
| CTCTAGTGAACACATAGCTT+TGG | + | tig0022040:18012-18031 | None:intergenic | 40.0% | |
| CAAAGCTATGTGTTCACTAG+AGG | - | tig0022040:18010-18029 | Msa1396530:CDS | 40.0% | |
| TGTTCACTAGAGGATGGAAT+CGG | - | tig0022040:18020-18039 | Msa1396530:CDS | 40.0% | |
| !! | TCTTTTGAAGAAGAGGAGGA+TGG | - | tig0022040:18196-18215 | Msa1396530:CDS | 40.0% |
| TGGAGATGCCAAACAAATGT+TGG | - | tig0022040:18216-18235 | Msa1396530:CDS | 40.0% | |
| GGAGATGCCAAACAAATGTT+GGG | - | tig0022040:18217-18236 | Msa1396530:CDS | 40.0% | |
| CCTTCTTCCCAACATTTGTT+TGG | + | tig0022040:18227-18246 | None:intergenic | 40.0% | |
| CCAAACAAATGTTGGGAAGA+AGG | - | tig0022040:18224-18243 | Msa1396530:CDS | 40.0% | |
| ATTATGGTGCAAAACGTACG+AGG | - | tig0022040:17417-17436 | Msa1396530:CDS | 40.0% | |
| TATGAAGTAGAGGATGTTGC+AGG | - | tig0022040:17440-17459 | Msa1396530:CDS | 40.0% | |
| ATGAAGTAGAGGATGTTGCA+GGG | - | tig0022040:17441-17460 | Msa1396530:CDS | 40.0% | |
| ! | CAGGGTGTCAAAAGTTCAAA+GGG | - | tig0022040:17459-17478 | Msa1396530:CDS | 40.0% |
| ! | AGGGTGTCAAAAGTTCAAAG+GGG | - | tig0022040:17460-17479 | Msa1396530:CDS | 40.0% |
| TGCCTCAACAAAATGGACAT+TGG | - | tig0022040:17486-17505 | Msa1396530:CDS | 40.0% | |
| GCCTCAACAAAATGGACATT+GGG | - | tig0022040:17487-17506 | Msa1396530:CDS | 40.0% | |
| CCTCAACAAAATGGACATTG+GGG | - | tig0022040:17488-17507 | Msa1396530:CDS | 40.0% | |
| GCCACAAACCAAAGGAAAAT+AGG | + | tig0022040:17906-17925 | None:intergenic | 40.0% | |
| ATGACAAACTCATGCGATTG+TGG | - | tig0022040:17957-17976 | Msa1396530:CDS | 40.0% | |
| CTCTAGTGAACACATAGCTT+TGG | + | tig0022040:18012-18031 | None:intergenic | 40.0% | |
| CAAAGCTATGTGTTCACTAG+AGG | - | tig0022040:18010-18029 | Msa1396530:CDS | 40.0% | |
| TGTTCACTAGAGGATGGAAT+CGG | - | tig0022040:18020-18039 | Msa1396530:CDS | 40.0% | |
| !! | TCTTTTGAAGAAGAGGAGGA+TGG | - | tig0022040:18196-18215 | Msa1396530:CDS | 40.0% |
| TGGAGATGCCAAACAAATGT+TGG | - | tig0022040:18216-18235 | Msa1396530:CDS | 40.0% | |
| GGAGATGCCAAACAAATGTT+GGG | - | tig0022040:18217-18236 | Msa1396530:CDS | 40.0% | |
| CCTTCTTCCCAACATTTGTT+TGG | + | tig0022040:18227-18246 | None:intergenic | 40.0% | |
| CCAAACAAATGTTGGGAAGA+AGG | - | tig0022040:18224-18243 | Msa1396530:CDS | 40.0% | |
| ACGTACGAGGTATGAAGTAG+AGG | - | tig0022040:17430-17449 | Msa1396530:CDS | 45.0% | |
| ! | GCAGGGTGTCAAAAGTTCAA+AGG | - | tig0022040:17458-17477 | Msa1396530:CDS | 45.0% |
| ! | CCCCAATGTCCATTTTGTTG+AGG | + | tig0022040:17491-17510 | None:intergenic | 45.0% |
| ATCTGAAAGAGATGCTGCCA+TGG | - | tig0022040:17559-17578 | Msa1396530:CDS | 45.0% | |
| AGAAATCAAAGCCAAGGTGC+AGG | - | tig0022040:17749-17768 | Msa1396530:CDS | 45.0% | |
| TATTATTGGGGTGAAGGGTG+AGG | - | tig0022040:17784-17803 | Msa1396530:CDS | 45.0% | |
| GCTATGTGTTCACTAGAGGA+TGG | - | tig0022040:18014-18033 | Msa1396530:CDS | 45.0% | |
| !! | AGGATGGAATCGGTTTGTGA+AGG | - | tig0022040:18030-18049 | Msa1396530:CDS | 45.0% |
| ATAATGCGCATGGAGGCTTA+AGG | - | tig0022040:18326-18345 | Msa1396530:CDS | 45.0% | |
| ACGTACGAGGTATGAAGTAG+AGG | - | tig0022040:17430-17449 | Msa1396530:CDS | 45.0% | |
| ! | GCAGGGTGTCAAAAGTTCAA+AGG | - | tig0022040:17458-17477 | Msa1396530:CDS | 45.0% |
| ! | CCCCAATGTCCATTTTGTTG+AGG | + | tig0022040:17491-17510 | None:intergenic | 45.0% |
| ATCTGAAAGAGATGCTGCCA+TGG | - | tig0022040:17559-17578 | Msa1396530:CDS | 45.0% | |
| AGAAATCAAAGCCAAGGTGC+AGG | - | tig0022040:17749-17768 | Msa1396530:CDS | 45.0% | |
| TATTATTGGGGTGAAGGGTG+AGG | - | tig0022040:17784-17803 | Msa1396530:CDS | 45.0% | |
| GCTATGTGTTCACTAGAGGA+TGG | - | tig0022040:18014-18033 | Msa1396530:CDS | 45.0% | |
| !! | AGGATGGAATCGGTTTGTGA+AGG | - | tig0022040:18030-18049 | Msa1396530:CDS | 45.0% |
| ATAATGCGCATGGAGGCTTA+AGG | - | tig0022040:18326-18345 | Msa1396530:CDS | 45.0% | |
| GGGGTTGTGCCTCAACAAAA+TGG | - | tig0022040:17479-17498 | Msa1396530:CDS | 50.0% | |
| TTCTCCGCTTCTGAGCTTGA+TGG | + | tig0022040:17600-17619 | None:intergenic | 50.0% | |
| CACATTCTTTGCCTGCACCT+TGG | + | tig0022040:17763-17782 | None:intergenic | 50.0% | |
| CATGGAGGCTTAAGGCTCTT+TGG | - | tig0022040:18334-18353 | Msa1396530:CDS | 50.0% | |
| GGGGTTGTGCCTCAACAAAA+TGG | - | tig0022040:17479-17498 | Msa1396530:CDS | 50.0% | |
| TTCTCCGCTTCTGAGCTTGA+TGG | + | tig0022040:17600-17619 | None:intergenic | 50.0% | |
| CACATTCTTTGCCTGCACCT+TGG | + | tig0022040:17763-17782 | None:intergenic | 50.0% | |
| CATGGAGGCTTAAGGCTCTT+TGG | - | tig0022040:18334-18353 | Msa1396530:CDS | 50.0% | |
| GCCACCATCAAGCTCAGAAG+CGG | - | tig0022040:17593-17612 | Msa1396530:CDS | 55.0% | |
| TCCGCTTCTGAGCTTGATGG+TGG | + | tig0022040:17597-17616 | None:intergenic | 55.0% | |
| GCCACCATCAAGCTCAGAAG+CGG | - | tig0022040:17593-17612 | Msa1396530:CDS | 55.0% | |
| TCCGCTTCTGAGCTTGATGG+TGG | + | tig0022040:17597-17616 | None:intergenic | 55.0% | |
| GGTGGCGCTGTCGTAAGCCA+TGG | + | tig0022040:17579-17598 | None:intergenic | 65.0% | |
| GGTGGCGCTGTCGTAAGCCA+TGG | + | tig0022040:17579-17598 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022040 | gene | 17359 | 18372 | 17359 | ID=Msa1396530;Name=Msa1396530 |
| tig0022040 | mRNA | 17359 | 18372 | 17359 | ID=Msa1396530-mRNA-1;Parent=Msa1396530;Name=Msa1396530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|337 |
| tig0022040 | exon | 17359 | 18372 | 17359 | ID=Msa1396530-mRNA-1:exon:15554;Parent=Msa1396530-mRNA-1 |
| tig0022040 | CDS | 17359 | 18372 | 17359 | ID=Msa1396530-mRNA-1:cds;Parent=Msa1396530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
