Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398750 | AET04690.2 | 66.667 | 255 | 28 | 4 | 1 | 247 | 1 | 206 | 1.27e-105 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398750 | sp|A2XE31|ORR21_ORYSI | 32.979 | 282 | 111 | 2 | 13 | 252 | 11 | 256 | 7.95e-41 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398750 | G7LD51 | 66.667 | 255 | 28 | 4 | 1 | 247 | 1 | 206 | 6.06e-106 | 317 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1398750 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398750 | MtrunA17_Chr8g0383961 | 64.314 | 255 | 24 | 4 | 1 | 247 | 1 | 196 | 5.14e-104 | 302 |
| Msa1398750 | MtrunA17_Chr6g0471041 | 50.973 | 257 | 80 | 4 | 1 | 247 | 1 | 221 | 8.80e-78 | 241 |
| Msa1398750 | MtrunA17_Chr4g0009851 | 46.512 | 258 | 87 | 5 | 1 | 247 | 1 | 218 | 1.27e-67 | 211 |
| Msa1398750 | MtrunA17_Chr4g0009901 | 43.411 | 258 | 94 | 5 | 1 | 247 | 1 | 217 | 1.21e-58 | 187 |
| Msa1398750 | MtrunA17_Chr1g0161431 | 38.298 | 282 | 97 | 3 | 12 | 252 | 9 | 254 | 6.17e-56 | 189 |
| Msa1398750 | MtrunA17_Chr8g0391911 | 38.745 | 271 | 104 | 5 | 9 | 248 | 4 | 243 | 2.04e-49 | 163 |
| Msa1398750 | MtrunA17_Chr4g0009981 | 43.781 | 201 | 66 | 3 | 58 | 247 | 1 | 165 | 2.74e-48 | 160 |
| Msa1398750 | MtrunA17_Chr4g0011071 | 51.429 | 140 | 57 | 2 | 61 | 189 | 36 | 175 | 1.96e-43 | 145 |
| Msa1398750 | MtrunA17_Chr2g0294911 | 36.496 | 274 | 104 | 3 | 13 | 252 | 28 | 265 | 5.35e-43 | 154 |
| Msa1398750 | MtrunA17_Chr6g0456631 | 47.134 | 157 | 70 | 4 | 9 | 153 | 4 | 159 | 2.70e-42 | 142 |
| Msa1398750 | MtrunA17_Chr8g0376881 | 34.545 | 275 | 108 | 4 | 14 | 252 | 25 | 263 | 2.32e-41 | 148 |
| Msa1398750 | MtrunA17_Chr4g0067981 | 34.783 | 276 | 108 | 3 | 13 | 252 | 30 | 269 | 3.42e-41 | 149 |
| Msa1398750 | MtrunA17_Chr3g0123131 | 33.213 | 277 | 111 | 4 | 14 | 252 | 13 | 253 | 5.31e-39 | 142 |
| Msa1398750 | MtrunA17_Chr7g0275891 | 30.935 | 278 | 131 | 5 | 13 | 252 | 4 | 258 | 8.07e-33 | 122 |
| Msa1398750 | MtrunA17_Chr3g0134481 | 30.328 | 244 | 110 | 2 | 7 | 250 | 1 | 184 | 2.32e-32 | 117 |
| Msa1398750 | MtrunA17_Chr4g0074411 | 29.740 | 269 | 118 | 3 | 14 | 247 | 18 | 250 | 4.04e-31 | 120 |
| Msa1398750 | MtrunA17_Chr3g0137101 | 30.496 | 282 | 118 | 4 | 13 | 252 | 7 | 252 | 5.65e-31 | 120 |
| Msa1398750 | MtrunA17_Chr4g0074401 | 30.882 | 272 | 114 | 4 | 14 | 247 | 17 | 252 | 7.55e-30 | 117 |
| Msa1398750 | MtrunA17_Chr4g0009991 | 41.290 | 155 | 45 | 3 | 106 | 250 | 1 | 119 | 1.33e-29 | 107 |
| Msa1398750 | MtrunA17_Chr1g0149851 | 30.576 | 278 | 134 | 5 | 13 | 252 | 4 | 260 | 2.03e-29 | 115 |
| Msa1398750 | MtrunA17_Chr1g0149841 | 29.856 | 278 | 121 | 3 | 13 | 252 | 4 | 245 | 2.13e-29 | 115 |
| Msa1398750 | MtrunA17_Chr2g0304841 | 27.891 | 294 | 129 | 4 | 6 | 252 | 10 | 267 | 2.30e-28 | 113 |
| Msa1398750 | MtrunA17_Chr3g0134461 | 30.544 | 239 | 115 | 4 | 13 | 250 | 7 | 195 | 4.12e-27 | 103 |
| Msa1398750 | MtrunA17_Chr7g0275401 | 27.737 | 274 | 123 | 4 | 13 | 247 | 4 | 241 | 2.44e-26 | 103 |
| Msa1398750 | MtrunA17_Chr4g0074421 | 29.864 | 221 | 86 | 3 | 65 | 252 | 3 | 187 | 6.87e-25 | 97.8 |
| Msa1398750 | MtrunA17_Chr5g0423031 | 54.255 | 94 | 38 | 2 | 1 | 94 | 1 | 89 | 6.21e-24 | 95.1 |
| Msa1398750 | MtrunA17_Chr4g0010001 | 55.556 | 81 | 35 | 1 | 14 | 94 | 10 | 89 | 4.07e-22 | 87.4 |
| Msa1398750 | MtrunA17_Chr7g0223971 | 33.708 | 178 | 85 | 7 | 96 | 247 | 1 | 171 | 1.47e-17 | 81.6 |
| Msa1398750 | MtrunA17_Chr8g0350761 | 25.957 | 235 | 117 | 5 | 18 | 195 | 21 | 255 | 7.76e-15 | 73.6 |
| Msa1398750 | MtrunA17_Chr1g0181811 | 31.707 | 123 | 79 | 2 | 18 | 136 | 85 | 206 | 7.34e-13 | 67.8 |
| Msa1398750 | MtrunA17_Chr8g0345901 | 31.452 | 124 | 82 | 1 | 16 | 136 | 34 | 157 | 2.02e-12 | 66.6 |
| Msa1398750 | MtrunA17_Chr4g0030271 | 34.146 | 123 | 76 | 2 | 18 | 136 | 89 | 210 | 2.06e-12 | 66.6 |
| Msa1398750 | MtrunA17_Chr3g0127941 | 30.328 | 122 | 82 | 1 | 18 | 136 | 56 | 177 | 4.04e-12 | 65.9 |
| Msa1398750 | MtrunA17_Chr7g0276361 | 30.400 | 125 | 84 | 1 | 15 | 136 | 11 | 135 | 4.56e-12 | 65.5 |
| Msa1398750 | MtrunA17_Chr5g0400241 | 29.197 | 137 | 90 | 4 | 5 | 139 | 6 | 137 | 1.27e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398750 | AT2G01760.1 | 32.982 | 285 | 110 | 3 | 13 | 252 | 6 | 254 | 4.56e-41 | 145 |
| Msa1398750 | AT2G01760.2 | 30.032 | 313 | 110 | 4 | 13 | 252 | 6 | 282 | 8.73e-36 | 131 |
| Msa1398750 | AT1G67710.1 | 33.696 | 276 | 110 | 5 | 15 | 252 | 8 | 248 | 2.28e-35 | 132 |
| Msa1398750 | AT3G16857.1 | 30.565 | 301 | 117 | 3 | 8 | 252 | 27 | 291 | 8.56e-35 | 132 |
| Msa1398750 | AT3G16857.2 | 30.565 | 301 | 117 | 3 | 8 | 252 | 27 | 291 | 9.33e-35 | 132 |
| Msa1398750 | AT2G25180.1 | 31.469 | 286 | 125 | 5 | 1 | 252 | 1 | 249 | 2.96e-33 | 127 |
| Msa1398750 | AT4G31920.1 | 32.721 | 272 | 118 | 6 | 1 | 247 | 1 | 232 | 1.79e-30 | 119 |
| Msa1398750 | AT3G16857.3 | 28.794 | 257 | 91 | 3 | 52 | 252 | 1 | 221 | 1.23e-25 | 105 |
| Msa1398750 | AT2G01760.3 | 29.778 | 225 | 77 | 3 | 73 | 252 | 1 | 189 | 6.02e-24 | 98.2 |
| Msa1398750 | AT5G58080.1 | 26.374 | 273 | 131 | 4 | 13 | 252 | 13 | 248 | 2.36e-23 | 99.0 |
| Msa1398750 | AT1G49190.1 | 26.502 | 283 | 133 | 5 | 5 | 247 | 21 | 268 | 3.99e-22 | 94.7 |
| Msa1398750 | AT1G67710.2 | 31.651 | 218 | 76 | 5 | 73 | 252 | 1 | 183 | 7.75e-22 | 94.0 |
| Msa1398750 | AT5G49240.1 | 25.342 | 292 | 133 | 4 | 3 | 251 | 27 | 276 | 7.01e-21 | 89.7 |
| Msa1398750 | AT3G62670.1 | 27.237 | 257 | 126 | 5 | 19 | 247 | 42 | 265 | 1.31e-20 | 90.5 |
| Msa1398750 | AT1G49190.2 | 35.878 | 131 | 84 | 0 | 6 | 136 | 22 | 152 | 1.97e-20 | 90.5 |
| Msa1398750 | AT5G60100.2 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 2.61e-15 | 75.5 |
| Msa1398750 | AT5G60100.7 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 4.79e-15 | 74.3 |
| Msa1398750 | AT5G60100.6 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 4.79e-15 | 74.3 |
| Msa1398750 | AT5G60100.4 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 4.79e-15 | 74.3 |
| Msa1398750 | AT5G60100.5 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 6.73e-15 | 74.3 |
| Msa1398750 | AT5G60100.3 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 6.73e-15 | 74.3 |
| Msa1398750 | AT5G60100.1 | 33.607 | 122 | 78 | 1 | 18 | 136 | 64 | 185 | 6.73e-15 | 74.3 |
| Msa1398750 | AT2G46790.1 | 32.520 | 123 | 80 | 1 | 18 | 137 | 37 | 159 | 1.48e-13 | 70.1 |
| Msa1398750 | AT2G46790.3 | 32.520 | 123 | 80 | 1 | 18 | 137 | 37 | 159 | 1.63e-13 | 70.1 |
| Msa1398750 | AT5G24470.1 | 31.148 | 122 | 81 | 1 | 18 | 136 | 50 | 171 | 2.36e-13 | 69.7 |
Find 42 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTTGATTCTCGATTAA+AGG | 0.164354 | tig0022299:+25444 | None:intergenic |
| AATTGCATCGACAATTTCTA+AGG | 0.211162 | tig0022299:-25293 | Msa1398750:CDS |
| TGTTTCCATCAAAAGTTTAA+AGG | 0.235719 | tig0022299:+25761 | None:intergenic |
| CAAACGGGGCTTGCGAATAT+TGG | 0.275266 | tig0022299:-25473 | Msa1398750:CDS |
| TCCAGTTACAACATGTTCTA+AGG | 0.282036 | tig0022299:-25793 | Msa1398750:intron |
| ATCGCTTTATGAATTGCTTT+TGG | 0.284723 | tig0022299:+25129 | None:intergenic |
| ACATTTCCACAACAGCATTA+AGG | 0.328612 | tig0022299:+25966 | None:intergenic |
| AGAAATTGTCGATGCAATTC+AGG | 0.341097 | tig0022299:+25297 | None:intergenic |
| CTCTTAAATCCTCTGGGAAT+TGG | 0.352622 | tig0022299:+26017 | None:intergenic |
| GCAAGTTGCTAGCCATTTGC+AGG | 0.355161 | tig0022299:-25082 | Msa1398750:CDS |
| CTAAGGGTTGTGAATGAACT+TGG | 0.358456 | tig0022299:-25276 | Msa1398750:CDS |
| CATAAAGCGATGAATGTTCC+TGG | 0.373937 | tig0022299:-25117 | Msa1398750:CDS |
| ATATACGATTCTTCTTCGTT+AGG | 0.374538 | tig0022299:+25328 | None:intergenic |
| TATACGATTCTTCTTCGTTA+GGG | 0.386785 | tig0022299:+25329 | None:intergenic |
| ACAAGAACTCTTAAATCCTC+TGG | 0.429240 | tig0022299:+26010 | None:intergenic |
| AACAAACCTTGATAATTGCT+TGG | 0.435234 | tig0022299:+25938 | None:intergenic |
| TGACAGGAATATTGATTTGT+TGG | 0.454324 | tig0022299:+25661 | None:intergenic |
| TAAATCCTCTGGGAATTGGC+TGG | 0.455635 | tig0022299:+26021 | None:intergenic |
| TGATGAAAGCTGTTGCAAAC+GGG | 0.461960 | tig0022299:-25488 | Msa1398750:CDS |
| ATAAACATAATCAAAGCAAA+AGG | 0.469172 | tig0022299:-25380 | Msa1398750:CDS |
| TCTATTCCAAGCAATTATCA+AGG | 0.472629 | tig0022299:-25944 | Msa1398750:intron |
| AAATCATATGAATCCATGTC+TGG | 0.476246 | tig0022299:+25699 | None:intergenic |
| TAAACATAATCAAAGCAAAA+GGG | 0.478480 | tig0022299:-25379 | Msa1398750:CDS |
| GTGATGAAAGCTGTTGCAAA+CGG | 0.482441 | tig0022299:-25489 | Msa1398750:CDS |
| TATATATTCTTACTGATGAC+AGG | 0.490720 | tig0022299:+25645 | None:intergenic |
| GACAGGAATATTGATTTGTT+GGG | 0.492437 | tig0022299:+25662 | None:intergenic |
| CGAAGAAGAATCGTATATCA+TGG | 0.494656 | tig0022299:-25323 | Msa1398750:CDS |
| TGATTTGTTGGGTAACATGT+CGG | 0.535639 | tig0022299:+25673 | None:intergenic |
| AGAGGATTTAAGAGTTCTTG+TGG | 0.539349 | tig0022299:-26008 | Msa1398750:CDS |
| CAAGAACTCTTAAATCCTCT+GGG | 0.542866 | tig0022299:+26011 | None:intergenic |
| TGAAGCTCAAATGCCAGACA+TGG | 0.549847 | tig0022299:-25712 | Msa1398750:CDS |
| TGTGCAGTGATGTGTGATGA+TGG | 0.552839 | tig0022299:-25525 | Msa1398750:intron |
| AAATCCTCTGGGAATTGGCT+GGG | 0.555538 | tig0022299:+26022 | None:intergenic |
| TGATGTCCTTAATGCTGTTG+TGG | 0.557832 | tig0022299:-25972 | Msa1398750:CDS |
| ATACGATTCTTCTTCGTTAG+GGG | 0.588904 | tig0022299:+25330 | None:intergenic |
| ATTGCATCGACAATTTCTAA+GGG | 0.597352 | tig0022299:-25292 | Msa1398750:CDS |
| AGAATCAAATCAAGAACATG+TGG | 0.615053 | tig0022299:-25434 | Msa1398750:CDS |
| GATGAAAGCTGTTGCAAACG+GGG | 0.621578 | tig0022299:-25487 | Msa1398750:CDS |
| AAACATAATCAAAGCAAAAG+GGG | 0.630491 | tig0022299:-25378 | Msa1398750:CDS |
| AACAAAGGGCTGTGTTGATG+TGG | 0.643059 | tig0022299:-25742 | Msa1398750:CDS |
| ACATGTGGCAGTGTGTTGCA+AGG | 0.672995 | tig0022299:-25419 | Msa1398750:CDS |
| ACTTCCCAGCCAATTCCCAG+AGG | 0.715638 | tig0022299:-26026 | Msa1398750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAGAAAATAAAAATTAT+TGG | + | tig0022299:25889-25908 | None:intergenic | 15.0% |
| !! | AGAGAGAAAATAAAAATTAT+TGG | + | tig0022299:25889-25908 | None:intergenic | 15.0% |
| !! | ATAAACATAATCAAAGCAAA+AGG | - | tig0022299:25737-25756 | Msa1398750:CDS | 20.0% |
| !! | TAAACATAATCAAAGCAAAA+GGG | - | tig0022299:25738-25757 | Msa1398750:CDS | 20.0% |
| !! | ATAAACATAATCAAAGCAAA+AGG | - | tig0022299:25737-25756 | Msa1398750:CDS | 20.0% |
| !! | TAAACATAATCAAAGCAAAA+GGG | - | tig0022299:25738-25757 | Msa1398750:CDS | 20.0% |
| !! | TTTTGCCTTTAAACTTTTGA+TGG | - | tig0022299:25351-25370 | Msa1398750:CDS | 25.0% |
| ! | TGTTTCCATCAAAAGTTTAA+AGG | + | tig0022299:25359-25378 | None:intergenic | 25.0% |
| !! | TAAACTTTTGATGGAAACAA+AGG | - | tig0022299:25360-25379 | Msa1398750:CDS | 25.0% |
| !! | AAACTTTTGATGGAAACAAA+GGG | - | tig0022299:25361-25380 | Msa1398750:CDS | 25.0% |
| ! | TATATATTCTTACTGATGAC+AGG | + | tig0022299:25475-25494 | None:intergenic | 25.0% |
| !! | TTGATTTGATTCTCGATTAA+AGG | + | tig0022299:25676-25695 | None:intergenic | 25.0% |
| ! | AAACATAATCAAAGCAAAAG+GGG | - | tig0022299:25739-25758 | Msa1398750:CDS | 25.0% |
| ! | GAAAAAGAATCTTACTATCA+AGG | + | tig0022299:25867-25886 | None:intergenic | 25.0% |
| !! | TTTTGCCTTTAAACTTTTGA+TGG | - | tig0022299:25351-25370 | Msa1398750:CDS | 25.0% |
| ! | TGTTTCCATCAAAAGTTTAA+AGG | + | tig0022299:25359-25378 | None:intergenic | 25.0% |
| !! | TAAACTTTTGATGGAAACAA+AGG | - | tig0022299:25360-25379 | Msa1398750:CDS | 25.0% |
| !! | AAACTTTTGATGGAAACAAA+GGG | - | tig0022299:25361-25380 | Msa1398750:CDS | 25.0% |
| ! | TATATATTCTTACTGATGAC+AGG | + | tig0022299:25475-25494 | None:intergenic | 25.0% |
| !! | TTGATTTGATTCTCGATTAA+AGG | + | tig0022299:25676-25695 | None:intergenic | 25.0% |
| ! | AAACATAATCAAAGCAAAAG+GGG | - | tig0022299:25739-25758 | Msa1398750:CDS | 25.0% |
| ! | GAAAAAGAATCTTACTATCA+AGG | + | tig0022299:25867-25886 | None:intergenic | 25.0% |
| TCTATTCCAAGCAATTATCA+AGG | - | tig0022299:25173-25192 | Msa1398750:CDS | 30.0% | |
| ! | AACAAACCTTGATAATTGCT+TGG | + | tig0022299:25182-25201 | None:intergenic | 30.0% |
| CAAAAGTTCAAGAATTTCAC+AGG | + | tig0022299:25258-25277 | None:intergenic | 30.0% | |
| ! | CTGTGAAATTCTTGAACTTT+TGG | - | tig0022299:25256-25275 | Msa1398750:CDS | 30.0% |
| AAATCATATGAATCCATGTC+TGG | + | tig0022299:25421-25440 | None:intergenic | 30.0% | |
| !! | GACAGGAATATTGATTTGTT+GGG | + | tig0022299:25458-25477 | None:intergenic | 30.0% |
| !! | TGACAGGAATATTGATTTGT+TGG | + | tig0022299:25459-25478 | None:intergenic | 30.0% |
| AGAATCAAATCAAGAACATG+TGG | - | tig0022299:25683-25702 | Msa1398750:CDS | 30.0% | |
| TATACGATTCTTCTTCGTTA+GGG | + | tig0022299:25791-25810 | None:intergenic | 30.0% | |
| ATATACGATTCTTCTTCGTT+AGG | + | tig0022299:25792-25811 | None:intergenic | 30.0% | |
| ! | AATTGCATCGACAATTTCTA+AGG | - | tig0022299:25824-25843 | Msa1398750:intron | 30.0% |
| ! | ATTGCATCGACAATTTCTAA+GGG | - | tig0022299:25825-25844 | Msa1398750:intron | 30.0% |
| ! | ATCGCTTTATGAATTGCTTT+TGG | + | tig0022299:25991-26010 | None:intergenic | 30.0% |
| ACAAAAAACAAACCTGCAAA+TGG | + | tig0022299:26050-26069 | None:intergenic | 30.0% | |
| TCTATTCCAAGCAATTATCA+AGG | - | tig0022299:25173-25192 | Msa1398750:CDS | 30.0% | |
| ! | AACAAACCTTGATAATTGCT+TGG | + | tig0022299:25182-25201 | None:intergenic | 30.0% |
| CAAAAGTTCAAGAATTTCAC+AGG | + | tig0022299:25258-25277 | None:intergenic | 30.0% | |
| ! | CTGTGAAATTCTTGAACTTT+TGG | - | tig0022299:25256-25275 | Msa1398750:CDS | 30.0% |
| AAATCATATGAATCCATGTC+TGG | + | tig0022299:25421-25440 | None:intergenic | 30.0% | |
| !! | GACAGGAATATTGATTTGTT+GGG | + | tig0022299:25458-25477 | None:intergenic | 30.0% |
| !! | TGACAGGAATATTGATTTGT+TGG | + | tig0022299:25459-25478 | None:intergenic | 30.0% |
| AGAATCAAATCAAGAACATG+TGG | - | tig0022299:25683-25702 | Msa1398750:CDS | 30.0% | |
| TATACGATTCTTCTTCGTTA+GGG | + | tig0022299:25791-25810 | None:intergenic | 30.0% | |
| ATATACGATTCTTCTTCGTT+AGG | + | tig0022299:25792-25811 | None:intergenic | 30.0% | |
| ! | AATTGCATCGACAATTTCTA+AGG | - | tig0022299:25824-25843 | Msa1398750:intron | 30.0% |
| ! | ATTGCATCGACAATTTCTAA+GGG | - | tig0022299:25825-25844 | Msa1398750:intron | 30.0% |
| ! | ATCGCTTTATGAATTGCTTT+TGG | + | tig0022299:25991-26010 | None:intergenic | 30.0% |
| ACAAAAAACAAACCTGCAAA+TGG | + | tig0022299:26050-26069 | None:intergenic | 30.0% | |
| CAAGAACTCTTAAATCCTCT+GGG | + | tig0022299:25109-25128 | None:intergenic | 35.0% | |
| ACAAGAACTCTTAAATCCTC+TGG | + | tig0022299:25110-25129 | None:intergenic | 35.0% | |
| AGAGGATTTAAGAGTTCTTG+TGG | - | tig0022299:25109-25128 | Msa1398750:CDS | 35.0% | |
| ACATTTCCACAACAGCATTA+AGG | + | tig0022299:25154-25173 | None:intergenic | 35.0% | |
| TAGAACATGTTGTAACTGGA+AGG | + | tig0022299:25324-25343 | None:intergenic | 35.0% | |
| TCCAGTTACAACATGTTCTA+AGG | - | tig0022299:25324-25343 | Msa1398750:CDS | 35.0% | |
| !! | TGATTTGTTGGGTAACATGT+CGG | + | tig0022299:25447-25466 | None:intergenic | 35.0% |
| ATACGATTCTTCTTCGTTAG+GGG | + | tig0022299:25790-25809 | None:intergenic | 35.0% | |
| CGAAGAAGAATCGTATATCA+TGG | - | tig0022299:25794-25813 | Msa1398750:intron | 35.0% | |
| AGAAATTGTCGATGCAATTC+AGG | + | tig0022299:25823-25842 | None:intergenic | 35.0% | |
| GGAGAGACAAAAATTTACAC+AGG | + | tig0022299:25948-25967 | None:intergenic | 35.0% | |
| ! | GCTTTGCCTCTGAAAAATAA+GGG | + | tig0022299:25969-25988 | None:intergenic | 35.0% |
| CAAGAACTCTTAAATCCTCT+GGG | + | tig0022299:25109-25128 | None:intergenic | 35.0% | |
| ACAAGAACTCTTAAATCCTC+TGG | + | tig0022299:25110-25129 | None:intergenic | 35.0% | |
| AGAGGATTTAAGAGTTCTTG+TGG | - | tig0022299:25109-25128 | Msa1398750:CDS | 35.0% | |
| ACATTTCCACAACAGCATTA+AGG | + | tig0022299:25154-25173 | None:intergenic | 35.0% | |
| TAGAACATGTTGTAACTGGA+AGG | + | tig0022299:25324-25343 | None:intergenic | 35.0% | |
| TCCAGTTACAACATGTTCTA+AGG | - | tig0022299:25324-25343 | Msa1398750:CDS | 35.0% | |
| !! | TGATTTGTTGGGTAACATGT+CGG | + | tig0022299:25447-25466 | None:intergenic | 35.0% |
| ATACGATTCTTCTTCGTTAG+GGG | + | tig0022299:25790-25809 | None:intergenic | 35.0% | |
| CGAAGAAGAATCGTATATCA+TGG | - | tig0022299:25794-25813 | Msa1398750:intron | 35.0% | |
| AGAAATTGTCGATGCAATTC+AGG | + | tig0022299:25823-25842 | None:intergenic | 35.0% | |
| GGAGAGACAAAAATTTACAC+AGG | + | tig0022299:25948-25967 | None:intergenic | 35.0% | |
| ! | GCTTTGCCTCTGAAAAATAA+GGG | + | tig0022299:25969-25988 | None:intergenic | 35.0% |
| ! | CTCTTAAATCCTCTGGGAAT+TGG | + | tig0022299:25103-25122 | None:intergenic | 40.0% |
| TGATGTCCTTAATGCTGTTG+TGG | - | tig0022299:25145-25164 | Msa1398750:CDS | 40.0% | |
| GCCTTAGAACATGTTGTAAC+TGG | + | tig0022299:25328-25347 | None:intergenic | 40.0% | |
| GTGATGAAAGCTGTTGCAAA+CGG | - | tig0022299:25628-25647 | Msa1398750:intron | 40.0% | |
| TGATGAAAGCTGTTGCAAAC+GGG | - | tig0022299:25629-25648 | Msa1398750:intron | 40.0% | |
| CTAAGGGTTGTGAATGAACT+TGG | - | tig0022299:25841-25860 | Msa1398750:intron | 40.0% | |
| !!! | GTCTCTCCCTTATTTTTCAG+AGG | - | tig0022299:25960-25979 | Msa1398750:CDS | 40.0% |
| ! | GGCTTTGCCTCTGAAAAATA+AGG | + | tig0022299:25970-25989 | None:intergenic | 40.0% |
| CATAAAGCGATGAATGTTCC+TGG | - | tig0022299:26000-26019 | Msa1398750:CDS | 40.0% | |
| ! | ACTTGCTCTTTTGTCAAACC+AGG | + | tig0022299:26021-26040 | None:intergenic | 40.0% |
| ! | CTCTTAAATCCTCTGGGAAT+TGG | + | tig0022299:25103-25122 | None:intergenic | 40.0% |
| TGATGTCCTTAATGCTGTTG+TGG | - | tig0022299:25145-25164 | Msa1398750:CDS | 40.0% | |
| GCCTTAGAACATGTTGTAAC+TGG | + | tig0022299:25328-25347 | None:intergenic | 40.0% | |
| GTGATGAAAGCTGTTGCAAA+CGG | - | tig0022299:25628-25647 | Msa1398750:intron | 40.0% | |
| TGATGAAAGCTGTTGCAAAC+GGG | - | tig0022299:25629-25648 | Msa1398750:intron | 40.0% | |
| CTAAGGGTTGTGAATGAACT+TGG | - | tig0022299:25841-25860 | Msa1398750:intron | 40.0% | |
| !!! | GTCTCTCCCTTATTTTTCAG+AGG | - | tig0022299:25960-25979 | Msa1398750:CDS | 40.0% |
| ! | GGCTTTGCCTCTGAAAAATA+AGG | + | tig0022299:25970-25989 | None:intergenic | 40.0% |
| CATAAAGCGATGAATGTTCC+TGG | - | tig0022299:26000-26019 | Msa1398750:CDS | 40.0% | |
| ! | ACTTGCTCTTTTGTCAAACC+AGG | + | tig0022299:26021-26040 | None:intergenic | 40.0% |
| ! | AAATCCTCTGGGAATTGGCT+GGG | + | tig0022299:25098-25117 | None:intergenic | 45.0% |
| ! | TAAATCCTCTGGGAATTGGC+TGG | + | tig0022299:25099-25118 | None:intergenic | 45.0% |
| ! | AACAAAGGGCTGTGTTGATG+TGG | - | tig0022299:25375-25394 | Msa1398750:CDS | 45.0% |
| TGAAGCTCAAATGCCAGACA+TGG | - | tig0022299:25405-25424 | Msa1398750:CDS | 45.0% | |
| TGTGCAGTGATGTGTGATGA+TGG | - | tig0022299:25592-25611 | Msa1398750:intron | 45.0% | |
| GATGAAAGCTGTTGCAAACG+GGG | - | tig0022299:25630-25649 | Msa1398750:intron | 45.0% | |
| ! | AAATCCTCTGGGAATTGGCT+GGG | + | tig0022299:25098-25117 | None:intergenic | 45.0% |
| ! | TAAATCCTCTGGGAATTGGC+TGG | + | tig0022299:25099-25118 | None:intergenic | 45.0% |
| ! | AACAAAGGGCTGTGTTGATG+TGG | - | tig0022299:25375-25394 | Msa1398750:CDS | 45.0% |
| TGAAGCTCAAATGCCAGACA+TGG | - | tig0022299:25405-25424 | Msa1398750:CDS | 45.0% | |
| TGTGCAGTGATGTGTGATGA+TGG | - | tig0022299:25592-25611 | Msa1398750:intron | 45.0% | |
| GATGAAAGCTGTTGCAAACG+GGG | - | tig0022299:25630-25649 | Msa1398750:intron | 45.0% | |
| CAAACGGGGCTTGCGAATAT+TGG | - | tig0022299:25644-25663 | Msa1398750:intron | 50.0% | |
| ACATGTGGCAGTGTGTTGCA+AGG | - | tig0022299:25698-25717 | Msa1398750:CDS | 50.0% | |
| GCAAGTTGCTAGCCATTTGC+AGG | - | tig0022299:26035-26054 | Msa1398750:CDS | 50.0% | |
| CAAACGGGGCTTGCGAATAT+TGG | - | tig0022299:25644-25663 | Msa1398750:intron | 50.0% | |
| ACATGTGGCAGTGTGTTGCA+AGG | - | tig0022299:25698-25717 | Msa1398750:CDS | 50.0% | |
| GCAAGTTGCTAGCCATTTGC+AGG | - | tig0022299:26035-26054 | Msa1398750:CDS | 50.0% | |
| ACTTCCCAGCCAATTCCCAG+AGG | - | tig0022299:25091-25110 | Msa1398750:CDS | 55.0% | |
| ACTTCCCAGCCAATTCCCAG+AGG | - | tig0022299:25091-25110 | Msa1398750:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022299 | gene | 25065 | 26074 | 25065 | ID=Msa1398750;Name=Msa1398750 |
| tig0022299 | mRNA | 25065 | 26074 | 25065 | ID=Msa1398750-mRNA-1;Parent=Msa1398750;Name=Msa1398750-mRNA-1;_AED=0.19;_eAED=0.32;_QI=0|0|0|1|1|1|3|0|252 |
| tig0022299 | exon | 25945 | 26074 | 25945 | ID=Msa1398750-mRNA-1:exon:16826;Parent=Msa1398750-mRNA-1 |
| tig0022299 | exon | 25658 | 25810 | 25658 | ID=Msa1398750-mRNA-1:exon:16825;Parent=Msa1398750-mRNA-1 |
| tig0022299 | exon | 25065 | 25540 | 25065 | ID=Msa1398750-mRNA-1:exon:16824;Parent=Msa1398750-mRNA-1 |
| tig0022299 | CDS | 25945 | 26074 | 25945 | ID=Msa1398750-mRNA-1:cds;Parent=Msa1398750-mRNA-1 |
| tig0022299 | CDS | 25658 | 25810 | 25658 | ID=Msa1398750-mRNA-1:cds;Parent=Msa1398750-mRNA-1 |
| tig0022299 | CDS | 25065 | 25540 | 25065 | ID=Msa1398750-mRNA-1:cds;Parent=Msa1398750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
