Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399000 | KEH39871.1 | 90.019 | 531 | 38 | 4 | 1 | 517 | 152 | 681 | 0.0 | 933 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399000 | sp|A2X1N2|ORR24_ORYSI | 48.640 | 331 | 125 | 9 | 3 | 305 | 23 | 336 | 1.84e-88 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399000 | A0A072VE88 | 90.019 | 531 | 38 | 4 | 1 | 517 | 152 | 681 | 0.0 | 933 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1399000 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399000 | MtrunA17_Chr1g0149851 | 87.030 | 532 | 33 | 4 | 1 | 500 | 1 | 528 | 0.0 | 894 |
| Msa1399000 | MtrunA17_Chr1g0149841 | 61.111 | 522 | 110 | 15 | 1 | 455 | 1 | 496 | 0.0 | 519 |
| Msa1399000 | MtrunA17_Chr7g0275891 | 64.451 | 346 | 81 | 5 | 1 | 320 | 1 | 330 | 5.59e-138 | 402 |
| Msa1399000 | MtrunA17_Chr3g0137101 | 48.848 | 434 | 164 | 14 | 3 | 401 | 6 | 416 | 2.33e-111 | 344 |
| Msa1399000 | MtrunA17_Chr7g0275401 | 59.554 | 314 | 103 | 4 | 1 | 313 | 1 | 291 | 4.10e-105 | 316 |
| Msa1399000 | MtrunA17_Chr1g0149831 | 75.393 | 191 | 33 | 3 | 64 | 243 | 1 | 188 | 6.62e-80 | 249 |
| Msa1399000 | MtrunA17_Chr2g0304841 | 46.667 | 345 | 145 | 9 | 3 | 313 | 16 | 355 | 7.76e-77 | 255 |
| Msa1399000 | MtrunA17_Chr4g0067981 | 50.593 | 253 | 111 | 5 | 2 | 242 | 28 | 278 | 1.35e-68 | 233 |
| Msa1399000 | MtrunA17_Chr2g0294911 | 48.837 | 258 | 116 | 4 | 1 | 246 | 25 | 278 | 4.29e-66 | 224 |
| Msa1399000 | MtrunA17_Chr3g0123131 | 47.581 | 248 | 110 | 3 | 5 | 236 | 13 | 256 | 1.39e-64 | 219 |
| Msa1399000 | MtrunA17_Chr8g0376881 | 48.790 | 248 | 109 | 5 | 3 | 236 | 23 | 266 | 3.83e-64 | 218 |
| Msa1399000 | MtrunA17_Chr1g0161431 | 46.154 | 260 | 111 | 6 | 4 | 241 | 10 | 262 | 4.99e-64 | 219 |
| Msa1399000 | MtrunA17_Chr4g0074411 | 43.974 | 307 | 150 | 8 | 5 | 298 | 18 | 315 | 8.67e-63 | 216 |
| Msa1399000 | MtrunA17_Chr4g0074401 | 41.718 | 326 | 160 | 8 | 3 | 310 | 15 | 328 | 9.55e-61 | 210 |
| Msa1399000 | MtrunA17_Chr3g0134481 | 66.667 | 129 | 43 | 0 | 2 | 130 | 5 | 133 | 6.94e-51 | 172 |
| Msa1399000 | MtrunA17_Chr3g0134461 | 47.442 | 215 | 60 | 2 | 2 | 215 | 5 | 167 | 1.83e-48 | 166 |
| Msa1399000 | MtrunA17_Chr4g0074421 | 49.375 | 160 | 76 | 2 | 55 | 214 | 2 | 156 | 2.36e-42 | 149 |
| Msa1399000 | MtrunA17_Chr4g0009901 | 33.200 | 250 | 127 | 5 | 2 | 239 | 7 | 228 | 9.79e-36 | 134 |
| Msa1399000 | MtrunA17_Chr4g0009851 | 32.510 | 243 | 124 | 6 | 5 | 235 | 11 | 225 | 1.44e-33 | 129 |
| Msa1399000 | MtrunA17_Chr8g0391911 | 33.023 | 215 | 120 | 7 | 5 | 211 | 9 | 207 | 3.27e-23 | 99.0 |
| Msa1399000 | MtrunA17_Chr7g0275881 | 42.754 | 138 | 39 | 4 | 366 | 503 | 1 | 98 | 4.84e-23 | 94.4 |
| Msa1399000 | MtrunA17_Chr4g0009981 | 32.727 | 165 | 84 | 3 | 50 | 214 | 2 | 139 | 2.51e-22 | 96.7 |
| Msa1399000 | MtrunA17_Chr3g0127941 | 34.532 | 139 | 86 | 2 | 9 | 143 | 56 | 193 | 3.91e-22 | 100 |
| Msa1399000 | MtrunA17_Chr6g0456631 | 35.433 | 127 | 79 | 2 | 3 | 127 | 7 | 132 | 1.67e-21 | 91.7 |
| Msa1399000 | MtrunA17_Chr7g0276361 | 29.515 | 227 | 134 | 5 | 2 | 220 | 5 | 213 | 4.41e-21 | 96.7 |
| Msa1399000 | MtrunA17_Chr6g0471041 | 28.372 | 215 | 124 | 3 | 4 | 217 | 13 | 198 | 4.89e-21 | 95.5 |
| Msa1399000 | MtrunA17_Chr8g0350761 | 29.075 | 227 | 138 | 4 | 8 | 214 | 20 | 243 | 3.24e-20 | 93.6 |
| Msa1399000 | MtrunA17_Chr4g0011071 | 30.120 | 166 | 89 | 3 | 51 | 216 | 35 | 173 | 4.05e-20 | 87.8 |
| Msa1399000 | MtrunA17_Chr8g0345901 | 34.965 | 143 | 82 | 2 | 11 | 142 | 38 | 180 | 4.78e-19 | 90.5 |
| Msa1399000 | MtrunA17_Chr8g0383961 | 34.677 | 124 | 81 | 0 | 4 | 127 | 13 | 136 | 5.45e-19 | 87.0 |
| Msa1399000 | MtrunA17_Chr1g0181811 | 35.246 | 122 | 76 | 2 | 9 | 127 | 85 | 206 | 6.33e-18 | 87.4 |
| Msa1399000 | MtrunA17_Chr3g0091641 | 33.871 | 124 | 79 | 1 | 9 | 129 | 24 | 147 | 6.40e-18 | 87.0 |
| Msa1399000 | MtrunA17_Chr4g0030271 | 35.246 | 122 | 76 | 1 | 9 | 127 | 89 | 210 | 2.59e-17 | 85.5 |
| Msa1399000 | MtrunA17_Chr4g0061021 | 32.258 | 124 | 81 | 1 | 9 | 129 | 33 | 156 | 1.66e-16 | 82.4 |
| Msa1399000 | MtrunA17_Chr5g0423031 | 39.806 | 103 | 56 | 3 | 2 | 103 | 7 | 104 | 3.30e-16 | 77.0 |
| Msa1399000 | MtrunA17_Chr4g0010001 | 39.286 | 84 | 50 | 1 | 2 | 85 | 7 | 89 | 1.89e-12 | 63.2 |
| Msa1399000 | MtrunA17_Chr7g0256551 | 32.374 | 139 | 73 | 3 | 11 | 128 | 11 | 149 | 3.65e-12 | 66.2 |
| Msa1399000 | MtrunA17_Chr4g0059571 | 32.308 | 130 | 76 | 2 | 9 | 126 | 26 | 155 | 4.46e-12 | 65.5 |
| Msa1399000 | MtrunA17_Chr8g0352871 | 31.159 | 138 | 75 | 3 | 11 | 128 | 11 | 148 | 4.75e-12 | 64.7 |
| Msa1399000 | MtrunA17_Chr4g0009991 | 32.231 | 121 | 54 | 3 | 97 | 217 | 1 | 93 | 7.80e-12 | 62.8 |
| Msa1399000 | MtrunA17_Chr5g0400241 | 33.835 | 133 | 84 | 2 | 5 | 136 | 14 | 143 | 1.25e-11 | 67.0 |
| Msa1399000 | MtrunA17_Chr4g0054981 | 33.065 | 124 | 79 | 2 | 5 | 127 | 14 | 134 | 9.45e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399000 | AT2G25180.1 | 52.581 | 310 | 126 | 6 | 3 | 297 | 11 | 314 | 1.93e-86 | 278 |
| Msa1399000 | AT4G31920.1 | 46.739 | 368 | 146 | 11 | 3 | 344 | 11 | 354 | 1.58e-82 | 267 |
| Msa1399000 | AT5G58080.1 | 42.998 | 407 | 154 | 16 | 3 | 375 | 12 | 374 | 6.27e-68 | 230 |
| Msa1399000 | AT3G16857.1 | 44.523 | 283 | 109 | 7 | 3 | 246 | 31 | 304 | 1.96e-64 | 222 |
| Msa1399000 | AT3G16857.2 | 43.816 | 283 | 111 | 6 | 3 | 246 | 31 | 304 | 3.56e-64 | 221 |
| Msa1399000 | AT1G67710.1 | 45.418 | 251 | 110 | 6 | 6 | 236 | 8 | 251 | 8.10e-56 | 195 |
| Msa1399000 | AT2G01760.1 | 42.222 | 270 | 136 | 6 | 1 | 251 | 3 | 271 | 2.72e-52 | 182 |
| Msa1399000 | AT3G16857.3 | 41.736 | 242 | 93 | 6 | 44 | 246 | 2 | 234 | 2.29e-47 | 174 |
| Msa1399000 | AT2G01760.2 | 38.255 | 298 | 136 | 7 | 1 | 251 | 3 | 299 | 2.39e-46 | 167 |
| Msa1399000 | AT5G49240.1 | 37.963 | 216 | 121 | 4 | 5 | 214 | 38 | 246 | 1.12e-37 | 140 |
| Msa1399000 | AT3G62670.1 | 35.468 | 203 | 119 | 3 | 10 | 212 | 42 | 232 | 4.54e-32 | 128 |
| Msa1399000 | AT1G67710.2 | 40.933 | 193 | 87 | 6 | 64 | 236 | 1 | 186 | 7.33e-31 | 125 |
| Msa1399000 | AT1G49190.1 | 30.137 | 219 | 132 | 3 | 4 | 212 | 29 | 236 | 3.45e-26 | 110 |
| Msa1399000 | AT2G01760.3 | 38.049 | 205 | 107 | 6 | 64 | 249 | 1 | 204 | 9.12e-26 | 108 |
| Msa1399000 | AT2G46790.1 | 39.024 | 123 | 70 | 2 | 9 | 127 | 37 | 158 | 1.79e-22 | 100 |
| Msa1399000 | AT2G46790.3 | 39.024 | 123 | 70 | 2 | 9 | 127 | 37 | 158 | 1.97e-22 | 100 |
| Msa1399000 | AT1G49190.2 | 38.400 | 125 | 77 | 0 | 4 | 128 | 29 | 153 | 5.29e-22 | 100 |
| Msa1399000 | AT5G24470.1 | 36.719 | 128 | 76 | 2 | 7 | 130 | 48 | 174 | 2.04e-20 | 95.1 |
| Msa1399000 | AT5G60100.7 | 37.008 | 127 | 76 | 2 | 5 | 127 | 59 | 185 | 7.61e-19 | 89.4 |
| Msa1399000 | AT5G60100.6 | 37.008 | 127 | 76 | 2 | 5 | 127 | 59 | 185 | 7.61e-19 | 89.4 |
| Msa1399000 | AT5G60100.4 | 37.008 | 127 | 76 | 2 | 5 | 127 | 59 | 185 | 7.61e-19 | 89.4 |
| Msa1399000 | AT5G60100.5 | 37.008 | 127 | 76 | 2 | 5 | 127 | 59 | 185 | 8.77e-19 | 89.7 |
| Msa1399000 | AT5G60100.3 | 37.008 | 127 | 76 | 2 | 5 | 127 | 59 | 185 | 8.77e-19 | 89.7 |
| Msa1399000 | AT5G60100.1 | 37.008 | 127 | 76 | 2 | 5 | 127 | 59 | 185 | 8.77e-19 | 89.7 |
| Msa1399000 | AT5G60100.2 | 37.008 | 127 | 76 | 2 | 5 | 127 | 59 | 185 | 1.79e-18 | 89.0 |
| Msa1399000 | AT1G67710.3 | 35.260 | 173 | 85 | 6 | 84 | 236 | 12 | 177 | 6.84e-18 | 86.7 |
| Msa1399000 | AT5G61380.1 | 33.871 | 124 | 79 | 1 | 9 | 129 | 19 | 142 | 6.95e-18 | 87.4 |
| Msa1399000 | AT5G02810.1 | 35.246 | 122 | 76 | 1 | 9 | 127 | 78 | 199 | 9.01e-18 | 87.0 |
| Msa1399000 | AT5G07210.2 | 25.000 | 292 | 160 | 9 | 7 | 248 | 14 | 296 | 1.89e-17 | 85.9 |
| Msa1399000 | AT2G27070.1 | 24.000 | 300 | 156 | 9 | 7 | 248 | 14 | 299 | 5.73e-16 | 81.3 |
| Msa1399000 | AT3G57040.2 | 28.395 | 162 | 94 | 2 | 11 | 150 | 11 | 172 | 8.38e-12 | 65.5 |
| Msa1399000 | AT3G57040.1 | 28.395 | 162 | 94 | 2 | 11 | 150 | 11 | 172 | 8.38e-12 | 65.5 |
| Msa1399000 | AT3G56380.2 | 31.298 | 131 | 76 | 2 | 9 | 125 | 20 | 150 | 2.83e-11 | 62.4 |
| Msa1399000 | AT3G56380.1 | 31.538 | 130 | 76 | 2 | 9 | 125 | 20 | 149 | 5.18e-11 | 61.6 |
| Msa1399000 | AT1G10470.1 | 31.579 | 133 | 79 | 2 | 11 | 131 | 36 | 168 | 8.01e-11 | 63.2 |
| Msa1399000 | AT1G10470.3 | 31.579 | 133 | 79 | 2 | 11 | 131 | 22 | 154 | 8.06e-11 | 62.8 |
Find 111 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCGAATATCTTGATTAAA+TGG | 0.148937 | tig0022328:-27614 | None:intergenic |
| TAGAACATGTCTCAAGATTT+TGG | 0.179210 | tig0022328:+26194 | Msa1399000:CDS |
| GGAAGGTAAGAGTTTGTTTC+TGG | 0.198817 | tig0022328:-28795 | None:intergenic |
| AGCTAATATGGCCGAAGATT+TGG | 0.235811 | tig0022328:+28401 | Msa1399000:CDS |
| TTTAAGCTTCTTGAGCTTAT+TGG | 0.242147 | tig0022328:+26968 | Msa1399000:CDS |
| ATTCCTTTCATCACCATCTT+TGG | 0.253553 | tig0022328:-27130 | None:intergenic |
| ACTCGACAGGTGATCATCTT+AGG | 0.278334 | tig0022328:+28625 | Msa1399000:CDS |
| TGATGTCCCACCAGAGAAAT+TGG | 0.298503 | tig0022328:-29346 | None:intergenic |
| AATTTCCATCATGGTTGTTA+TGG | 0.300876 | tig0022328:-28932 | None:intergenic |
| TGTACCTCCTTCAATGTAAC+AGG | 0.302320 | tig0022328:-27184 | None:intergenic |
| CTTGCTGCTGTTAAACAATT+AGG | 0.302670 | tig0022328:+27466 | Msa1399000:CDS |
| ATGAATGATCAATTTCCTAT+TGG | 0.313965 | tig0022328:+26144 | Msa1399000:CDS |
| CCATTTCCACTATCAGAATT+AGG | 0.318838 | tig0022328:-27268 | None:intergenic |
| CCTAATTCTGATAGTGGAAA+TGG | 0.330629 | tig0022328:+27268 | Msa1399000:CDS |
| GCTAATATGGCCGAAGATTT+GGG | 0.348373 | tig0022328:+28402 | Msa1399000:CDS |
| CATGTGGTTGGTAGTTCAAT+AGG | 0.353197 | tig0022328:+28966 | Msa1399000:CDS |
| GCATGGACAAAACCTTCTTT+TGG | 0.354006 | tig0022328:-28816 | None:intergenic |
| TGAAGGAGGTACAAATGATT+TGG | 0.363320 | tig0022328:+27194 | Msa1399000:CDS |
| TCTAATAATGTGCCATTTCA+AGG | 0.366783 | tig0022328:+28897 | Msa1399000:CDS |
| TTCACAACATGAATCATAGA+AGG | 0.379234 | tig0022328:-28990 | None:intergenic |
| GATATAACCCATTCTTGAAT+AGG | 0.403697 | tig0022328:-28442 | None:intergenic |
| AAAGAAGGTGCAATGACATT+TGG | 0.412055 | tig0022328:+28751 | Msa1399000:CDS |
| CAATTATATGCCAATTTCTC+TGG | 0.412361 | tig0022328:+29336 | Msa1399000:CDS |
| CTACTACTCATACCACTAGA+TGG | 0.416526 | tig0022328:-28543 | None:intergenic |
| AGAAGAAGCCTCGAGTTGTT+TGG | 0.418038 | tig0022328:+27419 | Msa1399000:CDS |
| TACCATGGTATTGACACCTT+TGG | 0.419217 | tig0022328:-26227 | None:intergenic |
| TTATTATTATGAAACTGTCT+AGG | 0.422621 | tig0022328:-28501 | None:intergenic |
| TATGAACATTGCTGATTACT+AGG | 0.423694 | tig0022328:-26928 | None:intergenic |
| TTATTATCCCATCCTTGAAA+TGG | 0.424148 | tig0022328:-28909 | None:intergenic |
| AGCTTAAACCCATCCATGTC+TGG | 0.428879 | tig0022328:-26953 | None:intergenic |
| AACTCTTACCTTCCAAAAGA+AGG | 0.429300 | tig0022328:+28804 | Msa1399000:CDS |
| GTTTCTGGTAATTGCAGCAT+AGG | 0.430843 | tig0022328:-28780 | None:intergenic |
| CTCGAATATCTTGATTAAAT+GGG | 0.439169 | tig0022328:-27613 | None:intergenic |
| TGATAGATCCTATTCAAGAA+TGG | 0.441988 | tig0022328:+28434 | Msa1399000:CDS |
| GATAGATCCTATTCAAGAAT+GGG | 0.444292 | tig0022328:+28435 | Msa1399000:CDS |
| TTCAGATCCTTTCCATCTAG+TGG | 0.445066 | tig0022328:+28531 | Msa1399000:CDS |
| GCAAGAACACGCATTCCAAT+AGG | 0.451965 | tig0022328:-26159 | None:intergenic |
| TCTTTGAACATCATTCAGAT+TGG | 0.469109 | tig0022328:-28670 | None:intergenic |
| ATGAATAATCAGATGAAGGC+TGG | 0.470466 | tig0022328:+29104 | Msa1399000:CDS |
| ATGGGTTATATCAGTGGAGT+TGG | 0.473556 | tig0022328:+28453 | Msa1399000:CDS |
| GGGAAACATTCGGCTGGGAC+AGG | 0.477461 | tig0022328:+27289 | Msa1399000:CDS |
| GCTGAAACCTGTTACATTGA+AGG | 0.477526 | tig0022328:+27177 | Msa1399000:CDS |
| CTAATTCTGATAGTGGAAAT+GGG | 0.482228 | tig0022328:+27269 | Msa1399000:CDS |
| TGAGCTTATTGGACTTGAGA+TGG | 0.484301 | tig0022328:+26979 | Msa1399000:CDS |
| TTTCTGGTAATTGCAGCATA+GGG | 0.484334 | tig0022328:-28779 | None:intergenic |
| AGAATCATTACCCAAATCTT+CGG | 0.485778 | tig0022328:-28412 | None:intergenic |
| TGTGAGTTCATGTTATATGT+AGG | 0.486197 | tig0022328:-28852 | None:intergenic |
| GAATGCTATTGAAGGAAACT+TGG | 0.492011 | tig0022328:+29010 | Msa1399000:CDS |
| TGATTTGGCAACATGTAGTC+AGG | 0.492304 | tig0022328:+27209 | Msa1399000:CDS |
| TGATCATCTTAGGTTTCAAT+CGG | 0.494786 | tig0022328:+28635 | Msa1399000:CDS |
| CATGTTGTGAATGCTATTGA+AGG | 0.494924 | tig0022328:+29002 | Msa1399000:CDS |
| GATGCGCCTAATTCTGATAG+TGG | 0.498616 | tig0022328:+27262 | Msa1399000:CDS |
| TGAGAGTCTACAGAAGGAAA+TGG | 0.499941 | tig0022328:-28696 | None:intergenic |
| GCCAGTAGTGTTAATCTGCA+TGG | 0.509822 | tig0022328:+28579 | Msa1399000:CDS |
| TAGTGGAAATGGGAAACATT+CGG | 0.510168 | tig0022328:+27279 | Msa1399000:CDS |
| GGTTATATCAGTGGAGTTGG+TGG | 0.511432 | tig0022328:+28456 | Msa1399000:CDS |
| GGAAATGGGAAACATTCGGC+TGG | 0.517134 | tig0022328:+27283 | Msa1399000:CDS |
| TACCATCCTTCTCATGTGGT+TGG | 0.521062 | tig0022328:+28954 | Msa1399000:CDS |
| GAAGAACGAAGATGATGATG+AGG | 0.524981 | tig0022328:+27354 | Msa1399000:CDS |
| TTGCATAACTTACTTATGAC+AGG | 0.526242 | tig0022328:-27007 | None:intergenic |
| TCCATGCAGATTAACACTAC+TGG | 0.528713 | tig0022328:-28580 | None:intergenic |
| AAGGATGGTAATTTCCATCA+TGG | 0.529123 | tig0022328:-28941 | None:intergenic |
| AATAACCATAACAACCATGA+TGG | 0.531658 | tig0022328:+28927 | Msa1399000:CDS |
| ATTCAGATTGGCGCGAGCTA+TGG | 0.531857 | tig0022328:-28658 | None:intergenic |
| TATTATTATGAAACTGTCTA+GGG | 0.535599 | tig0022328:-28500 | None:intergenic |
| TTCATATGCCAGACATGGAT+GGG | 0.536690 | tig0022328:+26945 | Msa1399000:CDS |
| TATGATGAATAATCAGATGA+AGG | 0.541034 | tig0022328:+29100 | Msa1399000:CDS |
| GTTCATATGCCAGACATGGA+TGG | 0.546140 | tig0022328:+26944 | Msa1399000:CDS |
| ACCTCATGTGGTTTCAATGA+CGG | 0.547065 | tig0022328:-29074 | None:intergenic |
| TAATGTGCCATTTCAAGGAT+GGG | 0.550140 | tig0022328:+28902 | Msa1399000:CDS |
| TTATATGCCAATTTCTCTGG+TGG | 0.550617 | tig0022328:+29339 | Msa1399000:CDS |
| GAGTTGTTCAAATTATGTGC+AGG | 0.552747 | tig0022328:-28606 | None:intergenic |
| CATAATTTGAACAACTCGAC+AGG | 0.552801 | tig0022328:+28612 | Msa1399000:CDS |
| CAATGTTCATATGCCAGACA+TGG | 0.556391 | tig0022328:+26940 | Msa1399000:CDS |
| ATAATGTGCCATTTCAAGGA+TGG | 0.556574 | tig0022328:+28901 | Msa1399000:CDS |
| GGAAGAAGAAAACTAGCAAA+CGG | 0.556828 | tig0022328:+27230 | Msa1399000:CDS |
| TTTAATCAAGATATTCGAGT+AGG | 0.558346 | tig0022328:+27584 | Msa1399000:intron |
| TTCATCATATATACCTCATG+TGG | 0.558721 | tig0022328:-29086 | None:intergenic |
| TGATGATGAGGATGAGAATG+AGG | 0.567738 | tig0022328:+27366 | Msa1399000:CDS |
| CATGAGAGTCATGATCAAAC+CGG | 0.571164 | tig0022328:+29169 | Msa1399000:CDS |
| TATATGCCAATTTCTCTGGT+GGG | 0.573019 | tig0022328:+29340 | Msa1399000:CDS |
| GAGTTCATGTTATATGTAGG+AGG | 0.588472 | tig0022328:-28849 | None:intergenic |
| ACTCATACCACTAGATGGAA+AGG | 0.588967 | tig0022328:-28538 | None:intergenic |
| GAACTACCAACCACATGAGA+AGG | 0.589560 | tig0022328:-28960 | None:intergenic |
| TGTTAGTGCACTTTGAGCAG+TGG | 0.591132 | tig0022328:-26867 | None:intergenic |
| TCAAGAATGGGTTATATCAG+TGG | 0.601175 | tig0022328:+28447 | Msa1399000:CDS |
| TGCAGATTAACACTACTGGC+AGG | 0.606997 | tig0022328:-28576 | None:intergenic |
| GTGATGAAAGGAATTGATCA+TGG | 0.607173 | tig0022328:+27139 | Msa1399000:CDS |
| CAATTATTGTGATCGTATCG+CGG | 0.612466 | tig0022328:+29037 | Msa1399000:CDS |
| TGCGAATGATGATCCAAAGA+TGG | 0.615837 | tig0022328:+27117 | Msa1399000:CDS |
| TGCATATTCTAATCTTGCCG+CGG | 0.619450 | tig0022328:-29372 | None:intergenic |
| GAAATGGGAAACATTCGGCT+GGG | 0.620073 | tig0022328:+27284 | Msa1399000:CDS |
| TAGGAGGCATAGCAGCAGCA+TGG | 0.623883 | tig0022328:-28833 | None:intergenic |
| GAATGTTGAGAGTCTACAGA+AGG | 0.629708 | tig0022328:-28702 | None:intergenic |
| AAATTACCATCCTTCTCATG+TGG | 0.631597 | tig0022328:+28950 | Msa1399000:CDS |
| GAAGCCTCGAGTTGTTTGGT+CGG | 0.632069 | tig0022328:+27423 | Msa1399000:CDS |
| ACATGTTCTATCATCATCGA+CGG | 0.636994 | tig0022328:-26181 | None:intergenic |
| GATCCAAAGATGGTGATGAA+AGG | 0.637771 | tig0022328:+27127 | Msa1399000:CDS |
| TCACAACATGAATCATAGAA+GGG | 0.643072 | tig0022328:-28989 | None:intergenic |
| TACCAACCACATGAGAAGGA+TGG | 0.647791 | tig0022328:-28956 | None:intergenic |
| CTCCAAAGGTGTCAATACCA+TGG | 0.650196 | tig0022328:+26225 | Msa1399000:CDS |
| AATCAAGCTCATTAGACATG+TGG | 0.650925 | tig0022328:-29133 | None:intergenic |
| TAACAGCAGCAAGAAACTTG+CGG | 0.653136 | tig0022328:-27456 | None:intergenic |
| TAATGAGCTTGATTCGCTCG+AGG | 0.661321 | tig0022328:+29142 | Msa1399000:CDS |
| TCGTGACAATGATGATTCGA+CGG | 0.663799 | tig0022328:+27393 | Msa1399000:CDS |
| ACATATAACATGAACTCACA+AGG | 0.670292 | tig0022328:+28855 | Msa1399000:CDS |
| CTGGTGGGACATCAATGCCG+CGG | 0.675642 | tig0022328:+29355 | Msa1399000:CDS |
| GAAACCTGTTACATTGAAGG+AGG | 0.684192 | tig0022328:+27180 | Msa1399000:CDS |
| TCAGCCGACCAAACAACTCG+AGG | 0.687224 | tig0022328:-27427 | None:intergenic |
| AACTGTCTAGGGTCATTCAG+TGG | 0.690957 | tig0022328:-28489 | None:intergenic |
| TCCGTCATTGAAACCACATG+AGG | 0.701079 | tig0022328:+29073 | Msa1399000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTTCTTTTGATTTTTT+TGG | + | tig0022328:26288-26307 | Msa1399000:intron | 15.0% |
| !! | AATATAAGATCACAAAATAT+TGG | - | tig0022328:26667-26686 | None:intergenic | 15.0% |
| !!! | TGTGATCTTATATTATTTTT+TGG | + | tig0022328:26673-26692 | Msa1399000:intron | 15.0% |
| !! | AAAATAAGAAATCTAATCAT+TGG | - | tig0022328:26766-26785 | None:intergenic | 15.0% |
| !!! | ATTTTTCATAATTTTTGTTG+TGG | + | tig0022328:26828-26847 | Msa1399000:intron | 15.0% |
| !! | ATTTAAGGAAAATACTTATA+TGG | - | tig0022328:28236-28255 | None:intergenic | 15.0% |
| !!! | ATGTGATTACATTTAATTTA+AGG | - | tig0022328:28251-28270 | None:intergenic | 15.0% |
| !! | TAAATTAAATGTAATCACAT+CGG | + | tig0022328:28251-28270 | Msa1399000:intron | 15.0% |
| !!! | AGTTTATAAGCATTTTATTT+AGG | + | tig0022328:28319-28338 | Msa1399000:intron | 15.0% |
| !! | GATTCATAAAAATTCAACAT+TGG | - | tig0022328:26501-26520 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTGATACTGTTT+AGG | + | tig0022328:26537-26556 | Msa1399000:intron | 20.0% |
| !!! | AATCTCTAAAAGAATAAGAT+CGG | - | tig0022328:26595-26614 | None:intergenic | 20.0% |
| !!! | ATTTCATAGATTTTATGATG+TGG | + | tig0022328:26795-26814 | Msa1399000:intron | 20.0% |
| !! | CATGCATAGAAAATTATTTA+GGG | + | tig0022328:27060-27079 | Msa1399000:intron | 20.0% |
| !! | TATAAGATAAGAAAAATACC+TGG | - | tig0022328:27957-27976 | None:intergenic | 20.0% |
| !! | TATTATTATGAAACTGTCTA+GGG | - | tig0022328:28503-28522 | None:intergenic | 20.0% |
| !! | TTATTATTATGAAACTGTCT+AGG | - | tig0022328:28504-28523 | None:intergenic | 20.0% |
| !!! | CATTGCATAAATTTTATTAC+CGG | - | tig0022328:29191-29210 | None:intergenic | 20.0% |
| ! | ATGAATGATCAATTTCCTAT+TGG | + | tig0022328:26144-26163 | Msa1399000:CDS | 25.0% |
| ! | CAAAAAAAACATACATACCA+TGG | - | tig0022328:26245-26264 | None:intergenic | 25.0% |
| ! | AATAAGATCGGTCAAAATAT+AGG | - | tig0022328:26583-26602 | None:intergenic | 25.0% |
| ! | TTTAATTGCATCCAAATTGT+TGG | + | tig0022328:26706-26725 | Msa1399000:intron | 25.0% |
| !! | CCTAAATAATTTTCTATGCA+TGG | - | tig0022328:27062-27081 | None:intergenic | 25.0% |
| ! | CCATGCATAGAAAATTATTT+AGG | + | tig0022328:27059-27078 | Msa1399000:intron | 25.0% |
| ! | TTAAATGGGAACAAATAAAG+AGG | - | tig0022328:27569-27588 | None:intergenic | 25.0% |
| ! | CTCGAATATCTTGATTAAAT+GGG | - | tig0022328:27583-27602 | None:intergenic | 25.0% |
| ! | ACTCGAATATCTTGATTAAA+TGG | - | tig0022328:27584-27603 | None:intergenic | 25.0% |
| ! | TTTAATCAAGATATTCGAGT+AGG | + | tig0022328:27584-27603 | Msa1399000:intron | 25.0% |
| ! | CTCGAATATCTTGATTAAAT+GGG | - | tig0022328:27583-27602 | None:intergenic | 25.0% |
| ! | ACTCGAATATCTTGATTAAA+TGG | - | tig0022328:27584-27603 | None:intergenic | 25.0% |
| ! | TTTAATCAAGATATTCGAGT+AGG | + | tig0022328:27584-27603 | Msa1399000:intron | 25.0% |
| ! | GTTTAATAATCTTCATAGCA+TGG | - | tig0022328:27698-27717 | None:intergenic | 25.0% |
| ! | TATAGAAAAACTTCATAGCA+TGG | - | tig0022328:27820-27839 | None:intergenic | 25.0% |
| !!! | ATCAAGTCAAGAATCTTTTT+TGG | - | tig0022328:27892-27911 | None:intergenic | 25.0% |
| !! | AAAAAAGATTCTTGACTTGA+TGG | + | tig0022328:27891-27910 | Msa1399000:intron | 25.0% |
| ! | TCTGAAAAAACAAGCTAATA+TGG | + | tig0022328:28389-28408 | Msa1399000:CDS | 25.0% |
| ! | ATCCTTTACTTGAAAAAAGA+AGG | + | tig0022328:28736-28755 | Msa1399000:CDS | 25.0% |
| ! | TATGATGAATAATCAGATGA+AGG | + | tig0022328:29100-29119 | Msa1399000:CDS | 25.0% |
| ! | CAGAAAGCAATATAGAAAAA+TGG | - | tig0022328:29291-29310 | None:intergenic | 25.0% |
| ! | TAGAACATGTCTCAAGATTT+TGG | + | tig0022328:26194-26213 | Msa1399000:CDS | 30.0% |
| !!! | TCTTTTGATTTTTTTGGCCT+AGG | + | tig0022328:26294-26313 | Msa1399000:intron | 30.0% |
| TCATTCAAATTACATTGCCT+AGG | - | tig0022328:26314-26333 | None:intergenic | 30.0% | |
| TTTAGAGATTGCACATGATT+TGG | + | tig0022328:26605-26624 | Msa1399000:intron | 30.0% | |
| ATCTAGTGAATCCAACAATT+TGG | - | tig0022328:26720-26739 | None:intergenic | 30.0% | |
| ! | TATGAACATTGCTGATTACT+AGG | - | tig0022328:26931-26950 | None:intergenic | 30.0% |
| TTTAAGCTTCTTGAGCTTAT+TGG | + | tig0022328:26968-26987 | Msa1399000:CDS | 30.0% | |
| TTGCATAACTTACTTATGAC+AGG | - | tig0022328:27010-27029 | None:intergenic | 30.0% | |
| !! | CTAATTCTGATAGTGGAAAT+GGG | + | tig0022328:27269-27288 | Msa1399000:CDS | 30.0% |
| AAAGCCATCTAGAAAAAGAA+AGG | + | tig0022328:27330-27349 | Msa1399000:CDS | 30.0% | |
| ! | TTCTCCTTTCTTTTTCTAGA+TGG | - | tig0022328:27337-27356 | None:intergenic | 30.0% |
| TTAAACGTTGATATTCGAGT+AGG | + | tig0022328:27728-27747 | Msa1399000:intron | 30.0% | |
| ATAAGAAAAATACCTGGAGA+TGG | - | tig0022328:27951-27970 | None:intergenic | 30.0% | |
| TTAGATGATCACAACCATTT+CGG | + | tig0022328:28088-28107 | Msa1399000:intron | 30.0% | |
| ! | ATGATTTGAGCACATCATTT+TGG | - | tig0022328:28208-28227 | None:intergenic | 30.0% |
| AGAATCATTACCCAAATCTT+CGG | - | tig0022328:28415-28434 | None:intergenic | 30.0% | |
| TGATAGATCCTATTCAAGAA+TGG | + | tig0022328:28434-28453 | Msa1399000:CDS | 30.0% | |
| GATAGATCCTATTCAAGAAT+GGG | + | tig0022328:28435-28454 | Msa1399000:CDS | 30.0% | |
| GATATAACCCATTCTTGAAT+AGG | - | tig0022328:28445-28464 | None:intergenic | 30.0% | |
| TGATCATCTTAGGTTTCAAT+CGG | + | tig0022328:28635-28654 | Msa1399000:CDS | 30.0% | |
| TCTTTGAACATCATTCAGAT+TGG | - | tig0022328:28673-28692 | None:intergenic | 30.0% | |
| !!! | CACCTTCTTTTTTCAAGTAA+AGG | - | tig0022328:28741-28760 | None:intergenic | 30.0% |
| TGTGAGTTCATGTTATATGT+AGG | - | tig0022328:28855-28874 | None:intergenic | 30.0% | |
| ACATATAACATGAACTCACA+AGG | + | tig0022328:28855-28874 | Msa1399000:CDS | 30.0% | |
| !! | TCTAATAATGTGCCATTTCA+AGG | + | tig0022328:28897-28916 | Msa1399000:CDS | 30.0% |
| TTATTATCCCATCCTTGAAA+TGG | - | tig0022328:28912-28931 | None:intergenic | 30.0% | |
| AATAACCATAACAACCATGA+TGG | + | tig0022328:28927-28946 | Msa1399000:CDS | 30.0% | |
| AATTTCCATCATGGTTGTTA+TGG | - | tig0022328:28935-28954 | None:intergenic | 30.0% | |
| TCACAACATGAATCATAGAA+GGG | - | tig0022328:28992-29011 | None:intergenic | 30.0% | |
| TTCACAACATGAATCATAGA+AGG | - | tig0022328:28993-29012 | None:intergenic | 30.0% | |
| TTCATCATATATACCTCATG+TGG | - | tig0022328:29089-29108 | None:intergenic | 30.0% | |
| GGATCATAAGTTAAATGCAT+CGG | - | tig0022328:29270-29289 | None:intergenic | 30.0% | |
| CAATTATATGCCAATTTCTC+TGG | + | tig0022328:29336-29355 | Msa1399000:CDS | 30.0% | |
| ACATGTTCTATCATCATCGA+CGG | - | tig0022328:26184-26203 | None:intergenic | 35.0% | |
| ATTCCTTTCATCACCATCTT+TGG | - | tig0022328:27133-27152 | None:intergenic | 35.0% | |
| GTGATGAAAGGAATTGATCA+TGG | + | tig0022328:27139-27158 | Msa1399000:CDS | 35.0% | |
| ! | TGAAGGAGGTACAAATGATT+TGG | + | tig0022328:27194-27213 | Msa1399000:CDS | 35.0% |
| GGAAGAAGAAAACTAGCAAA+CGG | + | tig0022328:27230-27249 | Msa1399000:CDS | 35.0% | |
| CCATTTCCACTATCAGAATT+AGG | - | tig0022328:27271-27290 | None:intergenic | 35.0% | |
| !! | CCTAATTCTGATAGTGGAAA+TGG | + | tig0022328:27268-27287 | Msa1399000:CDS | 35.0% |
| TAGTGGAAATGGGAAACATT+CGG | + | tig0022328:27279-27298 | Msa1399000:CDS | 35.0% | |
| CTTGCTGCTGTTAAACAATT+AGG | + | tig0022328:27466-27485 | Msa1399000:CDS | 35.0% | |
| ! | TAAACGTTGAGATTAGTCCT+AGG | + | tig0022328:27650-27669 | Msa1399000:intron | 35.0% |
| ! | AAACGTTGAGATTAGTCCTA+GGG | + | tig0022328:27651-27670 | Msa1399000:intron | 35.0% |
| !!! | AGTTGTTATTTTGCTTGCAG+AGG | + | tig0022328:27861-27880 | Msa1399000:intron | 35.0% |
| TGGATGATGAAAACCTTACA+AGG | + | tig0022328:27911-27930 | Msa1399000:intron | 35.0% | |
| GGATGATGAAAACCTTACAA+GGG | + | tig0022328:27912-27931 | Msa1399000:intron | 35.0% | |
| GTCATGTTTGGTATCTTTGT+CGG | - | tig0022328:28009-28028 | None:intergenic | 35.0% | |
| TGATGTGTTAGTGTCATGTT+TGG | - | tig0022328:28021-28040 | None:intergenic | 35.0% | |
| AACCATTTCGGCATAAAATC+TGG | + | tig0022328:28100-28119 | Msa1399000:intron | 35.0% | |
| ACCATTTCGGCATAAAATCT+GGG | + | tig0022328:28101-28120 | Msa1399000:intron | 35.0% | |
| !! | TCAAGAATGGGTTATATCAG+TGG | + | tig0022328:28447-28466 | Msa1399000:CDS | 35.0% |
| GAGTTGTTCAAATTATGTGC+AGG | - | tig0022328:28609-28628 | None:intergenic | 35.0% | |
| CATAATTTGAACAACTCGAC+AGG | + | tig0022328:28612-28631 | Msa1399000:CDS | 35.0% | |
| ! | AAAGAAGGTGCAATGACATT+TGG | + | tig0022328:28751-28770 | Msa1399000:CDS | 35.0% |
| ! | TTTCTGGTAATTGCAGCATA+GGG | - | tig0022328:28782-28801 | None:intergenic | 35.0% |
| AACTCTTACCTTCCAAAAGA+AGG | + | tig0022328:28804-28823 | Msa1399000:CDS | 35.0% | |
| GAGTTCATGTTATATGTAGG+AGG | - | tig0022328:28852-28871 | None:intergenic | 35.0% | |
| !! | ATAATGTGCCATTTCAAGGA+TGG | + | tig0022328:28901-28920 | Msa1399000:CDS | 35.0% |
| !! | TAATGTGCCATTTCAAGGAT+GGG | + | tig0022328:28902-28921 | Msa1399000:CDS | 35.0% |
| AAGGATGGTAATTTCCATCA+TGG | - | tig0022328:28944-28963 | None:intergenic | 35.0% | |
| AAATTACCATCCTTCTCATG+TGG | + | tig0022328:28950-28969 | Msa1399000:CDS | 35.0% | |
| CATGTTGTGAATGCTATTGA+AGG | + | tig0022328:29002-29021 | Msa1399000:CDS | 35.0% | |
| GAATGCTATTGAAGGAAACT+TGG | + | tig0022328:29010-29029 | Msa1399000:CDS | 35.0% | |
| CAATTATTGTGATCGTATCG+CGG | + | tig0022328:29037-29056 | Msa1399000:CDS | 35.0% | |
| ATGAATAATCAGATGAAGGC+TGG | + | tig0022328:29104-29123 | Msa1399000:CDS | 35.0% | |
| AATCAAGCTCATTAGACATG+TGG | - | tig0022328:29136-29155 | None:intergenic | 35.0% | |
| TTATATGCCAATTTCTCTGG+TGG | + | tig0022328:29339-29358 | Msa1399000:CDS | 35.0% | |
| TATATGCCAATTTCTCTGGT+GGG | + | tig0022328:29340-29359 | Msa1399000:CDS | 35.0% | |
| !! | TTTTGGAGAGACTTCTCCAA+AGG | + | tig0022328:26211-26230 | Msa1399000:CDS | 40.0% |
| !! | TACCATGGTATTGACACCTT+TGG | - | tig0022328:26230-26249 | None:intergenic | 40.0% |
| CAATGTTCATATGCCAGACA+TGG | + | tig0022328:26940-26959 | Msa1399000:CDS | 40.0% | |
| TTCATATGCCAGACATGGAT+GGG | + | tig0022328:26945-26964 | Msa1399000:CDS | 40.0% | |
| TGAGCTTATTGGACTTGAGA+TGG | + | tig0022328:26979-26998 | Msa1399000:CDS | 40.0% | |
| TGCGAATGATGATCCAAAGA+TGG | + | tig0022328:27117-27136 | Msa1399000:CDS | 40.0% | |
| ! | GATCCAAAGATGGTGATGAA+AGG | + | tig0022328:27127-27146 | Msa1399000:CDS | 40.0% |
| GCTGAAACCTGTTACATTGA+AGG | + | tig0022328:27177-27196 | Msa1399000:CDS | 40.0% | |
| GAAACCTGTTACATTGAAGG+AGG | + | tig0022328:27180-27199 | Msa1399000:CDS | 40.0% | |
| TGTACCTCCTTCAATGTAAC+AGG | - | tig0022328:27187-27206 | None:intergenic | 40.0% | |
| ! | TGATTTGGCAACATGTAGTC+AGG | + | tig0022328:27209-27228 | Msa1399000:CDS | 40.0% |
| ! | GAAGAACGAAGATGATGATG+AGG | + | tig0022328:27354-27373 | Msa1399000:CDS | 40.0% |
| ! | TGATGATGAGGATGAGAATG+AGG | + | tig0022328:27366-27385 | Msa1399000:CDS | 40.0% |
| TCGTGACAATGATGATTCGA+CGG | + | tig0022328:27393-27412 | Msa1399000:CDS | 40.0% | |
| TAACAGCAGCAAGAAACTTG+CGG | - | tig0022328:27459-27478 | None:intergenic | 40.0% | |
| ! | TTTTGCGCATTGAAGATCGA+GGG | - | tig0022328:27510-27529 | None:intergenic | 40.0% |
| ! | TTTTTGCGCATTGAAGATCG+AGG | - | tig0022328:27511-27530 | None:intergenic | 40.0% |
| ! | AACGTTGAGATTAGTCCTAG+GGG | + | tig0022328:27652-27671 | Msa1399000:intron | 40.0% |
| AAACCTTACAAGGGAGAATG+TGG | + | tig0022328:27921-27940 | Msa1399000:intron | 40.0% | |
| AGCTAATATGGCCGAAGATT+TGG | + | tig0022328:28401-28420 | Msa1399000:CDS | 40.0% | |
| GCTAATATGGCCGAAGATTT+GGG | + | tig0022328:28402-28421 | Msa1399000:CDS | 40.0% | |
| ! | ATGGGTTATATCAGTGGAGT+TGG | + | tig0022328:28453-28472 | Msa1399000:CDS | 40.0% |
| TTCAGATCCTTTCCATCTAG+TGG | + | tig0022328:28531-28550 | Msa1399000:CDS | 40.0% | |
| ACTCATACCACTAGATGGAA+AGG | - | tig0022328:28541-28560 | None:intergenic | 40.0% | |
| CTACTACTCATACCACTAGA+TGG | - | tig0022328:28546-28565 | None:intergenic | 40.0% | |
| TCCATGCAGATTAACACTAC+TGG | - | tig0022328:28583-28602 | None:intergenic | 40.0% | |
| TGAGAGTCTACAGAAGGAAA+TGG | - | tig0022328:28699-28718 | None:intergenic | 40.0% | |
| GAATGTTGAGAGTCTACAGA+AGG | - | tig0022328:28705-28724 | None:intergenic | 40.0% | |
| !! | GTTTCTGGTAATTGCAGCAT+AGG | - | tig0022328:28783-28802 | None:intergenic | 40.0% |
| ! | GGAAGGTAAGAGTTTGTTTC+TGG | - | tig0022328:28798-28817 | None:intergenic | 40.0% |
| ! | GGACAAAACCTTCTTTTGGA+AGG | - | tig0022328:28815-28834 | None:intergenic | 40.0% |
| ! | GCATGGACAAAACCTTCTTT+TGG | - | tig0022328:28819-28838 | None:intergenic | 40.0% |
| !! | CATGTGGTTGGTAGTTCAAT+AGG | + | tig0022328:28966-28985 | Msa1399000:CDS | 40.0% |
| ACCTCATGTGGTTTCAATGA+CGG | - | tig0022328:29077-29096 | None:intergenic | 40.0% | |
| CATGAGAGTCATGATCAAAC+CGG | + | tig0022328:29169-29188 | Msa1399000:CDS | 40.0% | |
| GCAAGAACACGCATTCCAAT+AGG | - | tig0022328:26162-26181 | None:intergenic | 45.0% | |
| !! | CTCCAAAGGTGTCAATACCA+TGG | + | tig0022328:26225-26244 | Msa1399000:CDS | 45.0% |
| TGTTAGTGCACTTTGAGCAG+TGG | - | tig0022328:26870-26889 | None:intergenic | 45.0% | |
| GTTCATATGCCAGACATGGA+TGG | + | tig0022328:26944-26963 | Msa1399000:CDS | 45.0% | |
| AGCTTAAACCCATCCATGTC+TGG | - | tig0022328:26956-26975 | None:intergenic | 45.0% | |
| GATGCGCCTAATTCTGATAG+TGG | + | tig0022328:27262-27281 | Msa1399000:CDS | 45.0% | |
| GAAATGGGAAACATTCGGCT+GGG | + | tig0022328:27284-27303 | Msa1399000:CDS | 45.0% | |
| ! | AGAAGAAGCCTCGAGTTGTT+TGG | + | tig0022328:27419-27438 | Msa1399000:CDS | 45.0% |
| ATTAGTCCTAGGGGTGAATG+TGG | + | tig0022328:27661-27680 | Msa1399000:intron | 45.0% | |
| TAGCCACATTCTCCCTTGTA+AGG | - | tig0022328:27927-27946 | None:intergenic | 45.0% | |
| ! | GCCCAGATTTTATGCCGAAA+TGG | - | tig0022328:28105-28124 | None:intergenic | 45.0% |
| GCACGTACACTTCAGATTGA+AGG | - | tig0022328:28294-28313 | None:intergenic | 45.0% | |
| GGTTATATCAGTGGAGTTGG+TGG | + | tig0022328:28456-28475 | Msa1399000:CDS | 45.0% | |
| ! | AACTGTCTAGGGTCATTCAG+TGG | - | tig0022328:28492-28511 | None:intergenic | 45.0% |
| TGCAGATTAACACTACTGGC+AGG | - | tig0022328:28579-28598 | None:intergenic | 45.0% | |
| GCCAGTAGTGTTAATCTGCA+TGG | + | tig0022328:28579-28598 | Msa1399000:CDS | 45.0% | |
| ACTCGACAGGTGATCATCTT+AGG | + | tig0022328:28625-28644 | Msa1399000:CDS | 45.0% | |
| TACCATCCTTCTCATGTGGT+TGG | + | tig0022328:28954-28973 | Msa1399000:CDS | 45.0% | |
| TACCAACCACATGAGAAGGA+TGG | - | tig0022328:28959-28978 | None:intergenic | 45.0% | |
| GAACTACCAACCACATGAGA+AGG | - | tig0022328:28963-28982 | None:intergenic | 45.0% | |
| TCCGTCATTGAAACCACATG+AGG | + | tig0022328:29073-29092 | Msa1399000:CDS | 45.0% | |
| ! | TAATGAGCTTGATTCGCTCG+AGG | + | tig0022328:29142-29161 | Msa1399000:CDS | 45.0% |
| TGATGTCCCACCAGAGAAAT+TGG | - | tig0022328:29349-29368 | None:intergenic | 45.0% | |
| !!! | TTTTTTGAAATATTTAAAAT+AGG | + | tig0022328:26258-26277 | Msa1399000:intron | 5.0% |
| GGAAATGGGAAACATTCGGC+TGG | + | tig0022328:27283-27302 | Msa1399000:CDS | 50.0% | |
| ! | GAAGCCTCGAGTTGTTTGGT+CGG | + | tig0022328:27423-27442 | Msa1399000:CDS | 50.0% |
| ACATAGCCACATTCACCCCT+AGG | - | tig0022328:27670-27689 | None:intergenic | 50.0% | |
| ATTCAGATTGGCGCGAGCTA+TGG | - | tig0022328:28661-28680 | None:intergenic | 50.0% | |
| TCAGCCGACCAAACAACTCG+AGG | - | tig0022328:27430-27449 | None:intergenic | 55.0% | |
| ! | GAATGTGGCTAGCCATCTCC+AGG | + | tig0022328:27936-27955 | Msa1399000:intron | 55.0% |
| ! | TAGGAGGCATAGCAGCAGCA+TGG | - | tig0022328:28836-28855 | None:intergenic | 55.0% |
| GGGAAACATTCGGCTGGGAC+AGG | + | tig0022328:27289-27308 | Msa1399000:CDS | 60.0% | |
| CTGGTGGGACATCAATGCCG+CGG | + | tig0022328:29355-29374 | Msa1399000:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022328 | gene | 26144 | 29386 | 26144 | ID=Msa1399000;Name=Msa1399000 |
| tig0022328 | mRNA | 26144 | 29386 | 26144 | ID=Msa1399000-mRNA-1;Parent=Msa1399000;Name=Msa1399000-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0|0|0.83|1|1|6|0|517 |
| tig0022328 | exon | 26144 | 26246 | 26144 | ID=Msa1399000-mRNA-1:exon:16905;Parent=Msa1399000-mRNA-1 |
| tig0022328 | exon | 26864 | 27016 | 26864 | ID=Msa1399000-mRNA-1:exon:16906;Parent=Msa1399000-mRNA-1 |
| tig0022328 | exon | 27110 | 27496 | 27110 | ID=Msa1399000-mRNA-1:exon:16907;Parent=Msa1399000-mRNA-1 |
| tig0022328 | exon | 27594 | 27634 | 27594 | ID=Msa1399000-mRNA-1:exon:16908;Parent=Msa1399000-mRNA-1 |
| tig0022328 | exon | 28375 | 29190 | 28375 | ID=Msa1399000-mRNA-1:exon:16909;Parent=Msa1399000-mRNA-1 |
| tig0022328 | exon | 29333 | 29386 | 29333 | ID=Msa1399000-mRNA-1:exon:16910;Parent=Msa1399000-mRNA-1 |
| tig0022328 | CDS | 26144 | 26246 | 26144 | ID=Msa1399000-mRNA-1:cds;Parent=Msa1399000-mRNA-1 |
| tig0022328 | CDS | 26864 | 27016 | 26864 | ID=Msa1399000-mRNA-1:cds;Parent=Msa1399000-mRNA-1 |
| tig0022328 | CDS | 27110 | 27496 | 27110 | ID=Msa1399000-mRNA-1:cds;Parent=Msa1399000-mRNA-1 |
| tig0022328 | CDS | 27594 | 27634 | 27594 | ID=Msa1399000-mRNA-1:cds;Parent=Msa1399000-mRNA-1 |
| tig0022328 | CDS | 28375 | 29190 | 28375 | ID=Msa1399000-mRNA-1:cds;Parent=Msa1399000-mRNA-1 |
| tig0022328 | CDS | 29333 | 29386 | 29333 | ID=Msa1399000-mRNA-1:cds;Parent=Msa1399000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
