AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1400150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400150 MtrunA17_Chr4g0036071 83.636 55 9 0 1 55 348 402 1.57e-22 89.0
Msa1400150 MtrunA17_Chr2g0306581 83.333 48 8 0 1 48 1 48 3.51e-21 80.1
Msa1400150 MtrunA17_Chr2g0329551 69.091 55 17 0 1 55 209 263 4.95e-18 76.3
Msa1400150 MtrunA17_Chr6g0463571 72.549 51 14 0 1 51 139 189 1.85e-17 73.9
Msa1400150 MtrunA17_Chr5g0432701 69.091 55 17 0 1 55 147 201 2.50e-17 73.9
Msa1400150 MtrunA17_Chr3g0107491 69.091 55 17 0 1 55 165 219 3.79e-17 73.6
Msa1400150 MtrunA17_Chr1g0156051 77.778 45 10 0 1 45 375 419 2.15e-15 68.9
Msa1400150 MtrunA17_Chr3g0128781 60.000 55 22 0 1 55 96 150 2.20e-15 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400150 AT4G38900.2 76.364 55 13 0 1 55 382 436 3.13e-21 85.9
Msa1400150 AT4G38900.3 76.364 55 13 0 1 55 382 436 3.13e-21 85.9
Msa1400150 AT2G21230.4 75.926 54 13 0 2 55 359 412 6.82e-20 82.0
Msa1400150 AT2G21230.1 75.926 54 13 0 2 55 359 412 6.82e-20 82.0
Msa1400150 AT2G21230.3 75.926 54 13 0 2 55 359 412 7.33e-20 82.0
Msa1400150 AT2G21230.2 75.926 54 13 0 2 55 359 412 2.53e-19 80.5
Msa1400150 AT4G38900.1 68.852 61 13 1 1 55 382 442 6.34e-19 79.3
Msa1400150 AT2G40620.1 70.909 55 16 0 1 55 136 190 1.58e-18 77.8
Msa1400150 AT2G31370.5 67.273 55 18 0 1 55 189 243 4.04e-17 73.9
Msa1400150 AT2G31370.2 67.273 55 18 0 1 55 189 243 4.75e-17 73.9
Msa1400150 AT2G31370.4 67.273 55 18 0 1 55 189 243 4.75e-17 73.9
Msa1400150 AT2G31370.1 67.273 55 18 0 1 55 189 243 4.75e-17 73.9
Msa1400150 AT2G31370.7 67.273 55 18 0 1 55 189 243 4.75e-17 73.9
Msa1400150 AT2G31370.3 67.273 55 18 0 1 55 189 243 4.75e-17 73.9
Msa1400150 AT2G31370.6 67.273 55 18 0 1 55 189 243 4.75e-17 73.9
Msa1400150 AT1G06070.1 70.588 51 15 0 5 55 202 252 5.69e-17 73.6
Msa1400150 AT1G06850.2 67.273 55 18 0 1 55 136 190 1.04e-16 71.6
Msa1400150 AT1G43700.1 63.636 55 20 0 1 55 182 236 1.84e-16 72.0
Msa1400150 AT1G06850.1 67.273 55 18 0 1 55 136 190 2.73e-16 71.6

Find 85 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGGTTATTTCAGGATTT+TGG 0.101232 tig0022418:-44453 Msa1400150:intron
GGACCTTAGCAAACTGTATT+TGG 0.168656 tig0022418:-43392 Msa1400150:three_prime_UTR
GCTTAAGATGCGATATATTT+TGG 0.170519 tig0022418:-44399 Msa1400150:CDS
ATTTGGAAAATAAATTTATA+AGG 0.205498 tig0022418:-43375 Msa1400150:three_prime_UTR
AATAAATTTATAAGGGGAAT+TGG 0.239221 tig0022418:-43367 Msa1400150:three_prime_UTR
TTAACTTTGGCCACCTTTAC+GGG 0.250012 tig0022418:-43677 Msa1400150:three_prime_UTR
GTTAACTTTGGCCACCTTTA+CGG 0.255562 tig0022418:-43678 Msa1400150:three_prime_UTR
CGGTGAATCACCTACCTCTT+TGG 0.270020 tig0022418:-45491 Msa1400150:five_prime_UTR
TGCTACCAACACTGCTTTCT+CGG 0.281836 tig0022418:+44258 None:intergenic
GCAGTTGGGAAGATGTTTAT+TGG 0.300650 tig0022418:+45736 None:intergenic
GGAAGATGTTTATTGGTAAC+AGG 0.305476 tig0022418:+45743 None:intergenic
TACCCTATGCACAACCTTCT+AGG 0.309236 tig0022418:-43639 Msa1400150:three_prime_UTR
TTTGGAAAATAAATTTATAA+GGG 0.316986 tig0022418:-43374 Msa1400150:three_prime_UTR
GGATTGTAATCTTGAACTTC+AGG 0.321521 tig0022418:+44086 None:intergenic
GTGATTCACCGAATCGAGTT+AGG 0.324969 tig0022418:+45503 None:intergenic
TTCGGAGTTGAAGAAAATTA+TGG 0.328298 tig0022418:-44601 Msa1400150:exon
AAATTGTTAAAGAGCTTTGT+AGG 0.344037 tig0022418:-43413 Msa1400150:three_prime_UTR
AACACTGCTTTCTCGGTTCT+AGG 0.357024 tig0022418:+44265 None:intergenic
GCAACGGCACAACGAATTCT+TGG 0.368486 tig0022418:+44146 None:intergenic
GAGGTGTCATATTCTGAAAT+TGG 0.368658 tig0022418:+44327 None:intergenic
ATAAATTTATAAGGGGAATT+GGG 0.372298 tig0022418:-43366 Msa1400150:three_prime_UTR
ATCTAATGATTATAATCAAC+TGG 0.374871 tig0022418:+43477 None:intergenic
TTTCTGAAATGCCTTCAGTT+TGG 0.388967 tig0022418:-43275 Msa1400150:three_prime_UTR
GCATGGAAATTTGTTAACTT+TGG 0.389773 tig0022418:-43690 Msa1400150:three_prime_UTR
AAAATAATACCTGGCCTTTG+TGG 0.394261 tig0022418:+44047 None:intergenic
TTCATCGTGGTTTGTCTCAC+CGG 0.399368 tig0022418:-45448 Msa1400150:five_prime_UTR
ACAATTCAATACAAAATGAA+TGG 0.430281 tig0022418:+45696 None:intergenic
ATTGAAGGTCTTGTTGTGTT+TGG 0.431019 tig0022418:+43574 None:intergenic
AATAGATGCAGTGCCCTAGA+AGG 0.445549 tig0022418:+43625 None:intergenic
CTCAAAACCCTAACTCGATT+CGG 0.452533 tig0022418:-45511 Msa1400150:five_prime_UTR
TTCAAGATTACAATCCCATA+TGG 0.457081 tig0022418:-44079 Msa1400150:three_prime_UTR
CTATTCAGTTCCTTTGTGAA+TGG 0.458037 tig0022418:-43607 Msa1400150:three_prime_UTR
TTGTGGAACCAAGCTCCATA+TGG 0.461206 tig0022418:+44064 None:intergenic
TCAGTTCCTTTGTGAATGGC+AGG 0.462751 tig0022418:-43603 Msa1400150:three_prime_UTR
ACAGCGAGTTTACCTTTGAC+AGG 0.463284 tig0022418:+45403 None:intergenic
ATATCGCATCTTAAGCTCAA+TGG 0.469206 tig0022418:+44406 None:intergenic
TGATTCACCGAATCGAGTTA+GGG 0.473094 tig0022418:+45504 None:intergenic
CAGCACCTCTTAGCTCGCTT+CGG 0.474909 tig0022418:+44543 None:intergenic
GAATTCGTTGTGCCGTTGCT+AGG 0.480369 tig0022418:-44142 Msa1400150:three_prime_UTR
TTAGACTGAGAAGAATGCTT+CGG 0.481879 tig0022418:-44619 Msa1400150:intron
GCCCTAGAAGGTTGTGCATA+GGG 0.481985 tig0022418:+43637 None:intergenic
TGTGGAACCAAGCTCCATAT+GGG 0.483074 tig0022418:+44065 None:intergenic
AAATTGTGTAAAGAACAATA+TGG 0.484537 tig0022418:+43298 None:intergenic
GAAAGTTGCTGAGATTGTTA+TGG 0.484882 tig0022418:-44571 Msa1400150:CDS
ACCCTATGCACAACCTTCTA+GGG 0.485272 tig0022418:-43638 Msa1400150:three_prime_UTR
ACAACAAGACCTTCAATTGA+AGG 0.487972 tig0022418:-43568 Msa1400150:three_prime_UTR
CTATGTGTAGGATGGAGGTT+TGG 0.488964 tig0022418:-43722 Msa1400150:intron
GGAGGACGAAGATGCGAAAC+CGG 0.489146 tig0022418:+45429 None:intergenic
TTTACGGGGAGCAGCTCATA+TGG 0.493055 tig0022418:-43662 Msa1400150:three_prime_UTR
CAATTCAATACAAAATGAAT+GGG 0.495844 tig0022418:+45697 None:intergenic
TTCCACATGTTATATACAGT+TGG 0.506432 tig0022418:+43517 None:intergenic
ATCAGAGTCTCAATGCAGTT+GGG 0.512214 tig0022418:+45722 None:intergenic
AATCAGAGTCTCAATGCAGT+TGG 0.516569 tig0022418:+45721 None:intergenic
TTACAATCCCATATGGAGCT+TGG 0.521352 tig0022418:-44072 Msa1400150:three_prime_UTR
TTTCCAAATACAGTTTGCTA+AGG 0.524653 tig0022418:+43389 None:intergenic
GTTCAGACTCTGAAGACTGA+AGG 0.542615 tig0022418:-44362 Msa1400150:CDS
TCGTCCTCCGTCCCTGTCAA+AGG 0.545355 tig0022418:-45415 Msa1400150:intron
TTGGAAAATAAATTTATAAG+GGG 0.545493 tig0022418:-43373 Msa1400150:three_prime_UTR
ATATGAGCTGCTCCCCGTAA+AGG 0.545844 tig0022418:+43664 None:intergenic
AGGTTTGGCAACTTTGAGCA+TGG 0.546338 tig0022418:-43707 Msa1400150:three_prime_UTR
TGCCCTAGAAGGTTGTGCAT+AGG 0.562054 tig0022418:+43636 None:intergenic
CATATCTATGTGTAGGATGG+AGG 0.564335 tig0022418:-43727 Msa1400150:intron
ATTACCTGTGAGGAGGAAAA+CGG 0.580405 tig0022418:+45640 None:intergenic
AGCTTGGTTCCACAAAGGCC+AGG 0.580658 tig0022418:-44056 Msa1400150:intron
CTGATCCGAAGCGAGCTAAG+AGG 0.581733 tig0022418:-44548 Msa1400150:intron
TTCAGACTCTGAAGACTGAA+GGG 0.583079 tig0022418:-44361 Msa1400150:CDS
CAGCGAGTTTACCTTTGACA+GGG 0.588627 tig0022418:+45404 None:intergenic
TGCCAACTGTATATAACATG+TGG 0.599624 tig0022418:-43519 Msa1400150:three_prime_UTR
TGAAGCAAACTCAGCAAGAG+AGG 0.601941 tig0022418:+44308 None:intergenic
CGAAAACTGATCCAAACTGA+AGG 0.608245 tig0022418:+43264 None:intergenic
GAGTTTACCTTTGACAGGGA+CGG 0.609469 tig0022418:+45408 None:intergenic
CGCCGAGATTACCTGTGAGG+AGG 0.613925 tig0022418:+45633 None:intergenic
TAACTTTGGCCACCTTTACG+GGG 0.615462 tig0022418:-43676 Msa1400150:three_prime_UTR
TTTACCTTTGACAGGGACGG+AGG 0.619960 tig0022418:+45411 None:intergenic
CAATCTCCTGCCATTCACAA+AGG 0.622463 tig0022418:+43597 None:intergenic
TGAGCTGCTCCCCGTAAAGG+TGG 0.627202 tig0022418:+43667 None:intergenic
TCAGAGCAAACCAAAGAGGT+AGG 0.627547 tig0022418:+45481 None:intergenic
GTGAGACAAACCACGATGAA+CGG 0.631636 tig0022418:+45451 None:intergenic
CTACATTGGTAACATACACA+CGG 0.650580 tig0022418:-45768 Msa1400150:five_prime_UTR
TGATCGATCACCGTTCATCG+TGG 0.658192 tig0022418:-45461 Msa1400150:five_prime_UTR
TCGATCAGAGCAAACCAAAG+AGG 0.661369 tig0022418:+45477 None:intergenic
TATGGAGCTTGGTTCCACAA+AGG 0.680414 tig0022418:-44061 Msa1400150:three_prime_UTR
TGGCGCCGAGATTACCTGTG+AGG 0.706032 tig0022418:+45630 None:intergenic
AGTGCTCGAGAACCTAGCAA+CGG 0.707214 tig0022418:+44130 None:intergenic
ACCTGTGAGGAGGAAAACGG+TGG 0.736957 tig0022418:+45643 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGGAAAATAAATTTATA+AGG - tig0022418:45590-45609 Msa1400150:intron 10.0%
!! TTTGGAAAATAAATTTATAA+GGG - tig0022418:45591-45610 Msa1400150:intron 10.0%
!! ATCATAAAAAATAAAATGAA+TGG + tig0022418:45638-45657 None:intergenic 10.0%
!! AAAAACATTTAAACTTCATA+AGG + tig0022418:44060-44079 None:intergenic 15.0%
!!! ATTTAACTTGGATATTTTTT+TGG - tig0022418:44494-44513 Msa1400150:intron 15.0%
!!! TTTAACTTGGATATTTTTTT+GGG - tig0022418:44495-44514 Msa1400150:intron 15.0%
!! AGAAATGATCAATAAAAATT+TGG + tig0022418:44739-44758 None:intergenic 15.0%
!! TTGGAAAATAAATTTATAAG+GGG - tig0022418:45592-45611 Msa1400150:intron 15.0%
!! CAATTCAATACAAAATGAAT+GGG + tig0022418:43271-43290 None:intergenic 20.0%
!! ACAATTCAATACAAAATGAA+TGG + tig0022418:43272-43291 None:intergenic 20.0%
!!! ATAACTAATTTTCATTTTGC+TGG - tig0022418:43862-43881 Msa1400150:intron 20.0%
!!! CATCATTAGTTTTATGATTT+TGG - tig0022418:43946-43965 Msa1400150:intron 20.0%
!!! TTGTGATTTATGTGTATTTT+AGG - tig0022418:44078-44097 Msa1400150:three_prime_UTR 20.0%
!!! TTTATGTGTATTTTAGGATA+AGG - tig0022418:44084-44103 Msa1400150:three_prime_UTR 20.0%
!! TTTAGTTAGTAATGTCAATA+TGG - tig0022418:44464-44483 Msa1400150:intron 20.0%
!!! ATATTTTTTTGGGTTATTTC+AGG - tig0022418:44505-44524 Msa1400150:intron 20.0%
!! GTGTTAAATTATTATGACAA+CGG - tig0022418:44793-44812 Msa1400150:intron 20.0%
!! CTGTTAAAAAAAATAATACC+TGG + tig0022418:44930-44949 None:intergenic 20.0%
!! TAACTTAGTATTCTATAGTA+TGG - tig0022418:44977-44996 Msa1400150:intron 20.0%
!! ATTGAAGGATGAAAAAAAAA+TGG - tig0022418:45412-45431 Msa1400150:intron 20.0%
!! TTGAAGGATGAAAAAAAAAT+GGG - tig0022418:45413-45432 Msa1400150:intron 20.0%
!! ATCTAATGATTATAATCAAC+TGG + tig0022418:45491-45510 None:intergenic 20.0%
!! AATAAATTTATAAGGGGAAT+TGG - tig0022418:45598-45617 Msa1400150:intron 20.0%
!! ATAAATTTATAAGGGGAATT+GGG - tig0022418:45599-45618 Msa1400150:intron 20.0%
!! AAATTGTGTAAAGAACAATA+TGG + tig0022418:45670-45689 None:intergenic 20.0%
!!! ATTTTAAGAATGTTGTTGAT+TGG + tig0022418:45734-45753 None:intergenic 20.0%
! TGACAGTAGACAAAAAAATT+AGG + tig0022418:43703-43722 None:intergenic 25.0%
!!! TTTACTGCTCTTATTTTACT+TGG - tig0022418:44217-44236 Msa1400150:intron 25.0%
! CATCAAAATTAGTTCAAATC+AGG + tig0022418:44260-44279 None:intergenic 25.0%
!!! TTGAACTAATTTTGATGTCT+TGG - tig0022418:44263-44282 Msa1400150:intron 25.0%
! TATGGATGGTTAATTTAACT+TGG - tig0022418:44482-44501 Msa1400150:intron 25.0%
!!! ATTTTTCGAAATGCAGAAAA+TGG + tig0022418:44958-44977 None:intergenic 25.0%
!!! TTTTTTCATCCTTCAATTGA+AGG + tig0022418:45409-45428 None:intergenic 25.0%
!! AAATTGTTAAAGAGCTTTGT+AGG - tig0022418:45552-45571 Msa1400150:intron 25.0%
!! CATAAGGTACTTTTCTAACA+TGG + tig0022418:44044-44063 None:intergenic 30.0%
ACAATGTGTGCTTACAATAT+GGG - tig0022418:44154-44173 Msa1400150:three_prime_UTR 30.0%
TTCGGAGTTGAAGAAAATTA+TGG - tig0022418:44364-44383 Msa1400150:CDS 30.0%
GTTAGTAATGTCAATATGGA+TGG - tig0022418:44468-44487 Msa1400150:intron 30.0%
!! TTTGGGTTATTTCAGGATTT+TGG - tig0022418:44512-44531 Msa1400150:intron 30.0%
! GCTTAAGATGCGATATATTT+TGG - tig0022418:44566-44585 Msa1400150:CDS 30.0%
! ATTAGCTTCTTAGTAATCAG+AGG + tig0022418:44770-44789 None:intergenic 30.0%
TTCAAGATTACAATCCCATA+TGG - tig0022418:44886-44905 Msa1400150:intron 30.0%
TTGTCACTGTTGTCAAATAA+AGG - tig0022418:45044-45063 Msa1400150:intron 30.0%
TTGTCAAATAAAGGCTATAG+TGG - tig0022418:45053-45072 Msa1400150:intron 30.0%
!! GCATGGAAATTTGTTAACTT+TGG - tig0022418:45275-45294 Msa1400150:intron 30.0%
TTCCACATGTTATATACAGT+TGG + tig0022418:45451-45470 None:intergenic 30.0%
!! TTTCCAAATACAGTTTGCTA+AGG + tig0022418:45579-45598 None:intergenic 30.0%
! GGAAGATGTTTATTGGTAAC+AGG + tig0022418:43225-43244 None:intergenic 35.0%
TCGAATGGAGCTAAAATTGA+AGG + tig0022418:43428-43447 None:intergenic 35.0%
!!! GGTTTTGAGAGAAAATCGAA+TGG + tig0022418:43443-43462 None:intergenic 35.0%
AAGGTGAAAGAAAGAAAGCA+AGG + tig0022418:43595-43614 None:intergenic 35.0%
TTGCTTTCTTTCTTTCACCT+TGG - tig0022418:43594-43613 Msa1400150:three_prime_UTR 35.0%
! GCTTTTCGTGTTGAAAAGAA+TGG - tig0022418:43616-43635 Msa1400150:three_prime_UTR 35.0%
TGTCACAACATGTCTTTCTT+AGG - tig0022418:43718-43737 Msa1400150:intron 35.0%
! AGGTACTTTTCTAACATGGT+AGG + tig0022418:44040-44059 None:intergenic 35.0%
GACAATGTGTGCTTACAATA+TGG - tig0022418:44153-44172 Msa1400150:three_prime_UTR 35.0%
TTAGACTGAGAAGAATGCTT+CGG - tig0022418:44346-44365 Msa1400150:CDS 35.0%
GAAAGTTGCTGAGATTGTTA+TGG - tig0022418:44394-44413 Msa1400150:CDS 35.0%
!!! ATTTCAGGATTTTGGCTAAC+AGG - tig0022418:44520-44539 Msa1400150:intron 35.0%
ATATCGCATCTTAAGCTCAA+TGG + tig0022418:44562-44581 None:intergenic 35.0%
!!! TATTTTGGAGCTAGAACACA+AGG - tig0022418:44581-44600 Msa1400150:CDS 35.0%
!! GAGGTGTCATATTCTGAAAT+TGG + tig0022418:44641-44660 None:intergenic 35.0%
GGATTGTAATCTTGAACTTC+AGG + tig0022418:44882-44901 None:intergenic 35.0%
! AAAATAATACCTGGCCTTTG+TGG + tig0022418:44921-44940 None:intergenic 35.0%
TGCATTGCATATCTATGTGT+AGG - tig0022418:45231-45250 Msa1400150:intron 35.0%
TTGCATATCTATGTGTAGGA+TGG - tig0022418:45235-45254 Msa1400150:intron 35.0%
CTATTCAGTTCCTTTGTGAA+TGG - tig0022418:45358-45377 Msa1400150:intron 35.0%
!! ATTGAAGGTCTTGTTGTGTT+TGG + tig0022418:45394-45413 None:intergenic 35.0%
ACAACAAGACCTTCAATTGA+AGG - tig0022418:45397-45416 Msa1400150:intron 35.0%
TGCCAACTGTATATAACATG+TGG - tig0022418:45446-45465 Msa1400150:five_prime_UTR 35.0%
!! TTTCTGAAATGCCTTCAGTT+TGG - tig0022418:45690-45709 Msa1400150:five_prime_UTR 35.0%
GCAGTTGGGAAGATGTTTAT+TGG + tig0022418:43232-43251 None:intergenic 40.0%
ATCAGAGTCTCAATGCAGTT+GGG + tig0022418:43246-43265 None:intergenic 40.0%
AATCAGAGTCTCAATGCAGT+TGG + tig0022418:43247-43266 None:intergenic 40.0%
ATTACCTGTGAGGAGGAAAA+CGG + tig0022418:43328-43347 None:intergenic 40.0%
CTCAAAACCCTAACTCGATT+CGG - tig0022418:43454-43473 Msa1400150:three_prime_UTR 40.0%
TGATTCACCGAATCGAGTTA+GGG + tig0022418:43464-43483 None:intergenic 40.0%
! CTTTTCAACACGAAAAGCCA+AGG + tig0022418:43614-43633 None:intergenic 40.0%
! ACCTTGTTATGCTTGTGTAG+GGG + tig0022418:43778-43797 None:intergenic 40.0%
! CACCTTGTTATGCTTGTGTA+GGG + tig0022418:43779-43798 None:intergenic 40.0%
CTACACAAGCATAACAAGGT+GGG - tig0022418:43778-43797 Msa1400150:intron 40.0%
GCTTAACTAATTGTGCAGGT+TGG + tig0022418:44016-44035 None:intergenic 40.0%
AGGAGCTTAACTAATTGTGC+AGG + tig0022418:44020-44039 None:intergenic 40.0%
TAAGGCTCCATTCATTGCTA+AGG - tig0022418:44102-44121 Msa1400150:three_prime_UTR 40.0%
!!! GATTTTGGCTAACAGGCAAT+CGG - tig0022418:44527-44546 Msa1400150:intron 40.0%
! TTCAGACTCTGAAGACTGAA+GGG - tig0022418:44604-44623 Msa1400150:exon 40.0%
TTACAATCCCATATGGAGCT+TGG - tig0022418:44893-44912 Msa1400150:intron 40.0%
! GACAAAAACCACTGCTGATT+AGG + tig0022418:45029-45048 None:intergenic 40.0%
!! ACCATTATTTCTGCGATTCG+TGG - tig0022418:45170-45189 Msa1400150:intron 40.0%
ACCACGAATCGCAGAAATAA+TGG + tig0022418:45174-45193 None:intergenic 40.0%
CATATCTATGTGTAGGATGG+AGG - tig0022418:45238-45257 Msa1400150:intron 40.0%
GTTAACTTTGGCCACCTTTA+CGG - tig0022418:45287-45306 Msa1400150:intron 40.0%
TTAACTTTGGCCACCTTTAC+GGG - tig0022418:45288-45307 Msa1400150:intron 40.0%
GGACCTTAGCAAACTGTATT+TGG - tig0022418:45573-45592 Msa1400150:intron 40.0%
CGAAAACTGATCCAAACTGA+AGG + tig0022418:45704-45723 None:intergenic 40.0%
TTCCTCCTCACAGGTAATCT+CGG - tig0022418:43330-43349 Msa1400150:three_prime_UTR 45.0%
GAAGAAGGAGGTGATGCTAT+CGG + tig0022418:43368-43387 None:intergenic 45.0%
ATAGCATCACCTCCTTCTTC+CGG - tig0022418:43368-43387 Msa1400150:three_prime_UTR 45.0%
ATAGATGCATATGACGTCGC+CGG + tig0022418:43390-43409 None:intergenic 45.0%
GTGATTCACCGAATCGAGTT+AGG + tig0022418:43465-43484 None:intergenic 45.0%
TCAGAGCAAACCAAAGAGGT+AGG + tig0022418:43487-43506 None:intergenic 45.0%
TCGATCAGAGCAAACCAAAG+AGG + tig0022418:43491-43510 None:intergenic 45.0%
GTGAGACAAACCACGATGAA+CGG + tig0022418:43517-43536 None:intergenic 45.0%
! TTCATCGTGGTTTGTCTCAC+CGG - tig0022418:43517-43536 Msa1400150:three_prime_UTR 45.0%
GAGTTTACCTTTGACAGGGA+CGG + tig0022418:43560-43579 None:intergenic 45.0%
CAGCGAGTTTACCTTTGACA+GGG + tig0022418:43564-43583 None:intergenic 45.0%
ACAGCGAGTTTACCTTTGAC+AGG + tig0022418:43565-43584 None:intergenic 45.0%
TCTTAGGCTGCTGAGAATGA+TGG - tig0022418:43734-43753 Msa1400150:intron 45.0%
! CCACCTTGTTATGCTTGTGT+AGG + tig0022418:43780-43799 None:intergenic 45.0%
CCTACACAAGCATAACAAGG+TGG - tig0022418:43777-43796 Msa1400150:intron 45.0%
TGCTGGCAGATCGAAACTTA+TGG - tig0022418:43879-43898 Msa1400150:intron 45.0%
CTCCATTCATTGCTAAGGCT+GGG - tig0022418:44107-44126 Msa1400150:three_prime_UTR 45.0%
TTCCCAGCCTTAGCAATGAA+TGG + tig0022418:44112-44131 None:intergenic 45.0%
TTGGACTGAGAAGACTGCTT+CGG - tig0022418:44282-44301 Msa1400150:exon 45.0%
! GTTCAGACTCTGAAGACTGA+AGG - tig0022418:44603-44622 Msa1400150:exon 45.0%
TGAAGCAAACTCAGCAAGAG+AGG + tig0022418:44660-44679 None:intergenic 45.0%
AACACTGCTTTCTCGGTTCT+AGG + tig0022418:44703-44722 None:intergenic 45.0%
TAGAACCGAGAAAGCAGTGT+TGG - tig0022418:44702-44721 Msa1400150:intron 45.0%
TGCTACCAACACTGCTTTCT+CGG + tig0022418:44710-44729 None:intergenic 45.0%
TGTGGAACCAAGCTCCATAT+GGG + tig0022418:44903-44922 None:intergenic 45.0%
TTGTGGAACCAAGCTCCATA+TGG + tig0022418:44904-44923 None:intergenic 45.0%
TATGGAGCTTGGTTCCACAA+AGG - tig0022418:44904-44923 Msa1400150:intron 45.0%
! CCACTGCTGATTAGGAAAAC+TGG + tig0022418:45021-45040 None:intergenic 45.0%
! CCAGTTTTCCTAATCAGCAG+TGG - tig0022418:45018-45037 Msa1400150:intron 45.0%
CTATGTGTAGGATGGAGGTT+TGG - tig0022418:45243-45262 Msa1400150:intron 45.0%
AGGTTTGGCAACTTTGAGCA+TGG - tig0022418:45258-45277 Msa1400150:intron 45.0%
TAACTTTGGCCACCTTTACG+GGG - tig0022418:45289-45308 Msa1400150:intron 45.0%
TACCCTATGCACAACCTTCT+AGG - tig0022418:45326-45345 Msa1400150:intron 45.0%
ACCCTATGCACAACCTTCTA+GGG - tig0022418:45327-45346 Msa1400150:intron 45.0%
AATAGATGCAGTGCCCTAGA+AGG + tig0022418:45343-45362 None:intergenic 45.0%
TCAGTTCCTTTGTGAATGGC+AGG - tig0022418:45362-45381 Msa1400150:intron 45.0%
CAATCTCCTGCCATTCACAA+AGG + tig0022418:45371-45390 None:intergenic 45.0%
GTGATGCTATCGGAGGAAGA+TGG + tig0022418:43358-43377 None:intergenic 50.0%
CGGTGAATCACCTACCTCTT+TGG - tig0022418:43474-43493 Msa1400150:three_prime_UTR 50.0%
TGATCGATCACCGTTCATCG+TGG - tig0022418:43504-43523 Msa1400150:three_prime_UTR 50.0%
TTTACCTTTGACAGGGACGG+AGG + tig0022418:43557-43576 None:intergenic 50.0%
GCCCCTACACAAGCATAACA+AGG - tig0022418:43774-43793 Msa1400150:intron 50.0%
GCTCCATTCATTGCTAAGGC+TGG - tig0022418:44106-44125 Msa1400150:three_prime_UTR 50.0%
TGCTAAGGCTGGGAAGTTGA+AGG - tig0022418:44117-44136 Msa1400150:three_prime_UTR 50.0%
TAAGGCTGGGAAGTTGAAGG+AGG - tig0022418:44120-44139 Msa1400150:three_prime_UTR 50.0%
AAGACTGCTTCGGAGGAAGA+AGG - tig0022418:44292-44311 Msa1400150:CDS 50.0%
GCAACGGCACAACGAATTCT+TGG + tig0022418:44822-44841 None:intergenic 50.0%
! GAATTCGTTGTGCCGTTGCT+AGG - tig0022418:44823-44842 Msa1400150:intron 50.0%
AGTGCTCGAGAACCTAGCAA+CGG + tig0022418:44838-44857 None:intergenic 50.0%
TATAGTGGCGCTTTGCGTAG+TGG - tig0022418:45068-45087 Msa1400150:intron 50.0%
CGATTCGTGGTTGACATCAC+TGG - tig0022418:45183-45202 Msa1400150:intron 50.0%
ATATGAGCTGCTCCCCGTAA+AGG + tig0022418:45304-45323 None:intergenic 50.0%
TTTACGGGGAGCAGCTCATA+TGG - tig0022418:45303-45322 Msa1400150:intron 50.0%
GCCCTAGAAGGTTGTGCATA+GGG + tig0022418:45331-45350 None:intergenic 50.0%
TGCCCTAGAAGGTTGTGCAT+AGG + tig0022418:45332-45351 None:intergenic 50.0%
! ACCACCGTTTTCCTCCTCAC+AGG - tig0022418:43321-43340 Msa1400150:three_prime_UTR 55.0%
ACCTGTGAGGAGGAAAACGG+TGG + tig0022418:43325-43344 None:intergenic 55.0%
GAAGGAGGTGATGCTATCGG+AGG + tig0022418:43365-43384 None:intergenic 55.0%
CATATGACGTCGCCGGAAGA+AGG + tig0022418:43383-43402 None:intergenic 55.0%
GGAGGACGAAGATGCGAAAC+CGG + tig0022418:43539-43558 None:intergenic 55.0%
GACTGAGAAGACTGCTTCGG+AGG - tig0022418:44285-44304 Msa1400150:CDS 55.0%
CTGATCCGAAGCGAGCTAAG+AGG - tig0022418:44417-44436 Msa1400150:CDS 55.0%
CAGCACCTCTTAGCTCGCTT+CGG + tig0022418:44425-44444 None:intergenic 55.0%
AGCTTGGTTCCACAAAGGCC+AGG - tig0022418:44909-44928 Msa1400150:intron 55.0%
CGCCGAGATTACCTGTGAGG+AGG + tig0022418:43335-43354 None:intergenic 60.0%
! TGGCGCCGAGATTACCTGTG+AGG + tig0022418:43338-43357 None:intergenic 60.0%
ATGACGTCGCCGGAAGAAGG+AGG + tig0022418:43380-43399 None:intergenic 60.0%
TCGTCCTCCGTCCCTGTCAA+AGG - tig0022418:43550-43569 Msa1400150:three_prime_UTR 60.0%
TGAGCTGCTCCCCGTAAAGG+TGG + tig0022418:45301-45320 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0022418 gene 43200 45787 43200 ID=Msa1400150;Name=Msa1400150
tig0022418 mRNA 43200 45787 43200 ID=Msa1400150-mRNA-1;Parent=Msa1400150;Name=Msa1400150-mRNA-1;_AED=0.11;_eAED=0.11;_QI=310|0.8|0.83|1|0.4|0.33|6|668|77
tig0022418 exon 43200 43734 43200 ID=Msa1400150-mRNA-1:exon:17595;Parent=Msa1400150-mRNA-1
tig0022418 exon 44057 44174 44057 ID=Msa1400150-mRNA-1:exon:17594;Parent=Msa1400150-mRNA-1
tig0022418 exon 44268 44460 44268 ID=Msa1400150-mRNA-1:exon:17593;Parent=Msa1400150-mRNA-1
tig0022418 exon 44549 44637 44549 ID=Msa1400150-mRNA-1:exon:17592;Parent=Msa1400150-mRNA-1
tig0022418 exon 45416 45549 45416 ID=Msa1400150-mRNA-1:exon:17591;Parent=Msa1400150-mRNA-1
tig0022418 exon 45645 45787 45645 ID=Msa1400150-mRNA-1:exon:17590;Parent=Msa1400150-mRNA-1
tig0022418 five_prime_UTR 45645 45787 45645 ID=Msa1400150-mRNA-1:five_prime_utr;Parent=Msa1400150-mRNA-1
tig0022418 five_prime_UTR 45416 45549 45416 ID=Msa1400150-mRNA-1:five_prime_utr;Parent=Msa1400150-mRNA-1
tig0022418 five_prime_UTR 44605 44637 44605 ID=Msa1400150-mRNA-1:five_prime_utr;Parent=Msa1400150-mRNA-1
tig0022418 CDS 44549 44604 44549 ID=Msa1400150-mRNA-1:cds;Parent=Msa1400150-mRNA-1
tig0022418 CDS 44283 44460 44283 ID=Msa1400150-mRNA-1:cds;Parent=Msa1400150-mRNA-1
tig0022418 three_prime_UTR 44268 44282 44268 ID=Msa1400150-mRNA-1:three_prime_utr;Parent=Msa1400150-mRNA-1
tig0022418 three_prime_UTR 44057 44174 44057 ID=Msa1400150-mRNA-1:three_prime_utr;Parent=Msa1400150-mRNA-1
tig0022418 three_prime_UTR 43200 43734 43200 ID=Msa1400150-mRNA-1:three_prime_utr;Parent=Msa1400150-mRNA-1
Gene Sequence

>Msa1400150

ATGGCTAATGAGAAAGTTGCTGAGATTGTTATGGCTGATCCGAAGCGAGCTAAGAGGATTTTGGCTAACAGGCAATCGGCTGCGCGTTCCATTGAGCTTAAGATGCGATATATTTTGGAGCTAGAACACAAGGTTCAGACTCTGAAGACTGAAGGGTTGTTTCTTCTCCAATTTCAGAATATGACACCTCTCTTGCTGAGTTTGCTTCAACAATTGTTGAGTTATGAAGCCTAG

Protein sequence

>Msa1400150

MANEKVAEIVMADPKRAKRILANRQSAARSIELKMRYILELEHKVQTLKTEGLFLLQFQNMTPLLLSLLQQLLSYEA*