Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1400150 | KAE8668159.1 | 83.636 | 55 | 9 | 0 | 1 | 55 | 5 | 59 | 8.04e-22 | 93.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1400150 | sp|Q8H1F0|BZP29_ARATH | 76.364 | 55 | 13 | 0 | 1 | 55 | 382 | 436 | 3.08e-20 | 85.9 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1400150 | A0A6A2Y5V5 | 83.636 | 55 | 9 | 0 | 1 | 55 | 5 | 59 | 3.84e-22 | 93.6 |
Gene ID | Type | Classification |
---|---|---|
Msa1400150 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1400150 | MtrunA17_Chr4g0036071 | 83.636 | 55 | 9 | 0 | 1 | 55 | 348 | 402 | 1.57e-22 | 89.0 |
Msa1400150 | MtrunA17_Chr2g0306581 | 83.333 | 48 | 8 | 0 | 1 | 48 | 1 | 48 | 3.51e-21 | 80.1 |
Msa1400150 | MtrunA17_Chr2g0329551 | 69.091 | 55 | 17 | 0 | 1 | 55 | 209 | 263 | 4.95e-18 | 76.3 |
Msa1400150 | MtrunA17_Chr6g0463571 | 72.549 | 51 | 14 | 0 | 1 | 51 | 139 | 189 | 1.85e-17 | 73.9 |
Msa1400150 | MtrunA17_Chr5g0432701 | 69.091 | 55 | 17 | 0 | 1 | 55 | 147 | 201 | 2.50e-17 | 73.9 |
Msa1400150 | MtrunA17_Chr3g0107491 | 69.091 | 55 | 17 | 0 | 1 | 55 | 165 | 219 | 3.79e-17 | 73.6 |
Msa1400150 | MtrunA17_Chr1g0156051 | 77.778 | 45 | 10 | 0 | 1 | 45 | 375 | 419 | 2.15e-15 | 68.9 |
Msa1400150 | MtrunA17_Chr3g0128781 | 60.000 | 55 | 22 | 0 | 1 | 55 | 96 | 150 | 2.20e-15 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1400150 | AT4G38900.2 | 76.364 | 55 | 13 | 0 | 1 | 55 | 382 | 436 | 3.13e-21 | 85.9 |
Msa1400150 | AT4G38900.3 | 76.364 | 55 | 13 | 0 | 1 | 55 | 382 | 436 | 3.13e-21 | 85.9 |
Msa1400150 | AT2G21230.4 | 75.926 | 54 | 13 | 0 | 2 | 55 | 359 | 412 | 6.82e-20 | 82.0 |
Msa1400150 | AT2G21230.1 | 75.926 | 54 | 13 | 0 | 2 | 55 | 359 | 412 | 6.82e-20 | 82.0 |
Msa1400150 | AT2G21230.3 | 75.926 | 54 | 13 | 0 | 2 | 55 | 359 | 412 | 7.33e-20 | 82.0 |
Msa1400150 | AT2G21230.2 | 75.926 | 54 | 13 | 0 | 2 | 55 | 359 | 412 | 2.53e-19 | 80.5 |
Msa1400150 | AT4G38900.1 | 68.852 | 61 | 13 | 1 | 1 | 55 | 382 | 442 | 6.34e-19 | 79.3 |
Msa1400150 | AT2G40620.1 | 70.909 | 55 | 16 | 0 | 1 | 55 | 136 | 190 | 1.58e-18 | 77.8 |
Msa1400150 | AT2G31370.5 | 67.273 | 55 | 18 | 0 | 1 | 55 | 189 | 243 | 4.04e-17 | 73.9 |
Msa1400150 | AT2G31370.2 | 67.273 | 55 | 18 | 0 | 1 | 55 | 189 | 243 | 4.75e-17 | 73.9 |
Msa1400150 | AT2G31370.4 | 67.273 | 55 | 18 | 0 | 1 | 55 | 189 | 243 | 4.75e-17 | 73.9 |
Msa1400150 | AT2G31370.1 | 67.273 | 55 | 18 | 0 | 1 | 55 | 189 | 243 | 4.75e-17 | 73.9 |
Msa1400150 | AT2G31370.7 | 67.273 | 55 | 18 | 0 | 1 | 55 | 189 | 243 | 4.75e-17 | 73.9 |
Msa1400150 | AT2G31370.3 | 67.273 | 55 | 18 | 0 | 1 | 55 | 189 | 243 | 4.75e-17 | 73.9 |
Msa1400150 | AT2G31370.6 | 67.273 | 55 | 18 | 0 | 1 | 55 | 189 | 243 | 4.75e-17 | 73.9 |
Msa1400150 | AT1G06070.1 | 70.588 | 51 | 15 | 0 | 5 | 55 | 202 | 252 | 5.69e-17 | 73.6 |
Msa1400150 | AT1G06850.2 | 67.273 | 55 | 18 | 0 | 1 | 55 | 136 | 190 | 1.04e-16 | 71.6 |
Msa1400150 | AT1G43700.1 | 63.636 | 55 | 20 | 0 | 1 | 55 | 182 | 236 | 1.84e-16 | 72.0 |
Msa1400150 | AT1G06850.1 | 67.273 | 55 | 18 | 0 | 1 | 55 | 136 | 190 | 2.73e-16 | 71.6 |
Find 85 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGGGTTATTTCAGGATTT+TGG | 0.101232 | tig0022418:-44453 | Msa1400150:intron |
GGACCTTAGCAAACTGTATT+TGG | 0.168656 | tig0022418:-43392 | Msa1400150:three_prime_UTR |
GCTTAAGATGCGATATATTT+TGG | 0.170519 | tig0022418:-44399 | Msa1400150:CDS |
ATTTGGAAAATAAATTTATA+AGG | 0.205498 | tig0022418:-43375 | Msa1400150:three_prime_UTR |
AATAAATTTATAAGGGGAAT+TGG | 0.239221 | tig0022418:-43367 | Msa1400150:three_prime_UTR |
TTAACTTTGGCCACCTTTAC+GGG | 0.250012 | tig0022418:-43677 | Msa1400150:three_prime_UTR |
GTTAACTTTGGCCACCTTTA+CGG | 0.255562 | tig0022418:-43678 | Msa1400150:three_prime_UTR |
CGGTGAATCACCTACCTCTT+TGG | 0.270020 | tig0022418:-45491 | Msa1400150:five_prime_UTR |
TGCTACCAACACTGCTTTCT+CGG | 0.281836 | tig0022418:+44258 | None:intergenic |
GCAGTTGGGAAGATGTTTAT+TGG | 0.300650 | tig0022418:+45736 | None:intergenic |
GGAAGATGTTTATTGGTAAC+AGG | 0.305476 | tig0022418:+45743 | None:intergenic |
TACCCTATGCACAACCTTCT+AGG | 0.309236 | tig0022418:-43639 | Msa1400150:three_prime_UTR |
TTTGGAAAATAAATTTATAA+GGG | 0.316986 | tig0022418:-43374 | Msa1400150:three_prime_UTR |
GGATTGTAATCTTGAACTTC+AGG | 0.321521 | tig0022418:+44086 | None:intergenic |
GTGATTCACCGAATCGAGTT+AGG | 0.324969 | tig0022418:+45503 | None:intergenic |
TTCGGAGTTGAAGAAAATTA+TGG | 0.328298 | tig0022418:-44601 | Msa1400150:exon |
AAATTGTTAAAGAGCTTTGT+AGG | 0.344037 | tig0022418:-43413 | Msa1400150:three_prime_UTR |
AACACTGCTTTCTCGGTTCT+AGG | 0.357024 | tig0022418:+44265 | None:intergenic |
GCAACGGCACAACGAATTCT+TGG | 0.368486 | tig0022418:+44146 | None:intergenic |
GAGGTGTCATATTCTGAAAT+TGG | 0.368658 | tig0022418:+44327 | None:intergenic |
ATAAATTTATAAGGGGAATT+GGG | 0.372298 | tig0022418:-43366 | Msa1400150:three_prime_UTR |
ATCTAATGATTATAATCAAC+TGG | 0.374871 | tig0022418:+43477 | None:intergenic |
TTTCTGAAATGCCTTCAGTT+TGG | 0.388967 | tig0022418:-43275 | Msa1400150:three_prime_UTR |
GCATGGAAATTTGTTAACTT+TGG | 0.389773 | tig0022418:-43690 | Msa1400150:three_prime_UTR |
AAAATAATACCTGGCCTTTG+TGG | 0.394261 | tig0022418:+44047 | None:intergenic |
TTCATCGTGGTTTGTCTCAC+CGG | 0.399368 | tig0022418:-45448 | Msa1400150:five_prime_UTR |
ACAATTCAATACAAAATGAA+TGG | 0.430281 | tig0022418:+45696 | None:intergenic |
ATTGAAGGTCTTGTTGTGTT+TGG | 0.431019 | tig0022418:+43574 | None:intergenic |
AATAGATGCAGTGCCCTAGA+AGG | 0.445549 | tig0022418:+43625 | None:intergenic |
CTCAAAACCCTAACTCGATT+CGG | 0.452533 | tig0022418:-45511 | Msa1400150:five_prime_UTR |
TTCAAGATTACAATCCCATA+TGG | 0.457081 | tig0022418:-44079 | Msa1400150:three_prime_UTR |
CTATTCAGTTCCTTTGTGAA+TGG | 0.458037 | tig0022418:-43607 | Msa1400150:three_prime_UTR |
TTGTGGAACCAAGCTCCATA+TGG | 0.461206 | tig0022418:+44064 | None:intergenic |
TCAGTTCCTTTGTGAATGGC+AGG | 0.462751 | tig0022418:-43603 | Msa1400150:three_prime_UTR |
ACAGCGAGTTTACCTTTGAC+AGG | 0.463284 | tig0022418:+45403 | None:intergenic |
ATATCGCATCTTAAGCTCAA+TGG | 0.469206 | tig0022418:+44406 | None:intergenic |
TGATTCACCGAATCGAGTTA+GGG | 0.473094 | tig0022418:+45504 | None:intergenic |
CAGCACCTCTTAGCTCGCTT+CGG | 0.474909 | tig0022418:+44543 | None:intergenic |
GAATTCGTTGTGCCGTTGCT+AGG | 0.480369 | tig0022418:-44142 | Msa1400150:three_prime_UTR |
TTAGACTGAGAAGAATGCTT+CGG | 0.481879 | tig0022418:-44619 | Msa1400150:intron |
GCCCTAGAAGGTTGTGCATA+GGG | 0.481985 | tig0022418:+43637 | None:intergenic |
TGTGGAACCAAGCTCCATAT+GGG | 0.483074 | tig0022418:+44065 | None:intergenic |
AAATTGTGTAAAGAACAATA+TGG | 0.484537 | tig0022418:+43298 | None:intergenic |
GAAAGTTGCTGAGATTGTTA+TGG | 0.484882 | tig0022418:-44571 | Msa1400150:CDS |
ACCCTATGCACAACCTTCTA+GGG | 0.485272 | tig0022418:-43638 | Msa1400150:three_prime_UTR |
ACAACAAGACCTTCAATTGA+AGG | 0.487972 | tig0022418:-43568 | Msa1400150:three_prime_UTR |
CTATGTGTAGGATGGAGGTT+TGG | 0.488964 | tig0022418:-43722 | Msa1400150:intron |
GGAGGACGAAGATGCGAAAC+CGG | 0.489146 | tig0022418:+45429 | None:intergenic |
TTTACGGGGAGCAGCTCATA+TGG | 0.493055 | tig0022418:-43662 | Msa1400150:three_prime_UTR |
CAATTCAATACAAAATGAAT+GGG | 0.495844 | tig0022418:+45697 | None:intergenic |
TTCCACATGTTATATACAGT+TGG | 0.506432 | tig0022418:+43517 | None:intergenic |
ATCAGAGTCTCAATGCAGTT+GGG | 0.512214 | tig0022418:+45722 | None:intergenic |
AATCAGAGTCTCAATGCAGT+TGG | 0.516569 | tig0022418:+45721 | None:intergenic |
TTACAATCCCATATGGAGCT+TGG | 0.521352 | tig0022418:-44072 | Msa1400150:three_prime_UTR |
TTTCCAAATACAGTTTGCTA+AGG | 0.524653 | tig0022418:+43389 | None:intergenic |
GTTCAGACTCTGAAGACTGA+AGG | 0.542615 | tig0022418:-44362 | Msa1400150:CDS |
TCGTCCTCCGTCCCTGTCAA+AGG | 0.545355 | tig0022418:-45415 | Msa1400150:intron |
TTGGAAAATAAATTTATAAG+GGG | 0.545493 | tig0022418:-43373 | Msa1400150:three_prime_UTR |
ATATGAGCTGCTCCCCGTAA+AGG | 0.545844 | tig0022418:+43664 | None:intergenic |
AGGTTTGGCAACTTTGAGCA+TGG | 0.546338 | tig0022418:-43707 | Msa1400150:three_prime_UTR |
TGCCCTAGAAGGTTGTGCAT+AGG | 0.562054 | tig0022418:+43636 | None:intergenic |
CATATCTATGTGTAGGATGG+AGG | 0.564335 | tig0022418:-43727 | Msa1400150:intron |
ATTACCTGTGAGGAGGAAAA+CGG | 0.580405 | tig0022418:+45640 | None:intergenic |
AGCTTGGTTCCACAAAGGCC+AGG | 0.580658 | tig0022418:-44056 | Msa1400150:intron |
CTGATCCGAAGCGAGCTAAG+AGG | 0.581733 | tig0022418:-44548 | Msa1400150:intron |
TTCAGACTCTGAAGACTGAA+GGG | 0.583079 | tig0022418:-44361 | Msa1400150:CDS |
CAGCGAGTTTACCTTTGACA+GGG | 0.588627 | tig0022418:+45404 | None:intergenic |
TGCCAACTGTATATAACATG+TGG | 0.599624 | tig0022418:-43519 | Msa1400150:three_prime_UTR |
TGAAGCAAACTCAGCAAGAG+AGG | 0.601941 | tig0022418:+44308 | None:intergenic |
CGAAAACTGATCCAAACTGA+AGG | 0.608245 | tig0022418:+43264 | None:intergenic |
GAGTTTACCTTTGACAGGGA+CGG | 0.609469 | tig0022418:+45408 | None:intergenic |
CGCCGAGATTACCTGTGAGG+AGG | 0.613925 | tig0022418:+45633 | None:intergenic |
TAACTTTGGCCACCTTTACG+GGG | 0.615462 | tig0022418:-43676 | Msa1400150:three_prime_UTR |
TTTACCTTTGACAGGGACGG+AGG | 0.619960 | tig0022418:+45411 | None:intergenic |
CAATCTCCTGCCATTCACAA+AGG | 0.622463 | tig0022418:+43597 | None:intergenic |
TGAGCTGCTCCCCGTAAAGG+TGG | 0.627202 | tig0022418:+43667 | None:intergenic |
TCAGAGCAAACCAAAGAGGT+AGG | 0.627547 | tig0022418:+45481 | None:intergenic |
GTGAGACAAACCACGATGAA+CGG | 0.631636 | tig0022418:+45451 | None:intergenic |
CTACATTGGTAACATACACA+CGG | 0.650580 | tig0022418:-45768 | Msa1400150:five_prime_UTR |
TGATCGATCACCGTTCATCG+TGG | 0.658192 | tig0022418:-45461 | Msa1400150:five_prime_UTR |
TCGATCAGAGCAAACCAAAG+AGG | 0.661369 | tig0022418:+45477 | None:intergenic |
TATGGAGCTTGGTTCCACAA+AGG | 0.680414 | tig0022418:-44061 | Msa1400150:three_prime_UTR |
TGGCGCCGAGATTACCTGTG+AGG | 0.706032 | tig0022418:+45630 | None:intergenic |
AGTGCTCGAGAACCTAGCAA+CGG | 0.707214 | tig0022418:+44130 | None:intergenic |
ACCTGTGAGGAGGAAAACGG+TGG | 0.736957 | tig0022418:+45643 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTGGAAAATAAATTTATA+AGG | - | tig0022418:45590-45609 | Msa1400150:intron | 10.0% |
!! | TTTGGAAAATAAATTTATAA+GGG | - | tig0022418:45591-45610 | Msa1400150:intron | 10.0% |
!! | ATCATAAAAAATAAAATGAA+TGG | + | tig0022418:45638-45657 | None:intergenic | 10.0% |
!! | AAAAACATTTAAACTTCATA+AGG | + | tig0022418:44060-44079 | None:intergenic | 15.0% |
!!! | ATTTAACTTGGATATTTTTT+TGG | - | tig0022418:44494-44513 | Msa1400150:intron | 15.0% |
!!! | TTTAACTTGGATATTTTTTT+GGG | - | tig0022418:44495-44514 | Msa1400150:intron | 15.0% |
!! | AGAAATGATCAATAAAAATT+TGG | + | tig0022418:44739-44758 | None:intergenic | 15.0% |
!! | TTGGAAAATAAATTTATAAG+GGG | - | tig0022418:45592-45611 | Msa1400150:intron | 15.0% |
!! | CAATTCAATACAAAATGAAT+GGG | + | tig0022418:43271-43290 | None:intergenic | 20.0% |
!! | ACAATTCAATACAAAATGAA+TGG | + | tig0022418:43272-43291 | None:intergenic | 20.0% |
!!! | ATAACTAATTTTCATTTTGC+TGG | - | tig0022418:43862-43881 | Msa1400150:intron | 20.0% |
!!! | CATCATTAGTTTTATGATTT+TGG | - | tig0022418:43946-43965 | Msa1400150:intron | 20.0% |
!!! | TTGTGATTTATGTGTATTTT+AGG | - | tig0022418:44078-44097 | Msa1400150:three_prime_UTR | 20.0% |
!!! | TTTATGTGTATTTTAGGATA+AGG | - | tig0022418:44084-44103 | Msa1400150:three_prime_UTR | 20.0% |
!! | TTTAGTTAGTAATGTCAATA+TGG | - | tig0022418:44464-44483 | Msa1400150:intron | 20.0% |
!!! | ATATTTTTTTGGGTTATTTC+AGG | - | tig0022418:44505-44524 | Msa1400150:intron | 20.0% |
!! | GTGTTAAATTATTATGACAA+CGG | - | tig0022418:44793-44812 | Msa1400150:intron | 20.0% |
!! | CTGTTAAAAAAAATAATACC+TGG | + | tig0022418:44930-44949 | None:intergenic | 20.0% |
!! | TAACTTAGTATTCTATAGTA+TGG | - | tig0022418:44977-44996 | Msa1400150:intron | 20.0% |
!! | ATTGAAGGATGAAAAAAAAA+TGG | - | tig0022418:45412-45431 | Msa1400150:intron | 20.0% |
!! | TTGAAGGATGAAAAAAAAAT+GGG | - | tig0022418:45413-45432 | Msa1400150:intron | 20.0% |
!! | ATCTAATGATTATAATCAAC+TGG | + | tig0022418:45491-45510 | None:intergenic | 20.0% |
!! | AATAAATTTATAAGGGGAAT+TGG | - | tig0022418:45598-45617 | Msa1400150:intron | 20.0% |
!! | ATAAATTTATAAGGGGAATT+GGG | - | tig0022418:45599-45618 | Msa1400150:intron | 20.0% |
!! | AAATTGTGTAAAGAACAATA+TGG | + | tig0022418:45670-45689 | None:intergenic | 20.0% |
!!! | ATTTTAAGAATGTTGTTGAT+TGG | + | tig0022418:45734-45753 | None:intergenic | 20.0% |
! | TGACAGTAGACAAAAAAATT+AGG | + | tig0022418:43703-43722 | None:intergenic | 25.0% |
!!! | TTTACTGCTCTTATTTTACT+TGG | - | tig0022418:44217-44236 | Msa1400150:intron | 25.0% |
! | CATCAAAATTAGTTCAAATC+AGG | + | tig0022418:44260-44279 | None:intergenic | 25.0% |
!!! | TTGAACTAATTTTGATGTCT+TGG | - | tig0022418:44263-44282 | Msa1400150:intron | 25.0% |
! | TATGGATGGTTAATTTAACT+TGG | - | tig0022418:44482-44501 | Msa1400150:intron | 25.0% |
!!! | ATTTTTCGAAATGCAGAAAA+TGG | + | tig0022418:44958-44977 | None:intergenic | 25.0% |
!!! | TTTTTTCATCCTTCAATTGA+AGG | + | tig0022418:45409-45428 | None:intergenic | 25.0% |
!! | AAATTGTTAAAGAGCTTTGT+AGG | - | tig0022418:45552-45571 | Msa1400150:intron | 25.0% |
!! | CATAAGGTACTTTTCTAACA+TGG | + | tig0022418:44044-44063 | None:intergenic | 30.0% |
ACAATGTGTGCTTACAATAT+GGG | - | tig0022418:44154-44173 | Msa1400150:three_prime_UTR | 30.0% | |
TTCGGAGTTGAAGAAAATTA+TGG | - | tig0022418:44364-44383 | Msa1400150:CDS | 30.0% | |
GTTAGTAATGTCAATATGGA+TGG | - | tig0022418:44468-44487 | Msa1400150:intron | 30.0% | |
!! | TTTGGGTTATTTCAGGATTT+TGG | - | tig0022418:44512-44531 | Msa1400150:intron | 30.0% |
! | GCTTAAGATGCGATATATTT+TGG | - | tig0022418:44566-44585 | Msa1400150:CDS | 30.0% |
! | ATTAGCTTCTTAGTAATCAG+AGG | + | tig0022418:44770-44789 | None:intergenic | 30.0% |
TTCAAGATTACAATCCCATA+TGG | - | tig0022418:44886-44905 | Msa1400150:intron | 30.0% | |
TTGTCACTGTTGTCAAATAA+AGG | - | tig0022418:45044-45063 | Msa1400150:intron | 30.0% | |
TTGTCAAATAAAGGCTATAG+TGG | - | tig0022418:45053-45072 | Msa1400150:intron | 30.0% | |
!! | GCATGGAAATTTGTTAACTT+TGG | - | tig0022418:45275-45294 | Msa1400150:intron | 30.0% |
TTCCACATGTTATATACAGT+TGG | + | tig0022418:45451-45470 | None:intergenic | 30.0% | |
!! | TTTCCAAATACAGTTTGCTA+AGG | + | tig0022418:45579-45598 | None:intergenic | 30.0% |
! | GGAAGATGTTTATTGGTAAC+AGG | + | tig0022418:43225-43244 | None:intergenic | 35.0% |
TCGAATGGAGCTAAAATTGA+AGG | + | tig0022418:43428-43447 | None:intergenic | 35.0% | |
!!! | GGTTTTGAGAGAAAATCGAA+TGG | + | tig0022418:43443-43462 | None:intergenic | 35.0% |
AAGGTGAAAGAAAGAAAGCA+AGG | + | tig0022418:43595-43614 | None:intergenic | 35.0% | |
TTGCTTTCTTTCTTTCACCT+TGG | - | tig0022418:43594-43613 | Msa1400150:three_prime_UTR | 35.0% | |
! | GCTTTTCGTGTTGAAAAGAA+TGG | - | tig0022418:43616-43635 | Msa1400150:three_prime_UTR | 35.0% |
TGTCACAACATGTCTTTCTT+AGG | - | tig0022418:43718-43737 | Msa1400150:intron | 35.0% | |
! | AGGTACTTTTCTAACATGGT+AGG | + | tig0022418:44040-44059 | None:intergenic | 35.0% |
GACAATGTGTGCTTACAATA+TGG | - | tig0022418:44153-44172 | Msa1400150:three_prime_UTR | 35.0% | |
TTAGACTGAGAAGAATGCTT+CGG | - | tig0022418:44346-44365 | Msa1400150:CDS | 35.0% | |
GAAAGTTGCTGAGATTGTTA+TGG | - | tig0022418:44394-44413 | Msa1400150:CDS | 35.0% | |
!!! | ATTTCAGGATTTTGGCTAAC+AGG | - | tig0022418:44520-44539 | Msa1400150:intron | 35.0% |
ATATCGCATCTTAAGCTCAA+TGG | + | tig0022418:44562-44581 | None:intergenic | 35.0% | |
!!! | TATTTTGGAGCTAGAACACA+AGG | - | tig0022418:44581-44600 | Msa1400150:CDS | 35.0% |
!! | GAGGTGTCATATTCTGAAAT+TGG | + | tig0022418:44641-44660 | None:intergenic | 35.0% |
GGATTGTAATCTTGAACTTC+AGG | + | tig0022418:44882-44901 | None:intergenic | 35.0% | |
! | AAAATAATACCTGGCCTTTG+TGG | + | tig0022418:44921-44940 | None:intergenic | 35.0% |
TGCATTGCATATCTATGTGT+AGG | - | tig0022418:45231-45250 | Msa1400150:intron | 35.0% | |
TTGCATATCTATGTGTAGGA+TGG | - | tig0022418:45235-45254 | Msa1400150:intron | 35.0% | |
CTATTCAGTTCCTTTGTGAA+TGG | - | tig0022418:45358-45377 | Msa1400150:intron | 35.0% | |
!! | ATTGAAGGTCTTGTTGTGTT+TGG | + | tig0022418:45394-45413 | None:intergenic | 35.0% |
ACAACAAGACCTTCAATTGA+AGG | - | tig0022418:45397-45416 | Msa1400150:intron | 35.0% | |
TGCCAACTGTATATAACATG+TGG | - | tig0022418:45446-45465 | Msa1400150:five_prime_UTR | 35.0% | |
!! | TTTCTGAAATGCCTTCAGTT+TGG | - | tig0022418:45690-45709 | Msa1400150:five_prime_UTR | 35.0% |
GCAGTTGGGAAGATGTTTAT+TGG | + | tig0022418:43232-43251 | None:intergenic | 40.0% | |
ATCAGAGTCTCAATGCAGTT+GGG | + | tig0022418:43246-43265 | None:intergenic | 40.0% | |
AATCAGAGTCTCAATGCAGT+TGG | + | tig0022418:43247-43266 | None:intergenic | 40.0% | |
ATTACCTGTGAGGAGGAAAA+CGG | + | tig0022418:43328-43347 | None:intergenic | 40.0% | |
CTCAAAACCCTAACTCGATT+CGG | - | tig0022418:43454-43473 | Msa1400150:three_prime_UTR | 40.0% | |
TGATTCACCGAATCGAGTTA+GGG | + | tig0022418:43464-43483 | None:intergenic | 40.0% | |
! | CTTTTCAACACGAAAAGCCA+AGG | + | tig0022418:43614-43633 | None:intergenic | 40.0% |
! | ACCTTGTTATGCTTGTGTAG+GGG | + | tig0022418:43778-43797 | None:intergenic | 40.0% |
! | CACCTTGTTATGCTTGTGTA+GGG | + | tig0022418:43779-43798 | None:intergenic | 40.0% |
CTACACAAGCATAACAAGGT+GGG | - | tig0022418:43778-43797 | Msa1400150:intron | 40.0% | |
GCTTAACTAATTGTGCAGGT+TGG | + | tig0022418:44016-44035 | None:intergenic | 40.0% | |
AGGAGCTTAACTAATTGTGC+AGG | + | tig0022418:44020-44039 | None:intergenic | 40.0% | |
TAAGGCTCCATTCATTGCTA+AGG | - | tig0022418:44102-44121 | Msa1400150:three_prime_UTR | 40.0% | |
!!! | GATTTTGGCTAACAGGCAAT+CGG | - | tig0022418:44527-44546 | Msa1400150:intron | 40.0% |
! | TTCAGACTCTGAAGACTGAA+GGG | - | tig0022418:44604-44623 | Msa1400150:exon | 40.0% |
TTACAATCCCATATGGAGCT+TGG | - | tig0022418:44893-44912 | Msa1400150:intron | 40.0% | |
! | GACAAAAACCACTGCTGATT+AGG | + | tig0022418:45029-45048 | None:intergenic | 40.0% |
!! | ACCATTATTTCTGCGATTCG+TGG | - | tig0022418:45170-45189 | Msa1400150:intron | 40.0% |
ACCACGAATCGCAGAAATAA+TGG | + | tig0022418:45174-45193 | None:intergenic | 40.0% | |
CATATCTATGTGTAGGATGG+AGG | - | tig0022418:45238-45257 | Msa1400150:intron | 40.0% | |
GTTAACTTTGGCCACCTTTA+CGG | - | tig0022418:45287-45306 | Msa1400150:intron | 40.0% | |
TTAACTTTGGCCACCTTTAC+GGG | - | tig0022418:45288-45307 | Msa1400150:intron | 40.0% | |
GGACCTTAGCAAACTGTATT+TGG | - | tig0022418:45573-45592 | Msa1400150:intron | 40.0% | |
CGAAAACTGATCCAAACTGA+AGG | + | tig0022418:45704-45723 | None:intergenic | 40.0% | |
TTCCTCCTCACAGGTAATCT+CGG | - | tig0022418:43330-43349 | Msa1400150:three_prime_UTR | 45.0% | |
GAAGAAGGAGGTGATGCTAT+CGG | + | tig0022418:43368-43387 | None:intergenic | 45.0% | |
ATAGCATCACCTCCTTCTTC+CGG | - | tig0022418:43368-43387 | Msa1400150:three_prime_UTR | 45.0% | |
ATAGATGCATATGACGTCGC+CGG | + | tig0022418:43390-43409 | None:intergenic | 45.0% | |
GTGATTCACCGAATCGAGTT+AGG | + | tig0022418:43465-43484 | None:intergenic | 45.0% | |
TCAGAGCAAACCAAAGAGGT+AGG | + | tig0022418:43487-43506 | None:intergenic | 45.0% | |
TCGATCAGAGCAAACCAAAG+AGG | + | tig0022418:43491-43510 | None:intergenic | 45.0% | |
GTGAGACAAACCACGATGAA+CGG | + | tig0022418:43517-43536 | None:intergenic | 45.0% | |
! | TTCATCGTGGTTTGTCTCAC+CGG | - | tig0022418:43517-43536 | Msa1400150:three_prime_UTR | 45.0% |
GAGTTTACCTTTGACAGGGA+CGG | + | tig0022418:43560-43579 | None:intergenic | 45.0% | |
CAGCGAGTTTACCTTTGACA+GGG | + | tig0022418:43564-43583 | None:intergenic | 45.0% | |
ACAGCGAGTTTACCTTTGAC+AGG | + | tig0022418:43565-43584 | None:intergenic | 45.0% | |
TCTTAGGCTGCTGAGAATGA+TGG | - | tig0022418:43734-43753 | Msa1400150:intron | 45.0% | |
! | CCACCTTGTTATGCTTGTGT+AGG | + | tig0022418:43780-43799 | None:intergenic | 45.0% |
CCTACACAAGCATAACAAGG+TGG | - | tig0022418:43777-43796 | Msa1400150:intron | 45.0% | |
TGCTGGCAGATCGAAACTTA+TGG | - | tig0022418:43879-43898 | Msa1400150:intron | 45.0% | |
CTCCATTCATTGCTAAGGCT+GGG | - | tig0022418:44107-44126 | Msa1400150:three_prime_UTR | 45.0% | |
TTCCCAGCCTTAGCAATGAA+TGG | + | tig0022418:44112-44131 | None:intergenic | 45.0% | |
TTGGACTGAGAAGACTGCTT+CGG | - | tig0022418:44282-44301 | Msa1400150:exon | 45.0% | |
! | GTTCAGACTCTGAAGACTGA+AGG | - | tig0022418:44603-44622 | Msa1400150:exon | 45.0% |
TGAAGCAAACTCAGCAAGAG+AGG | + | tig0022418:44660-44679 | None:intergenic | 45.0% | |
AACACTGCTTTCTCGGTTCT+AGG | + | tig0022418:44703-44722 | None:intergenic | 45.0% | |
TAGAACCGAGAAAGCAGTGT+TGG | - | tig0022418:44702-44721 | Msa1400150:intron | 45.0% | |
TGCTACCAACACTGCTTTCT+CGG | + | tig0022418:44710-44729 | None:intergenic | 45.0% | |
TGTGGAACCAAGCTCCATAT+GGG | + | tig0022418:44903-44922 | None:intergenic | 45.0% | |
TTGTGGAACCAAGCTCCATA+TGG | + | tig0022418:44904-44923 | None:intergenic | 45.0% | |
TATGGAGCTTGGTTCCACAA+AGG | - | tig0022418:44904-44923 | Msa1400150:intron | 45.0% | |
! | CCACTGCTGATTAGGAAAAC+TGG | + | tig0022418:45021-45040 | None:intergenic | 45.0% |
! | CCAGTTTTCCTAATCAGCAG+TGG | - | tig0022418:45018-45037 | Msa1400150:intron | 45.0% |
CTATGTGTAGGATGGAGGTT+TGG | - | tig0022418:45243-45262 | Msa1400150:intron | 45.0% | |
AGGTTTGGCAACTTTGAGCA+TGG | - | tig0022418:45258-45277 | Msa1400150:intron | 45.0% | |
TAACTTTGGCCACCTTTACG+GGG | - | tig0022418:45289-45308 | Msa1400150:intron | 45.0% | |
TACCCTATGCACAACCTTCT+AGG | - | tig0022418:45326-45345 | Msa1400150:intron | 45.0% | |
ACCCTATGCACAACCTTCTA+GGG | - | tig0022418:45327-45346 | Msa1400150:intron | 45.0% | |
AATAGATGCAGTGCCCTAGA+AGG | + | tig0022418:45343-45362 | None:intergenic | 45.0% | |
TCAGTTCCTTTGTGAATGGC+AGG | - | tig0022418:45362-45381 | Msa1400150:intron | 45.0% | |
CAATCTCCTGCCATTCACAA+AGG | + | tig0022418:45371-45390 | None:intergenic | 45.0% | |
GTGATGCTATCGGAGGAAGA+TGG | + | tig0022418:43358-43377 | None:intergenic | 50.0% | |
CGGTGAATCACCTACCTCTT+TGG | - | tig0022418:43474-43493 | Msa1400150:three_prime_UTR | 50.0% | |
TGATCGATCACCGTTCATCG+TGG | - | tig0022418:43504-43523 | Msa1400150:three_prime_UTR | 50.0% | |
TTTACCTTTGACAGGGACGG+AGG | + | tig0022418:43557-43576 | None:intergenic | 50.0% | |
GCCCCTACACAAGCATAACA+AGG | - | tig0022418:43774-43793 | Msa1400150:intron | 50.0% | |
GCTCCATTCATTGCTAAGGC+TGG | - | tig0022418:44106-44125 | Msa1400150:three_prime_UTR | 50.0% | |
TGCTAAGGCTGGGAAGTTGA+AGG | - | tig0022418:44117-44136 | Msa1400150:three_prime_UTR | 50.0% | |
TAAGGCTGGGAAGTTGAAGG+AGG | - | tig0022418:44120-44139 | Msa1400150:three_prime_UTR | 50.0% | |
AAGACTGCTTCGGAGGAAGA+AGG | - | tig0022418:44292-44311 | Msa1400150:CDS | 50.0% | |
GCAACGGCACAACGAATTCT+TGG | + | tig0022418:44822-44841 | None:intergenic | 50.0% | |
! | GAATTCGTTGTGCCGTTGCT+AGG | - | tig0022418:44823-44842 | Msa1400150:intron | 50.0% |
AGTGCTCGAGAACCTAGCAA+CGG | + | tig0022418:44838-44857 | None:intergenic | 50.0% | |
TATAGTGGCGCTTTGCGTAG+TGG | - | tig0022418:45068-45087 | Msa1400150:intron | 50.0% | |
CGATTCGTGGTTGACATCAC+TGG | - | tig0022418:45183-45202 | Msa1400150:intron | 50.0% | |
ATATGAGCTGCTCCCCGTAA+AGG | + | tig0022418:45304-45323 | None:intergenic | 50.0% | |
TTTACGGGGAGCAGCTCATA+TGG | - | tig0022418:45303-45322 | Msa1400150:intron | 50.0% | |
GCCCTAGAAGGTTGTGCATA+GGG | + | tig0022418:45331-45350 | None:intergenic | 50.0% | |
TGCCCTAGAAGGTTGTGCAT+AGG | + | tig0022418:45332-45351 | None:intergenic | 50.0% | |
! | ACCACCGTTTTCCTCCTCAC+AGG | - | tig0022418:43321-43340 | Msa1400150:three_prime_UTR | 55.0% |
ACCTGTGAGGAGGAAAACGG+TGG | + | tig0022418:43325-43344 | None:intergenic | 55.0% | |
GAAGGAGGTGATGCTATCGG+AGG | + | tig0022418:43365-43384 | None:intergenic | 55.0% | |
CATATGACGTCGCCGGAAGA+AGG | + | tig0022418:43383-43402 | None:intergenic | 55.0% | |
GGAGGACGAAGATGCGAAAC+CGG | + | tig0022418:43539-43558 | None:intergenic | 55.0% | |
GACTGAGAAGACTGCTTCGG+AGG | - | tig0022418:44285-44304 | Msa1400150:CDS | 55.0% | |
CTGATCCGAAGCGAGCTAAG+AGG | - | tig0022418:44417-44436 | Msa1400150:CDS | 55.0% | |
CAGCACCTCTTAGCTCGCTT+CGG | + | tig0022418:44425-44444 | None:intergenic | 55.0% | |
AGCTTGGTTCCACAAAGGCC+AGG | - | tig0022418:44909-44928 | Msa1400150:intron | 55.0% | |
CGCCGAGATTACCTGTGAGG+AGG | + | tig0022418:43335-43354 | None:intergenic | 60.0% | |
! | TGGCGCCGAGATTACCTGTG+AGG | + | tig0022418:43338-43357 | None:intergenic | 60.0% |
ATGACGTCGCCGGAAGAAGG+AGG | + | tig0022418:43380-43399 | None:intergenic | 60.0% | |
TCGTCCTCCGTCCCTGTCAA+AGG | - | tig0022418:43550-43569 | Msa1400150:three_prime_UTR | 60.0% | |
TGAGCTGCTCCCCGTAAAGG+TGG | + | tig0022418:45301-45320 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0022418 | gene | 43200 | 45787 | 43200 | ID=Msa1400150;Name=Msa1400150 |
tig0022418 | mRNA | 43200 | 45787 | 43200 | ID=Msa1400150-mRNA-1;Parent=Msa1400150;Name=Msa1400150-mRNA-1;_AED=0.11;_eAED=0.11;_QI=310|0.8|0.83|1|0.4|0.33|6|668|77 |
tig0022418 | exon | 43200 | 43734 | 43200 | ID=Msa1400150-mRNA-1:exon:17595;Parent=Msa1400150-mRNA-1 |
tig0022418 | exon | 44057 | 44174 | 44057 | ID=Msa1400150-mRNA-1:exon:17594;Parent=Msa1400150-mRNA-1 |
tig0022418 | exon | 44268 | 44460 | 44268 | ID=Msa1400150-mRNA-1:exon:17593;Parent=Msa1400150-mRNA-1 |
tig0022418 | exon | 44549 | 44637 | 44549 | ID=Msa1400150-mRNA-1:exon:17592;Parent=Msa1400150-mRNA-1 |
tig0022418 | exon | 45416 | 45549 | 45416 | ID=Msa1400150-mRNA-1:exon:17591;Parent=Msa1400150-mRNA-1 |
tig0022418 | exon | 45645 | 45787 | 45645 | ID=Msa1400150-mRNA-1:exon:17590;Parent=Msa1400150-mRNA-1 |
tig0022418 | five_prime_UTR | 45645 | 45787 | 45645 | ID=Msa1400150-mRNA-1:five_prime_utr;Parent=Msa1400150-mRNA-1 |
tig0022418 | five_prime_UTR | 45416 | 45549 | 45416 | ID=Msa1400150-mRNA-1:five_prime_utr;Parent=Msa1400150-mRNA-1 |
tig0022418 | five_prime_UTR | 44605 | 44637 | 44605 | ID=Msa1400150-mRNA-1:five_prime_utr;Parent=Msa1400150-mRNA-1 |
tig0022418 | CDS | 44549 | 44604 | 44549 | ID=Msa1400150-mRNA-1:cds;Parent=Msa1400150-mRNA-1 |
tig0022418 | CDS | 44283 | 44460 | 44283 | ID=Msa1400150-mRNA-1:cds;Parent=Msa1400150-mRNA-1 |
tig0022418 | three_prime_UTR | 44268 | 44282 | 44268 | ID=Msa1400150-mRNA-1:three_prime_utr;Parent=Msa1400150-mRNA-1 |
tig0022418 | three_prime_UTR | 44057 | 44174 | 44057 | ID=Msa1400150-mRNA-1:three_prime_utr;Parent=Msa1400150-mRNA-1 |
tig0022418 | three_prime_UTR | 43200 | 43734 | 43200 | ID=Msa1400150-mRNA-1:three_prime_utr;Parent=Msa1400150-mRNA-1 |
Gene Sequence |
Protein sequence |