Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400570 | KEH17097.1 | 69.167 | 120 | 16 | 1 | 1 | 120 | 1 | 99 | 1.78e-49 | 165 |
| Msa1400570 | KEH17097.1 | 82.000 | 50 | 9 | 0 | 75 | 124 | 11 | 60 | 5.87e-20 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400570 | G7ZUP9 | 69.167 | 120 | 16 | 1 | 1 | 120 | 1 | 99 | 8.51e-50 | 165 |
| Msa1400570 | G7ZUP9 | 82.000 | 50 | 9 | 0 | 75 | 124 | 11 | 60 | 2.80e-20 | 90.1 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1400570 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | tig0022460:+90474 | Msa1400570:CDS |
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | tig0022460:+92633 | Msa1400570:CDS |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | tig0022460:-92818 | None:intergenic |
| ATATACTACAAACTGAAATA+TGG | 0.311128 | tig0022460:-90659 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | tig0022460:-90634 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | tig0022460:-92793 | None:intergenic |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | tig0022460:+90628 | Msa1400570:CDS |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | tig0022460:+92787 | Msa1400570:CDS |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | tig0022460:+90451 | Msa1400570:CDS |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | tig0022460:-90568 | None:intergenic |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | tig0022460:-92727 | None:intergenic |
| ACCCCTACTTTCGAAGGACT+TGG | 0.483526 | tig0022460:-90453 | None:intergenic |
| CAAAGCACCGCTACTTTCGA+AGG | 0.509194 | tig0022460:-92618 | None:intergenic |
| CCCCTACTTTCGAAGGACTT+GGG | 0.544991 | tig0022460:-90452 | None:intergenic |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | tig0022460:+90450 | Msa1400570:CDS |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | tig0022460:-90587 | None:intergenic |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | tig0022460:-92746 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | tig0022460:-90459 | None:intergenic |
| CCCAAGTCCTTCGAAAGTAG+CGG | 0.646080 | tig0022460:+92611 | Msa1400570:intron |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | tig0022460:+90452 | Msa1400570:CDS |
| TGGGACAATCAAAGCAAGCG+TGG | 0.684170 | tig0022460:-90433 | None:intergenic |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | tig0022460:+90512 | Msa1400570:CDS |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | tig0022460:+92671 | Msa1400570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATTTAATAA+GGG | - | tig0022460:92047-92066 | None:intergenic | 0.0% |
| !! | ATATATATATATATTTAATA+AGG | - | tig0022460:92046-92065 | None:intergenic | 0.0% |
| !! | TATATATATATATTTAATAA+GGG | - | tig0022460:92047-92066 | None:intergenic | 0.0% |
| !! | ATATATATATATATTTAATA+AGG | - | tig0022460:92046-92065 | None:intergenic | 0.0% |
| !!! | TTAATTTTAGTTAAATTTCT+TGG | + | tig0022460:90811-90830 | Msa1400570:intron | 10.0% |
| !! | ATAAAATTATAAACTCAAAA+TGG | + | tig0022460:91145-91164 | Msa1400570:intron | 10.0% |
| !!! | TTTCTATTTAGAATATTTTT+AGG | + | tig0022460:91324-91343 | Msa1400570:intron | 10.0% |
| !!! | TCTTTATTTATTTTAAATTG+AGG | + | tig0022460:91353-91372 | Msa1400570:intron | 10.0% |
| !!! | CTTTATTTATTTTAAATTGA+GGG | + | tig0022460:91354-91373 | Msa1400570:intron | 10.0% |
| !! | TTATGTATAAAAAAAAATGA+GGG | + | tig0022460:91417-91436 | Msa1400570:intron | 10.0% |
| !! | AATTCTATTAAATCATATTT+AGG | + | tig0022460:92120-92139 | Msa1400570:intron | 10.0% |
| !! | ATTCTATTAAATCATATTTA+GGG | + | tig0022460:92121-92140 | Msa1400570:intron | 10.0% |
| !!! | TTAATTTTAGTTAAATTTCT+TGG | + | tig0022460:90811-90830 | Msa1400570:intron | 10.0% |
| !! | ATAAAATTATAAACTCAAAA+TGG | + | tig0022460:91145-91164 | Msa1400570:intron | 10.0% |
| !!! | TTTCTATTTAGAATATTTTT+AGG | + | tig0022460:91324-91343 | Msa1400570:intron | 10.0% |
| !!! | TCTTTATTTATTTTAAATTG+AGG | + | tig0022460:91353-91372 | Msa1400570:intron | 10.0% |
| !!! | CTTTATTTATTTTAAATTGA+GGG | + | tig0022460:91354-91373 | Msa1400570:intron | 10.0% |
| !! | TTATGTATAAAAAAAAATGA+GGG | + | tig0022460:91417-91436 | Msa1400570:intron | 10.0% |
| !! | AATTCTATTAAATCATATTT+AGG | + | tig0022460:92120-92139 | Msa1400570:intron | 10.0% |
| !! | ATTCTATTAAATCATATTTA+GGG | + | tig0022460:92121-92140 | Msa1400570:intron | 10.0% |
| !!! | TATGAGTATTTTTTTCAAAA+GGG | - | tig0022460:91258-91277 | None:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTCAAA+AGG | - | tig0022460:91259-91278 | None:intergenic | 15.0% |
| !! | GTTATGTATAAAAAAAAATG+AGG | + | tig0022460:91416-91435 | Msa1400570:intron | 15.0% |
| !!! | TATGAGTATTTTTTTCAAAA+GGG | - | tig0022460:91258-91277 | None:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTCAAA+AGG | - | tig0022460:91259-91278 | None:intergenic | 15.0% |
| !! | GTTATGTATAAAAAAAAATG+AGG | + | tig0022460:91416-91435 | Msa1400570:intron | 15.0% |
| !! | ATATACTACAAACTGAAATA+TGG | - | tig0022460:90662-90681 | None:intergenic | 20.0% |
| !! | TATTATAATTCTTGCATGTA+TGG | + | tig0022460:90767-90786 | Msa1400570:intron | 20.0% |
| !!! | TTTTAATTATGTATGAGAGT+AGG | + | tig0022460:90853-90872 | Msa1400570:intron | 20.0% |
| !! | TGTGAATAATAAACTACAAA+AGG | - | tig0022460:90955-90974 | None:intergenic | 20.0% |
| !!! | TATATGTGATGCTAAATTTT+AGG | - | tig0022460:91977-91996 | None:intergenic | 20.0% |
| !! | ATATACTACAAACTGAAATA+TGG | - | tig0022460:90662-90681 | None:intergenic | 20.0% |
| !! | TATTATAATTCTTGCATGTA+TGG | + | tig0022460:90767-90786 | Msa1400570:intron | 20.0% |
| !!! | TTTTAATTATGTATGAGAGT+AGG | + | tig0022460:90853-90872 | Msa1400570:intron | 20.0% |
| !! | TGTGAATAATAAACTACAAA+AGG | - | tig0022460:90955-90974 | None:intergenic | 20.0% |
| !!! | TATATGTGATGCTAAATTTT+AGG | - | tig0022460:91977-91996 | None:intergenic | 20.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | - | tig0022460:90614-90633 | None:intergenic | 25.0% |
| !! | TTTGTCGACTATATATTCTT+AGG | + | tig0022460:90730-90749 | Msa1400570:intron | 25.0% |
| ! | AGGATGAAATATTCTATTAC+AGG | + | tig0022460:90873-90892 | Msa1400570:intron | 25.0% |
| ! | AACATAATTAAAAGCTTACG+AGG | + | tig0022460:91056-91075 | Msa1400570:intron | 25.0% |
| ! | GCAACAAAAACTATGAAATA+AGG | + | tig0022460:92381-92400 | Msa1400570:intron | 25.0% |
| ! | TTATTCAACAGTATATCCAT+GGG | - | tig0022460:92443-92462 | None:intergenic | 25.0% |
| ! | ATTATTCAACAGTATATCCA+TGG | - | tig0022460:92444-92463 | None:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | - | tig0022460:90614-90633 | None:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | - | tig0022460:90614-90633 | None:intergenic | 25.0% |
| !! | TTTGTCGACTATATATTCTT+AGG | + | tig0022460:90730-90749 | Msa1400570:intron | 25.0% |
| ! | AGGATGAAATATTCTATTAC+AGG | + | tig0022460:90873-90892 | Msa1400570:intron | 25.0% |
| ! | AACATAATTAAAAGCTTACG+AGG | + | tig0022460:91056-91075 | Msa1400570:intron | 25.0% |
| ! | GCAACAAAAACTATGAAATA+AGG | + | tig0022460:92381-92400 | Msa1400570:intron | 25.0% |
| ! | TTATTCAACAGTATATCCAT+GGG | - | tig0022460:92443-92462 | None:intergenic | 25.0% |
| ! | ATTATTCAACAGTATATCCA+TGG | - | tig0022460:92444-92463 | None:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | - | tig0022460:90614-90633 | None:intergenic | 25.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | - | tig0022460:90490-90509 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | + | tig0022460:90628-90647 | Msa1400570:CDS | 30.0% | |
| TAGTTTATTATTCACAGCTC+CGG | + | tig0022460:90959-90978 | Msa1400570:intron | 30.0% | |
| ATTGACAGCATATTAGAGTA+GGG | - | tig0022460:91582-91601 | None:intergenic | 30.0% | |
| AATTGACAGCATATTAGAGT+AGG | - | tig0022460:91583-91602 | None:intergenic | 30.0% | |
| AATTCCATTGTCTACTTGTA+GGG | + | tig0022460:91907-91926 | Msa1400570:intron | 30.0% | |
| !!! | AGCTAAGTTTTGGGTTTAAA+TGG | - | tig0022460:91936-91955 | None:intergenic | 30.0% |
| !! | TGTGATGCTAAATTTTAGGT+GGG | - | tig0022460:91973-91992 | None:intergenic | 30.0% |
| ! | ATGTGATGCTAAATTTTAGG+TGG | - | tig0022460:91974-91993 | None:intergenic | 30.0% |
| !! | TAAATTTTGTTGTGAACCCA+TGG | + | tig0022460:92424-92443 | Msa1400570:intron | 30.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | - | tig0022460:90490-90509 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | + | tig0022460:90628-90647 | Msa1400570:CDS | 30.0% | |
| ! | CTTCACATTCAAACCTTTTA+TGG | - | tig0022460:90490-90509 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | + | tig0022460:90628-90647 | Msa1400570:CDS | 30.0% | |
| TAGTTTATTATTCACAGCTC+CGG | + | tig0022460:90959-90978 | Msa1400570:intron | 30.0% | |
| ATTGACAGCATATTAGAGTA+GGG | - | tig0022460:91582-91601 | None:intergenic | 30.0% | |
| AATTGACAGCATATTAGAGT+AGG | - | tig0022460:91583-91602 | None:intergenic | 30.0% | |
| AATTCCATTGTCTACTTGTA+GGG | + | tig0022460:91907-91926 | Msa1400570:intron | 30.0% | |
| !!! | AGCTAAGTTTTGGGTTTAAA+TGG | - | tig0022460:91936-91955 | None:intergenic | 30.0% |
| !! | TGTGATGCTAAATTTTAGGT+GGG | - | tig0022460:91973-91992 | None:intergenic | 30.0% |
| ! | ATGTGATGCTAAATTTTAGG+TGG | - | tig0022460:91974-91993 | None:intergenic | 30.0% |
| !! | TAAATTTTGTTGTGAACCCA+TGG | + | tig0022460:92424-92443 | Msa1400570:intron | 30.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | - | tig0022460:90490-90509 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | + | tig0022460:90628-90647 | Msa1400570:CDS | 30.0% | |
| CATTGAGGATTATGTACTTG+CGG | - | tig0022460:90599-90618 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | - | tig0022460:90637-90656 | None:intergenic | 35.0% | |
| !!! | TTTGGATGTCATTTTGCTCT+TGG | - | tig0022460:91534-91553 | None:intergenic | 35.0% |
| ! | GTAGTTGGACACAATTCTTT+TGG | - | tig0022460:91552-91571 | None:intergenic | 35.0% |
| ! | AAATTAGTTGACTCTCGAAC+TGG | - | tig0022460:91878-91897 | None:intergenic | 35.0% |
| CTACAAGTAGACAATGGAAT+TGG | - | tig0022460:91908-91927 | None:intergenic | 35.0% | |
| CAATTCCATTGTCTACTTGT+AGG | + | tig0022460:91906-91925 | Msa1400570:intron | 35.0% | |
| ! | TCCATACAGAGCTAAGTTTT+GGG | - | tig0022460:91945-91964 | None:intergenic | 35.0% |
| AAATAGTGCATTAGAGTGTG+AGG | - | tig0022460:92505-92524 | None:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | - | tig0022460:90599-90618 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | - | tig0022460:90637-90656 | None:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | - | tig0022460:90599-90618 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | - | tig0022460:90637-90656 | None:intergenic | 35.0% | |
| !!! | TTTGGATGTCATTTTGCTCT+TGG | - | tig0022460:91534-91553 | None:intergenic | 35.0% |
| ! | GTAGTTGGACACAATTCTTT+TGG | - | tig0022460:91552-91571 | None:intergenic | 35.0% |
| ! | AAATTAGTTGACTCTCGAAC+TGG | - | tig0022460:91878-91897 | None:intergenic | 35.0% |
| CTACAAGTAGACAATGGAAT+TGG | - | tig0022460:91908-91927 | None:intergenic | 35.0% | |
| CAATTCCATTGTCTACTTGT+AGG | + | tig0022460:91906-91925 | Msa1400570:intron | 35.0% | |
| ! | TCCATACAGAGCTAAGTTTT+GGG | - | tig0022460:91945-91964 | None:intergenic | 35.0% |
| AAATAGTGCATTAGAGTGTG+AGG | - | tig0022460:92505-92524 | None:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | - | tig0022460:90599-90618 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | - | tig0022460:90637-90656 | None:intergenic | 35.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | + | tig0022460:90474-90493 | Msa1400570:CDS | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | + | tig0022460:90512-90531 | Msa1400570:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | - | tig0022460:90571-90590 | None:intergenic | 40.0% | |
| GAAGCATGAACGAACTTCAT+AGG | + | tig0022460:91029-91048 | Msa1400570:intron | 40.0% | |
| ACGAGGATTAAAAGCTTACG+AGG | + | tig0022460:91073-91092 | Msa1400570:intron | 40.0% | |
| GAAAACCATTGAGTCTGCTA+GGG | - | tig0022460:91116-91135 | None:intergenic | 40.0% | |
| TGAAAACCATTGAGTCTGCT+AGG | - | tig0022460:91117-91136 | None:intergenic | 40.0% | |
| AGAATTGTGTCCAACTACGT+TGG | + | tig0022460:91554-91573 | Msa1400570:intron | 40.0% | |
| GAATTGTGTCCAACTACGTT+GGG | + | tig0022460:91555-91574 | Msa1400570:intron | 40.0% | |
| !! | ACCCAAAACTTAGCTCTGTA+TGG | + | tig0022460:91941-91960 | Msa1400570:intron | 40.0% |
| ! | GTCCATACAGAGCTAAGTTT+TGG | - | tig0022460:91946-91965 | None:intergenic | 40.0% |
| GAACATCGTGGATGATTCTT+AGG | - | tig0022460:92573-92592 | None:intergenic | 40.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | + | tig0022460:90474-90493 | Msa1400570:CDS | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | + | tig0022460:90512-90531 | Msa1400570:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | - | tig0022460:90571-90590 | None:intergenic | 40.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | + | tig0022460:90474-90493 | Msa1400570:CDS | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | + | tig0022460:90512-90531 | Msa1400570:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | - | tig0022460:90571-90590 | None:intergenic | 40.0% | |
| GAAGCATGAACGAACTTCAT+AGG | + | tig0022460:91029-91048 | Msa1400570:intron | 40.0% | |
| ACGAGGATTAAAAGCTTACG+AGG | + | tig0022460:91073-91092 | Msa1400570:intron | 40.0% | |
| GAAAACCATTGAGTCTGCTA+GGG | - | tig0022460:91116-91135 | None:intergenic | 40.0% | |
| TGAAAACCATTGAGTCTGCT+AGG | - | tig0022460:91117-91136 | None:intergenic | 40.0% | |
| AGAATTGTGTCCAACTACGT+TGG | + | tig0022460:91554-91573 | Msa1400570:intron | 40.0% | |
| GAATTGTGTCCAACTACGTT+GGG | + | tig0022460:91555-91574 | Msa1400570:intron | 40.0% | |
| !! | ACCCAAAACTTAGCTCTGTA+TGG | + | tig0022460:91941-91960 | Msa1400570:intron | 40.0% |
| ! | GTCCATACAGAGCTAAGTTT+TGG | - | tig0022460:91946-91965 | None:intergenic | 40.0% |
| GAACATCGTGGATGATTCTT+AGG | - | tig0022460:92573-92592 | None:intergenic | 40.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | + | tig0022460:90474-90493 | Msa1400570:CDS | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | + | tig0022460:90512-90531 | Msa1400570:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | - | tig0022460:90571-90590 | None:intergenic | 40.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | + | tig0022460:90451-90470 | Msa1400570:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | - | tig0022460:90590-90609 | None:intergenic | 45.0% | |
| CCGAATACATCACACATGAC+CGG | - | tig0022460:90981-91000 | None:intergenic | 45.0% | |
| CCGGTCATGTGTGATGTATT+CGG | + | tig0022460:90978-90997 | Msa1400570:intron | 45.0% | |
| ACAAACCCTAGCAGACTCAA+TGG | + | tig0022460:91108-91127 | Msa1400570:intron | 45.0% | |
| GAGACCCTACAAGTAGACAA+TGG | - | tig0022460:91914-91933 | None:intergenic | 45.0% | |
| AGTGCATTAGAGTGTGAGGT+AGG | - | tig0022460:92501-92520 | None:intergenic | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | - | tig0022460:90590-90609 | None:intergenic | 45.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | + | tig0022460:90451-90470 | Msa1400570:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | - | tig0022460:90590-90609 | None:intergenic | 45.0% | |
| CCGAATACATCACACATGAC+CGG | - | tig0022460:90981-91000 | None:intergenic | 45.0% | |
| CCGGTCATGTGTGATGTATT+CGG | + | tig0022460:90978-90997 | Msa1400570:intron | 45.0% | |
| ACAAACCCTAGCAGACTCAA+TGG | + | tig0022460:91108-91127 | Msa1400570:intron | 45.0% | |
| GAGACCCTACAAGTAGACAA+TGG | - | tig0022460:91914-91933 | None:intergenic | 45.0% | |
| AGTGCATTAGAGTGTGAGGT+AGG | - | tig0022460:92501-92520 | None:intergenic | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | - | tig0022460:90590-90609 | None:intergenic | 45.0% | |
| !!! | TTATTAATTGAATATTTTAA+TGG | + | tig0022460:91177-91196 | Msa1400570:intron | 5.0% |
| !! | TCATAAATATTATTAAAAAA+AGG | + | tig0022460:91605-91624 | Msa1400570:intron | 5.0% |
| !!! | ATTTATTTATTTTTATTTGA+AGG | + | tig0022460:91696-91715 | Msa1400570:intron | 5.0% |
| !!! | TTTTTTTTAAAAAAAAAACT+TGG | + | tig0022460:91849-91868 | Msa1400570:intron | 5.0% |
| !!! | TTATTAATTGAATATTTTAA+TGG | + | tig0022460:91177-91196 | Msa1400570:intron | 5.0% |
| !! | TCATAAATATTATTAAAAAA+AGG | + | tig0022460:91605-91624 | Msa1400570:intron | 5.0% |
| !!! | ATTTATTTATTTTTATTTGA+AGG | + | tig0022460:91696-91715 | Msa1400570:intron | 5.0% |
| !!! | TTTTTTTTAAAAAAAAAACT+TGG | + | tig0022460:91849-91868 | Msa1400570:intron | 5.0% |
| TGGGACAATCAAAGCAAGCG+TGG | - | tig0022460:90436-90455 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | + | tig0022460:90450-90469 | Msa1400570:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | - | tig0022460:90455-90474 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | + | tig0022460:90452-90471 | Msa1400570:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | - | tig0022460:90456-90475 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | - | tig0022460:90462-90481 | None:intergenic | 50.0% |
| AAAGCAAGCGTGGAACATCG+TGG | - | tig0022460:92585-92604 | None:intergenic | 50.0% | |
| TGGGACAATCAAAGCAAGCG+TGG | - | tig0022460:90436-90455 | None:intergenic | 50.0% | |
| ! | CCGCTACTTTCGAAGGACTT+GGG | - | tig0022460:92614-92633 | None:intergenic | 50.0% |
| CCCAAGTCCTTCGAAAGTAG+CGG | + | tig0022460:90452-90471 | Msa1400570:CDS | 50.0% | |
| ! | ACCGCTACTTTCGAAGGACT+TGG | - | tig0022460:92615-92634 | None:intergenic | 50.0% |
| !! | CAAAGCACCGCTACTTTCGA+AGG | - | tig0022460:92621-92640 | None:intergenic | 50.0% |
| TGGGACAATCAAAGCAAGCG+TGG | - | tig0022460:90436-90455 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | + | tig0022460:90450-90469 | Msa1400570:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | - | tig0022460:90455-90474 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | + | tig0022460:90452-90471 | Msa1400570:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | - | tig0022460:90456-90475 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | - | tig0022460:90462-90481 | None:intergenic | 50.0% |
| AAAGCAAGCGTGGAACATCG+TGG | - | tig0022460:92585-92604 | None:intergenic | 50.0% | |
| TGGGACAATCAAAGCAAGCG+TGG | - | tig0022460:90436-90455 | None:intergenic | 50.0% | |
| ! | CCGCTACTTTCGAAGGACTT+GGG | - | tig0022460:92614-92633 | None:intergenic | 50.0% |
| CCCAAGTCCTTCGAAAGTAG+CGG | + | tig0022460:90452-90471 | Msa1400570:CDS | 50.0% | |
| ! | ACCGCTACTTTCGAAGGACT+TGG | - | tig0022460:92615-92634 | None:intergenic | 50.0% |
| !! | CAAAGCACCGCTACTTTCGA+AGG | - | tig0022460:92621-92640 | None:intergenic | 50.0% |
| GAGTAGGGTCCCAACGTAGT+TGG | - | tig0022460:91567-91586 | None:intergenic | 55.0% | |
| GAGTAGGGTCCCAACGTAGT+TGG | - | tig0022460:91567-91586 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022460 | gene | 90428 | 92834 | 90428 | ID=Msa1400570;Name=Msa1400570 |
| tig0022460 | mRNA | 90428 | 92834 | 90428 | ID=Msa1400570-mRNA-1;Parent=Msa1400570;Name=Msa1400570-mRNA-1;_AED=0.40;_eAED=0.54;_QI=0|0|0|1|0|0|4|0|138 |
| tig0022460 | exon | 90428 | 90601 | 90428 | ID=Msa1400570-mRNA-1:exon:17748;Parent=Msa1400570-mRNA-1 |
| tig0022460 | exon | 90628 | 90675 | 90628 | ID=Msa1400570-mRNA-1:exon:17749;Parent=Msa1400570-mRNA-1 |
| tig0022460 | exon | 92617 | 92760 | 92617 | ID=Msa1400570-mRNA-1:exon:17750;Parent=Msa1400570-mRNA-1 |
| tig0022460 | exon | 92787 | 92834 | 92787 | ID=Msa1400570-mRNA-1:exon:17751;Parent=Msa1400570-mRNA-1 |
| tig0022460 | CDS | 90428 | 90601 | 90428 | ID=Msa1400570-mRNA-1:cds;Parent=Msa1400570-mRNA-1 |
| tig0022460 | CDS | 90628 | 90675 | 90628 | ID=Msa1400570-mRNA-1:cds;Parent=Msa1400570-mRNA-1 |
| tig0022460 | CDS | 92617 | 92760 | 92617 | ID=Msa1400570-mRNA-1:cds;Parent=Msa1400570-mRNA-1 |
| tig0022460 | CDS | 92787 | 92834 | 92787 | ID=Msa1400570-mRNA-1:cds;Parent=Msa1400570-mRNA-1 |
| Gene Sequence |
| Protein sequence |