Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1400570 | KEH17097.1 | 69.167 | 120 | 16 | 1 | 1 | 120 | 1 | 99 | 1.78e-49 | 165 |
Msa1400570 | KEH17097.1 | 82.000 | 50 | 9 | 0 | 75 | 124 | 11 | 60 | 5.87e-20 | 90.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1400570 | G7ZUP9 | 69.167 | 120 | 16 | 1 | 1 | 120 | 1 | 99 | 8.51e-50 | 165 |
Msa1400570 | G7ZUP9 | 82.000 | 50 | 9 | 0 | 75 | 124 | 11 | 60 | 2.80e-20 | 90.1 |
Gene ID | Type | Classification |
---|---|---|
Msa1400570 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 23 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | tig0022460:+90474 | Msa1400570:CDS |
GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | tig0022460:+92633 | Msa1400570:CDS |
ATATACTATAAACTGAAATA+TGG | 0.301575 | tig0022460:-92818 | None:intergenic |
ATATACTACAAACTGAAATA+TGG | 0.311128 | tig0022460:-90659 | None:intergenic |
TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | tig0022460:-90634 | None:intergenic |
TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | tig0022460:-92793 | None:intergenic |
AATTCTCCAAGAAGATATAC+TGG | 0.369151 | tig0022460:+90628 | Msa1400570:CDS |
AATTCTCCAAGAAGATATAC+TGG | 0.369151 | tig0022460:+92787 | Msa1400570:CDS |
TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | tig0022460:+90451 | Msa1400570:CDS |
GTGGTTGACATGTCTTCATA+TGG | 0.455172 | tig0022460:-90568 | None:intergenic |
GTGGTTGACATGTCTTCATA+TGG | 0.455172 | tig0022460:-92727 | None:intergenic |
ACCCCTACTTTCGAAGGACT+TGG | 0.483526 | tig0022460:-90453 | None:intergenic |
CAAAGCACCGCTACTTTCGA+AGG | 0.509194 | tig0022460:-92618 | None:intergenic |
CCCCTACTTTCGAAGGACTT+GGG | 0.544991 | tig0022460:-90452 | None:intergenic |
GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | tig0022460:+90450 | Msa1400570:CDS |
TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | tig0022460:-90587 | None:intergenic |
TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | tig0022460:-92746 | None:intergenic |
CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | tig0022460:-90459 | None:intergenic |
CCCAAGTCCTTCGAAAGTAG+CGG | 0.646080 | tig0022460:+92611 | Msa1400570:intron |
CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | tig0022460:+90452 | Msa1400570:CDS |
TGGGACAATCAAAGCAAGCG+TGG | 0.684170 | tig0022460:-90433 | None:intergenic |
AAAACACGTTGCGATAGATG+TGG | 0.685090 | tig0022460:+90512 | Msa1400570:CDS |
AAAACACGTTGCGATAGATG+TGG | 0.685090 | tig0022460:+92671 | Msa1400570:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATATATTTAATAA+GGG | - | tig0022460:92047-92066 | None:intergenic | 0.0% |
!! | ATATATATATATATTTAATA+AGG | - | tig0022460:92046-92065 | None:intergenic | 0.0% |
!! | TATATATATATATTTAATAA+GGG | - | tig0022460:92047-92066 | None:intergenic | 0.0% |
!! | ATATATATATATATTTAATA+AGG | - | tig0022460:92046-92065 | None:intergenic | 0.0% |
!!! | TTAATTTTAGTTAAATTTCT+TGG | + | tig0022460:90811-90830 | Msa1400570:intron | 10.0% |
!! | ATAAAATTATAAACTCAAAA+TGG | + | tig0022460:91145-91164 | Msa1400570:intron | 10.0% |
!!! | TTTCTATTTAGAATATTTTT+AGG | + | tig0022460:91324-91343 | Msa1400570:intron | 10.0% |
!!! | TCTTTATTTATTTTAAATTG+AGG | + | tig0022460:91353-91372 | Msa1400570:intron | 10.0% |
!!! | CTTTATTTATTTTAAATTGA+GGG | + | tig0022460:91354-91373 | Msa1400570:intron | 10.0% |
!! | TTATGTATAAAAAAAAATGA+GGG | + | tig0022460:91417-91436 | Msa1400570:intron | 10.0% |
!! | AATTCTATTAAATCATATTT+AGG | + | tig0022460:92120-92139 | Msa1400570:intron | 10.0% |
!! | ATTCTATTAAATCATATTTA+GGG | + | tig0022460:92121-92140 | Msa1400570:intron | 10.0% |
!!! | TTAATTTTAGTTAAATTTCT+TGG | + | tig0022460:90811-90830 | Msa1400570:intron | 10.0% |
!! | ATAAAATTATAAACTCAAAA+TGG | + | tig0022460:91145-91164 | Msa1400570:intron | 10.0% |
!!! | TTTCTATTTAGAATATTTTT+AGG | + | tig0022460:91324-91343 | Msa1400570:intron | 10.0% |
!!! | TCTTTATTTATTTTAAATTG+AGG | + | tig0022460:91353-91372 | Msa1400570:intron | 10.0% |
!!! | CTTTATTTATTTTAAATTGA+GGG | + | tig0022460:91354-91373 | Msa1400570:intron | 10.0% |
!! | TTATGTATAAAAAAAAATGA+GGG | + | tig0022460:91417-91436 | Msa1400570:intron | 10.0% |
!! | AATTCTATTAAATCATATTT+AGG | + | tig0022460:92120-92139 | Msa1400570:intron | 10.0% |
!! | ATTCTATTAAATCATATTTA+GGG | + | tig0022460:92121-92140 | Msa1400570:intron | 10.0% |
!!! | TATGAGTATTTTTTTCAAAA+GGG | - | tig0022460:91258-91277 | None:intergenic | 15.0% |
!!! | TTATGAGTATTTTTTTCAAA+AGG | - | tig0022460:91259-91278 | None:intergenic | 15.0% |
!! | GTTATGTATAAAAAAAAATG+AGG | + | tig0022460:91416-91435 | Msa1400570:intron | 15.0% |
!!! | TATGAGTATTTTTTTCAAAA+GGG | - | tig0022460:91258-91277 | None:intergenic | 15.0% |
!!! | TTATGAGTATTTTTTTCAAA+AGG | - | tig0022460:91259-91278 | None:intergenic | 15.0% |
!! | GTTATGTATAAAAAAAAATG+AGG | + | tig0022460:91416-91435 | Msa1400570:intron | 15.0% |
!! | ATATACTACAAACTGAAATA+TGG | - | tig0022460:90662-90681 | None:intergenic | 20.0% |
!! | TATTATAATTCTTGCATGTA+TGG | + | tig0022460:90767-90786 | Msa1400570:intron | 20.0% |
!!! | TTTTAATTATGTATGAGAGT+AGG | + | tig0022460:90853-90872 | Msa1400570:intron | 20.0% |
!! | TGTGAATAATAAACTACAAA+AGG | - | tig0022460:90955-90974 | None:intergenic | 20.0% |
!!! | TATATGTGATGCTAAATTTT+AGG | - | tig0022460:91977-91996 | None:intergenic | 20.0% |
!! | ATATACTACAAACTGAAATA+TGG | - | tig0022460:90662-90681 | None:intergenic | 20.0% |
!! | TATTATAATTCTTGCATGTA+TGG | + | tig0022460:90767-90786 | Msa1400570:intron | 20.0% |
!!! | TTTTAATTATGTATGAGAGT+AGG | + | tig0022460:90853-90872 | Msa1400570:intron | 20.0% |
!! | TGTGAATAATAAACTACAAA+AGG | - | tig0022460:90955-90974 | None:intergenic | 20.0% |
!!! | TATATGTGATGCTAAATTTT+AGG | - | tig0022460:91977-91996 | None:intergenic | 20.0% |
! | AGAATTCTTCAAATTCATTG+AGG | - | tig0022460:90614-90633 | None:intergenic | 25.0% |
!! | TTTGTCGACTATATATTCTT+AGG | + | tig0022460:90730-90749 | Msa1400570:intron | 25.0% |
! | AGGATGAAATATTCTATTAC+AGG | + | tig0022460:90873-90892 | Msa1400570:intron | 25.0% |
! | AACATAATTAAAAGCTTACG+AGG | + | tig0022460:91056-91075 | Msa1400570:intron | 25.0% |
! | GCAACAAAAACTATGAAATA+AGG | + | tig0022460:92381-92400 | Msa1400570:intron | 25.0% |
! | TTATTCAACAGTATATCCAT+GGG | - | tig0022460:92443-92462 | None:intergenic | 25.0% |
! | ATTATTCAACAGTATATCCA+TGG | - | tig0022460:92444-92463 | None:intergenic | 25.0% |
! | AGAATTCTTCAAATTCATTG+AGG | - | tig0022460:90614-90633 | None:intergenic | 25.0% |
! | AGAATTCTTCAAATTCATTG+AGG | - | tig0022460:90614-90633 | None:intergenic | 25.0% |
!! | TTTGTCGACTATATATTCTT+AGG | + | tig0022460:90730-90749 | Msa1400570:intron | 25.0% |
! | AGGATGAAATATTCTATTAC+AGG | + | tig0022460:90873-90892 | Msa1400570:intron | 25.0% |
! | AACATAATTAAAAGCTTACG+AGG | + | tig0022460:91056-91075 | Msa1400570:intron | 25.0% |
! | GCAACAAAAACTATGAAATA+AGG | + | tig0022460:92381-92400 | Msa1400570:intron | 25.0% |
! | TTATTCAACAGTATATCCAT+GGG | - | tig0022460:92443-92462 | None:intergenic | 25.0% |
! | ATTATTCAACAGTATATCCA+TGG | - | tig0022460:92444-92463 | None:intergenic | 25.0% |
! | AGAATTCTTCAAATTCATTG+AGG | - | tig0022460:90614-90633 | None:intergenic | 25.0% |
! | CTTCACATTCAAACCTTTTA+TGG | - | tig0022460:90490-90509 | None:intergenic | 30.0% |
AATTCTCCAAGAAGATATAC+TGG | + | tig0022460:90628-90647 | Msa1400570:CDS | 30.0% | |
TAGTTTATTATTCACAGCTC+CGG | + | tig0022460:90959-90978 | Msa1400570:intron | 30.0% | |
ATTGACAGCATATTAGAGTA+GGG | - | tig0022460:91582-91601 | None:intergenic | 30.0% | |
AATTGACAGCATATTAGAGT+AGG | - | tig0022460:91583-91602 | None:intergenic | 30.0% | |
AATTCCATTGTCTACTTGTA+GGG | + | tig0022460:91907-91926 | Msa1400570:intron | 30.0% | |
!!! | AGCTAAGTTTTGGGTTTAAA+TGG | - | tig0022460:91936-91955 | None:intergenic | 30.0% |
!! | TGTGATGCTAAATTTTAGGT+GGG | - | tig0022460:91973-91992 | None:intergenic | 30.0% |
! | ATGTGATGCTAAATTTTAGG+TGG | - | tig0022460:91974-91993 | None:intergenic | 30.0% |
!! | TAAATTTTGTTGTGAACCCA+TGG | + | tig0022460:92424-92443 | Msa1400570:intron | 30.0% |
! | CTTCACATTCAAACCTTTTA+TGG | - | tig0022460:90490-90509 | None:intergenic | 30.0% |
AATTCTCCAAGAAGATATAC+TGG | + | tig0022460:90628-90647 | Msa1400570:CDS | 30.0% | |
! | CTTCACATTCAAACCTTTTA+TGG | - | tig0022460:90490-90509 | None:intergenic | 30.0% |
AATTCTCCAAGAAGATATAC+TGG | + | tig0022460:90628-90647 | Msa1400570:CDS | 30.0% | |
TAGTTTATTATTCACAGCTC+CGG | + | tig0022460:90959-90978 | Msa1400570:intron | 30.0% | |
ATTGACAGCATATTAGAGTA+GGG | - | tig0022460:91582-91601 | None:intergenic | 30.0% | |
AATTGACAGCATATTAGAGT+AGG | - | tig0022460:91583-91602 | None:intergenic | 30.0% | |
AATTCCATTGTCTACTTGTA+GGG | + | tig0022460:91907-91926 | Msa1400570:intron | 30.0% | |
!!! | AGCTAAGTTTTGGGTTTAAA+TGG | - | tig0022460:91936-91955 | None:intergenic | 30.0% |
!! | TGTGATGCTAAATTTTAGGT+GGG | - | tig0022460:91973-91992 | None:intergenic | 30.0% |
! | ATGTGATGCTAAATTTTAGG+TGG | - | tig0022460:91974-91993 | None:intergenic | 30.0% |
!! | TAAATTTTGTTGTGAACCCA+TGG | + | tig0022460:92424-92443 | Msa1400570:intron | 30.0% |
! | CTTCACATTCAAACCTTTTA+TGG | - | tig0022460:90490-90509 | None:intergenic | 30.0% |
AATTCTCCAAGAAGATATAC+TGG | + | tig0022460:90628-90647 | Msa1400570:CDS | 30.0% | |
CATTGAGGATTATGTACTTG+CGG | - | tig0022460:90599-90618 | None:intergenic | 35.0% | |
TGTTCTCCAGTATATCTTCT+TGG | - | tig0022460:90637-90656 | None:intergenic | 35.0% | |
!!! | TTTGGATGTCATTTTGCTCT+TGG | - | tig0022460:91534-91553 | None:intergenic | 35.0% |
! | GTAGTTGGACACAATTCTTT+TGG | - | tig0022460:91552-91571 | None:intergenic | 35.0% |
! | AAATTAGTTGACTCTCGAAC+TGG | - | tig0022460:91878-91897 | None:intergenic | 35.0% |
CTACAAGTAGACAATGGAAT+TGG | - | tig0022460:91908-91927 | None:intergenic | 35.0% | |
CAATTCCATTGTCTACTTGT+AGG | + | tig0022460:91906-91925 | Msa1400570:intron | 35.0% | |
! | TCCATACAGAGCTAAGTTTT+GGG | - | tig0022460:91945-91964 | None:intergenic | 35.0% |
AAATAGTGCATTAGAGTGTG+AGG | - | tig0022460:92505-92524 | None:intergenic | 35.0% | |
CATTGAGGATTATGTACTTG+CGG | - | tig0022460:90599-90618 | None:intergenic | 35.0% | |
TGTTCTCCAGTATATCTTCT+TGG | - | tig0022460:90637-90656 | None:intergenic | 35.0% | |
CATTGAGGATTATGTACTTG+CGG | - | tig0022460:90599-90618 | None:intergenic | 35.0% | |
TGTTCTCCAGTATATCTTCT+TGG | - | tig0022460:90637-90656 | None:intergenic | 35.0% | |
!!! | TTTGGATGTCATTTTGCTCT+TGG | - | tig0022460:91534-91553 | None:intergenic | 35.0% |
! | GTAGTTGGACACAATTCTTT+TGG | - | tig0022460:91552-91571 | None:intergenic | 35.0% |
! | AAATTAGTTGACTCTCGAAC+TGG | - | tig0022460:91878-91897 | None:intergenic | 35.0% |
CTACAAGTAGACAATGGAAT+TGG | - | tig0022460:91908-91927 | None:intergenic | 35.0% | |
CAATTCCATTGTCTACTTGT+AGG | + | tig0022460:91906-91925 | Msa1400570:intron | 35.0% | |
! | TCCATACAGAGCTAAGTTTT+GGG | - | tig0022460:91945-91964 | None:intergenic | 35.0% |
AAATAGTGCATTAGAGTGTG+AGG | - | tig0022460:92505-92524 | None:intergenic | 35.0% | |
CATTGAGGATTATGTACTTG+CGG | - | tig0022460:90599-90618 | None:intergenic | 35.0% | |
TGTTCTCCAGTATATCTTCT+TGG | - | tig0022460:90637-90656 | None:intergenic | 35.0% | |
! | GTGCTTTGAACGTCCATAAA+AGG | + | tig0022460:90474-90493 | Msa1400570:CDS | 40.0% |
AAAACACGTTGCGATAGATG+TGG | + | tig0022460:90512-90531 | Msa1400570:CDS | 40.0% | |
GTGGTTGACATGTCTTCATA+TGG | - | tig0022460:90571-90590 | None:intergenic | 40.0% | |
GAAGCATGAACGAACTTCAT+AGG | + | tig0022460:91029-91048 | Msa1400570:intron | 40.0% | |
ACGAGGATTAAAAGCTTACG+AGG | + | tig0022460:91073-91092 | Msa1400570:intron | 40.0% | |
GAAAACCATTGAGTCTGCTA+GGG | - | tig0022460:91116-91135 | None:intergenic | 40.0% | |
TGAAAACCATTGAGTCTGCT+AGG | - | tig0022460:91117-91136 | None:intergenic | 40.0% | |
AGAATTGTGTCCAACTACGT+TGG | + | tig0022460:91554-91573 | Msa1400570:intron | 40.0% | |
GAATTGTGTCCAACTACGTT+GGG | + | tig0022460:91555-91574 | Msa1400570:intron | 40.0% | |
!! | ACCCAAAACTTAGCTCTGTA+TGG | + | tig0022460:91941-91960 | Msa1400570:intron | 40.0% |
! | GTCCATACAGAGCTAAGTTT+TGG | - | tig0022460:91946-91965 | None:intergenic | 40.0% |
GAACATCGTGGATGATTCTT+AGG | - | tig0022460:92573-92592 | None:intergenic | 40.0% | |
! | GTGCTTTGAACGTCCATAAA+AGG | + | tig0022460:90474-90493 | Msa1400570:CDS | 40.0% |
AAAACACGTTGCGATAGATG+TGG | + | tig0022460:90512-90531 | Msa1400570:CDS | 40.0% | |
GTGGTTGACATGTCTTCATA+TGG | - | tig0022460:90571-90590 | None:intergenic | 40.0% | |
! | GTGCTTTGAACGTCCATAAA+AGG | + | tig0022460:90474-90493 | Msa1400570:CDS | 40.0% |
AAAACACGTTGCGATAGATG+TGG | + | tig0022460:90512-90531 | Msa1400570:CDS | 40.0% | |
GTGGTTGACATGTCTTCATA+TGG | - | tig0022460:90571-90590 | None:intergenic | 40.0% | |
GAAGCATGAACGAACTTCAT+AGG | + | tig0022460:91029-91048 | Msa1400570:intron | 40.0% | |
ACGAGGATTAAAAGCTTACG+AGG | + | tig0022460:91073-91092 | Msa1400570:intron | 40.0% | |
GAAAACCATTGAGTCTGCTA+GGG | - | tig0022460:91116-91135 | None:intergenic | 40.0% | |
TGAAAACCATTGAGTCTGCT+AGG | - | tig0022460:91117-91136 | None:intergenic | 40.0% | |
AGAATTGTGTCCAACTACGT+TGG | + | tig0022460:91554-91573 | Msa1400570:intron | 40.0% | |
GAATTGTGTCCAACTACGTT+GGG | + | tig0022460:91555-91574 | Msa1400570:intron | 40.0% | |
!! | ACCCAAAACTTAGCTCTGTA+TGG | + | tig0022460:91941-91960 | Msa1400570:intron | 40.0% |
! | GTCCATACAGAGCTAAGTTT+TGG | - | tig0022460:91946-91965 | None:intergenic | 40.0% |
GAACATCGTGGATGATTCTT+AGG | - | tig0022460:92573-92592 | None:intergenic | 40.0% | |
! | GTGCTTTGAACGTCCATAAA+AGG | + | tig0022460:90474-90493 | Msa1400570:CDS | 40.0% |
AAAACACGTTGCGATAGATG+TGG | + | tig0022460:90512-90531 | Msa1400570:CDS | 40.0% | |
GTGGTTGACATGTCTTCATA+TGG | - | tig0022460:90571-90590 | None:intergenic | 40.0% | |
TCCCAAGTCCTTCGAAAGTA+GGG | + | tig0022460:90451-90470 | Msa1400570:CDS | 45.0% | |
TTATGTACTTGCGGCTTCTG+TGG | - | tig0022460:90590-90609 | None:intergenic | 45.0% | |
CCGAATACATCACACATGAC+CGG | - | tig0022460:90981-91000 | None:intergenic | 45.0% | |
CCGGTCATGTGTGATGTATT+CGG | + | tig0022460:90978-90997 | Msa1400570:intron | 45.0% | |
ACAAACCCTAGCAGACTCAA+TGG | + | tig0022460:91108-91127 | Msa1400570:intron | 45.0% | |
GAGACCCTACAAGTAGACAA+TGG | - | tig0022460:91914-91933 | None:intergenic | 45.0% | |
AGTGCATTAGAGTGTGAGGT+AGG | - | tig0022460:92501-92520 | None:intergenic | 45.0% | |
TTATGTACTTGCGGCTTCTG+TGG | - | tig0022460:90590-90609 | None:intergenic | 45.0% | |
TCCCAAGTCCTTCGAAAGTA+GGG | + | tig0022460:90451-90470 | Msa1400570:CDS | 45.0% | |
TTATGTACTTGCGGCTTCTG+TGG | - | tig0022460:90590-90609 | None:intergenic | 45.0% | |
CCGAATACATCACACATGAC+CGG | - | tig0022460:90981-91000 | None:intergenic | 45.0% | |
CCGGTCATGTGTGATGTATT+CGG | + | tig0022460:90978-90997 | Msa1400570:intron | 45.0% | |
ACAAACCCTAGCAGACTCAA+TGG | + | tig0022460:91108-91127 | Msa1400570:intron | 45.0% | |
GAGACCCTACAAGTAGACAA+TGG | - | tig0022460:91914-91933 | None:intergenic | 45.0% | |
AGTGCATTAGAGTGTGAGGT+AGG | - | tig0022460:92501-92520 | None:intergenic | 45.0% | |
TTATGTACTTGCGGCTTCTG+TGG | - | tig0022460:90590-90609 | None:intergenic | 45.0% | |
!!! | TTATTAATTGAATATTTTAA+TGG | + | tig0022460:91177-91196 | Msa1400570:intron | 5.0% |
!! | TCATAAATATTATTAAAAAA+AGG | + | tig0022460:91605-91624 | Msa1400570:intron | 5.0% |
!!! | ATTTATTTATTTTTATTTGA+AGG | + | tig0022460:91696-91715 | Msa1400570:intron | 5.0% |
!!! | TTTTTTTTAAAAAAAAAACT+TGG | + | tig0022460:91849-91868 | Msa1400570:intron | 5.0% |
!!! | TTATTAATTGAATATTTTAA+TGG | + | tig0022460:91177-91196 | Msa1400570:intron | 5.0% |
!! | TCATAAATATTATTAAAAAA+AGG | + | tig0022460:91605-91624 | Msa1400570:intron | 5.0% |
!!! | ATTTATTTATTTTTATTTGA+AGG | + | tig0022460:91696-91715 | Msa1400570:intron | 5.0% |
!!! | TTTTTTTTAAAAAAAAAACT+TGG | + | tig0022460:91849-91868 | Msa1400570:intron | 5.0% |
TGGGACAATCAAAGCAAGCG+TGG | - | tig0022460:90436-90455 | None:intergenic | 50.0% | |
GTCCCAAGTCCTTCGAAAGT+AGG | + | tig0022460:90450-90469 | Msa1400570:CDS | 50.0% | |
CCCCTACTTTCGAAGGACTT+GGG | - | tig0022460:90455-90474 | None:intergenic | 50.0% | |
CCCAAGTCCTTCGAAAGTAG+GGG | + | tig0022460:90452-90471 | Msa1400570:CDS | 50.0% | |
ACCCCTACTTTCGAAGGACT+TGG | - | tig0022460:90456-90475 | None:intergenic | 50.0% | |
! | CAAAGCACCCCTACTTTCGA+AGG | - | tig0022460:90462-90481 | None:intergenic | 50.0% |
AAAGCAAGCGTGGAACATCG+TGG | - | tig0022460:92585-92604 | None:intergenic | 50.0% | |
TGGGACAATCAAAGCAAGCG+TGG | - | tig0022460:90436-90455 | None:intergenic | 50.0% | |
! | CCGCTACTTTCGAAGGACTT+GGG | - | tig0022460:92614-92633 | None:intergenic | 50.0% |
CCCAAGTCCTTCGAAAGTAG+CGG | + | tig0022460:90452-90471 | Msa1400570:CDS | 50.0% | |
! | ACCGCTACTTTCGAAGGACT+TGG | - | tig0022460:92615-92634 | None:intergenic | 50.0% |
!! | CAAAGCACCGCTACTTTCGA+AGG | - | tig0022460:92621-92640 | None:intergenic | 50.0% |
TGGGACAATCAAAGCAAGCG+TGG | - | tig0022460:90436-90455 | None:intergenic | 50.0% | |
GTCCCAAGTCCTTCGAAAGT+AGG | + | tig0022460:90450-90469 | Msa1400570:CDS | 50.0% | |
CCCCTACTTTCGAAGGACTT+GGG | - | tig0022460:90455-90474 | None:intergenic | 50.0% | |
CCCAAGTCCTTCGAAAGTAG+GGG | + | tig0022460:90452-90471 | Msa1400570:CDS | 50.0% | |
ACCCCTACTTTCGAAGGACT+TGG | - | tig0022460:90456-90475 | None:intergenic | 50.0% | |
! | CAAAGCACCCCTACTTTCGA+AGG | - | tig0022460:90462-90481 | None:intergenic | 50.0% |
AAAGCAAGCGTGGAACATCG+TGG | - | tig0022460:92585-92604 | None:intergenic | 50.0% | |
TGGGACAATCAAAGCAAGCG+TGG | - | tig0022460:90436-90455 | None:intergenic | 50.0% | |
! | CCGCTACTTTCGAAGGACTT+GGG | - | tig0022460:92614-92633 | None:intergenic | 50.0% |
CCCAAGTCCTTCGAAAGTAG+CGG | + | tig0022460:90452-90471 | Msa1400570:CDS | 50.0% | |
! | ACCGCTACTTTCGAAGGACT+TGG | - | tig0022460:92615-92634 | None:intergenic | 50.0% |
!! | CAAAGCACCGCTACTTTCGA+AGG | - | tig0022460:92621-92640 | None:intergenic | 50.0% |
GAGTAGGGTCCCAACGTAGT+TGG | - | tig0022460:91567-91586 | None:intergenic | 55.0% | |
GAGTAGGGTCCCAACGTAGT+TGG | - | tig0022460:91567-91586 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0022460 | gene | 90428 | 92834 | 90428 | ID=Msa1400570;Name=Msa1400570 |
tig0022460 | mRNA | 90428 | 92834 | 90428 | ID=Msa1400570-mRNA-1;Parent=Msa1400570;Name=Msa1400570-mRNA-1;_AED=0.40;_eAED=0.54;_QI=0|0|0|1|0|0|4|0|138 |
tig0022460 | exon | 90428 | 90601 | 90428 | ID=Msa1400570-mRNA-1:exon:17748;Parent=Msa1400570-mRNA-1 |
tig0022460 | exon | 90628 | 90675 | 90628 | ID=Msa1400570-mRNA-1:exon:17749;Parent=Msa1400570-mRNA-1 |
tig0022460 | exon | 92617 | 92760 | 92617 | ID=Msa1400570-mRNA-1:exon:17750;Parent=Msa1400570-mRNA-1 |
tig0022460 | exon | 92787 | 92834 | 92787 | ID=Msa1400570-mRNA-1:exon:17751;Parent=Msa1400570-mRNA-1 |
tig0022460 | CDS | 90428 | 90601 | 90428 | ID=Msa1400570-mRNA-1:cds;Parent=Msa1400570-mRNA-1 |
tig0022460 | CDS | 90628 | 90675 | 90628 | ID=Msa1400570-mRNA-1:cds;Parent=Msa1400570-mRNA-1 |
tig0022460 | CDS | 92617 | 92760 | 92617 | ID=Msa1400570-mRNA-1:cds;Parent=Msa1400570-mRNA-1 |
tig0022460 | CDS | 92787 | 92834 | 92787 | ID=Msa1400570-mRNA-1:cds;Parent=Msa1400570-mRNA-1 |
Gene Sequence |
Protein sequence |