AlfalfaGEDB | Msa1401410

M. sativa cultivar zhongmu-4 / Msa1401410

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401410	XP_039687084.1	85.246	122	18	0	1	122	1	122	4.37e-71	218

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401410	G7INX6	85.246	122	18	0	1	122	1	122	2.09e-71	218

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TFs/TRs:

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Gene ID	Type	Classification
Msa1401410	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401410	MtrunA17_Chr2g0281511	85.246	122	18	0	1	122	1	122	4.02e-75	218
Msa1401410	MtrunA17_Chr2g0309121	81.967	122	21	1	1	122	1	121	7.39e-70	205
Msa1401410	MtrunA17_Chr3g0081891	84.810	79	12	0	1	79	1	79	7.79e-45	140
Msa1401410	MtrunA17_Chr7g0276661	35.115	131	65	4	7	119	38	166	3.86e-21	83.2
Msa1401410	MtrunA17_Chr0c01g0489371	41.758	91	51	1	22	110	224	314	2.78e-17	75.9
Msa1401410	MtrunA17_Chr8g0356961	40.449	89	51	1	24	110	77	165	1.10e-16	71.6
Msa1401410	MtrunA17_Chr8g0372431	29.897	97	68	0	24	120	6	102	1.25e-16	69.7
Msa1401410	MtrunA17_Chr6g0485871	33.721	86	56	1	24	108	214	299	8.65e-13	63.2
Msa1401410	MtrunA17_Chr8g0356951	37.363	91	53	2	24	110	217	307	1.21e-12	62.8
Msa1401410	MtrunA17_Chr5g0434641	34.066	91	58	1	22	110	208	298	1.61e-12	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 23 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCCGATGTTCATTAT+TGG	0.199581	tig0022515:-36579	Msa1401410:CDS
AAGTCAATGGTGCTGAATTA+GGG	0.416476	tig0022515:-36609	Msa1401410:CDS
ACGGTAGCATACATCCTATT+AGG	0.440754	tig0022515:+36203	None:intergenic
AGAAATACATAGGGAGAGGA+TGG	0.573439	tig0022515:-36292	Msa1401410:CDS
AGCATGGATCAGAAATACAT+AGG	0.564126	tig0022515:-36302	Msa1401410:CDS
ATACTTCCAATAATGAACAT+CGG	0.646998	tig0022515:+36573	None:intergenic
ATTGGTATACAAACCATTCT+CGG	0.470714	tig0022515:+36397	None:intergenic
CCATTCTCGGCAACACGTCG+AGG	0.599354	tig0022515:+36410	None:intergenic
CCTCGACGTGTTGCCGAGAA+TGG	0.307864	tig0022515:-36410	Msa1401410:CDS
CGGTCAATAATCCTCCTAAT+AGG	0.355854	tig0022515:-36217	Msa1401410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGGTATACAAACCATTCT+CGG	+	tig0022515:36421-36440	None:intergenic	30.0%
TACCAGTTTCTTCATCAAAA+AGG	+	tig0022515:36458-36477	None:intergenic	30.0%
AGCATGGATCAGAAATACAT+AGG	-	tig0022515:36513-36532	Msa1401410:intron	35.0%
GCATGGATCAGAAATACATA+GGG	-	tig0022515:36514-36533	Msa1401410:intron	35.0%
GAGATTGGAGTTGAAGTCAA+TGG	-	tig0022515:36193-36212	Msa1401410:CDS	40.0%
GATCAGAAATACATAGGGAG+AGG	-	tig0022515:36519-36538	Msa1401410:intron	40.0%
AGAAATACATAGGGAGAGGA+TGG	-	tig0022515:36523-36542	Msa1401410:intron	40.0%
CGGTCAATAATCCTCCTAAT+AGG	-	tig0022515:36598-36617	Msa1401410:CDS	40.0%
GTAGCATACATCCTATTAGG+AGG	+	tig0022515:36612-36631	None:intergenic	40.0%
ACGGTAGCATACATCCTATT+AGG	+	tig0022515:36615-36634	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022515	gene	36187	36650	36187	ID=Msa1401410;Name=Msa1401410
tig0022515	mRNA	36187	36650	36187	ID=Msa1401410-mRNA-1;Parent=Msa1401410;Name=Msa1401410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|1\|1\|2\|0\|122
tig0022515	exon	36534	36650	36534	ID=Msa1401410-mRNA-1:exon:18336;Parent=Msa1401410-mRNA-1
tig0022515	exon	36187	36438	36187	ID=Msa1401410-mRNA-1:exon:18335;Parent=Msa1401410-mRNA-1
tig0022515	CDS	36534	36650	36534	ID=Msa1401410-mRNA-1:cds;Parent=Msa1401410-mRNA-1
tig0022515	CDS	36187	36438	36187	ID=Msa1401410-mRNA-1:cds;Parent=Msa1401410-mRNA-1

Gene Sequence	>Msa1401410 ATGAATGAGATTGGAGTTGAAGTCAATGGTGCTGAATTAGGGAATCTTCAAAATTCCGATGTTCATTATTGGAAGTATAATGTTACTGCTTCTATTTTGGATGGAAACAATGTTTTGAATTTTCCTCGACGTGTTGCCGAGAATGGTTTGTATACCAATCAATCTAAAATTCTCCTTTTTGATGAAGAAACTGGTAAATCTTATGACTGTGATGTTCACACTGCGTCAAGAAGCATGGATCAGAAATACATAGGGAGAGGATGGTACGACTTTGTTCTTGAAAAGTGCCTAAAAGTTGGTGATGTTGTTTTGTTCACGGTCAATAATCCTCCTAATAGGATGTATGCTACCGTCGTTAACTGGGACTGA
Protein sequence	>Msa1401410 MNEIGVEVNGAELGNLQNSDVHYWKYNVTASILDGNNVLNFPRRVAENGLYTNQSKILLFDEETGKSYDCDVHTASRSMDQKYIGRGWYDFVLEKCLKVGDVVLFTVNNPPNRMYATVVNWD*