Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401660 | KEH39580.1 | 48.930 | 327 | 116 | 8 | 4 | 296 | 47 | 356 | 1.04e-82 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401660 | sp|Q5KQI4|Y5814_ORYSJ | 62.500 | 96 | 36 | 0 | 19 | 114 | 113 | 208 | 1.88e-39 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401660 | A0A072VN61 | 48.930 | 327 | 116 | 8 | 4 | 296 | 47 | 356 | 4.95e-83 | 263 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1401660 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401660 | MtrunA17_Chr2g0332121 | 48.930 | 327 | 116 | 8 | 4 | 296 | 101 | 410 | 2.60e-86 | 264 |
| Msa1401660 | MtrunA17_Chr4g0002411 | 67.619 | 105 | 34 | 0 | 10 | 114 | 45 | 149 | 5.35e-47 | 155 |
| Msa1401660 | MtrunA17_Chr4g0056751 | 72.340 | 94 | 20 | 1 | 183 | 276 | 112 | 199 | 6.46e-34 | 125 |
| Msa1401660 | MtrunA17_Chr3g0133791 | 45.833 | 96 | 52 | 0 | 19 | 114 | 108 | 203 | 1.18e-24 | 99.4 |
| Msa1401660 | MtrunA17_Chr8g0375001 | 53.659 | 82 | 38 | 0 | 31 | 112 | 34 | 115 | 2.27e-24 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401660 | AT5G58280.1 | 55.556 | 108 | 48 | 0 | 7 | 114 | 89 | 196 | 8.12e-36 | 130 |
| Msa1401660 | AT5G58280.2 | 55.556 | 108 | 48 | 0 | 7 | 114 | 122 | 229 | 1.18e-35 | 130 |
| Msa1401660 | AT5G58280.3 | 55.556 | 108 | 48 | 0 | 7 | 114 | 121 | 228 | 1.22e-35 | 130 |
| Msa1401660 | AT3G19184.1 | 46.875 | 96 | 51 | 0 | 19 | 114 | 104 | 199 | 3.47e-22 | 94.0 |
| Msa1401660 | AT3G19184.2 | 46.875 | 96 | 51 | 0 | 19 | 114 | 104 | 199 | 4.27e-22 | 94.0 |
| Msa1401660 | AT5G42700.1 | 44.681 | 94 | 52 | 0 | 19 | 112 | 104 | 197 | 6.54e-22 | 92.0 |
| Msa1401660 | AT5G42700.2 | 44.681 | 94 | 52 | 0 | 19 | 112 | 59 | 152 | 6.86e-22 | 90.9 |
Find 44 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCATTCTTACCTTCTT+TGG | 0.170238 | tig0022713:+37212 | None:intergenic |
| TCAATTTGTTCTTCCCCTTT+TGG | 0.185000 | tig0022713:+37396 | None:intergenic |
| ATTTGCATTGGAACATAAAT+TGG | 0.189949 | tig0022713:-37865 | Msa1401660:CDS |
| CCATTCTTCTTGCGCGTGTT+AGG | 0.308971 | tig0022713:+37123 | None:intergenic |
| CATGTGCTTGCTTCACCATC+TGG | 0.323630 | tig0022713:+37060 | None:intergenic |
| TAAAACTGAACTGCTTCTAT+TGG | 0.326579 | tig0022713:-37172 | Msa1401660:CDS |
| AATATTAGTAACATGGCTAT+TGG | 0.329071 | tig0022713:-38343 | None:intergenic |
| CTCCTGACTCTAAGTCAAAA+GGG | 0.381899 | tig0022713:-37509 | Msa1401660:CDS |
| GACTTAGAGTCAGGAGTAGT+AGG | 0.391020 | tig0022713:+37516 | None:intergenic |
| TCTTCCAGGGTCTTCCTAGT+AGG | 0.396253 | tig0022713:-38007 | Msa1401660:intron |
| ACCATTGACTTGATAAATGA+TGG | 0.398569 | tig0022713:+38205 | None:intergenic |
| CCTAACACGCGCAAGAAGAA+TGG | 0.412184 | tig0022713:-37123 | Msa1401660:CDS |
| GAGTATGATGTTGTCTATAT+TGG | 0.436717 | tig0022713:-37921 | Msa1401660:CDS |
| ACTCCTGACTCTAAGTCAAA+AGG | 0.442221 | tig0022713:-37510 | Msa1401660:CDS |
| GTCTATATTGGCAGTAGAAG+TGG | 0.481140 | tig0022713:-37909 | Msa1401660:CDS |
| TCAACTTGTGCTTCACAAGT+TGG | 0.481970 | tig0022713:+37285 | None:intergenic |
| AACAACAAAGAACTCGTGCT+TGG | 0.497832 | tig0022713:-38270 | Msa1401660:CDS |
| TCCATCATTTATCAAGTCAA+TGG | 0.499589 | tig0022713:-38206 | Msa1401660:CDS |
| TGTTCCTCACAAAACCTACT+AGG | 0.504504 | tig0022713:+37993 | None:intergenic |
| AAGTCAATGGTCCGGTCTCA+TGG | 0.512045 | tig0022713:-38193 | Msa1401660:CDS |
| GCTACTACTCCTGATCCAAA+AGG | 0.514593 | tig0022713:-37411 | Msa1401660:CDS |
| ACAAAGAACTCGTGCTTGGA+AGG | 0.515051 | tig0022713:-38266 | Msa1401660:CDS |
| CTACTACTCCTGATCCAAAA+GGG | 0.521002 | tig0022713:-37410 | Msa1401660:CDS |
| CTAACACGCGCAAGAAGAAT+GGG | 0.523922 | tig0022713:-37122 | Msa1401660:CDS |
| GACTCTTTAGTTACGTTGCA+AGG | 0.524631 | tig0022713:-38321 | Msa1401660:CDS |
| AATTGAAATTGTTGAAGCAA+AGG | 0.524896 | tig0022713:-37379 | Msa1401660:CDS |
| GAAGTGGGCTAAGTGGTGGC+TGG | 0.540038 | tig0022713:-37893 | Msa1401660:CDS |
| GGGCTAAGTGGTGGCTGGAG+AGG | 0.544907 | tig0022713:-37888 | Msa1401660:CDS |
| CATTTATCAAGTCAATGGTC+CGG | 0.559658 | tig0022713:-38201 | Msa1401660:CDS |
| AACAGCTAAAACCATGAGAC+CGG | 0.566641 | tig0022713:+38182 | None:intergenic |
| TTTAGAGGATGAAAATGGCT+CGG | 0.571858 | tig0022713:-37943 | Msa1401660:CDS |
| TCGTGCTTGGAAGGCTGCAG+AGG | 0.573588 | tig0022713:-38257 | Msa1401660:CDS |
| TCTATATTGGCAGTAGAAGT+GGG | 0.573838 | tig0022713:-37908 | Msa1401660:CDS |
| AAGACAAGGAAGTCCAAAGA+AGG | 0.577361 | tig0022713:-37225 | Msa1401660:CDS |
| TTGGAACATAAATTGGATGA+TGG | 0.579994 | tig0022713:-37858 | Msa1401660:intron |
| GGCAGTAGAAGTGGGCTAAG+TGG | 0.585137 | tig0022713:-37900 | Msa1401660:CDS |
| TTAATGAAAGTTAAGCCAGA+TGG | 0.605559 | tig0022713:-37075 | Msa1401660:CDS |
| TGGCTGGAGAGGATTTGCAT+TGG | 0.612968 | tig0022713:-37877 | Msa1401660:CDS |
| TCCTGACTCTAAGTCAAAAG+GGG | 0.616375 | tig0022713:-37508 | Msa1401660:CDS |
| TTAGAGTCAGGAGTAGTAGG+TGG | 0.638133 | tig0022713:+37519 | None:intergenic |
| TACTACTCCTGATCCAAAAG+GGG | 0.651841 | tig0022713:-37409 | Msa1401660:CDS |
| TAAAATTGTCAAACAAGACA+AGG | 0.658988 | tig0022713:-37239 | Msa1401660:CDS |
| AGTTGAAACTGTGAAACCAA+AGG | 0.667404 | tig0022713:-37268 | Msa1401660:CDS |
| AGTAGAAGTGGGCTAAGTGG+TGG | 0.694572 | tig0022713:-37897 | Msa1401660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GACAAATAAATATAATATTT+TGG | + | tig0022713:37301-37320 | None:intergenic | 10.0% |
| !!! | GACAAATAAATATAATATTT+TGG | + | tig0022713:37301-37320 | None:intergenic | 10.0% |
| !!! | GTTCAGAATATTTTTCTATA+TGG | - | tig0022713:37192-37211 | Msa1401660:CDS | 20.0% |
| !! | TAAAAAGAATGTACAAAACA+TGG | + | tig0022713:37233-37252 | None:intergenic | 20.0% |
| !!! | GTTCAGAATATTTTTCTATA+TGG | - | tig0022713:37192-37211 | Msa1401660:CDS | 20.0% |
| !! | TAAAAAGAATGTACAAAACA+TGG | + | tig0022713:37233-37252 | None:intergenic | 20.0% |
| ! | TTATTTGTCTTTATTCTTCC+AGG | - | tig0022713:37312-37331 | Msa1401660:CDS | 25.0% |
| ! | TATTTGTCTTTATTCTTCCA+GGG | - | tig0022713:37313-37332 | Msa1401660:CDS | 25.0% |
| !!! | ATGATTTTAGAGGATGAAAA+TGG | - | tig0022713:37385-37404 | Msa1401660:CDS | 25.0% |
| ! | ATTTGCATTGGAACATAAAT+TGG | - | tig0022713:37468-37487 | Msa1401660:CDS | 25.0% |
| !!! | TGATGCACTTGTTTTTTAAT+CGG | - | tig0022713:37498-37517 | Msa1401660:CDS | 25.0% |
| !!! | GAAGATTTAGTTTTTCCATT+CGG | + | tig0022713:37768-37787 | None:intergenic | 25.0% |
| ! | AATTGAAATTGTTGAAGCAA+AGG | - | tig0022713:37954-37973 | Msa1401660:CDS | 25.0% |
| ! | TAAAATTGTCAAACAAGACA+AGG | - | tig0022713:38094-38113 | Msa1401660:intron | 25.0% |
| ! | TTATTTGTCTTTATTCTTCC+AGG | - | tig0022713:37312-37331 | Msa1401660:CDS | 25.0% |
| ! | TATTTGTCTTTATTCTTCCA+GGG | - | tig0022713:37313-37332 | Msa1401660:CDS | 25.0% |
| !!! | ATGATTTTAGAGGATGAAAA+TGG | - | tig0022713:37385-37404 | Msa1401660:CDS | 25.0% |
| ! | ATTTGCATTGGAACATAAAT+TGG | - | tig0022713:37468-37487 | Msa1401660:CDS | 25.0% |
| !!! | TGATGCACTTGTTTTTTAAT+CGG | - | tig0022713:37498-37517 | Msa1401660:CDS | 25.0% |
| !!! | GAAGATTTAGTTTTTCCATT+CGG | + | tig0022713:37768-37787 | None:intergenic | 25.0% |
| ! | AATTGAAATTGTTGAAGCAA+AGG | - | tig0022713:37954-37973 | Msa1401660:CDS | 25.0% |
| ! | TAAAATTGTCAAACAAGACA+AGG | - | tig0022713:38094-38113 | Msa1401660:intron | 25.0% |
| !!! | GCTTTTTCGATTTCATCTAT+TGG | + | tig0022713:37038-37057 | None:intergenic | 30.0% |
| TCCATCATTTATCAAGTCAA+TGG | - | tig0022713:37127-37146 | Msa1401660:CDS | 30.0% | |
| !! | ACCATTGACTTGATAAATGA+TGG | + | tig0022713:37131-37150 | None:intergenic | 30.0% |
| ! | ATCATGTTATGCACTGTTTT+TGG | + | tig0022713:37370-37389 | None:intergenic | 30.0% |
| ! | AGTGCATAACATGATTTTAG+AGG | - | tig0022713:37375-37394 | Msa1401660:CDS | 30.0% |
| GAGTATGATGTTGTCTATAT+TGG | - | tig0022713:37412-37431 | Msa1401660:CDS | 30.0% | |
| TTGGAACATAAATTGGATGA+TGG | - | tig0022713:37475-37494 | Msa1401660:CDS | 30.0% | |
| !! | AAGCTTTGAAAGGACTAATT+TGG | + | tig0022713:37602-37621 | None:intergenic | 30.0% |
| GTTTCGCATAAATTGGAATA+AGG | + | tig0022713:37669-37688 | None:intergenic | 30.0% | |
| TTCCAATTTATGCGAAACTA+AGG | - | tig0022713:37671-37690 | Msa1401660:intron | 30.0% | |
| TTCCTTAGTTTCGCATAAAT+TGG | + | tig0022713:37676-37695 | None:intergenic | 30.0% | |
| ! | GTTTTCTTTATAGCTGTCTT+TGG | + | tig0022713:37874-37893 | None:intergenic | 30.0% |
| ACATTCATTCTTACCTTCTT+TGG | + | tig0022713:38124-38143 | None:intergenic | 30.0% | |
| TAAAACTGAACTGCTTCTAT+TGG | - | tig0022713:38161-38180 | Msa1401660:intron | 30.0% | |
| TTAATGAAAGTTAAGCCAGA+TGG | - | tig0022713:38258-38277 | Msa1401660:CDS | 30.0% | |
| !!! | GCTTTTTCGATTTCATCTAT+TGG | + | tig0022713:37038-37057 | None:intergenic | 30.0% |
| TCCATCATTTATCAAGTCAA+TGG | - | tig0022713:37127-37146 | Msa1401660:CDS | 30.0% | |
| !! | ACCATTGACTTGATAAATGA+TGG | + | tig0022713:37131-37150 | None:intergenic | 30.0% |
| ! | ATCATGTTATGCACTGTTTT+TGG | + | tig0022713:37370-37389 | None:intergenic | 30.0% |
| ! | AGTGCATAACATGATTTTAG+AGG | - | tig0022713:37375-37394 | Msa1401660:CDS | 30.0% |
| GAGTATGATGTTGTCTATAT+TGG | - | tig0022713:37412-37431 | Msa1401660:CDS | 30.0% | |
| TTGGAACATAAATTGGATGA+TGG | - | tig0022713:37475-37494 | Msa1401660:CDS | 30.0% | |
| !! | AAGCTTTGAAAGGACTAATT+TGG | + | tig0022713:37602-37621 | None:intergenic | 30.0% |
| GTTTCGCATAAATTGGAATA+AGG | + | tig0022713:37669-37688 | None:intergenic | 30.0% | |
| TTCCAATTTATGCGAAACTA+AGG | - | tig0022713:37671-37690 | Msa1401660:intron | 30.0% | |
| TTCCTTAGTTTCGCATAAAT+TGG | + | tig0022713:37676-37695 | None:intergenic | 30.0% | |
| ! | GTTTTCTTTATAGCTGTCTT+TGG | + | tig0022713:37874-37893 | None:intergenic | 30.0% |
| ACATTCATTCTTACCTTCTT+TGG | + | tig0022713:38124-38143 | None:intergenic | 30.0% | |
| TAAAACTGAACTGCTTCTAT+TGG | - | tig0022713:38161-38180 | Msa1401660:intron | 30.0% | |
| TTAATGAAAGTTAAGCCAGA+TGG | - | tig0022713:38258-38277 | Msa1401660:CDS | 30.0% | |
| CATTTATCAAGTCAATGGTC+CGG | - | tig0022713:37132-37151 | Msa1401660:CDS | 35.0% | |
| !!! | CTCATGGTTTTAGCTGTTTT+TGG | - | tig0022713:37156-37175 | Msa1401660:CDS | 35.0% |
| !!! | TGGTTTTAGCTGTTTTTGGT+TGG | - | tig0022713:37160-37179 | Msa1401660:CDS | 35.0% |
| AAACATGGATAAGAATGTGC+AGG | + | tig0022713:37218-37237 | None:intergenic | 35.0% | |
| TTTAGAGGATGAAAATGGCT+CGG | - | tig0022713:37390-37409 | Msa1401660:CDS | 35.0% | |
| TCTATATTGGCAGTAGAAGT+GGG | - | tig0022713:37425-37444 | Msa1401660:CDS | 35.0% | |
| TATGAAGAAAGTCTGCTAGA+AGG | - | tig0022713:37705-37724 | Msa1401660:intron | 35.0% | |
| ACAAAGAATTCAAACCACAG+AGG | - | tig0022713:37736-37755 | Msa1401660:intron | 35.0% | |
| CAAAGAATTCAAACCACAGA+GGG | - | tig0022713:37737-37756 | Msa1401660:intron | 35.0% | |
| !! | TCAATTTGTTCTTCCCCTTT+TGG | + | tig0022713:37940-37959 | None:intergenic | 35.0% |
| AGTTGAAACTGTGAAACCAA+AGG | - | tig0022713:38065-38084 | Msa1401660:intron | 35.0% | |
| ! | GACAATTTTATAGCTGCCTT+TGG | + | tig0022713:38084-38103 | None:intergenic | 35.0% |
| !!! | TTATGCGCTGATTTTTTTCG+AGG | + | tig0022713:38312-38331 | None:intergenic | 35.0% |
| CATTTATCAAGTCAATGGTC+CGG | - | tig0022713:37132-37151 | Msa1401660:CDS | 35.0% | |
| !!! | CTCATGGTTTTAGCTGTTTT+TGG | - | tig0022713:37156-37175 | Msa1401660:CDS | 35.0% |
| !!! | TGGTTTTAGCTGTTTTTGGT+TGG | - | tig0022713:37160-37179 | Msa1401660:CDS | 35.0% |
| AAACATGGATAAGAATGTGC+AGG | + | tig0022713:37218-37237 | None:intergenic | 35.0% | |
| TTTAGAGGATGAAAATGGCT+CGG | - | tig0022713:37390-37409 | Msa1401660:CDS | 35.0% | |
| TCTATATTGGCAGTAGAAGT+GGG | - | tig0022713:37425-37444 | Msa1401660:CDS | 35.0% | |
| TATGAAGAAAGTCTGCTAGA+AGG | - | tig0022713:37705-37724 | Msa1401660:intron | 35.0% | |
| ACAAAGAATTCAAACCACAG+AGG | - | tig0022713:37736-37755 | Msa1401660:intron | 35.0% | |
| CAAAGAATTCAAACCACAGA+GGG | - | tig0022713:37737-37756 | Msa1401660:intron | 35.0% | |
| !! | TCAATTTGTTCTTCCCCTTT+TGG | + | tig0022713:37940-37959 | None:intergenic | 35.0% |
| AGTTGAAACTGTGAAACCAA+AGG | - | tig0022713:38065-38084 | Msa1401660:intron | 35.0% | |
| ! | GACAATTTTATAGCTGCCTT+TGG | + | tig0022713:38084-38103 | None:intergenic | 35.0% |
| !!! | TTATGCGCTGATTTTTTTCG+AGG | + | tig0022713:38312-38331 | None:intergenic | 35.0% |
| GACTCTTTAGTTACGTTGCA+AGG | - | tig0022713:37012-37031 | Msa1401660:CDS | 40.0% | |
| AACAACAAAGAACTCGTGCT+TGG | - | tig0022713:37063-37082 | Msa1401660:CDS | 40.0% | |
| AACAGCTAAAACCATGAGAC+CGG | + | tig0022713:37154-37173 | None:intergenic | 40.0% | |
| !! | TCTTCCTAGTAGGTTTTGTG+AGG | - | tig0022713:37336-37355 | Msa1401660:CDS | 40.0% |
| TGTTCCTCACAAAACCTACT+AGG | + | tig0022713:37343-37362 | None:intergenic | 40.0% | |
| GTCTATATTGGCAGTAGAAG+TGG | - | tig0022713:37424-37443 | Msa1401660:CDS | 40.0% | |
| ! | CAACTCTCGTTTAACTTCGA+AGG | - | tig0022713:37566-37585 | Msa1401660:intron | 40.0% |
| !! | AGGAACGCTTAAGCTTTGAA+AGG | + | tig0022713:37612-37631 | None:intergenic | 40.0% |
| AAAAGCTAGCTCAAGAGGTA+AGG | + | tig0022713:37632-37651 | None:intergenic | 40.0% | |
| !!! | TTACCTCTTGAGCTAGCTTT+TGG | - | tig0022713:37631-37650 | Msa1401660:intron | 40.0% |
| ACTCCTGACTCTAAGTCAAA+AGG | - | tig0022713:37823-37842 | Msa1401660:intron | 40.0% | |
| CTCCTGACTCTAAGTCAAAA+GGG | - | tig0022713:37824-37843 | Msa1401660:intron | 40.0% | |
| TCCTGACTCTAAGTCAAAAG+GGG | - | tig0022713:37825-37844 | Msa1401660:intron | 40.0% | |
| CTACTACTCCTGATCCAAAA+GGG | - | tig0022713:37923-37942 | Msa1401660:CDS | 40.0% | |
| TACTACTCCTGATCCAAAAG+GGG | - | tig0022713:37924-37943 | Msa1401660:CDS | 40.0% | |
| TCAACTTGTGCTTCACAAGT+TGG | + | tig0022713:38051-38070 | None:intergenic | 40.0% | |
| AAGACAAGGAAGTCCAAAGA+AGG | - | tig0022713:38108-38127 | Msa1401660:intron | 40.0% | |
| GACTCTTTAGTTACGTTGCA+AGG | - | tig0022713:37012-37031 | Msa1401660:CDS | 40.0% | |
| AACAACAAAGAACTCGTGCT+TGG | - | tig0022713:37063-37082 | Msa1401660:CDS | 40.0% | |
| AACAGCTAAAACCATGAGAC+CGG | + | tig0022713:37154-37173 | None:intergenic | 40.0% | |
| !! | TCTTCCTAGTAGGTTTTGTG+AGG | - | tig0022713:37336-37355 | Msa1401660:CDS | 40.0% |
| TGTTCCTCACAAAACCTACT+AGG | + | tig0022713:37343-37362 | None:intergenic | 40.0% | |
| GTCTATATTGGCAGTAGAAG+TGG | - | tig0022713:37424-37443 | Msa1401660:CDS | 40.0% | |
| ! | CAACTCTCGTTTAACTTCGA+AGG | - | tig0022713:37566-37585 | Msa1401660:intron | 40.0% |
| !! | AGGAACGCTTAAGCTTTGAA+AGG | + | tig0022713:37612-37631 | None:intergenic | 40.0% |
| AAAAGCTAGCTCAAGAGGTA+AGG | + | tig0022713:37632-37651 | None:intergenic | 40.0% | |
| !!! | TTACCTCTTGAGCTAGCTTT+TGG | - | tig0022713:37631-37650 | Msa1401660:intron | 40.0% |
| ACTCCTGACTCTAAGTCAAA+AGG | - | tig0022713:37823-37842 | Msa1401660:intron | 40.0% | |
| CTCCTGACTCTAAGTCAAAA+GGG | - | tig0022713:37824-37843 | Msa1401660:intron | 40.0% | |
| TCCTGACTCTAAGTCAAAAG+GGG | - | tig0022713:37825-37844 | Msa1401660:intron | 40.0% | |
| CTACTACTCCTGATCCAAAA+GGG | - | tig0022713:37923-37942 | Msa1401660:CDS | 40.0% | |
| TACTACTCCTGATCCAAAAG+GGG | - | tig0022713:37924-37943 | Msa1401660:CDS | 40.0% | |
| TCAACTTGTGCTTCACAAGT+TGG | + | tig0022713:38051-38070 | None:intergenic | 40.0% | |
| AAGACAAGGAAGTCCAAAGA+AGG | - | tig0022713:38108-38127 | Msa1401660:intron | 40.0% | |
| ACAAAGAACTCGTGCTTGGA+AGG | - | tig0022713:37067-37086 | Msa1401660:CDS | 45.0% | |
| AAAACCTACTAGGAAGACCC+TGG | + | tig0022713:37333-37352 | None:intergenic | 45.0% | |
| GGTTGAAGCGACGAGATTTA+AGG | - | tig0022713:37519-37538 | Msa1401660:CDS | 45.0% | |
| TTAGAGTCAGGAGTAGTAGG+TGG | + | tig0022713:37817-37836 | None:intergenic | 45.0% | |
| GACTTAGAGTCAGGAGTAGT+AGG | + | tig0022713:37820-37839 | None:intergenic | 45.0% | |
| !!! | TCCCCTTTTGACTTAGAGTC+AGG | + | tig0022713:37829-37848 | None:intergenic | 45.0% |
| GCTACTACTCCTGATCCAAA+AGG | - | tig0022713:37922-37941 | Msa1401660:CDS | 45.0% | |
| ! | TGTTCTTCCCCTTTTGGATC+AGG | + | tig0022713:37934-37953 | None:intergenic | 45.0% |
| CTAACACGCGCAAGAAGAAT+GGG | - | tig0022713:38211-38230 | Msa1401660:CDS | 45.0% | |
| ACAAAGAACTCGTGCTTGGA+AGG | - | tig0022713:37067-37086 | Msa1401660:CDS | 45.0% | |
| AAAACCTACTAGGAAGACCC+TGG | + | tig0022713:37333-37352 | None:intergenic | 45.0% | |
| GGTTGAAGCGACGAGATTTA+AGG | - | tig0022713:37519-37538 | Msa1401660:CDS | 45.0% | |
| TTAGAGTCAGGAGTAGTAGG+TGG | + | tig0022713:37817-37836 | None:intergenic | 45.0% | |
| GACTTAGAGTCAGGAGTAGT+AGG | + | tig0022713:37820-37839 | None:intergenic | 45.0% | |
| !!! | TCCCCTTTTGACTTAGAGTC+AGG | + | tig0022713:37829-37848 | None:intergenic | 45.0% |
| GCTACTACTCCTGATCCAAA+AGG | - | tig0022713:37922-37941 | Msa1401660:CDS | 45.0% | |
| ! | TGTTCTTCCCCTTTTGGATC+AGG | + | tig0022713:37934-37953 | None:intergenic | 45.0% |
| CTAACACGCGCAAGAAGAAT+GGG | - | tig0022713:38211-38230 | Msa1401660:CDS | 45.0% | |
| AAGTCAATGGTCCGGTCTCA+TGG | - | tig0022713:37140-37159 | Msa1401660:CDS | 50.0% | |
| TCTTCCAGGGTCTTCCTAGT+AGG | - | tig0022713:37326-37345 | Msa1401660:CDS | 50.0% | |
| !! | AGTAGAAGTGGGCTAAGTGG+TGG | - | tig0022713:37436-37455 | Msa1401660:CDS | 50.0% |
| TGGCTGGAGAGGATTTGCAT+TGG | - | tig0022713:37456-37475 | Msa1401660:CDS | 50.0% | |
| ACGCCAAAAGCTAGCTCAAG+AGG | + | tig0022713:37637-37656 | None:intergenic | 50.0% | |
| ! | CCATTCGGATTTTCCCTCTG+TGG | + | tig0022713:37753-37772 | None:intergenic | 50.0% |
| CCACAGAGGGAAAATCCGAA+TGG | - | tig0022713:37750-37769 | Msa1401660:intron | 50.0% | |
| CCATTCTTCTTGCGCGTGTT+AGG | + | tig0022713:38213-38232 | None:intergenic | 50.0% | |
| CCTAACACGCGCAAGAAGAA+TGG | - | tig0022713:38210-38229 | Msa1401660:CDS | 50.0% | |
| CATGTGCTTGCTTCACCATC+TGG | + | tig0022713:38276-38295 | None:intergenic | 50.0% | |
| AAGTCAATGGTCCGGTCTCA+TGG | - | tig0022713:37140-37159 | Msa1401660:CDS | 50.0% | |
| TCTTCCAGGGTCTTCCTAGT+AGG | - | tig0022713:37326-37345 | Msa1401660:CDS | 50.0% | |
| !! | AGTAGAAGTGGGCTAAGTGG+TGG | - | tig0022713:37436-37455 | Msa1401660:CDS | 50.0% |
| TGGCTGGAGAGGATTTGCAT+TGG | - | tig0022713:37456-37475 | Msa1401660:CDS | 50.0% | |
| ACGCCAAAAGCTAGCTCAAG+AGG | + | tig0022713:37637-37656 | None:intergenic | 50.0% | |
| ! | CCATTCGGATTTTCCCTCTG+TGG | + | tig0022713:37753-37772 | None:intergenic | 50.0% |
| CCACAGAGGGAAAATCCGAA+TGG | - | tig0022713:37750-37769 | Msa1401660:intron | 50.0% | |
| CCATTCTTCTTGCGCGTGTT+AGG | + | tig0022713:38213-38232 | None:intergenic | 50.0% | |
| CCTAACACGCGCAAGAAGAA+TGG | - | tig0022713:38210-38229 | Msa1401660:CDS | 50.0% | |
| CATGTGCTTGCTTCACCATC+TGG | + | tig0022713:38276-38295 | None:intergenic | 50.0% | |
| !! | GGCAGTAGAAGTGGGCTAAG+TGG | - | tig0022713:37433-37452 | Msa1401660:CDS | 55.0% |
| !! | GGCAGTAGAAGTGGGCTAAG+TGG | - | tig0022713:37433-37452 | Msa1401660:CDS | 55.0% |
| TCGTGCTTGGAAGGCTGCAG+AGG | - | tig0022713:37076-37095 | Msa1401660:CDS | 60.0% | |
| !! | GAAGTGGGCTAAGTGGTGGC+TGG | - | tig0022713:37440-37459 | Msa1401660:CDS | 60.0% |
| TCGTGCTTGGAAGGCTGCAG+AGG | - | tig0022713:37076-37095 | Msa1401660:CDS | 60.0% | |
| !! | GAAGTGGGCTAAGTGGTGGC+TGG | - | tig0022713:37440-37459 | Msa1401660:CDS | 60.0% |
| GGGCTAAGTGGTGGCTGGAG+AGG | - | tig0022713:37445-37464 | Msa1401660:CDS | 65.0% | |
| GGGCTAAGTGGTGGCTGGAG+AGG | - | tig0022713:37445-37464 | Msa1401660:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022713 | gene | 37002 | 38353 | 37002 | ID=Msa1401660;Name=Msa1401660 |
| tig0022713 | mRNA | 37002 | 38353 | 37002 | ID=Msa1401660-mRNA-1;Parent=Msa1401660;Name=Msa1401660-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0|0|1|0.5|0.33|3|0|296 |
| tig0022713 | exon | 38174 | 38353 | 38174 | ID=Msa1401660-mRNA-1:exon:18499;Parent=Msa1401660-mRNA-1 |
| tig0022713 | exon | 37859 | 38021 | 37859 | ID=Msa1401660-mRNA-1:exon:18498;Parent=Msa1401660-mRNA-1 |
| tig0022713 | exon | 37002 | 37549 | 37002 | ID=Msa1401660-mRNA-1:exon:18497;Parent=Msa1401660-mRNA-1 |
| tig0022713 | CDS | 38174 | 38353 | 38174 | ID=Msa1401660-mRNA-1:cds;Parent=Msa1401660-mRNA-1 |
| tig0022713 | CDS | 37859 | 38021 | 37859 | ID=Msa1401660-mRNA-1:cds;Parent=Msa1401660-mRNA-1 |
| tig0022713 | CDS | 37002 | 37549 | 37002 | ID=Msa1401660-mRNA-1:cds;Parent=Msa1401660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
