Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401900 | XP_004505405.1 | 79.325 | 237 | 37 | 2 | 1 | 228 | 1 | 234 | 3.47e-123 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401900 | sp|Q9FJK3|AGL80_ARATH | 69.231 | 156 | 48 | 0 | 1 | 156 | 1 | 156 | 9.09e-68 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401900 | A0A1S2YJE0 | 79.325 | 237 | 37 | 2 | 1 | 228 | 1 | 234 | 1.66e-123 | 359 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1401900 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401900 | MtrunA17_Chr3g0110131 | 76.033 | 242 | 40 | 4 | 1 | 226 | 1 | 240 | 8.57e-115 | 328 |
| Msa1401900 | MtrunA17_Chr8g0351751 | 56.098 | 246 | 84 | 7 | 1 | 224 | 1 | 244 | 1.14e-81 | 244 |
| Msa1401900 | MtrunA17_Chr3g0107381 | 53.846 | 234 | 84 | 6 | 1 | 223 | 1 | 221 | 2.37e-79 | 237 |
| Msa1401900 | MtrunA17_Chr4g0014321 | 50.649 | 231 | 104 | 5 | 1 | 224 | 1 | 228 | 5.09e-71 | 216 |
| Msa1401900 | MtrunA17_Chr4g0014031 | 48.291 | 234 | 103 | 5 | 1 | 224 | 1 | 226 | 1.32e-62 | 195 |
| Msa1401900 | MtrunA17_Chr4g0013041 | 61.039 | 154 | 57 | 2 | 1 | 153 | 1 | 152 | 6.25e-62 | 192 |
| Msa1401900 | MtrunA17_Chr4g0014131 | 49.160 | 238 | 97 | 5 | 1 | 224 | 1 | 228 | 1.81e-61 | 192 |
| Msa1401900 | MtrunA17_Chr3g0107331 | 53.896 | 154 | 71 | 0 | 3 | 156 | 2 | 155 | 9.38e-55 | 172 |
| Msa1401900 | MtrunA17_Chr4g0014121 | 61.290 | 155 | 59 | 1 | 1 | 154 | 29 | 183 | 3.48e-54 | 172 |
| Msa1401900 | MtrunA17_Chr2g0296831 | 67.213 | 122 | 40 | 0 | 1 | 122 | 1 | 122 | 5.48e-52 | 164 |
| Msa1401900 | MtrunA17_Chr5g0420351 | 51.282 | 156 | 75 | 1 | 1 | 156 | 1 | 155 | 4.70e-50 | 160 |
| Msa1401900 | MtrunA17_Chr3g0107461 | 50.955 | 157 | 70 | 2 | 1 | 153 | 1 | 154 | 2.20e-49 | 159 |
| Msa1401900 | MtrunA17_Chr3g0107351 | 50.000 | 154 | 77 | 0 | 3 | 156 | 2 | 155 | 2.89e-49 | 158 |
| Msa1401900 | MtrunA17_Chr3g0107341 | 50.000 | 154 | 77 | 0 | 3 | 156 | 2 | 155 | 1.61e-47 | 154 |
| Msa1401900 | MtrunA17_Chr3g0107361 | 50.000 | 154 | 77 | 0 | 3 | 156 | 2 | 155 | 1.81e-47 | 154 |
| Msa1401900 | MtrunA17_Chr5g0432691 | 43.210 | 162 | 92 | 0 | 1 | 162 | 1 | 162 | 2.35e-46 | 151 |
| Msa1401900 | MtrunA17_Chr2g0283941 | 45.679 | 162 | 87 | 1 | 1 | 161 | 1 | 162 | 2.49e-43 | 146 |
| Msa1401900 | MtrunA17_Chr7g0218151 | 52.229 | 157 | 74 | 1 | 1 | 157 | 1 | 156 | 9.27e-43 | 142 |
| Msa1401900 | MtrunA17_Chr1g0188681 | 47.134 | 157 | 82 | 1 | 1 | 157 | 1 | 156 | 1.64e-42 | 141 |
| Msa1401900 | MtrunA17_Chr1g0193311 | 51.282 | 156 | 75 | 1 | 1 | 156 | 1 | 155 | 1.65e-41 | 138 |
| Msa1401900 | MtrunA17_Chr1g0197261 | 42.308 | 156 | 89 | 1 | 1 | 156 | 1 | 155 | 6.33e-40 | 134 |
| Msa1401900 | MtrunA17_Chr4g0012761 | 49.682 | 157 | 78 | 1 | 1 | 157 | 1 | 156 | 6.49e-40 | 134 |
| Msa1401900 | MtrunA17_Chr4g0031421 | 48.905 | 137 | 69 | 1 | 29 | 164 | 1 | 137 | 7.07e-40 | 134 |
| Msa1401900 | MtrunA17_Chr1g0197461 | 42.208 | 154 | 88 | 1 | 3 | 156 | 2 | 154 | 1.24e-39 | 134 |
| Msa1401900 | MtrunA17_Chr1g0188661 | 48.408 | 157 | 80 | 1 | 1 | 157 | 1 | 156 | 8.24e-39 | 132 |
| Msa1401900 | MtrunA17_Chr3g0105791 | 46.715 | 137 | 72 | 1 | 29 | 164 | 1 | 137 | 1.39e-37 | 128 |
| Msa1401900 | MtrunA17_Chr2g0296861 | 44.805 | 154 | 85 | 0 | 1 | 154 | 1 | 154 | 2.46e-37 | 128 |
| Msa1401900 | MtrunA17_Chr1g0197321 | 39.490 | 157 | 93 | 2 | 1 | 156 | 1 | 156 | 8.98e-36 | 124 |
| Msa1401900 | MtrunA17_Chr1g0188651 | 47.771 | 157 | 79 | 2 | 1 | 157 | 1 | 154 | 2.21e-34 | 120 |
| Msa1401900 | MtrunA17_Chr3g0106421 | 40.876 | 137 | 80 | 1 | 29 | 164 | 1 | 137 | 3.76e-32 | 116 |
| Msa1401900 | MtrunA17_Chr3g0106501 | 37.037 | 135 | 82 | 2 | 29 | 161 | 1 | 134 | 5.05e-24 | 93.6 |
| Msa1401900 | MtrunA17_Chr4g0008701 | 37.594 | 133 | 80 | 1 | 1 | 130 | 1 | 133 | 7.50e-24 | 99.0 |
| Msa1401900 | MtrunA17_Chr7g0267601 | 36.090 | 133 | 82 | 1 | 1 | 130 | 1 | 133 | 8.49e-23 | 95.9 |
| Msa1401900 | MtrunA17_Chr3g0128721 | 28.655 | 171 | 120 | 1 | 3 | 171 | 6 | 176 | 1.35e-21 | 92.8 |
| Msa1401900 | MtrunA17_Chr6g0457851 | 29.730 | 222 | 138 | 8 | 1 | 213 | 11 | 223 | 2.29e-20 | 88.2 |
| Msa1401900 | MtrunA17_Chr6g0449861 | 28.390 | 236 | 136 | 9 | 1 | 223 | 9 | 224 | 7.90e-20 | 86.7 |
| Msa1401900 | MtrunA17_Chr2g0296851 | 54.878 | 82 | 36 | 1 | 74 | 154 | 1 | 82 | 2.61e-18 | 77.0 |
| Msa1401900 | MtrunA17_Chr1g0212151 | 35.398 | 113 | 66 | 3 | 1 | 107 | 1 | 112 | 6.59e-18 | 81.3 |
| Msa1401900 | MtrunA17_Chr6g0449851 | 25.322 | 233 | 138 | 9 | 1 | 223 | 1 | 207 | 3.48e-15 | 73.2 |
| Msa1401900 | MtrunA17_Chr4g0022641 | 31.884 | 138 | 90 | 3 | 1 | 134 | 1 | 138 | 7.04e-14 | 70.1 |
| Msa1401900 | MtrunA17_Chr4g0059631 | 28.777 | 139 | 93 | 4 | 1 | 134 | 1 | 138 | 1.29e-11 | 62.4 |
| Msa1401900 | MtrunA17_Chr1g0162261 | 38.158 | 76 | 46 | 1 | 84 | 158 | 41 | 116 | 1.83e-11 | 59.7 |
| Msa1401900 | MtrunA17_Chr2g0317481 | 27.119 | 236 | 124 | 11 | 3 | 205 | 10 | 230 | 9.66e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401900 | AT5G48670.1 | 69.231 | 156 | 48 | 0 | 1 | 156 | 1 | 156 | 9.24e-69 | 214 |
| Msa1401900 | AT1G65300.1 | 45.349 | 172 | 93 | 1 | 3 | 174 | 2 | 172 | 1.87e-50 | 166 |
| Msa1401900 | AT1G65330.1 | 46.154 | 182 | 93 | 1 | 3 | 184 | 2 | 178 | 3.39e-49 | 162 |
| Msa1401900 | AT3G05860.2 | 52.349 | 149 | 71 | 0 | 1 | 149 | 1 | 149 | 1.70e-48 | 158 |
| Msa1401900 | AT3G05860.3 | 52.349 | 149 | 71 | 0 | 1 | 149 | 1 | 149 | 6.28e-48 | 158 |
| Msa1401900 | AT3G05860.1 | 52.349 | 149 | 71 | 0 | 1 | 149 | 1 | 149 | 1.01e-47 | 158 |
| Msa1401900 | AT5G26630.1 | 45.055 | 182 | 100 | 0 | 1 | 182 | 1 | 182 | 1.92e-46 | 153 |
| Msa1401900 | AT5G26650.1 | 43.094 | 181 | 102 | 1 | 4 | 184 | 2 | 181 | 3.14e-46 | 157 |
| Msa1401900 | AT5G27960.1 | 42.541 | 181 | 103 | 1 | 4 | 184 | 2 | 181 | 3.36e-45 | 153 |
| Msa1401900 | AT1G31630.1 | 40.230 | 174 | 100 | 4 | 3 | 175 | 2 | 172 | 6.15e-42 | 145 |
| Msa1401900 | AT5G27810.1 | 67.742 | 93 | 30 | 0 | 29 | 121 | 1 | 93 | 1.16e-41 | 138 |
| Msa1401900 | AT1G31640.1 | 38.172 | 186 | 106 | 2 | 3 | 180 | 2 | 186 | 4.08e-41 | 146 |
| Msa1401900 | AT5G26580.1 | 39.130 | 184 | 96 | 2 | 1 | 184 | 1 | 168 | 2.19e-35 | 128 |
| Msa1401900 | AT2G28700.1 | 34.031 | 191 | 115 | 3 | 1 | 182 | 1 | 189 | 1.21e-34 | 126 |
| Msa1401900 | AT1G22590.2 | 37.821 | 156 | 88 | 2 | 1 | 153 | 1 | 150 | 6.79e-28 | 104 |
| Msa1401900 | AT2G40210.1 | 37.356 | 174 | 97 | 3 | 1 | 171 | 1 | 165 | 1.75e-24 | 100 |
| Msa1401900 | AT5G06500.1 | 35.938 | 128 | 82 | 0 | 1 | 128 | 1 | 128 | 2.12e-21 | 89.4 |
| Msa1401900 | AT5G55690.1 | 30.818 | 159 | 88 | 3 | 1 | 152 | 1 | 144 | 1.67e-15 | 73.9 |
| Msa1401900 | AT5G55690.2 | 30.818 | 159 | 88 | 3 | 1 | 152 | 1 | 144 | 1.67e-15 | 73.9 |
| Msa1401900 | AT5G58890.1 | 28.455 | 246 | 121 | 13 | 1 | 194 | 1 | 243 | 9.13e-14 | 69.3 |
| Msa1401900 | AT2G15660.1 | 24.427 | 131 | 98 | 1 | 38 | 168 | 31 | 160 | 3.95e-13 | 67.0 |
| Msa1401900 | AT5G35120.1 | 34.545 | 110 | 63 | 3 | 84 | 188 | 1 | 106 | 7.64e-12 | 60.5 |
| Msa1401900 | AT1G77950.3 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 1.81e-11 | 62.4 |
| Msa1401900 | AT1G77950.2 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 1.81e-11 | 62.4 |
| Msa1401900 | AT1G77950.1 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 1.81e-11 | 62.4 |
| Msa1401900 | AT1G77950.4 | 37.895 | 95 | 58 | 1 | 1 | 95 | 1 | 94 | 1.81e-11 | 62.4 |
| Msa1401900 | AT1G59930.1 | 33.636 | 110 | 64 | 3 | 84 | 188 | 1 | 106 | 4.14e-11 | 59.3 |
Find 60 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTGCTCTTTCGCCTTT+TGG | 0.163712 | tig0022785:-64838 | None:intergenic |
| AACACTTCTCAATGGGAAAA+TGG | 0.166654 | tig0022785:-65229 | None:intergenic |
| AATTTGACCTTGAGATTTCT+TGG | 0.216746 | tig0022785:-65026 | None:intergenic |
| TATGGTTGATTTAAATGATA+TGG | 0.252561 | tig0022785:+64949 | Msa1401900:CDS |
| GGAGATGTTTGTCAACAAAA+TGG | 0.262030 | tig0022785:+65193 | Msa1401900:CDS |
| TTTGTCAACAAAATGGATTT+TGG | 0.274730 | tig0022785:+65200 | Msa1401900:CDS |
| TTGATGGGTGGTGGTGGTGG+TGG | 0.292498 | tig0022785:+65151 | Msa1401900:CDS |
| CCACCAATGGTGACTAATAT+TGG | 0.300159 | tig0022785:+65061 | Msa1401900:CDS |
| TTGAGAATCTTCTTCAATCT+TGG | 0.324822 | tig0022785:-65089 | None:intergenic |
| GAAGAAAGGTCTAATGAAAA+AGG | 0.328619 | tig0022785:+64628 | Msa1401900:CDS |
| TCTTAGTGCAGGTAAACTTA+TGG | 0.346187 | tig0022785:+64916 | Msa1401900:CDS |
| AGAGGTTTGGCCATCTCAAT+TGG | 0.352415 | tig0022785:+64721 | Msa1401900:CDS |
| ATGAATTTGATGGGTGGTGG+TGG | 0.376740 | tig0022785:+65145 | Msa1401900:CDS |
| AATTTGATGGGTGGTGGTGG+TGG | 0.379151 | tig0022785:+65148 | Msa1401900:CDS |
| TGGGAATGACAAAACTCCTT+TGG | 0.398503 | tig0022785:+65171 | Msa1401900:CDS |
| ACTTGAAAGAGATTAATAGA+AGG | 0.404437 | tig0022785:+64990 | Msa1401900:CDS |
| TCATAACCAACGACTCTTCA+AGG | 0.405543 | tig0022785:+64585 | Msa1401900:CDS |
| ACTTATGGACAATATAAGTA+TGG | 0.408397 | tig0022785:+64931 | Msa1401900:CDS |
| TGAACTTGTTAAGCACCCTT+TGG | 0.411364 | tig0022785:-64748 | None:intergenic |
| ACACTTCTCAATGGGAAAAT+GGG | 0.417391 | tig0022785:-65228 | None:intergenic |
| ATGATCCTCAACCAGAGGTT+TGG | 0.418715 | tig0022785:+64708 | Msa1401900:CDS |
| TCTCAATGGGAAAATGGGTT+TGG | 0.422322 | tig0022785:-65223 | None:intergenic |
| ACCTCTGGTTGAGGATCATA+AGG | 0.423494 | tig0022785:-64704 | None:intergenic |
| GGGAATGACAAAACTCCTTT+GGG | 0.430551 | tig0022785:+65172 | Msa1401900:CDS |
| AAGGAAAGATAATAGAGAAA+AGG | 0.454421 | tig0022785:+64868 | Msa1401900:CDS |
| CAAGCACAACACTTCTCAAT+GGG | 0.463195 | tig0022785:-65236 | None:intergenic |
| TTTATGAATTTGATGGGTGG+TGG | 0.465768 | tig0022785:+65142 | Msa1401900:CDS |
| ACATTTGTTTATGAATTTGA+TGG | 0.467105 | tig0022785:+65135 | Msa1401900:CDS |
| CTTGAAAGAGATTAATAGAA+GGG | 0.469560 | tig0022785:+64991 | Msa1401900:CDS |
| GGAAGGCAGCATTCAAGAAA+AGG | 0.470664 | tig0022785:+64606 | Msa1401900:CDS |
| TTTCACCTTCTTTCTAGTCA+TGG | 0.477262 | tig0022785:-64555 | None:intergenic |
| AATTGAGATGGCCAAACCTC+TGG | 0.478913 | tig0022785:-64719 | None:intergenic |
| ATCTCAAGGTCAAATTCAAA+TGG | 0.486453 | tig0022785:+65033 | Msa1401900:CDS |
| TCTAAGACAAAGAATCCAAA+AGG | 0.491661 | tig0022785:+64823 | Msa1401900:CDS |
| GAGGTTTGGCCATCTCAATT+GGG | 0.496817 | tig0022785:+64722 | Msa1401900:CDS |
| AGTGAACTTAGCACCCTTTG+TGG | 0.500307 | tig0022785:+64653 | Msa1401900:CDS |
| ATCTCAATTGGGAGTCCAAA+GGG | 0.510300 | tig0022785:+64733 | Msa1401900:CDS |
| ATGTTTCAATGTCTTAGTGC+AGG | 0.513453 | tig0022785:+64905 | Msa1401900:CDS |
| TGCCTTCCTTGAAGAGTCGT+TGG | 0.516280 | tig0022785:-64591 | None:intergenic |
| ACAAGCATCAATTCCACAAA+GGG | 0.520783 | tig0022785:-64666 | None:intergenic |
| CATTTGTTTATGAATTTGAT+GGG | 0.537456 | tig0022785:+65136 | Msa1401900:CDS |
| CATCTCAATTGGGAGTCCAA+AGG | 0.551709 | tig0022785:+64732 | Msa1401900:CDS |
| CTTTGGACTCCCAATTGAGA+TGG | 0.556461 | tig0022785:-64731 | None:intergenic |
| TCAAATGGCACCACCACCAA+TGG | 0.556616 | tig0022785:+65048 | Msa1401900:CDS |
| GCATTCAAGAAAAGGAAGAA+AGG | 0.559136 | tig0022785:+64614 | Msa1401900:CDS |
| ATATTAGTCACCATTGGTGG+TGG | 0.561778 | tig0022785:-65058 | None:intergenic |
| CCAATATTAGTCACCATTGG+TGG | 0.566294 | tig0022785:-65061 | None:intergenic |
| AAGATTGAAGAAGATTCTCA+AGG | 0.572220 | tig0022785:+65091 | Msa1401900:CDS |
| CCACACCATGACTAGAAAGA+AGG | 0.577852 | tig0022785:+64550 | None:intergenic |
| ACTCCAATATTAGTCACCAT+TGG | 0.580691 | tig0022785:-65064 | None:intergenic |
| GATGGCCAAACCTCTGGTTG+AGG | 0.583372 | tig0022785:-64713 | None:intergenic |
| TCCTTATGATCCTCAACCAG+AGG | 0.603338 | tig0022785:+64703 | Msa1401900:CDS |
| AACCAACGACTCTTCAAGGA+AGG | 0.615674 | tig0022785:+64589 | Msa1401900:CDS |
| TGTTGACAAACATCTCCCAA+AGG | 0.617936 | tig0022785:-65187 | None:intergenic |
| ATGTTGACCAAGAAATCTCA+AGG | 0.620305 | tig0022785:+65019 | Msa1401900:CDS |
| AGATTGAAGAAGATTCTCAA+GGG | 0.621484 | tig0022785:+65092 | Msa1401900:CDS |
| TTGATTTAAATGATATGGCA+TGG | 0.624099 | tig0022785:+64954 | Msa1401900:CDS |
| CACAAGCATCAATTCCACAA+AGG | 0.628500 | tig0022785:-64667 | None:intergenic |
| AAGAGCAATTGACAAAACAA+AGG | 0.629535 | tig0022785:+64849 | Msa1401900:CDS |
| TTGTTTATGAATTTGATGGG+TGG | 0.633840 | tig0022785:+65139 | Msa1401900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGGTTGATTTAAATGATA+TGG | + | tig0022785:64949-64968 | Msa1401900:CDS | 20.0% |
| !! | ACATTTGTTTATGAATTTGA+TGG | + | tig0022785:65135-65154 | Msa1401900:CDS | 20.0% |
| !! | CATTTGTTTATGAATTTGAT+GGG | + | tig0022785:65136-65155 | Msa1401900:CDS | 20.0% |
| ! | AAGGAAAGATAATAGAGAAA+AGG | + | tig0022785:64868-64887 | Msa1401900:CDS | 25.0% |
| ! | ACTTATGGACAATATAAGTA+TGG | + | tig0022785:64931-64950 | Msa1401900:CDS | 25.0% |
| ! | TTGATTTAAATGATATGGCA+TGG | + | tig0022785:64954-64973 | Msa1401900:CDS | 25.0% |
| ! | ACTTGAAAGAGATTAATAGA+AGG | + | tig0022785:64990-65009 | Msa1401900:CDS | 25.0% |
| ! | CTTGAAAGAGATTAATAGAA+GGG | + | tig0022785:64991-65010 | Msa1401900:CDS | 25.0% |
| !!! | TTTGTCAACAAAATGGATTT+TGG | + | tig0022785:65200-65219 | Msa1401900:CDS | 25.0% |
| GAAGAAAGGTCTAATGAAAA+AGG | + | tig0022785:64628-64647 | Msa1401900:CDS | 30.0% | |
| !! | TTTTTGCTTTGTTCCAATTC+AGG | - | tig0022785:64782-64801 | None:intergenic | 30.0% |
| ATTGGAACAAAGCAAAAAGA+TGG | + | tig0022785:64784-64803 | Msa1401900:CDS | 30.0% | |
| ! | TCTAAGACAAAGAATCCAAA+AGG | + | tig0022785:64823-64842 | Msa1401900:CDS | 30.0% |
| AAGAGCAATTGACAAAACAA+AGG | + | tig0022785:64849-64868 | Msa1401900:CDS | 30.0% | |
| AATTTGACCTTGAGATTTCT+TGG | - | tig0022785:65029-65048 | None:intergenic | 30.0% | |
| ATCTCAAGGTCAAATTCAAA+TGG | + | tig0022785:65033-65052 | Msa1401900:CDS | 30.0% | |
| TTGAGAATCTTCTTCAATCT+TGG | - | tig0022785:65092-65111 | None:intergenic | 30.0% | |
| AAGATTGAAGAAGATTCTCA+AGG | + | tig0022785:65091-65110 | Msa1401900:CDS | 30.0% | |
| AGATTGAAGAAGATTCTCAA+GGG | + | tig0022785:65092-65111 | Msa1401900:CDS | 30.0% | |
| TTGTTTATGAATTTGATGGG+TGG | + | tig0022785:65139-65158 | Msa1401900:CDS | 30.0% | |
| GCATTCAAGAAAAGGAAGAA+AGG | + | tig0022785:64614-64633 | Msa1401900:CDS | 35.0% | |
| ACAAGCATCAATTCCACAAA+GGG | - | tig0022785:64669-64688 | None:intergenic | 35.0% | |
| GTTCAGAAAAATGCCTGAAT+TGG | + | tig0022785:64766-64785 | Msa1401900:CDS | 35.0% | |
| ATGTTTCAATGTCTTAGTGC+AGG | + | tig0022785:64905-64924 | Msa1401900:CDS | 35.0% | |
| TCTTAGTGCAGGTAAACTTA+TGG | + | tig0022785:64916-64935 | Msa1401900:CDS | 35.0% | |
| ATGTTGACCAAGAAATCTCA+AGG | + | tig0022785:65019-65038 | Msa1401900:CDS | 35.0% | |
| ACTCCAATATTAGTCACCAT+TGG | - | tig0022785:65067-65086 | None:intergenic | 35.0% | |
| ! | TTTATGAATTTGATGGGTGG+TGG | + | tig0022785:65142-65161 | Msa1401900:CDS | 35.0% |
| GGAGATGTTTGTCAACAAAA+TGG | + | tig0022785:65193-65212 | Msa1401900:CDS | 35.0% | |
| TCATAACCAACGACTCTTCA+AGG | + | tig0022785:64585-64604 | Msa1401900:CDS | 40.0% | |
| CACAAGCATCAATTCCACAA+AGG | - | tig0022785:64670-64689 | None:intergenic | 40.0% | |
| ATCTCAATTGGGAGTCCAAA+GGG | + | tig0022785:64733-64752 | Msa1401900:CDS | 40.0% | |
| !! | TGAACTTGTTAAGCACCCTT+TGG | - | tig0022785:64751-64770 | None:intergenic | 40.0% |
| ! | TCAATTGCTCTTTCGCCTTT+TGG | - | tig0022785:64841-64860 | None:intergenic | 40.0% |
| ATATTAGTCACCATTGGTGG+TGG | - | tig0022785:65061-65080 | None:intergenic | 40.0% | |
| CCAATATTAGTCACCATTGG+TGG | - | tig0022785:65064-65083 | None:intergenic | 40.0% | |
| CCACCAATGGTGACTAATAT+TGG | + | tig0022785:65061-65080 | Msa1401900:CDS | 40.0% | |
| TGGGAATGACAAAACTCCTT+TGG | + | tig0022785:65171-65190 | Msa1401900:CDS | 40.0% | |
| GGGAATGACAAAACTCCTTT+GGG | + | tig0022785:65172-65191 | Msa1401900:CDS | 40.0% | |
| TGTTGACAAACATCTCCCAA+AGG | - | tig0022785:65190-65209 | None:intergenic | 40.0% | |
| AACCAACGACTCTTCAAGGA+AGG | + | tig0022785:64589-64608 | Msa1401900:CDS | 45.0% | |
| GGAAGGCAGCATTCAAGAAA+AGG | + | tig0022785:64606-64625 | Msa1401900:CDS | 45.0% | |
| AGTGAACTTAGCACCCTTTG+TGG | + | tig0022785:64653-64672 | Msa1401900:CDS | 45.0% | |
| TCCTTATGATCCTCAACCAG+AGG | + | tig0022785:64703-64722 | Msa1401900:CDS | 45.0% | |
| ACCTCTGGTTGAGGATCATA+AGG | - | tig0022785:64707-64726 | None:intergenic | 45.0% | |
| ATGATCCTCAACCAGAGGTT+TGG | + | tig0022785:64708-64727 | Msa1401900:CDS | 45.0% | |
| AATTGAGATGGCCAAACCTC+TGG | - | tig0022785:64722-64741 | None:intergenic | 45.0% | |
| AGAGGTTTGGCCATCTCAAT+TGG | + | tig0022785:64721-64740 | Msa1401900:CDS | 45.0% | |
| GAGGTTTGGCCATCTCAATT+GGG | + | tig0022785:64722-64741 | Msa1401900:CDS | 45.0% | |
| CTTTGGACTCCCAATTGAGA+TGG | - | tig0022785:64734-64753 | None:intergenic | 45.0% | |
| CATCTCAATTGGGAGTCCAA+AGG | + | tig0022785:64732-64751 | Msa1401900:CDS | 45.0% | |
| ! | ATGAATTTGATGGGTGGTGG+TGG | + | tig0022785:65145-65164 | Msa1401900:CDS | 45.0% |
| TGCCTTCCTTGAAGAGTCGT+TGG | - | tig0022785:64594-64613 | None:intergenic | 50.0% | |
| TCAAATGGCACCACCACCAA+TGG | + | tig0022785:65048-65067 | Msa1401900:CDS | 50.0% | |
| !! | AATTTGATGGGTGGTGGTGG+TGG | + | tig0022785:65148-65167 | Msa1401900:CDS | 50.0% |
| GATGGCCAAACCTCTGGTTG+AGG | - | tig0022785:64716-64735 | None:intergenic | 55.0% | |
| !! | TTGATGGGTGGTGGTGGTGG+TGG | + | tig0022785:65151-65170 | Msa1401900:CDS | 60.0% |
| !! | TGATGGGTGGTGGTGGTGGT+GGG | + | tig0022785:65152-65171 | Msa1401900:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022785 | gene | 64557 | 65243 | 64557 | ID=Msa1401900;Name=Msa1401900 |
| tig0022785 | mRNA | 64557 | 65243 | 64557 | ID=Msa1401900-mRNA-1;Parent=Msa1401900;Name=Msa1401900-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|228 |
| tig0022785 | exon | 64557 | 65243 | 64557 | ID=Msa1401900-mRNA-1:exon:18631;Parent=Msa1401900-mRNA-1 |
| tig0022785 | CDS | 64557 | 65243 | 64557 | ID=Msa1401900-mRNA-1:cds;Parent=Msa1401900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
