Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402840 | XP_013445108.1 | 96.552 | 232 | 4 | 2 | 1 | 232 | 1 | 228 | 8.30e-162 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402840 | sp|O04479|AS2_ARATH | 59.657 | 233 | 55 | 5 | 2 | 232 | 4 | 199 | 2.97e-75 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402840 | V5RG59 | 96.552 | 232 | 4 | 2 | 1 | 232 | 1 | 228 | 3.96e-162 | 456 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1402840 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402840 | MtrunA17_Chr8g0353981 | 96.552 | 232 | 4 | 2 | 1 | 232 | 1 | 228 | 7.63e-166 | 456 |
| Msa1402840 | MtrunA17_Chr4g0058651 | 66.929 | 127 | 42 | 0 | 5 | 131 | 9 | 135 | 4.05e-59 | 184 |
| Msa1402840 | MtrunA17_Chr3g0117121 | 75.221 | 113 | 25 | 1 | 1 | 110 | 1 | 113 | 4.14e-58 | 182 |
| Msa1402840 | MtrunA17_Chr7g0227511 | 55.357 | 168 | 64 | 3 | 2 | 160 | 6 | 171 | 2.19e-57 | 179 |
| Msa1402840 | MtrunA17_Chr5g0402611 | 73.394 | 109 | 29 | 0 | 2 | 110 | 3 | 111 | 8.20e-54 | 175 |
| Msa1402840 | MtrunA17_Chr6g0449641 | 69.643 | 112 | 32 | 1 | 1 | 110 | 1 | 112 | 1.20e-53 | 169 |
| Msa1402840 | MtrunA17_Chr6g0449651 | 68.750 | 112 | 33 | 1 | 1 | 110 | 59 | 170 | 1.41e-52 | 168 |
| Msa1402840 | MtrunA17_Chr3g0097221 | 69.091 | 110 | 34 | 0 | 1 | 110 | 1 | 110 | 8.45e-51 | 167 |
| Msa1402840 | MtrunA17_Chr3g0115431 | 67.568 | 111 | 35 | 1 | 1 | 110 | 2 | 112 | 5.20e-48 | 157 |
| Msa1402840 | MtrunA17_Chr5g0437571 | 63.551 | 107 | 39 | 0 | 5 | 111 | 4 | 110 | 1.35e-46 | 152 |
| Msa1402840 | MtrunA17_Chr3g0106101 | 62.617 | 107 | 40 | 0 | 1 | 107 | 1 | 107 | 6.86e-46 | 150 |
| Msa1402840 | MtrunA17_Chr4g0043421 | 50.350 | 143 | 69 | 1 | 6 | 146 | 14 | 156 | 3.15e-45 | 149 |
| Msa1402840 | MtrunA17_Chr2g0311601 | 61.765 | 102 | 39 | 0 | 6 | 107 | 12 | 113 | 1.98e-43 | 144 |
| Msa1402840 | MtrunA17_Chr5g0437401 | 61.321 | 106 | 41 | 0 | 4 | 109 | 8 | 113 | 4.09e-43 | 143 |
| Msa1402840 | MtrunA17_Chr3g0114061 | 59.615 | 104 | 42 | 0 | 4 | 107 | 5 | 108 | 7.08e-42 | 140 |
| Msa1402840 | MtrunA17_Chr5g0438091 | 45.139 | 144 | 79 | 0 | 4 | 147 | 36 | 179 | 1.10e-41 | 140 |
| Msa1402840 | MtrunA17_Chr3g0113891 | 61.386 | 101 | 39 | 0 | 4 | 104 | 11 | 111 | 4.95e-41 | 138 |
| Msa1402840 | MtrunA17_Chr3g0129071 | 56.604 | 106 | 46 | 0 | 6 | 111 | 46 | 151 | 1.06e-40 | 139 |
| Msa1402840 | MtrunA17_Chr5g0432451 | 58.491 | 106 | 44 | 0 | 6 | 111 | 42 | 147 | 1.82e-37 | 130 |
| Msa1402840 | MtrunA17_Chr7g0260971 | 56.897 | 116 | 42 | 2 | 1 | 108 | 1 | 116 | 4.80e-37 | 129 |
| Msa1402840 | MtrunA17_Chr4g0030001 | 55.340 | 103 | 45 | 1 | 6 | 107 | 23 | 125 | 3.22e-36 | 126 |
| Msa1402840 | MtrunA17_Chr1g0200201 | 57.000 | 100 | 43 | 0 | 8 | 107 | 73 | 172 | 2.42e-35 | 125 |
| Msa1402840 | MtrunA17_Chr8g0374601 | 49.091 | 110 | 56 | 0 | 7 | 116 | 26 | 135 | 2.79e-34 | 124 |
| Msa1402840 | MtrunA17_Chr7g0225111 | 50.485 | 103 | 51 | 0 | 6 | 108 | 4 | 106 | 6.75e-34 | 118 |
| Msa1402840 | MtrunA17_Chr1g0184281 | 52.679 | 112 | 52 | 1 | 3 | 113 | 11 | 122 | 3.74e-33 | 119 |
| Msa1402840 | MtrunA17_Chr8g0351721 | 53.043 | 115 | 53 | 1 | 7 | 120 | 18 | 132 | 8.31e-33 | 118 |
| Msa1402840 | MtrunA17_Chr8g0351701 | 52.830 | 106 | 49 | 1 | 7 | 111 | 23 | 128 | 9.91e-33 | 118 |
| Msa1402840 | MtrunA17_Chr8g0374591 | 50.000 | 104 | 52 | 0 | 7 | 110 | 8 | 111 | 1.04e-30 | 110 |
| Msa1402840 | MtrunA17_Chr4g0059901 | 48.000 | 100 | 52 | 0 | 8 | 107 | 11 | 110 | 3.19e-30 | 113 |
| Msa1402840 | MtrunA17_Chr7g0245871 | 57.895 | 95 | 39 | 1 | 7 | 100 | 27 | 121 | 6.68e-30 | 111 |
| Msa1402840 | MtrunA17_Chr6g0460951 | 49.515 | 103 | 51 | 1 | 6 | 107 | 39 | 141 | 1.46e-29 | 110 |
| Msa1402840 | MtrunA17_Chr5g0444351 | 50.538 | 93 | 46 | 0 | 8 | 100 | 6 | 98 | 3.18e-29 | 107 |
| Msa1402840 | MtrunA17_Chr5g0435641 | 49.505 | 101 | 50 | 1 | 1 | 100 | 1 | 101 | 3.76e-29 | 108 |
| Msa1402840 | MtrunA17_Chr7g0261031 | 53.465 | 101 | 46 | 1 | 1 | 100 | 2 | 102 | 4.96e-28 | 106 |
| Msa1402840 | MtrunA17_Chr6g0452691 | 43.860 | 114 | 56 | 2 | 1 | 113 | 3 | 109 | 8.62e-28 | 104 |
| Msa1402840 | MtrunA17_Chr6g0452661 | 40.000 | 130 | 69 | 3 | 1 | 121 | 3 | 132 | 1.37e-27 | 105 |
| Msa1402840 | MtrunA17_Chr6g0452671 | 42.574 | 101 | 58 | 0 | 4 | 104 | 8 | 108 | 2.81e-27 | 103 |
| Msa1402840 | MtrunA17_Chr1g0184271 | 48.246 | 114 | 56 | 2 | 7 | 119 | 12 | 123 | 3.64e-27 | 104 |
| Msa1402840 | MtrunA17_Chr4g0055441 | 35.948 | 153 | 78 | 4 | 8 | 159 | 3 | 136 | 1.03e-26 | 100 |
| Msa1402840 | MtrunA17_Chr8g0374581 | 45.455 | 110 | 59 | 1 | 7 | 115 | 8 | 117 | 7.87e-26 | 100 |
| Msa1402840 | MtrunA17_Chr8g0342351 | 40.385 | 104 | 62 | 0 | 8 | 111 | 13 | 116 | 1.70e-25 | 100 |
| Msa1402840 | MtrunA17_Chr2g0330201 | 33.728 | 169 | 99 | 3 | 8 | 176 | 20 | 175 | 1.94e-24 | 98.6 |
| Msa1402840 | MtrunA17_Chr6g0460941 | 44.211 | 95 | 52 | 1 | 1 | 94 | 1 | 95 | 6.70e-24 | 91.7 |
| Msa1402840 | MtrunA17_Chr7g0245861 | 54.444 | 90 | 38 | 2 | 7 | 93 | 12 | 101 | 7.43e-24 | 92.8 |
| Msa1402840 | MtrunA17_Chr5g0439111 | 41.228 | 114 | 66 | 1 | 1 | 113 | 3 | 116 | 1.94e-22 | 91.7 |
| Msa1402840 | MtrunA17_Chr4g0040831 | 38.710 | 93 | 57 | 0 | 8 | 100 | 16 | 108 | 8.21e-20 | 84.0 |
| Msa1402840 | MtrunA17_Chr2g0326041 | 63.830 | 47 | 17 | 0 | 6 | 52 | 32 | 78 | 2.90e-18 | 76.6 |
| Msa1402840 | MtrunA17_Chr4g0046201 | 33.721 | 86 | 57 | 0 | 8 | 93 | 7 | 92 | 1.36e-15 | 73.9 |
| Msa1402840 | MtrunA17_Chr2g0326051 | 50.000 | 60 | 30 | 0 | 52 | 111 | 5 | 64 | 2.29e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402840 | AT1G65620.1 | 59.657 | 233 | 55 | 5 | 2 | 232 | 4 | 199 | 3.02e-76 | 229 |
| Msa1402840 | AT1G65620.4 | 59.657 | 233 | 55 | 5 | 2 | 232 | 4 | 199 | 3.02e-76 | 229 |
| Msa1402840 | AT1G65620.3 | 59.657 | 233 | 55 | 5 | 2 | 232 | 4 | 199 | 3.02e-76 | 229 |
| Msa1402840 | AT1G65620.5 | 59.657 | 233 | 55 | 5 | 2 | 232 | 4 | 199 | 3.02e-76 | 229 |
| Msa1402840 | AT1G65620.2 | 59.657 | 233 | 55 | 5 | 2 | 232 | 4 | 199 | 3.02e-76 | 229 |
| Msa1402840 | AT5G63090.4 | 69.291 | 127 | 34 | 2 | 1 | 123 | 1 | 126 | 1.08e-56 | 179 |
| Msa1402840 | AT5G63090.3 | 69.291 | 127 | 34 | 2 | 1 | 123 | 1 | 126 | 1.08e-56 | 179 |
| Msa1402840 | AT5G63090.2 | 69.291 | 127 | 34 | 2 | 1 | 123 | 1 | 126 | 1.08e-56 | 179 |
| Msa1402840 | AT5G63090.1 | 69.291 | 127 | 34 | 2 | 1 | 123 | 1 | 126 | 1.08e-56 | 179 |
| Msa1402840 | AT5G66870.1 | 75.455 | 110 | 27 | 0 | 1 | 110 | 1 | 110 | 1.29e-55 | 180 |
| Msa1402840 | AT3G27650.1 | 63.636 | 121 | 43 | 1 | 4 | 124 | 36 | 155 | 1.10e-53 | 170 |
| Msa1402840 | AT2G23660.2 | 70.192 | 104 | 31 | 0 | 4 | 107 | 2 | 105 | 1.40e-50 | 167 |
| Msa1402840 | AT2G23660.3 | 70.192 | 104 | 31 | 0 | 4 | 107 | 2 | 105 | 1.40e-50 | 167 |
| Msa1402840 | AT2G23660.1 | 70.192 | 104 | 31 | 0 | 4 | 107 | 2 | 105 | 1.40e-50 | 167 |
| Msa1402840 | AT2G30130.1 | 63.551 | 107 | 39 | 0 | 5 | 111 | 6 | 112 | 8.69e-46 | 151 |
| Msa1402840 | AT1G31320.1 | 69.318 | 88 | 27 | 0 | 6 | 93 | 12 | 99 | 1.17e-41 | 140 |
| Msa1402840 | AT2G30340.2 | 57.692 | 104 | 44 | 0 | 6 | 109 | 52 | 155 | 7.65e-41 | 140 |
| Msa1402840 | AT2G30340.1 | 57.692 | 104 | 44 | 0 | 6 | 109 | 51 | 154 | 8.22e-41 | 140 |
| Msa1402840 | AT1G07900.1 | 57.547 | 106 | 45 | 0 | 6 | 111 | 32 | 137 | 1.64e-39 | 135 |
| Msa1402840 | AT3G11090.1 | 56.731 | 104 | 45 | 0 | 4 | 107 | 8 | 111 | 1.63e-38 | 132 |
| Msa1402840 | AT1G16530.1 | 57.798 | 109 | 45 | 1 | 6 | 113 | 13 | 121 | 2.44e-38 | 131 |
| Msa1402840 | AT2G28500.1 | 56.604 | 106 | 46 | 0 | 6 | 111 | 54 | 159 | 7.96e-38 | 132 |
| Msa1402840 | AT2G40470.2 | 57.547 | 106 | 45 | 0 | 6 | 111 | 19 | 124 | 2.66e-37 | 129 |
| Msa1402840 | AT2G40470.1 | 51.200 | 125 | 60 | 1 | 6 | 129 | 44 | 168 | 3.63e-37 | 130 |
| Msa1402840 | AT3G26660.1 | 52.679 | 112 | 46 | 1 | 8 | 112 | 6 | 117 | 5.21e-37 | 126 |
| Msa1402840 | AT3G26620.1 | 53.333 | 105 | 49 | 0 | 8 | 112 | 6 | 110 | 6.27e-37 | 126 |
| Msa1402840 | AT3G03760.1 | 55.340 | 103 | 45 | 1 | 6 | 107 | 50 | 152 | 4.23e-33 | 120 |
| Msa1402840 | AT4G00210.1 | 54.630 | 108 | 48 | 1 | 7 | 113 | 11 | 118 | 1.15e-32 | 118 |
| Msa1402840 | AT3G50510.1 | 48.182 | 110 | 57 | 0 | 1 | 110 | 6 | 115 | 1.25e-32 | 117 |
| Msa1402840 | AT3G50510.2 | 48.182 | 110 | 57 | 0 | 1 | 110 | 6 | 115 | 1.25e-32 | 117 |
| Msa1402840 | AT2G42430.1 | 50.893 | 112 | 54 | 1 | 2 | 112 | 10 | 121 | 2.45e-32 | 118 |
| Msa1402840 | AT5G06080.1 | 50.450 | 111 | 54 | 1 | 1 | 110 | 1 | 111 | 5.41e-30 | 110 |
| Msa1402840 | AT2G45420.1 | 51.456 | 103 | 49 | 1 | 10 | 111 | 40 | 142 | 2.10e-29 | 111 |
| Msa1402840 | AT2G31310.1 | 49.091 | 110 | 55 | 1 | 1 | 109 | 1 | 110 | 2.17e-29 | 108 |
| Msa1402840 | AT4G00220.1 | 52.427 | 103 | 48 | 1 | 10 | 111 | 20 | 122 | 3.06e-29 | 109 |
| Msa1402840 | AT5G35900.1 | 48.113 | 106 | 55 | 0 | 8 | 113 | 6 | 111 | 4.25e-29 | 108 |
| Msa1402840 | AT2G45410.1 | 52.336 | 107 | 50 | 1 | 10 | 115 | 19 | 125 | 5.01e-29 | 108 |
| Msa1402840 | AT3G58190.1 | 49.038 | 104 | 52 | 1 | 7 | 109 | 11 | 114 | 5.24e-28 | 106 |
| Msa1402840 | AT2G42440.1 | 47.273 | 110 | 57 | 1 | 1 | 109 | 1 | 110 | 8.61e-28 | 106 |
| Msa1402840 | AT3G13850.1 | 40.952 | 105 | 62 | 0 | 8 | 112 | 37 | 141 | 7.42e-27 | 104 |
| Msa1402840 | AT3G47870.1 | 40.000 | 105 | 63 | 0 | 8 | 112 | 37 | 141 | 1.69e-25 | 102 |
| Msa1402840 | AT1G72980.1 | 37.838 | 111 | 69 | 0 | 4 | 114 | 10 | 120 | 1.38e-20 | 86.7 |
| Msa1402840 | AT4G22700.1 | 33.566 | 143 | 89 | 3 | 8 | 145 | 6 | 147 | 1.56e-19 | 83.6 |
| Msa1402840 | AT1G06280.1 | 39.080 | 87 | 53 | 0 | 8 | 94 | 25 | 111 | 1.89e-18 | 80.9 |
| Msa1402840 | AT2G19820.1 | 32.584 | 89 | 59 | 1 | 6 | 93 | 11 | 99 | 4.06e-14 | 67.4 |
| Msa1402840 | AT5G15060.1 | 39.726 | 73 | 42 | 1 | 8 | 78 | 18 | 90 | 1.23e-13 | 66.2 |
| Msa1402840 | AT3G27940.3 | 42.424 | 66 | 38 | 0 | 7 | 72 | 5 | 70 | 5.03e-11 | 59.7 |
| Msa1402840 | AT3G27940.1 | 42.424 | 66 | 38 | 0 | 7 | 72 | 5 | 70 | 5.03e-11 | 59.7 |
| Msa1402840 | AT3G27940.2 | 42.424 | 66 | 38 | 0 | 7 | 72 | 5 | 70 | 5.03e-11 | 59.7 |
Find 45 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACTTCGTGATCCTGTTTA+TGG | 0.153983 | tig0022935:+95936 | Msa1402840:CDS |
| TCAACATCAACAACATAATT+TGG | 0.244739 | tig0022935:+96241 | Msa1402840:CDS |
| CACATTCTGGTTGGCATTTG+CGG | 0.315598 | tig0022935:-95761 | None:intergenic |
| GTGCTAAATCTGAACTTTCT+CGG | 0.364176 | tig0022935:+96021 | Msa1402840:CDS |
| TAAGGTGCAAATGCACATTC+TGG | 0.376608 | tig0022935:-95774 | None:intergenic |
| GGCTGATCAGGTGGAAAATA+AGG | 0.377629 | tig0022935:-95792 | None:intergenic |
| ATGAATATTTCTGCTAGCTT+AGG | 0.398380 | tig0022935:+96317 | Msa1402840:CDS |
| ATCGCTGCAGCCGCTACTGC+CGG | 0.424822 | tig0022935:+96059 | Msa1402840:CDS |
| GCCGGTCATGGACTCATAAC+CGG | 0.444703 | tig0022935:+96077 | Msa1402840:CDS |
| CATAGTGCTGCTGGTGGTGG+TGG | 0.453028 | tig0022935:+96362 | Msa1402840:CDS |
| ACACCAACACAACCATAAAC+AGG | 0.455574 | tig0022935:-95948 | None:intergenic |
| CCAACTTCGTCAGCTTCAAA+TGG | 0.466283 | tig0022935:+95989 | Msa1402840:CDS |
| CTTCAACATCATAGTGCTGC+TGG | 0.473475 | tig0022935:+96353 | Msa1402840:CDS |
| CAACTATGATGCTAGTCTCT+TGG | 0.489577 | tig0022935:+96292 | Msa1402840:CDS |
| GGACTCATAACCGGCATGAC+AGG | 0.499561 | tig0022935:+96086 | Msa1402840:CDS |
| CATCATAGTGCTGCTGGTGG+TGG | 0.501541 | tig0022935:+96359 | Msa1402840:CDS |
| GCTGACGAAGTTGGTGTTGA+AGG | 0.501764 | tig0022935:-95980 | None:intergenic |
| GCAGCCGCTACTGCCGGTCA+TGG | 0.511968 | tig0022935:+96065 | Msa1402840:CDS |
| GCCGGTTATGAGTCCATGAC+CGG | 0.516685 | tig0022935:-96078 | None:intergenic |
| CCATTTGAAGCTGACGAAGT+TGG | 0.517758 | tig0022935:-95989 | None:intergenic |
| TGTTGTTGATGTTGATCCCT+CGG | 0.529970 | tig0022935:-96233 | None:intergenic |
| TGCTGCACATGGTGAATTTG+AGG | 0.533620 | tig0022935:-95724 | None:intergenic |
| GACAGATTCACCTGTCATGC+CGG | 0.536335 | tig0022935:-96096 | None:intergenic |
| GATCCTGTTTATGGTTGTGT+TGG | 0.542374 | tig0022935:+95945 | Msa1402840:CDS |
| CAGCATCTTCACGTTGGTGA+GGG | 0.561735 | tig0022935:-95884 | None:intergenic |
| GCTAGGAGCGGTTAACAGTA+CGG | 0.578504 | tig0022935:-96394 | None:intergenic |
| ACAGCATCTTCACGTTGGTG+AGG | 0.580209 | tig0022935:-95885 | None:intergenic |
| GAATCTGTCACGGCCGCTGT+AGG | 0.580287 | tig0022935:+96110 | Msa1402840:CDS |
| GAGTCCATGACCGGCAGTAG+CGG | 0.584507 | tig0022935:-96069 | None:intergenic |
| CAGAATACTGCTGTTGGTGG+TGG | 0.584551 | tig0022935:+96149 | Msa1402840:CDS |
| GTGCAAATGCACATTCTGGT+TGG | 0.592305 | tig0022935:-95770 | None:intergenic |
| CACACGCAGAATACTGCTGT+TGG | 0.626411 | tig0022935:+96143 | Msa1402840:CDS |
| CAGCAGTATTCTGCGTGTGG+TGG | 0.626937 | tig0022935:-96139 | None:intergenic |
| ACGCAGAATACTGCTGTTGG+TGG | 0.628233 | tig0022935:+96146 | Msa1402840:CDS |
| GGTGGTGGTAATAACAGTAA+CGG | 0.628758 | tig0022935:+96164 | Msa1402840:CDS |
| TGGTGAATTTGAGGATGCCA+TGG | 0.633685 | tig0022935:-95715 | None:intergenic |
| AGAAACTTGCATGCTGCACA+TGG | 0.636607 | tig0022935:-95735 | None:intergenic |
| CAACAGCAGTATTCTGCGTG+TGG | 0.645847 | tig0022935:-96142 | None:intergenic |
| CATGACAGGTGAATCTGTCA+CGG | 0.646689 | tig0022935:+96100 | Msa1402840:CDS |
| AATTAACAGCATCTTCACGT+TGG | 0.680722 | tig0022935:-95890 | None:intergenic |
| TTAGAAACCCTAGCTAGGAG+CGG | 0.696119 | tig0022935:-96406 | None:intergenic |
| GATGTTGATAACGATGGTCA+CGG | 0.703058 | tig0022935:-96187 | None:intergenic |
| CAACATCATAGTGCTGCTGG+TGG | 0.709794 | tig0022935:+96356 | Msa1402840:CDS |
| GATGATGATGTTGATAACGA+TGG | 0.724184 | tig0022935:-96193 | None:intergenic |
| GTGGTGGTAATTACCTACAG+CGG | 0.773218 | tig0022935:-96123 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAACATTTGCAAATTTTTG+TGG | - | tig0022935:95816-95835 | None:intergenic | 25.0% |
| !! | GCAAATGTTCATAGAATTTT+TGG | + | tig0022935:95825-95844 | Msa1402840:CDS | 25.0% |
| ! | TCAACATCAACAACATAATT+TGG | + | tig0022935:96241-96260 | Msa1402840:CDS | 25.0% |
| !! | AATTTGGCAAGAAATTTTGA+TGG | + | tig0022935:96257-96276 | Msa1402840:CDS | 25.0% |
| !!! | AGAAATTTTGATGGTGGAAT+TGG | + | tig0022935:96266-96285 | Msa1402840:CDS | 30.0% |
| !!! | GAAATTTTGATGGTGGAATT+GGG | + | tig0022935:96267-96286 | Msa1402840:CDS | 30.0% |
| ! | ATGAATATTTCTGCTAGCTT+AGG | + | tig0022935:96317-96336 | Msa1402840:CDS | 30.0% |
| AATTAACAGCATCTTCACGT+TGG | - | tig0022935:95893-95912 | None:intergenic | 35.0% | |
| GTGCTAAATCTGAACTTTCT+CGG | + | tig0022935:96021-96040 | Msa1402840:CDS | 35.0% | |
| !! | GATGATGATGTTGATAACGA+TGG | - | tig0022935:96196-96215 | None:intergenic | 35.0% |
| !! | TTGGCAAGAAATTTTGATGG+TGG | + | tig0022935:96260-96279 | Msa1402840:CDS | 35.0% |
| TAAGGTGCAAATGCACATTC+TGG | - | tig0022935:95777-95796 | None:intergenic | 40.0% | |
| ! | AATTTTTGTGGCTGATCAGG+TGG | - | tig0022935:95804-95823 | None:intergenic | 40.0% |
| ! | GCAAATTTTTGTGGCTGATC+AGG | - | tig0022935:95807-95826 | None:intergenic | 40.0% |
| GATCCTGTTTATGGTTGTGT+TGG | + | tig0022935:95945-95964 | Msa1402840:CDS | 40.0% | |
| ACACCAACACAACCATAAAC+AGG | - | tig0022935:95951-95970 | None:intergenic | 40.0% | |
| ! | GGTGGTGGTAATAACAGTAA+CGG | + | tig0022935:96164-96183 | Msa1402840:CDS | 40.0% |
| !! | GATGTTGATAACGATGGTCA+CGG | - | tig0022935:96190-96209 | None:intergenic | 40.0% |
| !!! | AACAGCATCAGTTTTTTCCG+AGG | + | tig0022935:96216-96235 | Msa1402840:CDS | 40.0% |
| !!! | ACAGCATCAGTTTTTTCCGA+GGG | + | tig0022935:96217-96236 | Msa1402840:CDS | 40.0% |
| TGTTGTTGATGTTGATCCCT+CGG | - | tig0022935:96236-96255 | None:intergenic | 40.0% | |
| ! | CAACTATGATGCTAGTCTCT+TGG | + | tig0022935:96292-96311 | Msa1402840:CDS | 40.0% |
| TGCTGCACATGGTGAATTTG+AGG | - | tig0022935:95727-95746 | None:intergenic | 45.0% | |
| AGAAACTTGCATGCTGCACA+TGG | - | tig0022935:95738-95757 | None:intergenic | 45.0% | |
| ! | CACATTCTGGTTGGCATTTG+CGG | - | tig0022935:95764-95783 | None:intergenic | 45.0% |
| GTGCAAATGCACATTCTGGT+TGG | - | tig0022935:95773-95792 | None:intergenic | 45.0% | |
| GGCTGATCAGGTGGAAAATA+AGG | - | tig0022935:95795-95814 | None:intergenic | 45.0% | |
| CGACTTCGTGATCCTGTTTA+TGG | + | tig0022935:95936-95955 | Msa1402840:CDS | 45.0% | |
| ! | CCATTTGAAGCTGACGAAGT+TGG | - | tig0022935:95992-96011 | None:intergenic | 45.0% |
| CCAACTTCGTCAGCTTCAAA+TGG | + | tig0022935:95989-96008 | Msa1402840:CDS | 45.0% | |
| CATGACAGGTGAATCTGTCA+CGG | + | tig0022935:96100-96119 | Msa1402840:CDS | 45.0% | |
| GTGGTGGTAATTACCTACAG+CGG | - | tig0022935:96126-96145 | None:intergenic | 45.0% | |
| CTTCAACATCATAGTGCTGC+TGG | + | tig0022935:96353-96372 | Msa1402840:CDS | 45.0% | |
| ! | CAGCATCTTCACGTTGGTGA+GGG | - | tig0022935:95887-95906 | None:intergenic | 50.0% |
| ACAGCATCTTCACGTTGGTG+AGG | - | tig0022935:95888-95907 | None:intergenic | 50.0% | |
| !! | GCTGACGAAGTTGGTGTTGA+AGG | - | tig0022935:95983-96002 | None:intergenic | 50.0% |
| GACAGATTCACCTGTCATGC+CGG | - | tig0022935:96099-96118 | None:intergenic | 50.0% | |
| CAACAGCAGTATTCTGCGTG+TGG | - | tig0022935:96145-96164 | None:intergenic | 50.0% | |
| CACACGCAGAATACTGCTGT+TGG | + | tig0022935:96143-96162 | Msa1402840:CDS | 50.0% | |
| ACGCAGAATACTGCTGTTGG+TGG | + | tig0022935:96146-96165 | Msa1402840:CDS | 50.0% | |
| ! | CAGAATACTGCTGTTGGTGG+TGG | + | tig0022935:96149-96168 | Msa1402840:CDS | 50.0% |
| ! | CAACATCATAGTGCTGCTGG+TGG | + | tig0022935:96356-96375 | Msa1402840:CDS | 50.0% |
| GCCGGTCATGGACTCATAAC+CGG | + | tig0022935:96077-96096 | Msa1402840:CDS | 55.0% | |
| GCCGGTTATGAGTCCATGAC+CGG | - | tig0022935:96081-96100 | None:intergenic | 55.0% | |
| GGACTCATAACCGGCATGAC+AGG | + | tig0022935:96086-96105 | Msa1402840:CDS | 55.0% | |
| CAGCAGTATTCTGCGTGTGG+TGG | - | tig0022935:96142-96161 | None:intergenic | 55.0% | |
| ! | CATCATAGTGCTGCTGGTGG+TGG | + | tig0022935:96359-96378 | Msa1402840:CDS | 55.0% |
| AGGAGCGGTTAACAGTACGG+CGG | - | tig0022935:96394-96413 | None:intergenic | 55.0% | |
| GAGTCCATGACCGGCAGTAG+CGG | - | tig0022935:96072-96091 | None:intergenic | 60.0% | |
| GAATCTGTCACGGCCGCTGT+AGG | + | tig0022935:96110-96129 | Msa1402840:CDS | 60.0% | |
| !! | CATAGTGCTGCTGGTGGTGG+TGG | + | tig0022935:96362-96381 | Msa1402840:CDS | 60.0% |
| ATCGCTGCAGCCGCTACTGC+CGG | + | tig0022935:96059-96078 | Msa1402840:CDS | 65.0% | |
| GCAGCCGCTACTGCCGGTCA+TGG | + | tig0022935:96065-96084 | Msa1402840:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022935 | gene | 95717 | 96415 | 95717 | ID=Msa1402840;Name=Msa1402840 |
| tig0022935 | mRNA | 95717 | 96415 | 95717 | ID=Msa1402840-mRNA-1;Parent=Msa1402840;Name=Msa1402840-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|232 |
| tig0022935 | exon | 95717 | 96415 | 95717 | ID=Msa1402840-mRNA-1:exon:19114;Parent=Msa1402840-mRNA-1 |
| tig0022935 | CDS | 95717 | 96415 | 95717 | ID=Msa1402840-mRNA-1:cds;Parent=Msa1402840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
