Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402940 | PNX99521.1 | 76.106 | 339 | 72 | 2 | 62 | 391 | 1 | 339 | 0.0 | 539 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402940 | sp|Q9SY66|FRS11_ARATH | 44.375 | 320 | 161 | 4 | 80 | 391 | 17 | 327 | 1.33e-85 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402940 | A0A2K3N8Z5 | 76.106 | 339 | 72 | 2 | 62 | 391 | 1 | 339 | 0.0 | 539 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1402940 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402940 | MtrunA17_Chr5g0431001 | 68.091 | 351 | 97 | 2 | 62 | 397 | 1 | 351 | 9.64e-169 | 482 |
| Msa1402940 | MtrunA17_Chr1g0198761 | 70.938 | 320 | 84 | 2 | 87 | 397 | 18 | 337 | 9.59e-158 | 463 |
| Msa1402940 | MtrunA17_Chr2g0276841 | 44.755 | 286 | 145 | 2 | 114 | 391 | 69 | 349 | 6.42e-85 | 273 |
| Msa1402940 | MtrunA17_Chr2g0294841 | 42.857 | 315 | 162 | 5 | 95 | 397 | 25 | 333 | 8.87e-76 | 250 |
| Msa1402940 | MtrunA17_Chr2g0290391 | 42.157 | 306 | 150 | 4 | 111 | 397 | 47 | 344 | 1.10e-74 | 246 |
| Msa1402940 | MtrunA17_Chr3g0081281 | 88.172 | 93 | 3 | 1 | 263 | 347 | 1 | 93 | 9.69e-50 | 163 |
| Msa1402940 | MtrunA17_Chr2g0287651 | 31.071 | 280 | 171 | 8 | 121 | 389 | 81 | 349 | 1.91e-33 | 132 |
| Msa1402940 | MtrunA17_Chr1g0203051 | 26.460 | 291 | 195 | 5 | 108 | 391 | 75 | 353 | 1.72e-31 | 126 |
| Msa1402940 | MtrunA17_Chr6g0458391 | 28.873 | 284 | 181 | 7 | 108 | 391 | 219 | 481 | 4.39e-31 | 125 |
| Msa1402940 | MtrunA17_Chr8g0363841 | 28.966 | 290 | 172 | 7 | 118 | 391 | 20 | 291 | 4.08e-30 | 122 |
| Msa1402940 | MtrunA17_Chr5g0448761 | 30.690 | 290 | 175 | 7 | 113 | 387 | 58 | 336 | 5.35e-29 | 119 |
| Msa1402940 | MtrunA17_Chr5g0441581 | 29.897 | 291 | 160 | 10 | 115 | 390 | 32 | 293 | 1.60e-27 | 115 |
| Msa1402940 | MtrunA17_Chr1g0202341 | 28.173 | 323 | 199 | 9 | 80 | 389 | 20 | 322 | 4.07e-27 | 114 |
| Msa1402940 | MtrunA17_Chr5g0440451 | 26.282 | 312 | 178 | 9 | 108 | 391 | 34 | 321 | 4.09e-27 | 114 |
| Msa1402940 | MtrunA17_Chr3g0080351 | 28.391 | 317 | 177 | 9 | 113 | 408 | 74 | 361 | 6.74e-27 | 113 |
| Msa1402940 | MtrunA17_Chr4g0064601 | 70.000 | 80 | 21 | 1 | 7 | 86 | 55 | 131 | 9.42e-26 | 105 |
| Msa1402940 | MtrunA17_Chr3g0082121 | 27.798 | 277 | 184 | 7 | 114 | 387 | 42 | 305 | 9.02e-25 | 106 |
| Msa1402940 | MtrunA17_Chr2g0287061 | 27.213 | 305 | 167 | 10 | 94 | 391 | 165 | 421 | 2.16e-23 | 102 |
| Msa1402940 | MtrunA17_Chr2g0296781 | 26.786 | 280 | 180 | 6 | 121 | 391 | 3 | 266 | 2.60e-23 | 102 |
| Msa1402940 | MtrunA17_Chr2g0329031 | 25.714 | 315 | 198 | 6 | 86 | 396 | 1 | 283 | 5.52e-23 | 101 |
| Msa1402940 | MtrunA17_Chr1g0203721 | 26.460 | 291 | 180 | 8 | 118 | 391 | 66 | 339 | 1.38e-21 | 97.4 |
| Msa1402940 | MtrunA17_Chr1g0207551 | 26.644 | 289 | 183 | 6 | 115 | 391 | 34 | 305 | 2.55e-20 | 93.6 |
| Msa1402940 | MtrunA17_Chr2g0291591 | 25.503 | 298 | 181 | 10 | 111 | 391 | 60 | 333 | 3.03e-19 | 89.7 |
| Msa1402940 | MtrunA17_Chr6g0477261 | 39.604 | 101 | 61 | 0 | 291 | 391 | 55 | 155 | 4.38e-19 | 89.7 |
| Msa1402940 | MtrunA17_Chr3g0118611 | 36.134 | 119 | 72 | 2 | 273 | 391 | 104 | 218 | 2.30e-18 | 87.4 |
| Msa1402940 | MtrunA17_Chr2g0291581 | 22.662 | 278 | 184 | 9 | 121 | 391 | 77 | 330 | 7.78e-15 | 76.6 |
| Msa1402940 | MtrunA17_Chr1g0164591 | 40.476 | 84 | 50 | 0 | 308 | 391 | 106 | 189 | 9.95e-15 | 74.7 |
| Msa1402940 | MtrunA17_Chr5g0448511 | 36.735 | 98 | 62 | 0 | 294 | 391 | 15 | 112 | 2.78e-14 | 74.7 |
| Msa1402940 | MtrunA17_Chr2g0324011 | 23.404 | 282 | 195 | 6 | 115 | 387 | 10 | 279 | 5.10e-13 | 70.9 |
| Msa1402940 | MtrunA17_Chr1g0196541 | 36.986 | 73 | 46 | 0 | 315 | 387 | 190 | 262 | 4.81e-12 | 67.8 |
| Msa1402940 | MtrunA17_Chr1g0171741 | 30.857 | 175 | 100 | 8 | 69 | 238 | 89 | 247 | 1.28e-11 | 64.7 |
| Msa1402940 | MtrunA17_Chr2g0329361 | 29.000 | 200 | 112 | 9 | 67 | 253 | 11 | 193 | 6.33e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402940 | AT1G10240.2 | 44.375 | 320 | 161 | 4 | 80 | 391 | 17 | 327 | 1.36e-86 | 277 |
| Msa1402940 | AT1G10240.1 | 44.375 | 320 | 161 | 4 | 80 | 391 | 17 | 327 | 1.36e-86 | 277 |
| Msa1402940 | AT5G28530.3 | 43.396 | 318 | 155 | 6 | 92 | 391 | 32 | 342 | 2.81e-79 | 258 |
| Msa1402940 | AT5G28530.2 | 43.396 | 318 | 155 | 6 | 92 | 391 | 32 | 342 | 2.81e-79 | 258 |
| Msa1402940 | AT5G28530.1 | 43.396 | 318 | 155 | 6 | 92 | 391 | 32 | 342 | 2.89e-79 | 258 |
| Msa1402940 | AT5G28530.5 | 35.667 | 300 | 141 | 6 | 92 | 391 | 32 | 279 | 8.12e-50 | 178 |
| Msa1402940 | AT5G28530.4 | 35.667 | 300 | 141 | 6 | 92 | 391 | 32 | 279 | 8.74e-50 | 178 |
| Msa1402940 | AT4G38180.1 | 30.450 | 289 | 173 | 6 | 113 | 387 | 71 | 345 | 1.04e-29 | 122 |
| Msa1402940 | AT3G22170.2 | 25.256 | 293 | 179 | 7 | 113 | 391 | 68 | 334 | 8.02e-24 | 104 |
| Msa1402940 | AT3G22170.1 | 25.256 | 293 | 179 | 7 | 113 | 391 | 68 | 334 | 8.02e-24 | 104 |
| Msa1402940 | AT2G27110.2 | 25.850 | 294 | 185 | 7 | 115 | 406 | 49 | 311 | 1.05e-22 | 101 |
| Msa1402940 | AT2G27110.1 | 25.850 | 294 | 185 | 7 | 115 | 406 | 49 | 311 | 1.05e-22 | 101 |
| Msa1402940 | AT4G15090.1 | 27.740 | 292 | 183 | 7 | 113 | 391 | 49 | 325 | 1.14e-21 | 98.2 |
| Msa1402940 | AT4G15090.5 | 27.740 | 292 | 183 | 7 | 113 | 391 | 49 | 325 | 1.14e-21 | 98.2 |
| Msa1402940 | AT4G15090.3 | 27.740 | 292 | 183 | 7 | 113 | 391 | 49 | 325 | 1.14e-21 | 98.2 |
| Msa1402940 | AT4G15090.2 | 27.740 | 292 | 183 | 7 | 113 | 391 | 49 | 325 | 1.14e-21 | 98.2 |
| Msa1402940 | AT4G15090.4 | 27.740 | 292 | 183 | 7 | 113 | 391 | 49 | 325 | 1.14e-21 | 98.2 |
| Msa1402940 | AT1G76320.2 | 24.638 | 276 | 185 | 7 | 121 | 390 | 3 | 261 | 5.69e-20 | 92.8 |
| Msa1402940 | AT1G76320.1 | 24.638 | 276 | 185 | 7 | 121 | 390 | 3 | 261 | 5.91e-20 | 92.8 |
| Msa1402940 | AT1G76320.4 | 24.638 | 276 | 185 | 7 | 121 | 390 | 3 | 261 | 5.91e-20 | 92.8 |
| Msa1402940 | AT1G76320.3 | 24.638 | 276 | 185 | 7 | 121 | 390 | 3 | 261 | 8.06e-20 | 92.4 |
| Msa1402940 | AT3G06250.2 | 25.271 | 277 | 166 | 6 | 115 | 391 | 190 | 425 | 5.23e-18 | 86.7 |
| Msa1402940 | AT3G06250.1 | 25.271 | 277 | 166 | 6 | 115 | 391 | 190 | 425 | 5.23e-18 | 86.7 |
| Msa1402940 | AT3G06250.3 | 25.271 | 277 | 166 | 6 | 115 | 391 | 190 | 425 | 5.23e-18 | 86.7 |
| Msa1402940 | AT2G27110.3 | 32.800 | 125 | 82 | 1 | 282 | 406 | 44 | 166 | 9.99e-18 | 85.9 |
| Msa1402940 | AT1G80010.1 | 22.903 | 310 | 184 | 10 | 115 | 396 | 95 | 377 | 1.32e-17 | 85.5 |
| Msa1402940 | AT2G34460.1 | 55.263 | 76 | 31 | 1 | 11 | 86 | 47 | 119 | 2.35e-17 | 82.0 |
| Msa1402940 | AT1G52520.1 | 24.315 | 292 | 191 | 10 | 114 | 397 | 84 | 353 | 1.21e-14 | 76.3 |
| Msa1402940 | AT4G38170.1 | 41.558 | 77 | 41 | 2 | 316 | 391 | 41 | 114 | 6.50e-12 | 67.8 |
Find 54 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCATCTGGTCTTTATAAA+AGG | 0.174050 | tig0022949:-37735 | Msa1402940:CDS |
| ATGATATGCCACTTGGAATA+TGG | 0.191467 | tig0022949:-37150 | Msa1402940:CDS |
| CACGGAAATTCAACTTTCTT+TGG | 0.226894 | tig0022949:-37112 | Msa1402940:CDS |
| CAACTCTGGGATTGAATAAA+AGG | 0.228037 | tig0022949:+37376 | Msa1402940:intergenic |
| TTCCTTTGCGTGGGCTTTAA+AGG | 0.228847 | tig0022949:-37059 | Msa1402940:CDS |
| ATTCGAGCATACGAATCTTT+TGG | 0.279666 | tig0022949:-37214 | Msa1402940:CDS |
| TCATCACAATCATGAGTTAT+TGG | 0.289585 | tig0022949:-37548 | Msa1402940:CDS |
| TATTGATGAATGTAACAAAT+TGG | 0.311506 | tig0022949:-37266 | Msa1402940:CDS |
| CCTCATGTCAGTAACATTGA+TGG | 0.379564 | tig0022949:-37895 | Msa1402940:CDS |
| ATTCAATCCCAGAGTTGTAT+TGG | 0.389914 | tig0022949:-37370 | Msa1402940:CDS |
| AATAGTGAATTCATATTTGA+AGG | 0.396961 | tig0022949:+37285 | Msa1402940:intergenic |
| TGGTAGTGATTGGCAATCTA+AGG | 0.404374 | tig0022949:-38001 | Msa1402940:CDS |
| TTTCTTTACCAATACAACTC+TGG | 0.409477 | tig0022949:+37362 | Msa1402940:intergenic |
| GAGCATATTATGTGGGCATT+TGG | 0.419517 | tig0022949:-37244 | Msa1402940:CDS |
| CTTTCTTCTTCAAACTCAAA+GGG | 0.431563 | tig0022949:+38654 | Msa1402940:intergenic |
| TGATATGCCACTTGGAATAT+GGG | 0.434301 | tig0022949:-37149 | Msa1402940:CDS |
| TTCTTTACCAATACAACTCT+GGG | 0.436134 | tig0022949:+37363 | Msa1402940:intergenic |
| AACCAGCTTTCGACAACAAT+AGG | 0.437905 | tig0022949:+37461 | Msa1402940:intergenic |
| CCCATCTGGTCTTTATAAAA+GGG | 0.446061 | tig0022949:-37734 | Msa1402940:CDS |
| AATCTTACAAATTGAAGAGA+TGG | 0.450016 | tig0022949:+38506 | Msa1402940:intergenic |
| ATCCTATTGTTGTCGAAAGC+TGG | 0.455314 | tig0022949:-37463 | Msa1402940:CDS |
| AAAATAATGATGGTAGTGAT+TGG | 0.465147 | tig0022949:-38011 | Msa1402940:CDS |
| GGGAAAATATTTAGTAATGA+TGG | 0.465661 | tig0022949:-37856 | Msa1402940:CDS |
| GTGGAACAGTTACTTGCAAA+GGG | 0.483433 | tig0022949:-38590 | Msa1402940:CDS |
| TAAAGCTGGGGCTAGAGACT+TGG | 0.493337 | tig0022949:-38558 | Msa1402940:CDS |
| ACTTTCTTCTTCAAACTCAA+AGG | 0.501552 | tig0022949:+38653 | Msa1402940:intergenic |
| TACAAATTGAAGAGATGGGT+TGG | 0.506542 | tig0022949:+38511 | Msa1402940:intergenic |
| TGTGGAACAGTTACTTGCAA+AGG | 0.506658 | tig0022949:-38591 | Msa1402940:CDS |
| TGTCAGTAACATTGATGGGT+TGG | 0.515305 | tig0022949:-37890 | Msa1402940:CDS |
| GCTGGAGCTACTGGTAGCAC+TGG | 0.522391 | tig0022949:-38623 | Msa1402940:CDS |
| GTTGGAATGTTGCGATAAGT+AGG | 0.526828 | tig0022949:+37502 | Msa1402940:intergenic |
| ACAAATTGGAGCATATTATG+TGG | 0.539309 | tig0022949:-37252 | Msa1402940:CDS |
| ATCTTACAAATTGAAGAGAT+GGG | 0.541750 | tig0022949:+38507 | Msa1402940:intergenic |
| AGAAGATTTCTTCCTTTGCG+TGG | 0.551128 | tig0022949:-37069 | Msa1402940:CDS |
| GAAGATTTCTTCCTTTGCGT+GGG | 0.554338 | tig0022949:-37068 | Msa1402940:CDS |
| ATACGACTTTGATCAGCAGT+TGG | 0.558928 | tig0022949:+37484 | Msa1402940:intergenic |
| AATCGTTATGATATGCCACT+TGG | 0.563602 | tig0022949:-37157 | Msa1402940:CDS |
| CTCATGTCAGTAACATTGAT+GGG | 0.568274 | tig0022949:-37894 | Msa1402940:CDS |
| AGGGAATTTGTTTGTCATCG+TGG | 0.571012 | tig0022949:-37715 | Msa1402940:CDS |
| ACAACGCAACATTAACGAAG+TGG | 0.585119 | tig0022949:-37680 | Msa1402940:CDS |
| AAATCTTCAAAATGTAATTG+TGG | 0.587616 | tig0022949:-37640 | Msa1402940:CDS |
| TAATTGTGGTGCAAAGATGT+TGG | 0.590746 | tig0022949:-37626 | Msa1402940:CDS |
| CAAATTGGAGCATATTATGT+GGG | 0.593912 | tig0022949:-37251 | Msa1402940:CDS |
| CTGGAGCTACTGGTAGCACT+GGG | 0.600433 | tig0022949:-38622 | Msa1402940:CDS |
| TAGCACTGGGAAAAGAATTG+TGG | 0.606512 | tig0022949:-38609 | Msa1402940:CDS |
| TCTTCTTCAAACTCAAAGGG+AGG | 0.608853 | tig0022949:+38657 | Msa1402940:intergenic |
| TGGGTTGGTGTTGATAATCA+CGG | 0.609843 | tig0022949:-37130 | Msa1402940:CDS |
| ATGTCTGAAGAAAATAATGA+TGG | 0.610520 | tig0022949:-38021 | Msa1402940:CDS |
| TACCTTTAAAGCCCACGCAA+AGG | 0.613106 | tig0022949:+37057 | Msa1402940:intergenic |
| GAATTTGTTTGTCATCGTGG+TGG | 0.635704 | tig0022949:-37712 | Msa1402940:CDS |
| ATGCCACTTGGAATATGGGT+TGG | 0.648688 | tig0022949:-37145 | Msa1402940:CDS |
| CCATCAATGTTACTGACATG+AGG | 0.654897 | tig0022949:+37895 | Msa1402930:intergenic |
| ACACCAACCCATATTCCAAG+TGG | 0.679959 | tig0022949:+37142 | Msa1402930:intergenic |
| ATAACGATTTATTCTATACG+TGG | 0.695494 | tig0022949:+37171 | Msa1402930:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGGATTTTTATTTATTTATA+AGG | - | tig0022949:37823-37842 | Msa1402940:CDS | 10.0% |
| !!! | TGGATTTTTATTTATTTATA+AGG | - | tig0022949:37823-37842 | Msa1402940:CDS | 10.0% |
| !!! | TTTTAATGATAAATATGTCA+TGG | - | tig0022949:37101-37120 | Msa1402940:CDS | 15.0% |
| !!! | ACTTAATTAAAGAAGTTTTT+TGG | - | tig0022949:37912-37931 | Msa1402940:CDS | 15.0% |
| !!! | CTTAATTAAAGAAGTTTTTT+GGG | - | tig0022949:37913-37932 | Msa1402940:CDS | 15.0% |
| !!! | TTTTAATGATAAATATGTCA+TGG | - | tig0022949:37101-37120 | Msa1402940:CDS | 15.0% |
| !!! | ACTTAATTAAAGAAGTTTTT+TGG | - | tig0022949:37912-37931 | Msa1402940:CDS | 15.0% |
| !!! | CTTAATTAAAGAAGTTTTTT+GGG | - | tig0022949:37913-37932 | Msa1402940:CDS | 15.0% |
| !!! | TATCGATCAATATATTTTGA+TGG | - | tig0022949:37129-37148 | Msa1402940:CDS | 20.0% |
| !!! | ATAATAAGTTGACTTCAATA+AGG | + | tig0022949:37229-37248 | Msa1402940:intergenic | 20.0% |
| !! | TATGGCCATTATATATATAT+AGG | - | tig0022949:37309-37328 | Msa1402940:CDS | 20.0% |
| !! | ATGGCCATTATATATATATA+GGG | - | tig0022949:37310-37329 | Msa1402940:CDS | 20.0% |
| !! | ATCACCCTATATATATATAA+TGG | + | tig0022949:37317-37336 | Msa1402940:intergenic | 20.0% |
| !!! | TTGTTTTTAAAGAAAGAGAA+TGG | + | tig0022949:37413-37432 | Msa1402940:intergenic | 20.0% |
| !! | TAAAAACAATTGAAGACAAA+AGG | - | tig0022949:37424-37443 | Msa1402940:CDS | 20.0% |
| !! | AAAAACAATTGAAGACAAAA+GGG | - | tig0022949:37425-37444 | Msa1402940:CDS | 20.0% |
| !!! | TCCCATTTTTAAATATCATT+TGG | - | tig0022949:37798-37817 | Msa1402940:CDS | 20.0% |
| !! | CCCAAATGATATTTAAAAAT+GGG | + | tig0022949:37802-37821 | Msa1402940:intergenic | 20.0% |
| !!! | CCCATTTTTAAATATCATTT+GGG | - | tig0022949:37799-37818 | Msa1402940:CDS | 20.0% |
| !! | ACCCAAATGATATTTAAAAA+TGG | + | tig0022949:37803-37822 | Msa1402940:intergenic | 20.0% |
| !!! | TTTTTAAATATCATTTGGGT+TGG | - | tig0022949:37803-37822 | Msa1402940:CDS | 20.0% |
| !! | AAATCTTCAAAATGTAATTG+TGG | - | tig0022949:38594-38613 | Msa1402940:CDS | 20.0% |
| !! | TTGGTTTCTATAAAAACAAT+TGG | - | tig0022949:38627-38646 | Msa1402940:CDS | 20.0% |
| !! | TTAGAGAAAAAAATAGTTAC+AGG | - | tig0022949:38828-38847 | Msa1402940:intron | 20.0% |
| !! | AATAGTGAATTCATATTTGA+AGG | + | tig0022949:38952-38971 | Msa1402940:intergenic | 20.0% |
| !! | TATTGATGAATGTAACAAAT+TGG | - | tig0022949:38968-38987 | Msa1402940:intron | 20.0% |
| !!! | TATCGATCAATATATTTTGA+TGG | - | tig0022949:37129-37148 | Msa1402940:CDS | 20.0% |
| !!! | ATAATAAGTTGACTTCAATA+AGG | + | tig0022949:37229-37248 | Msa1402940:intergenic | 20.0% |
| !! | TATGGCCATTATATATATAT+AGG | - | tig0022949:37309-37328 | Msa1402940:CDS | 20.0% |
| !! | ATGGCCATTATATATATATA+GGG | - | tig0022949:37310-37329 | Msa1402940:CDS | 20.0% |
| !! | ATCACCCTATATATATATAA+TGG | + | tig0022949:37317-37336 | Msa1402940:intergenic | 20.0% |
| !!! | TTGTTTTTAAAGAAAGAGAA+TGG | + | tig0022949:37413-37432 | Msa1402940:intergenic | 20.0% |
| !! | TAAAAACAATTGAAGACAAA+AGG | - | tig0022949:37424-37443 | Msa1402940:CDS | 20.0% |
| !! | AAAAACAATTGAAGACAAAA+GGG | - | tig0022949:37425-37444 | Msa1402940:CDS | 20.0% |
| !!! | TCCCATTTTTAAATATCATT+TGG | - | tig0022949:37798-37817 | Msa1402940:CDS | 20.0% |
| !! | CCCAAATGATATTTAAAAAT+GGG | + | tig0022949:37802-37821 | Msa1402940:intergenic | 20.0% |
| !!! | CCCATTTTTAAATATCATTT+GGG | - | tig0022949:37799-37818 | Msa1402940:CDS | 20.0% |
| !! | ACCCAAATGATATTTAAAAA+TGG | + | tig0022949:37803-37822 | Msa1402940:intergenic | 20.0% |
| !!! | TTTTTAAATATCATTTGGGT+TGG | - | tig0022949:37803-37822 | Msa1402940:CDS | 20.0% |
| !! | AAATCTTCAAAATGTAATTG+TGG | - | tig0022949:38594-38613 | Msa1402940:CDS | 20.0% |
| !! | TTGGTTTCTATAAAAACAAT+TGG | - | tig0022949:38627-38646 | Msa1402940:CDS | 20.0% |
| !! | TTAGAGAAAAAAATAGTTAC+AGG | - | tig0022949:38828-38847 | Msa1402940:intron | 20.0% |
| !! | AATAGTGAATTCATATTTGA+AGG | + | tig0022949:38952-38971 | Msa1402940:intergenic | 20.0% |
| !! | TATTGATGAATGTAACAAAT+TGG | - | tig0022949:38968-38987 | Msa1402940:intron | 20.0% |
| !! | GTTTTCTTTGTATTTCTTTC+CGG | - | tig0022949:37157-37176 | Msa1402940:CDS | 25.0% |
| ! | TACATTTATAATGAGACAGA+TGG | - | tig0022949:37279-37298 | Msa1402940:CDS | 25.0% |
| !!! | TTTTTTCGTCTTTTACAACT+AGG | + | tig0022949:37390-37409 | Msa1402940:intergenic | 25.0% |
| ! | ATCTTACAAATTGAAGAGAT+GGG | + | tig0022949:37730-37749 | Msa1402940:intergenic | 25.0% |
| ! | AATCTTACAAATTGAAGAGA+TGG | + | tig0022949:37731-37750 | Msa1402940:intergenic | 25.0% |
| ! | TTGCAAAATAGTCCAATTTA+AGG | - | tig0022949:37771-37790 | Msa1402940:CDS | 25.0% |
| ! | AAATGGGATTAACCTTAAAT+TGG | + | tig0022949:37786-37805 | Msa1402940:intergenic | 25.0% |
| !!! | AAGTTTAGTTTGAATGTGAT+TGG | - | tig0022949:37846-37865 | Msa1402940:CDS | 25.0% |
| !!! | AGTTTAGTTTGAATGTGATT+GGG | - | tig0022949:37847-37866 | Msa1402940:CDS | 25.0% |
| !! | TGATAAGCAATTTTCATGTT+TGG | - | tig0022949:37885-37904 | Msa1402940:CDS | 25.0% |
| !! | GATAAGCAATTTTCATGTTT+GGG | - | tig0022949:37886-37905 | Msa1402940:CDS | 25.0% |
| !!! | ATTGATTTATTTTACTGTCC+TGG | - | tig0022949:37951-37970 | Msa1402940:CDS | 25.0% |
| !!! | TTGATTTATTTTACTGTCCT+GGG | - | tig0022949:37952-37971 | Msa1402940:CDS | 25.0% |
| ! | ATGTCTGAAGAAAATAATGA+TGG | - | tig0022949:38213-38232 | Msa1402940:intron | 25.0% |
| !! | AAAATAATGATGGTAGTGAT+TGG | - | tig0022949:38223-38242 | Msa1402940:intron | 25.0% |
| !! | CTAAATATTTTCCCTTCAAA+AGG | + | tig0022949:38372-38391 | Msa1402940:intergenic | 25.0% |
| ! | GGGAAAATATTTAGTAATGA+TGG | - | tig0022949:38378-38397 | Msa1402940:intron | 25.0% |
| !! | TCTTTATTTGCACGAAAAAA+TGG | - | tig0022949:38420-38439 | Msa1402940:intron | 25.0% |
| !!! | TATAAAAACAATTGGCTTTG+AGG | - | tig0022949:38635-38654 | Msa1402940:CDS | 25.0% |
| ! | ATAACGATTTATTCTATACG+TGG | + | tig0022949:39066-39085 | Msa1402940:intergenic | 25.0% |
| !! | GTTTTCTTTGTATTTCTTTC+CGG | - | tig0022949:37157-37176 | Msa1402940:CDS | 25.0% |
| ! | TACATTTATAATGAGACAGA+TGG | - | tig0022949:37279-37298 | Msa1402940:CDS | 25.0% |
| !!! | TTTTTTCGTCTTTTACAACT+AGG | + | tig0022949:37390-37409 | Msa1402940:intergenic | 25.0% |
| ! | ATCTTACAAATTGAAGAGAT+GGG | + | tig0022949:37730-37749 | Msa1402940:intergenic | 25.0% |
| ! | AATCTTACAAATTGAAGAGA+TGG | + | tig0022949:37731-37750 | Msa1402940:intergenic | 25.0% |
| ! | TTGCAAAATAGTCCAATTTA+AGG | - | tig0022949:37771-37790 | Msa1402940:CDS | 25.0% |
| ! | AAATGGGATTAACCTTAAAT+TGG | + | tig0022949:37786-37805 | Msa1402940:intergenic | 25.0% |
| !!! | AAGTTTAGTTTGAATGTGAT+TGG | - | tig0022949:37846-37865 | Msa1402940:CDS | 25.0% |
| !!! | AGTTTAGTTTGAATGTGATT+GGG | - | tig0022949:37847-37866 | Msa1402940:CDS | 25.0% |
| !! | TGATAAGCAATTTTCATGTT+TGG | - | tig0022949:37885-37904 | Msa1402940:CDS | 25.0% |
| !! | GATAAGCAATTTTCATGTTT+GGG | - | tig0022949:37886-37905 | Msa1402940:CDS | 25.0% |
| !!! | ATTGATTTATTTTACTGTCC+TGG | - | tig0022949:37951-37970 | Msa1402940:CDS | 25.0% |
| !!! | TTGATTTATTTTACTGTCCT+GGG | - | tig0022949:37952-37971 | Msa1402940:CDS | 25.0% |
| ! | ATGTCTGAAGAAAATAATGA+TGG | - | tig0022949:38213-38232 | Msa1402940:intron | 25.0% |
| !! | AAAATAATGATGGTAGTGAT+TGG | - | tig0022949:38223-38242 | Msa1402940:intron | 25.0% |
| !! | CTAAATATTTTCCCTTCAAA+AGG | + | tig0022949:38372-38391 | Msa1402940:intergenic | 25.0% |
| ! | GGGAAAATATTTAGTAATGA+TGG | - | tig0022949:38378-38397 | Msa1402940:intron | 25.0% |
| !! | TCTTTATTTGCACGAAAAAA+TGG | - | tig0022949:38420-38439 | Msa1402940:intron | 25.0% |
| !!! | TATAAAAACAATTGGCTTTG+AGG | - | tig0022949:38635-38654 | Msa1402940:CDS | 25.0% |
| ! | ATAACGATTTATTCTATACG+TGG | + | tig0022949:39066-39085 | Msa1402940:intergenic | 25.0% |
| !!! | TAAGGTTTTGTTTGTGAGTT+TGG | + | tig0022949:37211-37230 | Msa1402940:intergenic | 30.0% |
| TATAATGAGACAGATGGTAT+TGG | - | tig0022949:37285-37304 | Msa1402940:CDS | 30.0% | |
| ATGAACACCTTCACAATTAT+GGG | + | tig0022949:37355-37374 | Msa1402940:intergenic | 30.0% | |
| AATGAACACCTTCACAATTA+TGG | + | tig0022949:37356-37375 | Msa1402940:intergenic | 30.0% | |
| CTTTCTTCTTCAAACTCAAA+GGG | + | tig0022949:37583-37602 | Msa1402940:intergenic | 30.0% | |
| ACTTTCTTCTTCAAACTCAA+AGG | + | tig0022949:37584-37603 | Msa1402940:intergenic | 30.0% | |
| ! | AAGAAGAAAGTTTTTGTTGC+TGG | - | tig0022949:37593-37612 | Msa1402940:CDS | 30.0% |
| ! | GGACTATTTTGCAAGAAAAT+GGG | + | tig0022949:37765-37784 | Msa1402940:intergenic | 30.0% |
| ! | TGGACTATTTTGCAAGAAAA+TGG | + | tig0022949:37766-37785 | Msa1402940:intergenic | 30.0% |
| ! | TAACTTATTTCTTCAGCTGA+TGG | - | tig0022949:38102-38121 | Msa1402940:intron | 30.0% |
| TAGAAACTATGTGAAGAACT+TGG | + | tig0022949:38137-38156 | Msa1402940:intergenic | 30.0% | |
| !! | GAAAAAATGGATTTTCGATC+AGG | - | tig0022949:38433-38452 | Msa1402940:intron | 30.0% |
| !! | AATTGGCTTTGAGGAAAAAT+GGG | - | tig0022949:38644-38663 | Msa1402940:CDS | 30.0% |
| TCATCACAATCATGAGTTAT+TGG | - | tig0022949:38686-38705 | Msa1402940:intron | 30.0% | |
| TGAGTTATTGGATGAAAAAG+AGG | - | tig0022949:38698-38717 | Msa1402940:intron | 30.0% | |
| TTCTTTACCAATACAACTCT+GGG | + | tig0022949:38874-38893 | Msa1402940:intergenic | 30.0% | |
| TTTCTTTACCAATACAACTC+TGG | + | tig0022949:38875-38894 | Msa1402940:intergenic | 30.0% | |
| ACAAATTGGAGCATATTATG+TGG | - | tig0022949:38982-39001 | Msa1402940:intron | 30.0% | |
| CAAATTGGAGCATATTATGT+GGG | - | tig0022949:38983-39002 | Msa1402940:intron | 30.0% | |
| !!! | TAAGGTTTTGTTTGTGAGTT+TGG | + | tig0022949:37211-37230 | Msa1402940:intergenic | 30.0% |
| TATAATGAGACAGATGGTAT+TGG | - | tig0022949:37285-37304 | Msa1402940:CDS | 30.0% | |
| ATGAACACCTTCACAATTAT+GGG | + | tig0022949:37355-37374 | Msa1402940:intergenic | 30.0% | |
| AATGAACACCTTCACAATTA+TGG | + | tig0022949:37356-37375 | Msa1402940:intergenic | 30.0% | |
| CTTTCTTCTTCAAACTCAAA+GGG | + | tig0022949:37583-37602 | Msa1402940:intergenic | 30.0% | |
| ACTTTCTTCTTCAAACTCAA+AGG | + | tig0022949:37584-37603 | Msa1402940:intergenic | 30.0% | |
| ! | AAGAAGAAAGTTTTTGTTGC+TGG | - | tig0022949:37593-37612 | Msa1402940:CDS | 30.0% |
| ! | GGACTATTTTGCAAGAAAAT+GGG | + | tig0022949:37765-37784 | Msa1402940:intergenic | 30.0% |
| ! | TGGACTATTTTGCAAGAAAA+TGG | + | tig0022949:37766-37785 | Msa1402940:intergenic | 30.0% |
| ! | TAACTTATTTCTTCAGCTGA+TGG | - | tig0022949:38102-38121 | Msa1402940:intron | 30.0% |
| TAGAAACTATGTGAAGAACT+TGG | + | tig0022949:38137-38156 | Msa1402940:intergenic | 30.0% | |
| !! | GAAAAAATGGATTTTCGATC+AGG | - | tig0022949:38433-38452 | Msa1402940:intron | 30.0% |
| !! | AATTGGCTTTGAGGAAAAAT+GGG | - | tig0022949:38644-38663 | Msa1402940:CDS | 30.0% |
| TCATCACAATCATGAGTTAT+TGG | - | tig0022949:38686-38705 | Msa1402940:intron | 30.0% | |
| TGAGTTATTGGATGAAAAAG+AGG | - | tig0022949:38698-38717 | Msa1402940:intron | 30.0% | |
| TTCTTTACCAATACAACTCT+GGG | + | tig0022949:38874-38893 | Msa1402940:intergenic | 30.0% | |
| TTTCTTTACCAATACAACTC+TGG | + | tig0022949:38875-38894 | Msa1402940:intergenic | 30.0% | |
| ACAAATTGGAGCATATTATG+TGG | - | tig0022949:38982-39001 | Msa1402940:intron | 30.0% | |
| CAAATTGGAGCATATTATGT+GGG | - | tig0022949:38983-39002 | Msa1402940:intron | 30.0% | |
| !! | TTTTGTTTGTGAGTTTGGAG+AGG | + | tig0022949:37206-37225 | Msa1402940:intergenic | 35.0% |
| TACAAATTGAAGAGATGGGT+TGG | + | tig0022949:37726-37745 | Msa1402940:intergenic | 35.0% | |
| !!! | GTTTTTTGGGTTTGTTCTTG+TGG | - | tig0022949:37926-37945 | Msa1402940:CDS | 35.0% |
| GAAATAAGTTATGACATGCC+TGG | + | tig0022949:38081-38100 | Msa1402940:intergenic | 35.0% | |
| ! | TGAGGCAAATTTTCGTTTTG+TGG | + | tig0022949:38324-38343 | Msa1402940:intergenic | 35.0% |
| CTCATGTCAGTAACATTGAT+GGG | - | tig0022949:38340-38359 | Msa1402940:intron | 35.0% | |
| ! | ACCCATCTGGTCTTTATAAA+AGG | - | tig0022949:38499-38518 | Msa1402940:intron | 35.0% |
| ! | CCCTTTTATAAAGACCAGAT+GGG | + | tig0022949:38503-38522 | Msa1402940:intergenic | 35.0% |
| ! | CCCATCTGGTCTTTATAAAA+GGG | - | tig0022949:38500-38519 | Msa1402940:intron | 35.0% |
| ! | TCCCTTTTATAAAGACCAGA+TGG | + | tig0022949:38504-38523 | Msa1402940:intergenic | 35.0% |
| TAATTGTGGTGCAAAGATGT+TGG | - | tig0022949:38608-38627 | Msa1402940:CDS | 35.0% | |
| !! | CAATTGGCTTTGAGGAAAAA+TGG | - | tig0022949:38643-38662 | Msa1402940:CDS | 35.0% |
| !! | CAACTCTGGGATTGAATAAA+AGG | + | tig0022949:38861-38880 | Msa1402940:intergenic | 35.0% |
| ATTCAATCCCAGAGTTGTAT+TGG | - | tig0022949:38864-38883 | Msa1402940:intron | 35.0% | |
| ! | ATTCGAGCATACGAATCTTT+TGG | - | tig0022949:39020-39039 | Msa1402940:intron | 35.0% |
| AATCGTTATGATATGCCACT+TGG | - | tig0022949:39077-39096 | Msa1402940:intron | 35.0% | |
| ! | ATGATATGCCACTTGGAATA+TGG | - | tig0022949:39084-39103 | Msa1402940:intron | 35.0% |
| ! | TGATATGCCACTTGGAATAT+GGG | - | tig0022949:39085-39104 | Msa1402940:intron | 35.0% |
| CACGGAAATTCAACTTTCTT+TGG | - | tig0022949:39122-39141 | Msa1402940:intron | 35.0% | |
| !! | TTTTGTTTGTGAGTTTGGAG+AGG | + | tig0022949:37206-37225 | Msa1402940:intergenic | 35.0% |
| TACAAATTGAAGAGATGGGT+TGG | + | tig0022949:37726-37745 | Msa1402940:intergenic | 35.0% | |
| !!! | GTTTTTTGGGTTTGTTCTTG+TGG | - | tig0022949:37926-37945 | Msa1402940:CDS | 35.0% |
| GAAATAAGTTATGACATGCC+TGG | + | tig0022949:38081-38100 | Msa1402940:intergenic | 35.0% | |
| ! | TGAGGCAAATTTTCGTTTTG+TGG | + | tig0022949:38324-38343 | Msa1402940:intergenic | 35.0% |
| CTCATGTCAGTAACATTGAT+GGG | - | tig0022949:38340-38359 | Msa1402940:intron | 35.0% | |
| ! | ACCCATCTGGTCTTTATAAA+AGG | - | tig0022949:38499-38518 | Msa1402940:intron | 35.0% |
| ! | CCCTTTTATAAAGACCAGAT+GGG | + | tig0022949:38503-38522 | Msa1402940:intergenic | 35.0% |
| ! | CCCATCTGGTCTTTATAAAA+GGG | - | tig0022949:38500-38519 | Msa1402940:intron | 35.0% |
| ! | TCCCTTTTATAAAGACCAGA+TGG | + | tig0022949:38504-38523 | Msa1402940:intergenic | 35.0% |
| TAATTGTGGTGCAAAGATGT+TGG | - | tig0022949:38608-38627 | Msa1402940:CDS | 35.0% | |
| !! | CAATTGGCTTTGAGGAAAAA+TGG | - | tig0022949:38643-38662 | Msa1402940:CDS | 35.0% |
| !! | CAACTCTGGGATTGAATAAA+AGG | + | tig0022949:38861-38880 | Msa1402940:intergenic | 35.0% |
| ATTCAATCCCAGAGTTGTAT+TGG | - | tig0022949:38864-38883 | Msa1402940:intron | 35.0% | |
| ! | ATTCGAGCATACGAATCTTT+TGG | - | tig0022949:39020-39039 | Msa1402940:intron | 35.0% |
| AATCGTTATGATATGCCACT+TGG | - | tig0022949:39077-39096 | Msa1402940:intron | 35.0% | |
| ! | ATGATATGCCACTTGGAATA+TGG | - | tig0022949:39084-39103 | Msa1402940:intron | 35.0% |
| ! | TGATATGCCACTTGGAATAT+GGG | - | tig0022949:39085-39104 | Msa1402940:intron | 35.0% |
| CACGGAAATTCAACTTTCTT+TGG | - | tig0022949:39122-39141 | Msa1402940:intron | 35.0% | |
| GGTTGAAGAAGTTGACTAAC+GGG | + | tig0022949:37014-37033 | Msa0160820:intergenic | 40.0% | |
| CGGTTGAAGAAGTTGACTAA+CGG | + | tig0022949:37015-37034 | Msa0160820:intergenic | 40.0% | |
| CGTTAGTCAACTTCTTCAAC+CGG | - | tig0022949:37013-37032 | Msa1402940:CDS | 40.0% | |
| ! | CATATGCTTATCCTCTGAGA+TGG | + | tig0022949:37050-37069 | Msa1402940:intergenic | 40.0% |
| CATCTCAGAGGATAAGCATA+TGG | - | tig0022949:37048-37067 | Msa1402940:CDS | 40.0% | |
| TCAGAGGATAAGCATATGGT+GGG | - | tig0022949:37052-37071 | Msa1402940:CDS | 40.0% | |
| ! | GAGACAGATGGTATTGGATA+TGG | - | tig0022949:37291-37310 | Msa1402940:CDS | 40.0% |
| ACACCTTCACAATTATGGGT+GGG | + | tig0022949:37351-37370 | Msa1402940:intergenic | 40.0% | |
| AACACCTTCACAATTATGGG+TGG | + | tig0022949:37352-37371 | Msa1402940:intergenic | 40.0% | |
| ! | TCGTCTTTTACAACTAGGTG+TGG | + | tig0022949:37385-37404 | Msa1402940:intergenic | 40.0% |
| AAAGCAGCGGGAAATGAAAA+GGG | + | tig0022949:37494-37513 | Msa1402940:intergenic | 40.0% | |
| TAAAGCAGCGGGAAATGAAA+AGG | + | tig0022949:37495-37514 | Msa1402940:intergenic | 40.0% | |
| !! | TTTAGGTTGGAAACAGGGTA+GGG | + | tig0022949:37518-37537 | Msa1402940:intergenic | 40.0% |
| GAGTAAGATGAACAGGTTGT+GGG | + | tig0022949:37542-37561 | Msa1402940:intergenic | 40.0% | |
| ATGAGAGGAGTAAGATGAAC+AGG | + | tig0022949:37549-37568 | Msa1402940:intergenic | 40.0% | |
| TCTTCTTCAAACTCAAAGGG+AGG | + | tig0022949:37580-37599 | Msa1402940:intergenic | 40.0% | |
| ! | TAGCACTGGGAAAAGAATTG+TGG | - | tig0022949:37625-37644 | Msa1402940:CDS | 40.0% |
| TGTGGAACAGTTACTTGCAA+AGG | - | tig0022949:37643-37662 | Msa1402940:CDS | 40.0% | |
| GTGGAACAGTTACTTGCAAA+GGG | - | tig0022949:37644-37663 | Msa1402940:CDS | 40.0% | |
| !!! | AAGGGTTTTGCTGTTAAAGC+TGG | - | tig0022949:37662-37681 | Msa1402940:CDS | 40.0% |
| !!! | AGGGTTTTGCTGTTAAAGCT+GGG | - | tig0022949:37663-37682 | Msa1402940:CDS | 40.0% |
| GTTCTAACTTAGGCCTGTTA+TGG | - | tig0022949:37974-37993 | Msa1402940:CDS | 40.0% | |
| ! | TGGTAGTGATTGGCAATCTA+AGG | - | tig0022949:38233-38252 | Msa1402940:intron | 40.0% |
| CCATCAATGTTACTGACATG+AGG | + | tig0022949:38342-38361 | Msa1402940:intergenic | 40.0% | |
| CCTCATGTCAGTAACATTGA+TGG | - | tig0022949:38339-38358 | Msa1402940:intron | 40.0% | |
| ! | TGTCAGTAACATTGATGGGT+TGG | - | tig0022949:38344-38363 | Msa1402940:intron | 40.0% |
| !!! | ATGGGTTGGTTCCTTTTGAA+GGG | - | tig0022949:38358-38377 | Msa1402940:intron | 40.0% |
| GAGTCTAAAAAGAACCCATC+TGG | - | tig0022949:38486-38505 | Msa1402940:intron | 40.0% | |
| ! | AGGGAATTTGTTTGTCATCG+TGG | - | tig0022949:38519-38538 | Msa1402940:CDS | 40.0% |
| ! | GAATTTGTTTGTCATCGTGG+TGG | - | tig0022949:38522-38541 | Msa1402940:CDS | 40.0% |
| ACAACGCAACATTAACGAAG+TGG | - | tig0022949:38554-38573 | Msa1402940:CDS | 40.0% | |
| GTTGGAATGTTGCGATAAGT+AGG | + | tig0022949:38735-38754 | Msa1402940:intergenic | 40.0% | |
| ATACGACTTTGATCAGCAGT+TGG | + | tig0022949:38753-38772 | Msa1402940:intergenic | 40.0% | |
| ATCCTATTGTTGTCGAAAGC+TGG | - | tig0022949:38771-38790 | Msa1402940:intron | 40.0% | |
| AACCAGCTTTCGACAACAAT+AGG | + | tig0022949:38776-38795 | Msa1402940:intergenic | 40.0% | |
| GAGCATATTATGTGGGCATT+TGG | - | tig0022949:38990-39009 | Msa1402940:intron | 40.0% | |
| !! | TGGGTTGGTGTTGATAATCA+CGG | - | tig0022949:39104-39123 | Msa1402940:intron | 40.0% |
| AGAAGATTTCTTCCTTTGCG+TGG | - | tig0022949:39165-39184 | Msa1402940:intron | 40.0% | |
| GAAGATTTCTTCCTTTGCGT+GGG | - | tig0022949:39166-39185 | Msa1402940:intron | 40.0% | |
| GGTTGAAGAAGTTGACTAAC+GGG | + | tig0022949:37014-37033 | Msa1402940:intergenic | 40.0% | |
| CGGTTGAAGAAGTTGACTAA+CGG | + | tig0022949:37015-37034 | Msa1402940:intergenic | 40.0% | |
| CGTTAGTCAACTTCTTCAAC+CGG | - | tig0022949:37013-37032 | Msa1402940:CDS | 40.0% | |
| ! | CATATGCTTATCCTCTGAGA+TGG | + | tig0022949:37050-37069 | Msa1402940:intergenic | 40.0% |
| CATCTCAGAGGATAAGCATA+TGG | - | tig0022949:37048-37067 | Msa1402940:CDS | 40.0% | |
| TCAGAGGATAAGCATATGGT+GGG | - | tig0022949:37052-37071 | Msa1402940:CDS | 40.0% | |
| ! | GAGACAGATGGTATTGGATA+TGG | - | tig0022949:37291-37310 | Msa1402940:CDS | 40.0% |
| ACACCTTCACAATTATGGGT+GGG | + | tig0022949:37351-37370 | Msa1402940:intergenic | 40.0% | |
| AACACCTTCACAATTATGGG+TGG | + | tig0022949:37352-37371 | Msa1402940:intergenic | 40.0% | |
| ! | TCGTCTTTTACAACTAGGTG+TGG | + | tig0022949:37385-37404 | Msa1402940:intergenic | 40.0% |
| AAAGCAGCGGGAAATGAAAA+GGG | + | tig0022949:37494-37513 | Msa1402940:intergenic | 40.0% | |
| TAAAGCAGCGGGAAATGAAA+AGG | + | tig0022949:37495-37514 | Msa1402940:intergenic | 40.0% | |
| !! | TTTAGGTTGGAAACAGGGTA+GGG | + | tig0022949:37518-37537 | Msa1402940:intergenic | 40.0% |
| GAGTAAGATGAACAGGTTGT+GGG | + | tig0022949:37542-37561 | Msa1402940:intergenic | 40.0% | |
| ATGAGAGGAGTAAGATGAAC+AGG | + | tig0022949:37549-37568 | Msa1402940:intergenic | 40.0% | |
| TCTTCTTCAAACTCAAAGGG+AGG | + | tig0022949:37580-37599 | Msa1402940:intergenic | 40.0% | |
| ! | TAGCACTGGGAAAAGAATTG+TGG | - | tig0022949:37625-37644 | Msa1402940:CDS | 40.0% |
| TGTGGAACAGTTACTTGCAA+AGG | - | tig0022949:37643-37662 | Msa1402940:CDS | 40.0% | |
| GTGGAACAGTTACTTGCAAA+GGG | - | tig0022949:37644-37663 | Msa1402940:CDS | 40.0% | |
| !!! | AAGGGTTTTGCTGTTAAAGC+TGG | - | tig0022949:37662-37681 | Msa1402940:CDS | 40.0% |
| !!! | AGGGTTTTGCTGTTAAAGCT+GGG | - | tig0022949:37663-37682 | Msa1402940:CDS | 40.0% |
| GTTCTAACTTAGGCCTGTTA+TGG | - | tig0022949:37974-37993 | Msa1402940:CDS | 40.0% | |
| ! | TGGTAGTGATTGGCAATCTA+AGG | - | tig0022949:38233-38252 | Msa1402940:intron | 40.0% |
| CCATCAATGTTACTGACATG+AGG | + | tig0022949:38342-38361 | Msa1402940:intergenic | 40.0% | |
| CCTCATGTCAGTAACATTGA+TGG | - | tig0022949:38339-38358 | Msa1402940:intron | 40.0% | |
| ! | TGTCAGTAACATTGATGGGT+TGG | - | tig0022949:38344-38363 | Msa1402940:intron | 40.0% |
| !!! | ATGGGTTGGTTCCTTTTGAA+GGG | - | tig0022949:38358-38377 | Msa1402940:intron | 40.0% |
| GAGTCTAAAAAGAACCCATC+TGG | - | tig0022949:38486-38505 | Msa1402940:intron | 40.0% | |
| ! | AGGGAATTTGTTTGTCATCG+TGG | - | tig0022949:38519-38538 | Msa1402940:CDS | 40.0% |
| ! | GAATTTGTTTGTCATCGTGG+TGG | - | tig0022949:38522-38541 | Msa1402940:CDS | 40.0% |
| ACAACGCAACATTAACGAAG+TGG | - | tig0022949:38554-38573 | Msa1402940:CDS | 40.0% | |
| GTTGGAATGTTGCGATAAGT+AGG | + | tig0022949:38735-38754 | Msa1402940:intergenic | 40.0% | |
| ATACGACTTTGATCAGCAGT+TGG | + | tig0022949:38753-38772 | Msa1402940:intergenic | 40.0% | |
| ATCCTATTGTTGTCGAAAGC+TGG | - | tig0022949:38771-38790 | Msa1402940:intron | 40.0% | |
| AACCAGCTTTCGACAACAAT+AGG | + | tig0022949:38776-38795 | Msa1402940:intergenic | 40.0% | |
| GAGCATATTATGTGGGCATT+TGG | - | tig0022949:38990-39009 | Msa1402940:intron | 40.0% | |
| !! | TGGGTTGGTGTTGATAATCA+CGG | - | tig0022949:39104-39123 | Msa1402940:intron | 40.0% |
| AGAAGATTTCTTCCTTTGCG+TGG | - | tig0022949:39165-39184 | Msa1402940:intron | 40.0% | |
| GAAGATTTCTTCCTTTGCGT+GGG | - | tig0022949:39166-39185 | Msa1402940:intron | 40.0% | |
| TGAGATGGCGATATCACAAC+CGG | + | tig0022949:37035-37054 | Msa1402940:intergenic | 45.0% | |
| TTGTGATATCGCCATCTCAG+AGG | - | tig0022949:37036-37055 | Msa1402940:CDS | 45.0% | |
| CTCAGAGGATAAGCATATGG+TGG | - | tig0022949:37051-37070 | Msa1402940:CDS | 45.0% | |
| ! | GCATGGAAGGTATGGAAAAC+CGG | + | tig0022949:37179-37198 | Msa1402940:intergenic | 45.0% |
| !! | CTTTAGGTTGGAAACAGGGT+AGG | + | tig0022949:37519-37538 | Msa1402940:intergenic | 45.0% |
| !! | TGGGCTTTAGGTTGGAAACA+GGG | + | tig0022949:37523-37542 | Msa1402940:intergenic | 45.0% |
| ATGAACAGGTTGTGGGCTTT+AGG | + | tig0022949:37535-37554 | Msa1402940:intergenic | 45.0% | |
| GGAGTAAGATGAACAGGTTG+TGG | + | tig0022949:37543-37562 | Msa1402940:intergenic | 45.0% | |
| ! | GTTTTTGTTGCTGGAGCTAC+TGG | - | tig0022949:37602-37621 | Msa1402940:CDS | 45.0% |
| !!! | GGGTTTTGCTGTTAAAGCTG+GGG | - | tig0022949:37664-37683 | Msa1402940:CDS | 45.0% |
| ! | ACTGTCCTGGGTTCTAACTT+AGG | - | tig0022949:37964-37983 | Msa1402940:CDS | 45.0% |
| TTAGGCCTGTTATGGTCTGT+TGG | - | tig0022949:37982-38001 | Msa1402940:CDS | 45.0% | |
| TAGGCCTGTTATGGTCTGTT+GGG | - | tig0022949:37983-38002 | Msa1402940:CDS | 45.0% | |
| !!! | GATGGGTTGGTTCCTTTTGA+AGG | - | tig0022949:38357-38376 | Msa1402940:intron | 45.0% |
| !! | TGGCTTTGAGGAAAAATGGG+TGG | - | tig0022949:38647-38666 | Msa1402940:CDS | 45.0% |
| ! | ATGCCACTTGGAATATGGGT+TGG | - | tig0022949:39089-39108 | Msa1402940:intron | 45.0% |
| ACACCAACCCATATTCCAAG+TGG | + | tig0022949:39095-39114 | Msa1402940:intergenic | 45.0% | |
| ! | TTCCTTTGCGTGGGCTTTAA+AGG | - | tig0022949:39175-39194 | Msa1402940:intron | 45.0% |
| !! | TACCTTTAAAGCCCACGCAA+AGG | + | tig0022949:39180-39199 | Msa1402940:intergenic | 45.0% |
| TGAGATGGCGATATCACAAC+CGG | + | tig0022949:37035-37054 | Msa1402940:intergenic | 45.0% | |
| TTGTGATATCGCCATCTCAG+AGG | - | tig0022949:37036-37055 | Msa1402940:CDS | 45.0% | |
| CTCAGAGGATAAGCATATGG+TGG | - | tig0022949:37051-37070 | Msa1402940:CDS | 45.0% | |
| ! | GCATGGAAGGTATGGAAAAC+CGG | + | tig0022949:37179-37198 | Msa1402940:intergenic | 45.0% |
| !! | CTTTAGGTTGGAAACAGGGT+AGG | + | tig0022949:37519-37538 | Msa1402940:intergenic | 45.0% |
| !! | TGGGCTTTAGGTTGGAAACA+GGG | + | tig0022949:37523-37542 | Msa1402940:intergenic | 45.0% |
| ATGAACAGGTTGTGGGCTTT+AGG | + | tig0022949:37535-37554 | Msa1402940:intergenic | 45.0% | |
| GGAGTAAGATGAACAGGTTG+TGG | + | tig0022949:37543-37562 | Msa1402940:intergenic | 45.0% | |
| ! | GTTTTTGTTGCTGGAGCTAC+TGG | - | tig0022949:37602-37621 | Msa1402940:CDS | 45.0% |
| !!! | GGGTTTTGCTGTTAAAGCTG+GGG | - | tig0022949:37664-37683 | Msa1402940:CDS | 45.0% |
| ! | ACTGTCCTGGGTTCTAACTT+AGG | - | tig0022949:37964-37983 | Msa1402940:CDS | 45.0% |
| TTAGGCCTGTTATGGTCTGT+TGG | - | tig0022949:37982-38001 | Msa1402940:CDS | 45.0% | |
| TAGGCCTGTTATGGTCTGTT+GGG | - | tig0022949:37983-38002 | Msa1402940:CDS | 45.0% | |
| !!! | GATGGGTTGGTTCCTTTTGA+AGG | - | tig0022949:38357-38376 | Msa1402940:intron | 45.0% |
| !! | TGGCTTTGAGGAAAAATGGG+TGG | - | tig0022949:38647-38666 | Msa1402940:CDS | 45.0% |
| ! | ATGCCACTTGGAATATGGGT+TGG | - | tig0022949:39089-39108 | Msa1402940:intron | 45.0% |
| ACACCAACCCATATTCCAAG+TGG | + | tig0022949:39095-39114 | Msa1402940:intergenic | 45.0% | |
| ! | TTCCTTTGCGTGGGCTTTAA+AGG | - | tig0022949:39175-39194 | Msa1402940:intron | 45.0% |
| !! | TACCTTTAAAGCCCACGCAA+AGG | + | tig0022949:39180-39199 | Msa1402940:intergenic | 45.0% |
| ! | GAGGAAGTGCATGGAAGGTA+TGG | + | tig0022949:37187-37206 | Msa1402940:intergenic | 50.0% |
| ! | TTGGAGAGGAAGTGCATGGA+AGG | + | tig0022949:37192-37211 | Msa1402940:intergenic | 50.0% |
| ! | GAGTTTGGAGAGGAAGTGCA+TGG | + | tig0022949:37196-37215 | Msa1402940:intergenic | 50.0% |
| CCTTCACAATTATGGGTGGG+TGG | + | tig0022949:37348-37367 | Msa1402940:intergenic | 50.0% | |
| CCACCCACCCATAATTGTGA+AGG | - | tig0022949:37345-37364 | Msa1402940:CDS | 50.0% | |
| AACAGGGTAGGGTAAAGCAG+CGG | + | tig0022949:37507-37526 | Msa1402940:intergenic | 50.0% | |
| !! | GTGGGCTTTAGGTTGGAAAC+AGG | + | tig0022949:37524-37543 | Msa1402940:intergenic | 50.0% |
| !! | ACAGGTTGTGGGCTTTAGGT+TGG | + | tig0022949:37531-37550 | Msa1402940:intergenic | 50.0% |
| TAAAGCTGGGGCTAGAGACT+TGG | - | tig0022949:37676-37695 | Msa1402940:CDS | 50.0% | |
| ACAGGCCTAAGTTAGAACCC+AGG | + | tig0022949:37972-37991 | Msa1402940:intergenic | 50.0% | |
| ACCTCCCAACAGACCATAAC+AGG | + | tig0022949:37990-38009 | Msa1402940:intergenic | 50.0% | |
| ! | TGTCTTGCTGTAGCAGGAAG+TGG | - | tig0022949:38013-38032 | Msa1402940:CDS | 50.0% |
| ACAGCAGGACGCATAACAGA+GGG | + | tig0022949:38056-38075 | Msa1402940:intergenic | 50.0% | |
| AACAGCAGGACGCATAACAG+AGG | + | tig0022949:38057-38076 | Msa1402940:intergenic | 50.0% | |
| ! | GAGGAAGTGCATGGAAGGTA+TGG | + | tig0022949:37187-37206 | Msa1402940:intergenic | 50.0% |
| ! | TTGGAGAGGAAGTGCATGGA+AGG | + | tig0022949:37192-37211 | Msa1402940:intergenic | 50.0% |
| ! | GAGTTTGGAGAGGAAGTGCA+TGG | + | tig0022949:37196-37215 | Msa1402940:intergenic | 50.0% |
| CCTTCACAATTATGGGTGGG+TGG | + | tig0022949:37348-37367 | Msa1402940:intergenic | 50.0% | |
| CCACCCACCCATAATTGTGA+AGG | - | tig0022949:37345-37364 | Msa1402940:CDS | 50.0% | |
| AACAGGGTAGGGTAAAGCAG+CGG | + | tig0022949:37507-37526 | Msa1402940:intergenic | 50.0% | |
| !! | GTGGGCTTTAGGTTGGAAAC+AGG | + | tig0022949:37524-37543 | Msa1402940:intergenic | 50.0% |
| !! | ACAGGTTGTGGGCTTTAGGT+TGG | + | tig0022949:37531-37550 | Msa1402940:intergenic | 50.0% |
| TAAAGCTGGGGCTAGAGACT+TGG | - | tig0022949:37676-37695 | Msa1402940:CDS | 50.0% | |
| ACAGGCCTAAGTTAGAACCC+AGG | + | tig0022949:37972-37991 | Msa1402940:intergenic | 50.0% | |
| ACCTCCCAACAGACCATAAC+AGG | + | tig0022949:37990-38009 | Msa1402940:intergenic | 50.0% | |
| ! | TGTCTTGCTGTAGCAGGAAG+TGG | - | tig0022949:38013-38032 | Msa1402940:CDS | 50.0% |
| ACAGCAGGACGCATAACAGA+GGG | + | tig0022949:38056-38075 | Msa1402940:intergenic | 50.0% | |
| AACAGCAGGACGCATAACAG+AGG | + | tig0022949:38057-38076 | Msa1402940:intergenic | 50.0% | |
| ACAGGGTAGGGTAAAGCAGC+GGG | + | tig0022949:37506-37525 | Msa1402940:intergenic | 55.0% | |
| !! | AGGGAGGTGCTTCTGATGAG+AGG | + | tig0022949:37564-37583 | Msa1402940:intergenic | 55.0% |
| CTGGAGCTACTGGTAGCACT+GGG | - | tig0022949:37612-37631 | Msa1402940:CDS | 55.0% | |
| GCCTGTTATGGTCTGTTGGG+AGG | - | tig0022949:37986-38005 | Msa1402940:CDS | 55.0% | |
| ! | GGTTGCTGTCTTGCTGTAGC+AGG | - | tig0022949:38007-38026 | Msa1402940:CDS | 55.0% |
| TTATGCGTCCTGCTGTTGCC+AGG | - | tig0022949:38060-38079 | Msa1402940:intron | 55.0% | |
| ATGACATGCCTGGCAACAGC+AGG | + | tig0022949:38071-38090 | Msa1402940:intergenic | 55.0% | |
| ACAGGGTAGGGTAAAGCAGC+GGG | + | tig0022949:37506-37525 | Msa1402940:intergenic | 55.0% | |
| !! | AGGGAGGTGCTTCTGATGAG+AGG | + | tig0022949:37564-37583 | Msa1402940:intergenic | 55.0% |
| CTGGAGCTACTGGTAGCACT+GGG | - | tig0022949:37612-37631 | Msa1402940:CDS | 55.0% | |
| GCCTGTTATGGTCTGTTGGG+AGG | - | tig0022949:37986-38005 | Msa1402940:CDS | 55.0% | |
| ! | GGTTGCTGTCTTGCTGTAGC+AGG | - | tig0022949:38007-38026 | Msa1402940:CDS | 55.0% |
| TTATGCGTCCTGCTGTTGCC+AGG | - | tig0022949:38060-38079 | Msa1402940:intron | 55.0% | |
| ATGACATGCCTGGCAACAGC+AGG | + | tig0022949:38071-38090 | Msa1402940:intergenic | 55.0% | |
| GCTGGAGCTACTGGTAGCAC+TGG | - | tig0022949:37611-37630 | Msa1402940:CDS | 60.0% | |
| GCTGGAGCTACTGGTAGCAC+TGG | - | tig0022949:37611-37630 | Msa1402940:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022949 | gene | 36997 | 39259 | 36997 | ID=Msa1402940;Name=Msa1402940 |
| tig0022949 | mRNA | 36997 | 39259 | 36997 | ID=Msa1402940-mRNA-1;Parent=Msa1402940;Name=Msa1402940-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0|0|0.33|1|1|3|0|410 |
| tig0022949 | exon | 39254 | 39259 | 39254 | ID=Msa1402940-mRNA-1:exon:19137;Parent=Msa1402940-mRNA-1 |
| tig0022949 | exon | 38514 | 38684 | 38514 | ID=Msa1402940-mRNA-1:exon:19136;Parent=Msa1402940-mRNA-1 |
| tig0022949 | exon | 36997 | 38052 | 36997 | ID=Msa1402940-mRNA-1:exon:19135;Parent=Msa1402940-mRNA-1 |
| tig0022949 | CDS | 39254 | 39259 | 39254 | ID=Msa1402940-mRNA-1:cds;Parent=Msa1402940-mRNA-1 |
| tig0022949 | CDS | 38514 | 38684 | 38514 | ID=Msa1402940-mRNA-1:cds;Parent=Msa1402940-mRNA-1 |
| tig0022949 | CDS | 36997 | 38052 | 36997 | ID=Msa1402940-mRNA-1:cds;Parent=Msa1402940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
