AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1403990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403990 MtrunA17_Chr2g0287651 41.092 696 365 7 89 753 63 744 4.23e-178 539
Msa1403990 MtrunA17_Chr1g0203051 32.550 596 353 8 64 618 34 621 5.20e-100 327
Msa1403990 MtrunA17_Chr1g0202341 31.293 588 353 12 100 646 50 627 9.81e-82 279
Msa1403990 MtrunA17_Chr5g0448761 30.877 570 347 10 105 633 64 627 2.67e-79 275
Msa1403990 MtrunA17_Chr2g0324011 27.517 596 388 7 95 652 4 593 1.72e-71 248
Msa1403990 MtrunA17_Chr8g0363841 26.562 640 409 11 97 686 9 637 6.13e-68 240
Msa1403990 MtrunA17_Chr5g0441581 26.783 631 397 12 105 694 36 642 1.93e-67 239
Msa1403990 MtrunA17_Chr1g0198761 28.006 707 427 17 106 754 52 734 9.96e-67 238
Msa1403990 MtrunA17_Chr2g0296781 27.393 679 418 17 105 734 1 653 1.03e-66 238
Msa1403990 MtrunA17_Chr1g0203721 26.645 623 412 12 107 694 69 681 2.01e-66 239
Msa1403990 MtrunA17_Chr3g0082121 28.013 614 375 13 104 674 46 635 6.52e-63 226
Msa1403990 MtrunA17_Chr6g0477261 31.616 427 253 6 241 631 22 445 2.20e-61 221
Msa1403990 MtrunA17_Chr1g0207551 28.070 570 349 10 105 631 38 589 1.26e-60 222
Msa1403990 MtrunA17_Chr6g0458391 25.750 567 351 12 105 631 229 765 1.82e-59 218
Msa1403990 MtrunA17_Chr3g0080351 26.763 624 364 14 96 669 71 651 3.10e-58 215
Msa1403990 MtrunA17_Chr2g0329031 24.635 617 392 13 88 664 1 584 9.70e-57 209
Msa1403990 MtrunA17_Chr1g0196541 27.944 569 355 13 105 631 1 556 2.22e-56 208
Msa1403990 MtrunA17_Chr5g0440451 26.045 622 390 16 105 679 47 645 2.46e-54 204
Msa1403990 MtrunA17_Chr5g0448511 28.212 397 251 5 267 632 5 398 2.06e-52 192
Msa1403990 MtrunA17_Chr2g0290391 25.806 651 405 20 105 700 55 682 1.09e-51 194
Msa1403990 MtrunA17_Chr5g0431001 29.904 418 245 8 106 478 66 480 3.08e-51 188
Msa1403990 MtrunA17_Chr3g0118611 27.756 508 311 12 207 679 56 542 2.36e-50 191
Msa1403990 MtrunA17_Chr2g0276841 25.760 625 408 15 107 691 76 684 2.26e-49 187
Msa1403990 MtrunA17_Chr2g0287061 26.853 607 363 17 107 679 189 748 2.32e-48 185
Msa1403990 MtrunA17_Chr2g0291581 26.186 569 356 13 105 631 75 621 7.96e-48 182
Msa1403990 MtrunA17_Chr2g0291591 29.072 485 294 13 102 550 65 535 1.35e-45 173
Msa1403990 MtrunA17_Chr2g0294841 26.435 575 358 16 107 632 51 609 1.73e-44 173
Msa1403990 MtrunA17_Chr1g0164591 33.202 253 153 4 188 434 12 254 1.56e-39 149
Msa1403990 MtrunA17_Chr7g0258861 30.877 285 178 4 105 378 14 290 5.81e-37 141
Msa1403990 MtrunA17_Chr2g0308841 29.237 236 139 2 432 641 4 237 2.12e-24 103
Msa1403990 MtrunA17_Chr8g0340801 33.945 109 70 1 209 317 1 107 3.56e-14 69.7
Msa1403990 MtrunA17_Chr1g0171741 25.238 210 121 5 15 220 77 254 7.26e-13 70.1
Msa1403990 MtrunA17_Chr6g0451441 26.772 254 163 8 24 265 4 246 8.56e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403990 AT4G38180.1 30.108 651 401 15 23 635 4 638 2.70e-77 269
Msa1403990 AT4G15090.1 28.657 670 422 16 53 681 2 656 1.33e-71 254
Msa1403990 AT4G15090.5 28.657 670 422 16 53 681 2 656 1.33e-71 254
Msa1403990 AT4G15090.3 28.657 670 422 16 53 681 2 656 1.33e-71 254
Msa1403990 AT4G15090.2 28.657 670 422 16 53 681 2 656 1.33e-71 254
Msa1403990 AT4G15090.4 28.657 670 422 16 53 681 2 656 1.33e-71 254
Msa1403990 AT3G22170.2 25.436 688 423 15 52 690 30 676 1.48e-58 216
Msa1403990 AT3G22170.1 25.436 688 423 15 52 690 30 676 1.48e-58 216
Msa1403990 AT2G27110.2 25.497 604 372 13 105 673 53 613 5.35e-54 203
Msa1403990 AT2G27110.1 25.497 604 372 13 105 673 53 613 5.35e-54 203
Msa1403990 AT5G28530.1 27.036 577 363 13 107 637 61 625 1.00e-53 200
Msa1403990 AT5G28530.3 26.863 577 360 14 107 637 61 621 1.81e-52 196
Msa1403990 AT5G28530.2 26.863 577 360 14 107 637 61 621 1.81e-52 196
Msa1403990 AT1G76320.1 26.178 573 354 16 105 634 1 547 4.07e-52 196
Msa1403990 AT1G76320.4 26.178 573 354 16 105 634 1 547 4.07e-52 196
Msa1403990 AT1G76320.2 26.178 573 354 16 105 634 1 547 4.79e-52 196
Msa1403990 AT1G76320.3 26.178 573 354 16 105 634 1 547 5.55e-52 194
Msa1403990 AT3G06250.2 25.748 602 376 12 105 679 194 751 1.61e-51 194
Msa1403990 AT3G06250.1 25.748 602 376 12 105 679 194 751 1.61e-51 194
Msa1403990 AT3G06250.3 25.748 602 376 12 105 679 194 751 1.61e-51 194
Msa1403990 AT2G27110.3 28.605 430 265 8 274 673 51 468 3.68e-50 189
Msa1403990 AT1G10240.2 25.674 631 401 15 107 691 54 662 1.41e-48 184
Msa1403990 AT1G10240.1 25.674 631 401 15 107 691 54 662 1.41e-48 184
Msa1403990 AT4G19990.6 25.868 576 341 13 107 635 27 563 1.65e-48 186
Msa1403990 AT4G19990.2 25.868 576 341 13 107 635 27 563 1.65e-48 186
Msa1403990 AT1G80010.1 26.461 616 374 20 80 640 79 670 1.74e-48 185
Msa1403990 AT4G19990.7 26.144 612 357 16 79 635 6 577 1.99e-48 185
Msa1403990 AT4G19990.5 26.215 576 339 14 107 635 27 563 2.52e-48 185
Msa1403990 AT4G19990.3 26.215 576 339 14 107 635 27 563 2.59e-48 185
Msa1403990 AT4G19990.4 26.215 576 339 14 107 635 27 563 2.59e-48 185
Msa1403990 AT1G52520.1 26.690 577 356 15 105 636 89 643 4.33e-48 183
Msa1403990 AT2G32250.2 26.786 616 341 18 105 671 42 596 1.55e-47 183
Msa1403990 AT2G32250.4 26.786 616 341 18 105 671 42 596 1.55e-47 183
Msa1403990 AT2G32250.6 26.786 616 341 18 105 671 42 596 2.09e-47 182
Msa1403990 AT2G32250.1 26.786 616 341 18 105 671 42 596 2.09e-47 182
Msa1403990 AT2G32250.3 26.786 616 341 18 105 671 42 596 2.09e-47 182
Msa1403990 AT2G32250.7 26.623 616 342 18 105 671 1 555 2.18e-47 182
Msa1403990 AT2G32250.8 26.623 616 342 18 105 671 1 555 2.30e-47 182
Msa1403990 AT5G18960.2 25.207 603 381 14 105 679 215 775 2.34e-47 182
Msa1403990 AT5G18960.1 25.207 603 381 14 105 679 215 775 2.34e-47 182
Msa1403990 AT2G32250.5 26.786 616 341 18 105 671 42 596 2.62e-47 182
Msa1403990 AT4G19990.1 28.070 399 253 6 269 635 110 506 1.00e-46 179
Msa1403990 AT4G38170.1 27.701 361 220 7 306 631 45 399 3.00e-43 166
Msa1403990 AT5G28530.4 23.986 567 330 16 107 637 61 562 2.18e-33 137
Msa1403990 AT5G28530.5 23.633 567 328 16 107 637 61 558 3.44e-32 134

Find 163 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTGATCCACCATTATT+TGG 0.155571 tig0022985:-43170 None:intergenic
TCAATGTTGATTGTGATATT+TGG 0.171428 tig0022985:-42933 None:intergenic
CAAAGGTGATGCCTTGTATT+TGG 0.176136 tig0022985:-41425 None:intergenic
CTCTTGCAAATCAGACTTTC+AGG 0.192125 tig0022985:-42144 None:intergenic
TGTTCTAATTGTAGAAATAT+TGG 0.215041 tig0022985:+42510 Msa1403990:CDS
TGCTACTTTGAGTTACTTCC+AGG 0.237219 tig0022985:+41043 Msa1403990:CDS
TCACTCAATTTGCGGTAATT+AGG 0.258248 tig0022985:-40846 None:intergenic
CCATCAGTAATCACCGCTTT+TGG 0.302214 tig0022985:-41365 None:intergenic
TCCATACTTGTTCTTTCTAT+AGG 0.305560 tig0022985:-41204 None:intergenic
CCCATAGTTTCTCAATGTTC+TGG 0.308400 tig0022985:-43426 None:intergenic
GTTCTAATTGTAGAAATATT+GGG 0.312624 tig0022985:+42511 Msa1403990:CDS
TAACACCATACCCAACATTA+TGG 0.313783 tig0022985:-43121 None:intergenic
ATCACTCGCAGCATATTTAC+TGG 0.315239 tig0022985:-42397 None:intergenic
ACCTATAGAAAGAACAAGTA+TGG 0.349144 tig0022985:+41203 Msa1403990:CDS
ACGACTTTGTTCGTACGATT+TGG 0.356788 tig0022985:+40757 Msa1403990:CDS
TTATAAACCCAAGTCCTTCA+TGG 0.357517 tig0022985:-40956 None:intergenic
GCACCAATTCCAGCAAGTTC+TGG 0.360337 tig0022985:-42552 None:intergenic
ATGTGACAGATGATGATATA+AGG 0.367162 tig0022985:+40502 Msa1403990:CDS
GAGTTTACATTTACAGATGA+TGG 0.367609 tig0022985:+41098 Msa1403990:CDS
AGGTTTGACTATGAGTGTTT+TGG 0.368898 tig0022985:+41158 Msa1403990:CDS
TAAGAGCGCAAGTGACTATA+AGG 0.371870 tig0022985:+42296 Msa1403990:CDS
TTACCCACCTGTTGTTTGAT+AGG 0.378005 tig0022985:-41586 None:intergenic
GACTATAAGGAGGCTCTAGA+AGG 0.383571 tig0022985:+42309 Msa1403990:CDS
AATGGTGTGACCTGTGACTT+TGG 0.386330 tig0022985:+43050 Msa1403990:CDS
TGTAAGAACATGTCATATCT+TGG 0.387474 tig0022985:+40908 Msa1403990:CDS
CACTATGGGGTGCCAAATAA+TGG 0.393131 tig0022985:+43158 Msa1403990:CDS
ATCCATGTTGTCATACTTCA+TGG 0.394339 tig0022985:-42115 None:intergenic
AGATGATGATATAAGGGATA+TGG 0.394914 tig0022985:+40509 Msa1403990:CDS
ATCATTCGCAACAAATTTGT+TGG 0.403036 tig0022985:-42424 None:intergenic
TCTAACACTGCTCTGCATAC+TGG 0.407068 tig0022985:+43230 Msa1403990:CDS
ATATAATTTCACGGATCATC+AGG 0.409639 tig0022985:+40989 Msa1403990:CDS
TTTGGGCAGATTCTACTAGT+AGG 0.409763 tig0022985:+41138 Msa1403990:CDS
AACAAATACAAGCACTAGAA+AGG 0.422563 tig0022985:+42893 Msa1403990:CDS
TGTCCAGAACTTGCTGGAAT+TGG 0.422787 tig0022985:+42549 Msa1403990:CDS
AAAGTTTAAAGATGTCAAAA+AGG 0.436388 tig0022985:+41894 Msa1403990:CDS
GATTCATTATTAGACTCAAT+AGG 0.441470 tig0022985:-42606 None:intergenic
CGCAGAACAATTAGTTCGAA+TGG 0.445789 tig0022985:-40718 None:intergenic
TATCAACTTCACTCAATTTG+CGG 0.446828 tig0022985:-40854 None:intergenic
AAGGGTGGCCATGAAGGACT+TGG 0.449428 tig0022985:+40948 Msa1403990:CDS
GCAAGGGTTAAAATAAAAGA+TGG 0.464290 tig0022985:+41011 Msa1403990:CDS
ATACTTGTTCTTTCTATAGG+TGG 0.464692 tig0022985:-41201 None:intergenic
GTAAGAACATGTCATATCTT+GGG 0.464989 tig0022985:+40909 Msa1403990:CDS
GCGTCAATTAGTATGCAATA+AGG 0.467578 tig0022985:+40644 Msa1403990:CDS
AACGCAAAGGAGCTAATTCA+TGG 0.469712 tig0022985:-40809 None:intergenic
TTCGAATGGTTAGCGTAGAT+CGG 0.473910 tig0022985:-40704 None:intergenic
GAAATATTGGGCACACAATA+CGG 0.476292 tig0022985:+42523 Msa1403990:CDS
CAAGGCATCACCTTTGCGCC+TGG 0.476669 tig0022985:+41432 Msa1403990:CDS
AATAGCCGTCATGAGGGAAA+TGG 0.477370 tig0022985:+42357 Msa1403990:CDS
TTTGAGTTACTTCCAGGGTA+AGG 0.478060 tig0022985:+41049 Msa1403990:CDS
CAAGGGAAAGAGAACTTTGA+TGG 0.478759 tig0022985:+40462 Msa1403990:CDS
CGGACGTGTCCAGAACTTGC+TGG 0.483560 tig0022985:+42543 Msa1403990:CDS
TAAATATGCTGCGAGTGATA+AGG 0.485545 tig0022985:+42401 Msa1403990:CDS
GCACTGGTATTAGACGTAAG+AGG 0.485831 tig0022985:+42814 Msa1403990:CDS
AGCAACGATGTTCGTGCTGA+TGG 0.490740 tig0022985:+40390 Msa1403990:CDS
ATGTGAAACGTGATTCTAAT+GGG 0.492055 tig0022985:+40610 Msa1403990:CDS
AAAGGACTTATATAATTTCA+CGG 0.493961 tig0022985:+40980 Msa1403990:CDS
CACTCTGTAGCAGTGTCAAA+TGG 0.499398 tig0022985:+42771 Msa1403990:CDS
CCAAAAGCGGTGATTACTGA+TGG 0.502215 tig0022985:+41365 Msa1403990:CDS
AGTGTTAGAATGTGATGAGA+GGG 0.502952 tig0022985:-43216 None:intergenic
GTATCACTATATACATCAAA+AGG 0.509968 tig0022985:-40243 None:intergenic
CAAGGGTTAAAATAAAAGAT+GGG 0.510385 tig0022985:+41012 Msa1403990:CDS
GGTCAAAAGGGTGGCCATGA+AGG 0.510809 tig0022985:+40942 Msa1403990:CDS
CCACGGGTTTGAAGTAAGAA+AGG 0.512169 tig0022985:+40584 Msa1403990:CDS
TGTGATGAGAGGGTAGTTGT+CGG 0.513549 tig0022985:-43206 None:intergenic
GATGTGAAACGTGATTCTAA+TGG 0.514927 tig0022985:+40609 Msa1403990:CDS
AGTTTGAATCTGAGTGGAAG+AGG 0.520947 tig0022985:+41546 Msa1403990:CDS
AAATGGACATGACAAGGATA+AGG 0.524930 tig0022985:+42374 Msa1403990:CDS
AAAGTCTGATTTGCAAGAGA+TGG 0.531904 tig0022985:+42148 Msa1403990:CDS
AAGTGCCCCTCGACGAAACA+TGG 0.534361 tig0022985:-42238 None:intergenic
ATTTAGTCTTCAACTTGTCA+AGG 0.535025 tig0022985:-42032 None:intergenic
ACAAATACAAGCACTAGAAA+GGG 0.535750 tig0022985:+42894 Msa1403990:CDS
AGCATTTCGATGCAAATGCC+AGG 0.536176 tig0022985:-41450 None:intergenic
GTAGTTGTCGGAGGGAATTG+TGG 0.539742 tig0022985:-43194 None:intergenic
CTCCCCTTGATCTTTAGACA+CGG 0.540361 tig0022985:-42574 None:intergenic
AAGTTGTGTTTCCAAATACA+AGG 0.544772 tig0022985:+41414 Msa1403990:CDS
AAGACAGCCATTGTGCAAGT+TGG 0.545484 tig0022985:+43096 Msa1403990:CDS
AGCTAATTCATGGTTGTGAG+AGG 0.545517 tig0022985:-40799 None:intergenic
CACTGGTATTAGACGTAAGA+GGG 0.546727 tig0022985:+42815 Msa1403990:CDS
ACTTCATGGCACAAATAATG+TGG 0.547507 tig0022985:-42101 None:intergenic
CAAAAGCGGTGATTACTGAT+GGG 0.550752 tig0022985:+41366 Msa1403990:CDS
TCGTCATTTGCCTCCCAAGA+AGG 0.555407 tig0022985:+42198 Msa1403990:CDS
GGTGCCGTGTCTAAAGATCA+AGG 0.555556 tig0022985:+42570 Msa1403990:CDS
GTTTGAATCTGAGTGGAAGA+GGG 0.557830 tig0022985:+41547 Msa1403990:CDS
CAGTGTTAGAATGTGATGAG+AGG 0.563750 tig0022985:-43217 None:intergenic
TTCATCATTACCTTCTTGGG+AGG 0.565482 tig0022985:-42208 None:intergenic
GTCTAAAGATCAAGGGGAGA+AGG 0.569529 tig0022985:+42578 Msa1403990:CDS
CAAGATGTTGAGAAAAGCAC+TGG 0.573269 tig0022985:+42798 Msa1403990:CDS
CCTTTGACATTCACCATCAG+TGG 0.574175 tig0022985:-42447 None:intergenic
TATTGTTTGCAAAATACCAC+GGG 0.576217 tig0022985:+40568 Msa1403990:CDS
GTGGAATTTAACCATGGTAA+TGG 0.576772 tig0022985:+40426 Msa1403990:CDS
GCACAAATAATGTGGGAACA+TGG 0.578248 tig0022985:-42093 None:intergenic
GATGCAAATGCCAGGCGCAA+AGG 0.578385 tig0022985:-41442 None:intergenic
CACTGAACAAGATGAAGATG+AGG 0.580349 tig0022985:+41945 Msa1403990:CDS
TGTGACAGATGATGATATAA+GGG 0.581249 tig0022985:+40503 Msa1403990:CDS
AAATGACCATGTTTCGTCGA+GGG 0.581274 tig0022985:+42232 Msa1403990:CDS
GCTAATTCATGGTTGTGAGA+GGG 0.581523 tig0022985:-40798 None:intergenic
TATCAGTATCAGCCTTACCC+TGG 0.582368 tig0022985:-41061 None:intergenic
TCAATTAGTATGCAATAAGG+AGG 0.584633 tig0022985:+40647 Msa1403990:CDS
AATGACCATGTTTCGTCGAG+GGG 0.585541 tig0022985:+42233 Msa1403990:CDS
GCAAGTTGGAACCATAATGT+TGG 0.585606 tig0022985:+43110 Msa1403990:CDS
TAAGATAAATAGCCGTCATG+AGG 0.585792 tig0022985:+42350 Msa1403990:CDS
AGGGTGGCCATGAAGGACTT+GGG 0.586883 tig0022985:+40949 Msa1403990:CDS
GAAGCTTCAAAGATATTCAC+CGG 0.587720 tig0022985:+41868 Msa1403990:CDS
AAGATAAATAGCCGTCATGA+GGG 0.587755 tig0022985:+42351 Msa1403990:CDS
CTATTGTTTGCAAAATACCA+CGG 0.588377 tig0022985:+40567 Msa1403990:CDS
ATGAGAGGGTAGTTGTCGGA+GGG 0.591320 tig0022985:-43202 None:intergenic
CATGTCCATTTCCCTCATGA+CGG 0.591948 tig0022985:-42362 None:intergenic
ATTTCACGGATCATCAGGCA+AGG 0.592596 tig0022985:+40994 Msa1403990:CDS
TGGAACCATAATGTTGGGTA+TGG 0.594448 tig0022985:+43116 Msa1403990:CDS
CTTCATGGCACAAATAATGT+GGG 0.594948 tig0022985:-42100 None:intergenic
GAACAAGATGAAGATGAGGA+TGG 0.597000 tig0022985:+41949 Msa1403990:CDS
TATGAGTGCGTTGAAGAATG+TGG 0.597255 tig0022985:+43368 Msa1403990:CDS
GTGCCGTGTCTAAAGATCAA+GGG 0.598632 tig0022985:+42571 Msa1403990:CDS
CAAGTTGGAACCATAATGTT+GGG 0.599464 tig0022985:+43111 Msa1403990:CDS
GTCAATGCAGTTGTCAGCAT+AGG 0.607551 tig0022985:-41832 None:intergenic
ATATAGTGATACAGATGAGG+TGG 0.607738 tig0022985:+40254 Msa1403990:CDS
GCTACTTTGAGTTACTTCCA+GGG 0.608783 tig0022985:+41044 Msa1403990:CDS
CTGAAAAGTTTGAATCTGAG+TGG 0.609008 tig0022985:+41540 Msa1403990:CDS
AAACATCGCAGTGACTATTG+TGG 0.611836 tig0022985:+43402 Msa1403990:CDS
GACACTGATAGTGATACAGA+TGG 0.614810 tig0022985:+40300 Msa1403990:CDS
GTTGATAAACAAGTTGCTAG+TGG 0.617676 tig0022985:+40870 Msa1403990:CDS
ACTATAAGGAGGCTCTAGAA+GGG 0.618361 tig0022985:+42310 Msa1403990:CDS
TGATAGTGATACAGATGGGG+TGG 0.618742 tig0022985:+40305 Msa1403990:CDS
AAGGGTTAAAATAAAAGATG+GGG 0.619179 tig0022985:+41013 Msa1403990:CDS
GATGAGAGGGTAGTTGTCGG+AGG 0.619255 tig0022985:-43203 None:intergenic
AAATGGTTGTTTCTCCATGG+TGG 0.622494 tig0022985:-41256 None:intergenic
CCACTGATGGTGAATGTCAA+AGG 0.624002 tig0022985:+42447 Msa1403990:CDS
TATGGTTCCAACTTGCACAA+TGG 0.627946 tig0022985:-43103 None:intergenic
CAATGTTTCGAATTATACAC+CGG 0.631288 tig0022985:+43259 Msa1403990:CDS
ATCAAATGCACAAAACGCAA+AGG 0.634035 tig0022985:-40822 None:intergenic
TGCCGTGTCTAAAGATCAAG+GGG 0.636132 tig0022985:+42572 Msa1403990:CDS
TTTCACGGATCATCAGGCAA+GGG 0.637022 tig0022985:+40995 Msa1403990:CDS
AAAAGCGGTGATTACTGATG+GGG 0.637407 tig0022985:+41367 Msa1403990:CDS
TTTAGTGGATATAACCACCA+TGG 0.638528 tig0022985:+41242 Msa1403990:CDS
AGAACGACATCAATCTGTGA+AGG 0.639278 tig0022985:+41676 Msa1403990:intron
CCTTTCTTACTTCAAACCCG+TGG 0.639832 tig0022985:-40584 None:intergenic
CATTGCAAACACCATTACCA+TGG 0.642035 tig0022985:-40437 None:intergenic
TATGGGGTGCCAAATAATGG+TGG 0.646881 tig0022985:+43161 Msa1403990:CDS
AATGGTGTTTGCAATGAGCA+AGG 0.648235 tig0022985:+40444 Msa1403990:CDS
AACAATAGAGACATACAAGT+GGG 0.649289 tig0022985:+41304 Msa1403990:CDS
AAAATGACCATGTTTCGTCG+AGG 0.652304 tig0022985:+42231 Msa1403990:CDS
TGAGGGAAATGGACATGACA+AGG 0.654599 tig0022985:+42368 Msa1403990:CDS
ATGGTGTTTGCAATGAGCAA+GGG 0.657603 tig0022985:+40445 Msa1403990:CDS
TCTGTAGCAGTGTCAAATGG+TGG 0.657609 tig0022985:+42774 Msa1403990:CDS
ACATAGACTATTGAATGCAG+CGG 0.661397 tig0022985:-42262 None:intergenic
ACACTGATAGTGATACAGAT+GGG 0.663559 tig0022985:+40301 Msa1403990:CDS
CGTGCTGATGGAGATGCAGA+CGG 0.664626 tig0022985:+40402 Msa1403990:CDS
AAACAATAGAGACATACAAG+TGG 0.671084 tig0022985:+41303 Msa1403990:CDS
TGCCATGAAGTATGACAACA+TGG 0.671427 tig0022985:+42113 Msa1403990:CDS
GTATGACAAACATCCAAAAG+CGG 0.671446 tig0022985:+41352 Msa1403990:CDS
TGAATGTCAAAGGTGCCCGT+AGG 0.674674 tig0022985:+42457 Msa1403990:CDS
CAATTAGTATGCAATAAGGA+GGG 0.675920 tig0022985:+40648 Msa1403990:CDS
AATTATGCAAGAAATCCACT+AGG 0.678875 tig0022985:-41741 None:intergenic
CATTTGACACTGCTACAGAG+TGG 0.682675 tig0022985:-42770 None:intergenic
TGTTGCGAATGATCCACTGA+TGG 0.687875 tig0022985:+42434 Msa1403990:CDS
GACGGTGTGGAATTTAACCA+TGG 0.688761 tig0022985:+40420 Msa1403990:CDS
GAGCGCAAGTGACTATAAGG+AGG 0.692103 tig0022985:+42299 Msa1403990:CDS
TGTATATAGTGATACAGATG+AGG 0.703043 tig0022985:+40251 Msa1403990:CDS
TGTAGACGCTTTGAACGCAG+AGG 0.705116 tig0022985:+42066 Msa1403990:CDS
GCTAGTGGTCTACATTCACA+AGG 0.709355 tig0022985:+40885 Msa1403990:CDS
TGATGGAGATGCAGACGGTG+TGG 0.715462 tig0022985:+40407 Msa1403990:CDS
CACTGATAGTGATACAGATG+GGG 0.724418 tig0022985:+40302 Msa1403990:CDS
GGATATGGCATTCAACACAG+AGG 0.760715 tig0022985:+40524 Msa1403990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAATTGTATATGATATTT+TGG + tig0022985:42699-42718 Msa1403990:intron 15.0%
!!! AATTATTTTAATATGCACTA+TGG + tig0022985:43143-43162 Msa1403990:CDS 15.0%
!!! ATTATTTTAATATGCACTAT+GGG + tig0022985:43144-43163 Msa1403990:CDS 15.0%
!! GATGAAAAAAATAAGAAGAA+TGG + tig0022985:40678-40697 Msa1403990:CDS 20.0%
!! AAAGGACTTATATAATTTCA+CGG + tig0022985:40980-40999 Msa1403990:CDS 20.0%
!! AAAGTTTAAAGATGTCAAAA+AGG + tig0022985:41894-41913 Msa1403990:CDS 20.0%
!!! ATTTTCAAGGTTAATGTATT+TGG + tig0022985:41982-42001 Msa1403990:CDS 20.0%
!! TGTTCTAATTGTAGAAATAT+TGG + tig0022985:42510-42529 Msa1403990:CDS 20.0%
!! GTTCTAATTGTAGAAATATT+GGG + tig0022985:42511-42530 Msa1403990:CDS 20.0%
!!! TTATTTTAATATGCACTATG+GGG + tig0022985:43145-43164 Msa1403990:CDS 20.0%
!!! CTCATAAACTGTTTTAATAT+AGG - tig0022985:43354-43373 None:intergenic 20.0%
! GTATCACTATATACATCAAA+AGG - tig0022985:40246-40265 None:intergenic 25.0%
! CAAGGGTTAAAATAAAAGAT+GGG + tig0022985:41012-41031 Msa1403990:CDS 25.0%
! AAGGGTTAAAATAAAAGATG+GGG + tig0022985:41013-41032 Msa1403990:CDS 25.0%
! ATATCCACTAAAAATGACAA+GGG - tig0022985:41234-41253 None:intergenic 25.0%
! TATATCCACTAAAAATGACA+AGG - tig0022985:41235-41254 None:intergenic 25.0%
! AATTAAAGCACAAGCAAAAA+TGG - tig0022985:41276-41295 None:intergenic 25.0%
!!! GGTTCTAAATTTGTTTTCAA+AGG + tig0022985:41325-41344 Msa1403990:CDS 25.0%
!! GACATCTTTAAACTTTTTAC+CGG - tig0022985:41890-41909 None:intergenic 25.0%
!! CAAAAAAGTTGTAGCTTTTT+CGG + tig0022985:42005-42024 Msa1403990:CDS 25.0%
!! TTTTTCATCATTACCTTCTT+GGG - tig0022985:42214-42233 None:intergenic 25.0%
!!! TTTTTTCATCATTACCTTCT+TGG - tig0022985:42215-42234 None:intergenic 25.0%
! GATTCATTATTAGACTCAAT+AGG - tig0022985:42609-42628 None:intergenic 25.0%
!! TCAATGTTGATTGTGATATT+TGG - tig0022985:42936-42955 None:intergenic 25.0%
! CAGCAAATATACTATAACAA+AGG - tig0022985:42969-42988 None:intergenic 25.0%
!!! TTGTTTTGATTGTTGTAGAA+TGG + tig0022985:43032-43051 Msa1403990:intron 25.0%
! TAAACAATCAAAATACTCAC+CGG - tig0022985:43281-43300 None:intergenic 25.0%
TGTATATAGTGATACAGATG+AGG + tig0022985:40251-40270 Msa1403990:CDS 30.0%
ATGTGACAGATGATGATATA+AGG + tig0022985:40502-40521 Msa1403990:CDS 30.0%
TGTGACAGATGATGATATAA+GGG + tig0022985:40503-40522 Msa1403990:CDS 30.0%
AGATGATGATATAAGGGATA+TGG + tig0022985:40509-40528 Msa1403990:CDS 30.0%
CTATTGTTTGCAAAATACCA+CGG + tig0022985:40567-40586 Msa1403990:CDS 30.0%
TATTGTTTGCAAAATACCAC+GGG + tig0022985:40568-40587 Msa1403990:CDS 30.0%
ATGTGAAACGTGATTCTAAT+GGG + tig0022985:40610-40629 Msa1403990:CDS 30.0%
TCAATTAGTATGCAATAAGG+AGG + tig0022985:40647-40666 Msa1403990:CDS 30.0%
CAATTAGTATGCAATAAGGA+GGG + tig0022985:40648-40667 Msa1403990:CDS 30.0%
TATCAACTTCACTCAATTTG+CGG - tig0022985:40857-40876 None:intergenic 30.0%
TGTAAGAACATGTCATATCT+TGG + tig0022985:40908-40927 Msa1403990:CDS 30.0%
GTAAGAACATGTCATATCTT+GGG + tig0022985:40909-40928 Msa1403990:CDS 30.0%
!!! TCATATCTTGGGTTTTTTGA+TGG + tig0022985:40920-40939 Msa1403990:CDS 30.0%
!!! CATATCTTGGGTTTTTTGAT+GGG + tig0022985:40921-40940 Msa1403990:CDS 30.0%
AGGACTTGGGTTTATAAAAA+AGG + tig0022985:40962-40981 Msa1403990:CDS 30.0%
ATATAATTTCACGGATCATC+AGG + tig0022985:40989-41008 Msa1403990:CDS 30.0%
GCAAGGGTTAAAATAAAAGA+TGG + tig0022985:41011-41030 Msa1403990:CDS 30.0%
GAGTTTACATTTACAGATGA+TGG + tig0022985:41098-41117 Msa1403990:CDS 30.0%
!!! ACGCCTAGAAAACATTTTTT+GGG + tig0022985:41121-41140 Msa1403990:CDS 30.0%
ATACTTGTTCTTTCTATAGG+TGG - tig0022985:41204-41223 None:intergenic 30.0%
ACCTATAGAAAGAACAAGTA+TGG + tig0022985:41203-41222 Msa1403990:CDS 30.0%
TCCATACTTGTTCTTTCTAT+AGG - tig0022985:41207-41226 None:intergenic 30.0%
TATCCACTAAAAATGACAAG+GGG - tig0022985:41233-41252 None:intergenic 30.0%
AAACAATAGAGACATACAAG+TGG + tig0022985:41303-41322 Msa1403990:CDS 30.0%
AACAATAGAGACATACAAGT+GGG + tig0022985:41304-41323 Msa1403990:CDS 30.0%
! TTTTGGATGTTTGTCATACA+TGG - tig0022985:41351-41370 None:intergenic 30.0%
AAGTTGTGTTTCCAAATACA+AGG + tig0022985:41414-41433 Msa1403990:CDS 30.0%
!! ATTTTGACCTATCAAACAAC+AGG + tig0022985:41579-41598 Msa1403990:CDS 30.0%
ATTATCAGTTGAAGAGAATG+TGG + tig0022985:41614-41633 Msa1403990:intron 30.0%
TTATCAGTTGAAGAGAATGT+GGG + tig0022985:41615-41634 Msa1403990:intron 30.0%
TTCTAACACCACACAAAAAA+TGG - tig0022985:41660-41679 None:intergenic 30.0%
AATTATGCAAGAAATCCACT+AGG - tig0022985:41744-41763 None:intergenic 30.0%
!!! TGGAAACATTGTCATTTTCA+AGG + tig0022985:41969-41988 Msa1403990:CDS 30.0%
! ATTTAGTCTTCAACTTGTCA+AGG - tig0022985:42035-42054 None:intergenic 30.0%
ATCATTCGCAACAAATTTGT+TGG - tig0022985:42427-42446 None:intergenic 30.0%
AACAAATACAAGCACTAGAA+AGG + tig0022985:42893-42912 Msa1403990:CDS 30.0%
ACAAATACAAGCACTAGAAA+GGG + tig0022985:42894-42913 Msa1403990:CDS 30.0%
AAAACTGATCCACCATTATT+TGG - tig0022985:43173-43192 None:intergenic 30.0%
CAATGTTTCGAATTATACAC+CGG + tig0022985:43259-43278 Msa1403990:CDS 30.0%
ATATAGTGATACAGATGAGG+TGG + tig0022985:40254-40273 Msa1403990:CDS 35.0%
! ACACTGATAGTGATACAGAT+GGG + tig0022985:40301-40320 Msa1403990:CDS 35.0%
GTGGAATTTAACCATGGTAA+TGG + tig0022985:40426-40445 Msa1403990:CDS 35.0%
GATGTGAAACGTGATTCTAA+TGG + tig0022985:40609-40628 Msa1403990:CDS 35.0%
GCGTCAATTAGTATGCAATA+AGG + tig0022985:40644-40663 Msa1403990:CDS 35.0%
ATCAAATGCACAAAACGCAA+AGG - tig0022985:40825-40844 None:intergenic 35.0%
TCACTCAATTTGCGGTAATT+AGG - tig0022985:40849-40868 None:intergenic 35.0%
! GTTGATAAACAAGTTGCTAG+TGG + tig0022985:40870-40889 Msa1403990:CDS 35.0%
!!! GGTTTTTTGATGGGTCAAAA+GGG + tig0022985:40930-40949 Msa1403990:CDS 35.0%
TTATAAACCCAAGTCCTTCA+TGG - tig0022985:40959-40978 None:intergenic 35.0%
!!! GACGCCTAGAAAACATTTTT+TGG + tig0022985:41120-41139 Msa1403990:CDS 35.0%
! CTGCCCAAAAAATGTTTTCT+AGG - tig0022985:41127-41146 None:intergenic 35.0%
! AGGTTTGACTATGAGTGTTT+TGG + tig0022985:41158-41177 Msa1403990:CDS 35.0%
!!! AAACCCCTTGTCATTTTTAG+TGG + tig0022985:41227-41246 Msa1403990:CDS 35.0%
! TTTAGTGGATATAACCACCA+TGG + tig0022985:41242-41261 Msa1403990:CDS 35.0%
!! CAAAAATGGTTGTTTCTCCA+TGG - tig0022985:41262-41281 None:intergenic 35.0%
GTATGACAAACATCCAAAAG+CGG + tig0022985:41352-41371 Msa1403990:CDS 35.0%
!!! TCAAACTTTTCAGGTGTACA+AGG - tig0022985:41533-41552 None:intergenic 35.0%
! CACTCAGATTCAAACTTTTC+AGG - tig0022985:41542-41561 None:intergenic 35.0%
CTGAAAAGTTTGAATCTGAG+TGG + tig0022985:41540-41559 Msa1403990:CDS 35.0%
GAAGCTTCAAAGATATTCAC+CGG + tig0022985:41868-41887 Msa1403990:CDS 35.0%
CTTCATGGCACAAATAATGT+GGG - tig0022985:42103-42122 None:intergenic 35.0%
ACTTCATGGCACAAATAATG+TGG - tig0022985:42104-42123 None:intergenic 35.0%
ATCCATGTTGTCATACTTCA+TGG - tig0022985:42118-42137 None:intergenic 35.0%
! AAAGTCTGATTTGCAAGAGA+TGG + tig0022985:42148-42167 Msa1403990:CDS 35.0%
ACATAGACTATTGAATGCAG+CGG - tig0022985:42265-42284 None:intergenic 35.0%
TAAGATAAATAGCCGTCATG+AGG + tig0022985:42350-42369 Msa1403990:CDS 35.0%
AAGATAAATAGCCGTCATGA+GGG + tig0022985:42351-42370 Msa1403990:CDS 35.0%
AAATGGACATGACAAGGATA+AGG + tig0022985:42374-42393 Msa1403990:CDS 35.0%
TAAATATGCTGCGAGTGATA+AGG + tig0022985:42401-42420 Msa1403990:CDS 35.0%
!!! TGTTGACTTTTTACTCCTAC+GGG - tig0022985:42475-42494 None:intergenic 35.0%
!!! GTGTTGACTTTTTACTCCTA+CGG - tig0022985:42476-42495 None:intergenic 35.0%
GAAATATTGGGCACACAATA+CGG + tig0022985:42523-42542 Msa1403990:CDS 35.0%
TATCATTACTCATAGACAGC+TGG - tig0022985:42737-42756 None:intergenic 35.0%
!! TGCTGAAAATTGTGTTGCTT+TGG + tig0022985:42984-43003 Msa1403990:intron 35.0%
! TTTTTCATGTCCAAAGTCAC+AGG - tig0022985:43063-43082 None:intergenic 35.0%
! CAAGTTGGAACCATAATGTT+GGG + tig0022985:43111-43130 Msa1403990:CDS 35.0%
TAACACCATACCCAACATTA+TGG - tig0022985:43124-43143 None:intergenic 35.0%
AGTGTTAGAATGTGATGAGA+GGG - tig0022985:43219-43238 None:intergenic 35.0%
! GACACTGATAGTGATACAGA+TGG + tig0022985:40300-40319 Msa1403990:CDS 40.0%
! CACTGATAGTGATACAGATG+GGG + tig0022985:40302-40321 Msa1403990:CDS 40.0%
CATTGCAAACACCATTACCA+TGG - tig0022985:40440-40459 None:intergenic 40.0%
AATGGTGTTTGCAATGAGCA+AGG + tig0022985:40444-40463 Msa1403990:CDS 40.0%
ATGGTGTTTGCAATGAGCAA+GGG + tig0022985:40445-40464 Msa1403990:CDS 40.0%
CAAGGGAAAGAGAACTTTGA+TGG + tig0022985:40462-40481 Msa1403990:CDS 40.0%
TTCGAATGGTTAGCGTAGAT+CGG - tig0022985:40707-40726 None:intergenic 40.0%
CGCAGAACAATTAGTTCGAA+TGG - tig0022985:40721-40740 None:intergenic 40.0%
ACGACTTTGTTCGTACGATT+TGG + tig0022985:40757-40776 Msa1403990:CDS 40.0%
GCTAATTCATGGTTGTGAGA+GGG - tig0022985:40801-40820 None:intergenic 40.0%
AGCTAATTCATGGTTGTGAG+AGG - tig0022985:40802-40821 None:intergenic 40.0%
AACGCAAAGGAGCTAATTCA+TGG - tig0022985:40812-40831 None:intergenic 40.0%
!!! GGGTTTTTTGATGGGTCAAA+AGG + tig0022985:40929-40948 Msa1403990:CDS 40.0%
!! TTTTTGATGGGTCAAAAGGG+TGG + tig0022985:40933-40952 Msa1403990:CDS 40.0%
!! TGCTACTTTGAGTTACTTCC+AGG + tig0022985:41043-41062 Msa1403990:CDS 40.0%
! GCTACTTTGAGTTACTTCCA+GGG + tig0022985:41044-41063 Msa1403990:CDS 40.0%
! TTTGAGTTACTTCCAGGGTA+AGG + tig0022985:41049-41068 Msa1403990:CDS 40.0%
TTTGGGCAGATTCTACTAGT+AGG + tig0022985:41138-41157 Msa1403990:CDS 40.0%
!! AAATGGTTGTTTCTCCATGG+TGG - tig0022985:41259-41278 None:intergenic 40.0%
CAAAAGCGGTGATTACTGAT+GGG + tig0022985:41366-41385 Msa1403990:CDS 40.0%
AAAAGCGGTGATTACTGATG+GGG + tig0022985:41367-41386 Msa1403990:CDS 40.0%
CAAAGGTGATGCCTTGTATT+TGG - tig0022985:41428-41447 None:intergenic 40.0%
AGTTTGAATCTGAGTGGAAG+AGG + tig0022985:41546-41565 Msa1403990:CDS 40.0%
GTTTGAATCTGAGTGGAAGA+GGG + tig0022985:41547-41566 Msa1403990:CDS 40.0%
TTGACCTATCAAACAACAGG+TGG + tig0022985:41582-41601 Msa1403990:intron 40.0%
TGACCTATCAAACAACAGGT+GGG + tig0022985:41583-41602 Msa1403990:intron 40.0%
! TTACCCACCTGTTGTTTGAT+AGG - tig0022985:41589-41608 None:intergenic 40.0%
!!! ATGCGAGACCATTTTTTGTG+TGG + tig0022985:41649-41668 Msa1403990:intron 40.0%
AGAACGACATCAATCTGTGA+AGG + tig0022985:41676-41695 Msa1403990:intron 40.0%
!!! CCACTAGGCTGTTTTTGTAT+CGG - tig0022985:41729-41748 None:intergenic 40.0%
AGATGTCAAAAAGGCGATAG+AGG + tig0022985:41903-41922 Msa1403990:CDS 40.0%
CACTGAACAAGATGAAGATG+AGG + tig0022985:41945-41964 Msa1403990:CDS 40.0%
GAACAAGATGAAGATGAGGA+TGG + tig0022985:41949-41968 Msa1403990:CDS 40.0%
GCACAAATAATGTGGGAACA+TGG - tig0022985:42096-42115 None:intergenic 40.0%
TGCCATGAAGTATGACAACA+TGG + tig0022985:42113-42132 Msa1403990:CDS 40.0%
CTCTTGCAAATCAGACTTTC+AGG - tig0022985:42147-42166 None:intergenic 40.0%
TTCATCATTACCTTCTTGGG+AGG - tig0022985:42211-42230 None:intergenic 40.0%
AAAATGACCATGTTTCGTCG+AGG + tig0022985:42231-42250 Msa1403990:CDS 40.0%
AAATGACCATGTTTCGTCGA+GGG + tig0022985:42232-42251 Msa1403990:CDS 40.0%
! TAAGAGCGCAAGTGACTATA+AGG + tig0022985:42296-42315 Msa1403990:CDS 40.0%
!! ACTATAAGGAGGCTCTAGAA+GGG + tig0022985:42310-42329 Msa1403990:CDS 40.0%
ATCACTCGCAGCATATTTAC+TGG - tig0022985:42400-42419 None:intergenic 40.0%
GGAGTAAAAAGTCAACACTG+AGG + tig0022985:42478-42497 Msa1403990:CDS 40.0%
! CAAGATGTTGAGAAAAGCAC+TGG + tig0022985:42798-42817 Msa1403990:CDS 40.0%
CACTGGTATTAGACGTAAGA+GGG + tig0022985:42815-42834 Msa1403990:CDS 40.0%
TATGGTTCCAACTTGCACAA+TGG - tig0022985:43106-43125 None:intergenic 40.0%
! GCAAGTTGGAACCATAATGT+TGG + tig0022985:43110-43129 Msa1403990:CDS 40.0%
TGGAACCATAATGTTGGGTA+TGG + tig0022985:43116-43135 Msa1403990:CDS 40.0%
CAGTGTTAGAATGTGATGAG+AGG - tig0022985:43220-43239 None:intergenic 40.0%
TATGAGTGCGTTGAAGAATG+TGG + tig0022985:43368-43387 Msa1403990:CDS 40.0%
AAACATCGCAGTGACTATTG+TGG + tig0022985:43402-43421 Msa1403990:CDS 40.0%
! TGATAGTGATACAGATGGGG+TGG + tig0022985:40305-40324 Msa1403990:CDS 45.0%
GACGGTGTGGAATTTAACCA+TGG + tig0022985:40420-40439 Msa1403990:CDS 45.0%
GGATATGGCATTCAACACAG+AGG + tig0022985:40524-40543 Msa1403990:CDS 45.0%
CCTTTCTTACTTCAAACCCG+TGG - tig0022985:40587-40606 None:intergenic 45.0%
! CCACGGGTTTGAAGTAAGAA+AGG + tig0022985:40584-40603 Msa1403990:CDS 45.0%
GCTAGTGGTCTACATTCACA+AGG + tig0022985:40885-40904 Msa1403990:CDS 45.0%
ATTTCACGGATCATCAGGCA+AGG + tig0022985:40994-41013 Msa1403990:CDS 45.0%
TTTCACGGATCATCAGGCAA+GGG + tig0022985:40995-41014 Msa1403990:CDS 45.0%
TATCAGTATCAGCCTTACCC+TGG - tig0022985:41064-41083 None:intergenic 45.0%
! CCATCAGTAATCACCGCTTT+TGG - tig0022985:41368-41387 None:intergenic 45.0%
CCAAAAGCGGTGATTACTGA+TGG + tig0022985:41365-41384 Msa1403990:CDS 45.0%
AGCATTTCGATGCAAATGCC+AGG - tig0022985:41453-41472 None:intergenic 45.0%
CCGATACAAAAACAGCCTAG+TGG + tig0022985:41726-41745 Msa1403990:CDS 45.0%
GTCAATGCAGTTGTCAGCAT+AGG - tig0022985:41835-41854 None:intergenic 45.0%
AATGACCATGTTTCGTCGAG+GGG + tig0022985:42233-42252 Msa1403990:CDS 45.0%
!! GACTATAAGGAGGCTCTAGA+AGG + tig0022985:42309-42328 Msa1403990:CDS 45.0%
AATAGCCGTCATGAGGGAAA+TGG + tig0022985:42357-42376 Msa1403990:CDS 45.0%
CATGTCCATTTCCCTCATGA+CGG - tig0022985:42365-42384 None:intergenic 45.0%
TGAGGGAAATGGACATGACA+AGG + tig0022985:42368-42387 Msa1403990:CDS 45.0%
TGTTGCGAATGATCCACTGA+TGG + tig0022985:42434-42453 Msa1403990:CDS 45.0%
CCTTTGACATTCACCATCAG+TGG - tig0022985:42450-42469 None:intergenic 45.0%
! CCACTGATGGTGAATGTCAA+AGG + tig0022985:42447-42466 Msa1403990:CDS 45.0%
!! TGTCCAGAACTTGCTGGAAT+TGG + tig0022985:42549-42568 Msa1403990:CDS 45.0%
GTGCCGTGTCTAAAGATCAA+GGG + tig0022985:42571-42590 Msa1403990:CDS 45.0%
TGCCGTGTCTAAAGATCAAG+GGG + tig0022985:42572-42591 Msa1403990:CDS 45.0%
CTCCCCTTGATCTTTAGACA+CGG - tig0022985:42577-42596 None:intergenic 45.0%
GTCTAAAGATCAAGGGGAGA+AGG + tig0022985:42578-42597 Msa1403990:CDS 45.0%
CATTTGACACTGCTACAGAG+TGG - tig0022985:42773-42792 None:intergenic 45.0%
CACTCTGTAGCAGTGTCAAA+TGG + tig0022985:42771-42790 Msa1403990:CDS 45.0%
TCTGTAGCAGTGTCAAATGG+TGG + tig0022985:42774-42793 Msa1403990:CDS 45.0%
! GCACTGGTATTAGACGTAAG+AGG + tig0022985:42814-42833 Msa1403990:CDS 45.0%
AATGGTGTGACCTGTGACTT+TGG + tig0022985:43050-43069 Msa1403990:CDS 45.0%
AAGACAGCCATTGTGCAAGT+TGG + tig0022985:43096-43115 Msa1403990:CDS 45.0%
! CACTATGGGGTGCCAAATAA+TGG + tig0022985:43158-43177 Msa1403990:CDS 45.0%
! TATGGGGTGCCAAATAATGG+TGG + tig0022985:43161-43180 Msa1403990:CDS 45.0%
TGTGATGAGAGGGTAGTTGT+CGG - tig0022985:43209-43228 None:intergenic 45.0%
TCTAACACTGCTCTGCATAC+TGG + tig0022985:43230-43249 Msa1403990:CDS 45.0%
AGCAACGATGTTCGTGCTGA+TGG + tig0022985:40390-40409 Msa1403990:CDS 50.0%
! TGTAGACGCTTTGAACGCAG+AGG + tig0022985:42066-42085 Msa1403990:CDS 50.0%
TCGTCATTTGCCTCCCAAGA+AGG + tig0022985:42198-42217 Msa1403990:CDS 50.0%
GAGCGCAAGTGACTATAAGG+AGG + tig0022985:42299-42318 Msa1403990:CDS 50.0%
!! TGAATGTCAAAGGTGCCCGT+AGG + tig0022985:42457-42476 Msa1403990:CDS 50.0%
GCACCAATTCCAGCAAGTTC+TGG - tig0022985:42555-42574 None:intergenic 50.0%
! GGTGCCGTGTCTAAAGATCA+AGG + tig0022985:42570-42589 Msa1403990:CDS 50.0%
GTAGTTGTCGGAGGGAATTG+TGG - tig0022985:43197-43216 None:intergenic 50.0%
ATGAGAGGGTAGTTGTCGGA+GGG - tig0022985:43205-43224 None:intergenic 50.0%
! CGTGCTGATGGAGATGCAGA+CGG + tig0022985:40402-40421 Msa1403990:CDS 55.0%
TGATGGAGATGCAGACGGTG+TGG + tig0022985:40407-40426 Msa1403990:CDS 55.0%
GGTCAAAAGGGTGGCCATGA+AGG + tig0022985:40942-40961 Msa1403990:CDS 55.0%
AAGGGTGGCCATGAAGGACT+TGG + tig0022985:40948-40967 Msa1403990:CDS 55.0%
AGGGTGGCCATGAAGGACTT+GGG + tig0022985:40949-40968 Msa1403990:CDS 55.0%
GATGCAAATGCCAGGCGCAA+AGG - tig0022985:41445-41464 None:intergenic 55.0%
AAGTGCCCCTCGACGAAACA+TGG - tig0022985:42241-42260 None:intergenic 55.0%
GATGAGAGGGTAGTTGTCGG+AGG - tig0022985:43206-43225 None:intergenic 55.0%
! CAAGGCATCACCTTTGCGCC+TGG + tig0022985:41432-41451 Msa1403990:CDS 60.0%
CGGACGTGTCCAGAACTTGC+TGG + tig0022985:42543-42562 Msa1403990:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0022985 gene 40216 43437 40216 ID=Msa1403990;Name=Msa1403990
tig0022985 mRNA 40216 43437 40216 ID=Msa1403990-mRNA-1;Parent=Msa1403990;Name=Msa1403990-mRNA-1;_AED=0.27;_eAED=0.29;_QI=0|0|0|0.4|1|1|5|0|957
tig0022985 exon 40216 41600 40216 ID=Msa1403990-mRNA-1:exon:19550;Parent=Msa1403990-mRNA-1
tig0022985 exon 41678 42641 41678 ID=Msa1403990-mRNA-1:exon:19551;Parent=Msa1403990-mRNA-1
tig0022985 exon 42738 42959 42738 ID=Msa1403990-mRNA-1:exon:19552;Parent=Msa1403990-mRNA-1
tig0022985 exon 43050 43280 43050 ID=Msa1403990-mRNA-1:exon:19553;Parent=Msa1403990-mRNA-1
tig0022985 exon 43366 43437 43366 ID=Msa1403990-mRNA-1:exon:19554;Parent=Msa1403990-mRNA-1
tig0022985 CDS 40216 41600 40216 ID=Msa1403990-mRNA-1:cds;Parent=Msa1403990-mRNA-1
tig0022985 CDS 41678 42641 41678 ID=Msa1403990-mRNA-1:cds;Parent=Msa1403990-mRNA-1
tig0022985 CDS 42738 42959 42738 ID=Msa1403990-mRNA-1:cds;Parent=Msa1403990-mRNA-1
tig0022985 CDS 43050 43280 43050 ID=Msa1403990-mRNA-1:cds;Parent=Msa1403990-mRNA-1
tig0022985 CDS 43366 43437 43366 ID=Msa1403990-mRNA-1:cds;Parent=Msa1403990-mRNA-1
Gene Sequence

>Msa1403990

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTATATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACACTGATAGTGATACAGATGGGGTGGAATTTAATAGTGTTAATGATGTTGACACTGATAGTGATACTGAAGATATAAAAGTCAATAGCAGCAACGATGTTCGTGCTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAGATGATGATATAAGGGATATGGCATTCAACACAGAGGATGAAGCTATAAAGTTTTATCTATTGTTTGCAAAATACCACGGGTTTGAAGTAAGAAAGGATGATGTGAAACGTGATTCTAATGGGAACATTATTATGCGTCAATTAGTATGCAATAAGGAGGGTGTTAATGATGAAAAAAATAAGAAGAATGGCATCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCGAAATTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTGTTTTCAAACCCTCTCACAACCATGAATTAGCTCCTTTGCGTTTTGTGCATTTGATGCCTAATTACCGCAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCACAAGGTGTAAGAACATGTCATATCTTGGGTTTTTTGATGGGTCAAAAGGGTGGCCATGAAGGACTTGGGTTTATAAAAAAGGACTTATATAATTTCACGGATCATCAGGCAAGGGTTAAAATAAAAGATGGGGATACTTTTGCTACTTTGAGTTACTTCCAGGGTAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCAATGTTGTTGCATTTGACACCACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCATTTTTGCTTGTGCTTTAATTTGTGATGAAACAATAGAGACATACAAGTGGGTTCTAAATTTGTTTTCAAAGGCCATGTATGACAAACATCCAAAAGCGGTGATTACTGATGGGGATAAATCAATGAGAAAAGCTATCAAAGTTGTGTTTCCAAATACAAGGCATCACCTTTGCGCCTGGCATTTGCATCGAAATGCTGTTCAACATGTGAAGAATTCAAAATTTTTAGAAGAGTTCAAGTCACTGATGTATTCTCCTTGTACACCTGAAAAGTTTGAATCTGAGTGGAAGAGGGTTGTTGAAAATTTTGACCTATCAAACAACAGAACGACATCAATCTGTGAAGGAGTGAATTCATTTATCAAGAAGTATGTCCGATACAAAAACAGCCTAGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGAATACAGACATAATGAATTATTGTCTGATTTCAAGTCGTTCTATTATCATCCTATGCTGACAACTGCATTGACTACTTTTGAGTCTGAAGCTTCAAAGATATTCACCGGTAAAAAGTTTAAAGATGTCAAAAAGGCGATAGAGGATGTTGTTGCATTATCAGTCACTGAACAAGATGAAGATGAGGATGGAAACATTGTCATTTTCAAGGTTAATGTATTTGGCAAAAAAGTTGTAGCTTTTTCGGTAAACCTTGACAAGTTGAAGACTAAATTTTTATGTGATTGTAGACGCTTTGAACGCAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTATGACAACATGGATGTGTTTCCTGAAAGTCTGATTTGCAAGAGATGGACAAAGACTGCAAAGAGTGATCACATCTCGTCATTTGCCTCCCAAGAAGGTAATGATGAAAAAATGACCATGTTTCGTCGAGGGGCACTTGCCGCTGCATTCAATAGTCTATGTGATGTTTCGTGTAAGAGCGCAAGTGACTATAAGGAGGCTCTAGAAGGGATTTATAGTTTGTGTAATAAGATAAATAGCCGTCATGAGGGAAATGGACATGACAAGGATAAGGCCAGTAAATATGCTGCGAGTGATAAGGCCAACAAATTTGTTGCGAATGATCCACTGATGGTGAATGTCAAAGGTGCCCGTAGGAGTAAAAAGTCAACACTGAGGACAAGATGTTGTTCTAATTGTAGAAATATTGGGCACACAATACGGACGTGTCCAGAACTTGCTGGAATTGGTGCCGTGTCTAAAGATCAAGGGGAGAAGGCTTCACCTATTGAGTCTAATAATGAATCAAAAAGTTTAAGTCTGTCTATGAGTAATGATATGAATGATGACATCCACTCTGTAGCAGTGTCAAATGGTGGACAAGATGTTGAGAAAAGCACTGGTATTAGACGTAAGAGGGAATGTGACAATGTTGCATTTTCAACACAAGACTCTGTCAACAAAAGAAAAACAAAAACAAATACAAGCACTAGAAAGGGTGATGCTTGTGTGACTCCAAATATCACAATCAACATTGATAATAATGGTGTGACCTGTGACTTTGGACATGAAAAATCTACTCTCAAACAAGACAGCCATTGTGCAAGTTGGAACCATAATGTTGGGTATGGTGTTAATTATTTTAATATGCACTATGGGGTGCCAAATAATGGTGGATCAGTTTTTCCACAATTCCCTCCGACAACTACCCTCTCATCACATTCTAACACTGCTCTGCATACTGGAACACACAATGTTTCGAATTATACACCGTTTATGAGTGCGTTGAAGAATGTGGAGCTGTTAGCAAAACATCGCAGTGACTATTGTGGACCAGAACATTGA
Protein sequence

>Msa1403990

MSTYSEATLPFDVYSDTDEVEFNSVNDIDTDSDTDGVEFNSVNDVDTDSDTEDIKVNSSNDVRADGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTDDDIRDMAFNTEDEAIKFYLLFAKYHGFEVRKDDVKRDSNGNIIMRQLVCNKEGVNDEKNKKNGIRSTLTIRTNCSAKFRVVYDFVRTIWRVSVFKPSHNHELAPLRFVHLMPNYRKLSEVDKQVASGLHSQGVRTCHILGFLMGQKGGHEGLGFIKKDLYNFTDHQARVKIKDGDTFATLSYFQGKADTDTSFFSEFTFTDDGRLENIFWADSTSRFDYECFGNVVAFDTTYRKNKYGKPLVIFSGYNHHGETTIFACALICDETIETYKWVLNLFSKAMYDKHPKAVITDGDKSMRKAIKVVFPNTRHHLCAWHLHRNAVQHVKNSKFLEEFKSLMYSPCTPEKFESEWKRVVENFDLSNNRTTSICEGVNSFIKKYVRYKNSLVDFLHNFERALKEYRHNELLSDFKSFYYHPMLTTALTTFESEASKIFTGKKFKDVKKAIEDVVALSVTEQDEDEDGNIVIFKVNVFGKKVVAFSVNLDKLKTKFLCDCRRFERRGLPCSHIICAMKYDNMDVFPESLICKRWTKTAKSDHISSFASQEGNDEKMTMFRRGALAAAFNSLCDVSCKSASDYKEALEGIYSLCNKINSRHEGNGHDKDKASKYAASDKANKFVANDPLMVNVKGARRSKKSTLRTRCCSNCRNIGHTIRTCPELAGIGAVSKDQGEKASPIESNNESKSLSLSMSNDMNDDIHSVAVSNGGQDVEKSTGIRRKRECDNVAFSTQDSVNKRKTKTNTSTRKGDACVTPNITINIDNNGVTCDFGHEKSTLKQDSHCASWNHNVGYGVNYFNMHYGVPNNGGSVFPQFPPTTTLSSHSNTALHTGTHNVSNYTPFMSALKNVELLAKHRSDYCGPEH*