Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405540 | XP_024632337.1 | 89.783 | 646 | 57 | 6 | 6 | 646 | 16 | 657 | 0.0 | 1102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405540 | sp|Q3ECY6|SDG41_ARATH | 36.916 | 642 | 310 | 17 | 3 | 634 | 1 | 557 | 1.05e-110 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405540 | G7IQD7 | 89.645 | 647 | 57 | 7 | 6 | 646 | 16 | 658 | 0.0 | 1098 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1405540 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405540 | MtrunA17_Chr2g0302141 | 89.645 | 647 | 57 | 7 | 6 | 646 | 16 | 658 | 0.0 | 1098 |
| Msa1405540 | MtrunA17_Chr3g0108341 | 88.172 | 93 | 10 | 1 | 136 | 228 | 1 | 92 | 2.07e-49 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405540 | AT1G43245.1 | 36.916 | 642 | 310 | 17 | 3 | 634 | 1 | 557 | 1.06e-111 | 347 |
| Msa1405540 | AT1G43245.2 | 37.986 | 566 | 283 | 15 | 3 | 559 | 1 | 507 | 2.67e-102 | 323 |
Find 146 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACTCCTCACAATCAATTT+TGG | 0.137975 | tig0023139:+87049 | None:intergenic |
| CTTAACATATGGAGGTTTAT+TGG | 0.183713 | tig0023139:-84300 | Msa1405540:CDS |
| CAACGACGGTGCAGCGATTC+TGG | 0.215687 | tig0023139:-88260 | Msa1405540:CDS |
| GTCTATGAAGAAATTGTAAT+TGG | 0.236781 | tig0023139:+85153 | None:intergenic |
| CGCGCTGGTGATTTATTATC+TGG | 0.254941 | tig0023139:-84914 | Msa1405540:CDS |
| ATGCTGTAAGTGGTCATTAA+TGG | 0.271705 | tig0023139:-84642 | Msa1405540:CDS |
| TTTAGAGCCTGTATGTTAAA+TGG | 0.281071 | tig0023139:-84614 | Msa1405540:CDS |
| CCATTCCCATTTGGTTTCTC+AGG | 0.299180 | tig0023139:-84258 | Msa1405540:CDS |
| GGTTGGTGTGGAGGAGGAGG+CGG | 0.307142 | tig0023139:+88422 | None:intergenic |
| CTTACTCCATCCTGAACTTC+TGG | 0.315654 | tig0023139:+84718 | None:intergenic |
| AGGGAAGGTTGGTGTGGAGG+AGG | 0.323233 | tig0023139:+88416 | None:intergenic |
| GAATGGAACAATGCGAAGTT+TGG | 0.328300 | tig0023139:+88054 | None:intergenic |
| TGGTGTGGAGGAGGAGGCGG+AGG | 0.330806 | tig0023139:+88425 | None:intergenic |
| AGGAGGTGGAGGAGGAAGGG+AGG | 0.331281 | tig0023139:+88464 | None:intergenic |
| GAGAATAGATAGCAAGCATT+AGG | 0.337383 | tig0023139:+88112 | None:intergenic |
| GAAGGTTGGTGTGGAGGAGG+AGG | 0.338435 | tig0023139:+88419 | None:intergenic |
| TAAGTTTCTTAATGTTGATT+TGG | 0.342753 | tig0023139:-84699 | Msa1405540:CDS |
| TTAACTCTTACCAGAAGTTC+AGG | 0.346116 | tig0023139:-84728 | Msa1405540:CDS |
| TTATTGGCTTATATATGTTA+TGG | 0.352031 | tig0023139:-84284 | Msa1405540:CDS |
| TGCAAGGACCCTATCAATTT+CGG | 0.353888 | tig0023139:-84476 | Msa1405540:CDS |
| AGAATAGATAGCAAGCATTA+GGG | 0.355274 | tig0023139:+88113 | None:intergenic |
| GGGAGGGAAGGTTGGTGTGG+AGG | 0.356869 | tig0023139:+88413 | None:intergenic |
| GCGGAGTAGGGAGGAGGTGG+AGG | 0.357864 | tig0023139:+88453 | None:intergenic |
| GGCGGAGGGCGGTGCGGAGT+AGG | 0.359979 | tig0023139:+88440 | None:intergenic |
| ATTACCCAGCCGAAATTGAT+AGG | 0.361279 | tig0023139:+84467 | None:intergenic |
| AATGGGAGGTGGAGCAGTGA+AGG | 0.372109 | tig0023139:+88518 | None:intergenic |
| GGGGATTGAGGAATGGGAGG+TGG | 0.372774 | tig0023139:+88507 | None:intergenic |
| GTTCTTTGTGGAGATTCATC+TGG | 0.374282 | tig0023139:-85184 | Msa1405540:CDS |
| GAGTAGGGAGGAGGTGGAGG+AGG | 0.379831 | tig0023139:+88456 | None:intergenic |
| AGGGAGGAGGTGGAGGAGGA+AGG | 0.382927 | tig0023139:+88460 | None:intergenic |
| CGGGCTCATGATATCAAAAC+TGG | 0.384552 | tig0023139:-84419 | Msa1405540:CDS |
| GGTAGTGTTCGGCGGAGGAG+AGG | 0.389140 | tig0023139:+88485 | None:intergenic |
| GGGAGGAGGTGGAGGAGGAA+GGG | 0.390776 | tig0023139:+88461 | None:intergenic |
| CAGACATTACTCGTAATGTT+TGG | 0.393354 | tig0023139:-84535 | Msa1405540:CDS |
| TTATGGTCCCCATTCCCATT+TGG | 0.394634 | tig0023139:-84267 | Msa1405540:CDS |
| TGCTGTAAGTGGTCATTAAT+GGG | 0.404950 | tig0023139:-84641 | Msa1405540:CDS |
| TTGGAATTGGGAATGGGAGG+TGG | 0.411307 | tig0023139:+88565 | None:intergenic |
| GTGATTGAGGCGAGTGGAAG+GGG | 0.412177 | tig0023139:+88393 | None:intergenic |
| GTGGAGGAGGAGGCGGAGGG+CGG | 0.414326 | tig0023139:+88429 | None:intergenic |
| TGAAGGGAGCAGTAGTGAAT+GGG | 0.415875 | tig0023139:+88535 | None:intergenic |
| CAGGAAATATCTGTTCTTTG+TGG | 0.422651 | tig0023139:-85196 | Msa1405540:CDS |
| TTTGAACCTGAGAAACCAAA+TGG | 0.430256 | tig0023139:+84252 | None:intergenic |
| GGCGGTGCGGAGTAGGGAGG+AGG | 0.433578 | tig0023139:+88447 | None:intergenic |
| CTGAGAAACCAAATGGGAAT+GGG | 0.436237 | tig0023139:+84259 | None:intergenic |
| CATGAATCTGTGAATAGAAC+TGG | 0.437992 | tig0023139:-84383 | Msa1405540:CDS |
| GTGAAGGGAGCAGTAGTGAA+TGG | 0.439390 | tig0023139:+88534 | None:intergenic |
| GGAGGAGGCGGAGGGCGGTG+CGG | 0.441836 | tig0023139:+88434 | None:intergenic |
| GGTGTACATTGCTTAACATA+TGG | 0.441977 | tig0023139:-84311 | Msa1405540:CDS |
| GGTGCGGAGTAGGGAGGAGG+TGG | 0.443121 | tig0023139:+88450 | None:intergenic |
| GTAGTGTTCGGCGGAGGAGA+GGG | 0.444730 | tig0023139:+88486 | None:intergenic |
| AAGGGGAGGGAAGGTTGGTG+TGG | 0.453799 | tig0023139:+88410 | None:intergenic |
| AGTGGAAGGGGAGGGAAGGT+TGG | 0.454567 | tig0023139:+88405 | None:intergenic |
| GGATTATTGGAATTGGGAAT+GGG | 0.460766 | tig0023139:+88559 | None:intergenic |
| AAGTGATTGAGGCGAGTGGA+AGG | 0.461563 | tig0023139:+88391 | None:intergenic |
| GGAGGAAGGGAGGTAGTGTT+CGG | 0.468444 | tig0023139:+88474 | None:intergenic |
| GCGGAGGGCGGTGCGGAGTA+GGG | 0.471674 | tig0023139:+88441 | None:intergenic |
| GATTTGACCATTTAACATAC+AGG | 0.472029 | tig0023139:+84607 | None:intergenic |
| CAGAGAAGAAGAAGTGGAGA+AGG | 0.474927 | tig0023139:+88090 | None:intergenic |
| TATAACATCTTCAATGGAAT+CGG | 0.475841 | tig0023139:+85111 | None:intergenic |
| GAACGAGACAATCGGAACTA+TGG | 0.481166 | tig0023139:-85467 | Msa1405540:CDS |
| CTCTGATATAACATCTTCAA+TGG | 0.482382 | tig0023139:+85105 | None:intergenic |
| AGTATCAAGAAAATTAGAAA+GGG | 0.482563 | tig0023139:-87031 | Msa1405540:CDS |
| GAGAAAGAGAGTGGAGTGAG+TGG | 0.483450 | tig0023139:+88643 | None:intergenic |
| GAGGGCGGTGCGGAGTAGGG+AGG | 0.485360 | tig0023139:+88444 | None:intergenic |
| AGTGATTGAGGCGAGTGGAA+GGG | 0.490478 | tig0023139:+88392 | None:intergenic |
| AGGACCCTATCAATTTCGGC+TGG | 0.493252 | tig0023139:-84472 | Msa1405540:CDS |
| GAGTATCAAGAAAATTAGAA+AGG | 0.498335 | tig0023139:-87032 | Msa1405540:CDS |
| ATTGAGGCGAGTGGAAGGGG+AGG | 0.499805 | tig0023139:+88396 | None:intergenic |
| GGGATTATTGGAATTGGGAA+TGG | 0.500108 | tig0023139:+88558 | None:intergenic |
| AGGGAGGTAGTGTTCGGCGG+AGG | 0.500401 | tig0023139:+88480 | None:intergenic |
| ATTTAGAGAGAGATGGTGAA+GGG | 0.500523 | tig0023139:+84970 | None:intergenic |
| AGAAAGCAGAGAAGAAGAAG+TGG | 0.500998 | tig0023139:+88084 | None:intergenic |
| GGCGAGTGGAAGGGGAGGGA+AGG | 0.501061 | tig0023139:+88401 | None:intergenic |
| TCATATCAAAAGCTTTCGAT+TGG | 0.502770 | tig0023139:+84870 | None:intergenic |
| GATAACGAAGGATGCGCACT+CGG | 0.503690 | tig0023139:-88184 | Msa1405540:CDS |
| TTGTGGAGAGAGAAAGAGAG+TGG | 0.504148 | tig0023139:+88634 | None:intergenic |
| CAAACTCTCATCTTTGACAA+TGG | 0.506448 | tig0023139:-88719 | Msa1405540:exon |
| AATTTAGAGAGAGATGGTGA+AGG | 0.510703 | tig0023139:+84969 | None:intergenic |
| TGTAAGAAGCAAGGTTTGAA+AGG | 0.511318 | tig0023139:+84675 | None:intergenic |
| CCGCCTCGGCGCACTTACCA+TGG | 0.513610 | tig0023139:-88314 | Msa1405540:CDS |
| CCTGAGAAACCAAATGGGAA+TGG | 0.514430 | tig0023139:+84258 | None:intergenic |
| CTCATCTTTGACAATGGAGA+TGG | 0.514518 | tig0023139:-88713 | Msa1405540:exon |
| CTCTCTGCCCTTCACATACG+TGG | 0.515200 | tig0023139:-85406 | Msa1405540:CDS |
| GGTGTAGACGAGCAGCTAGA+AGG | 0.527981 | tig0023139:-85022 | Msa1405540:CDS |
| CGGAACTATGGTCTAAGTAT+CGG | 0.529829 | tig0023139:-85455 | Msa1405540:CDS |
| AGGAGCAGTGAGTGTGGAGA+TGG | 0.532014 | tig0023139:+88608 | None:intergenic |
| AACATGAGGAGCAGTGAGTG+TGG | 0.535051 | tig0023139:+88602 | None:intergenic |
| TTATTGGAATTGGGAATGGG+AGG | 0.535366 | tig0023139:+88562 | None:intergenic |
| GGTAAGTGCGCCGAGGCGGA+CGG | 0.536704 | tig0023139:+88318 | None:intergenic |
| CAAAATTTAAATGCTGTAAG+TGG | 0.537765 | tig0023139:-84652 | Msa1405540:CDS |
| TTTGAGATGTTAGTAAATGA+CGG | 0.540262 | tig0023139:+88359 | None:intergenic |
| ATATCAGAGTACCTTTCAGT+TGG | 0.546568 | tig0023139:-85091 | Msa1405540:CDS |
| ATGGGAGGTGGAGCAGTGAA+GGG | 0.546682 | tig0023139:+88519 | None:intergenic |
| AAGGGAGCAGTAGTGAATGG+GGG | 0.551100 | tig0023139:+88537 | None:intergenic |
| GTGGCGGAAACCGTCCGCCT+CGG | 0.552194 | tig0023139:-88328 | Msa1405540:CDS |
| AGTGCTAACCAACGCGGTGG+AGG | 0.554618 | tig0023139:-88212 | Msa1405540:CDS |
| ATAACGAAGGATGCGCACTC+GGG | 0.558272 | tig0023139:-88183 | Msa1405540:CDS |
| TTGAGGCGAGTGGAAGGGGA+GGG | 0.560041 | tig0023139:+88397 | None:intergenic |
| GAGTGTGGAGATGGGTGTTG+TGG | 0.563240 | tig0023139:+88617 | None:intergenic |
| GTATCAAGAAAATTAGAAAG+GGG | 0.565823 | tig0023139:-87030 | Msa1405540:CDS |
| AGTGTTCGGCGGAGGAGAGG+GGG | 0.566033 | tig0023139:+88488 | None:intergenic |
| GGAGCAGTGAGTGTGGAGAT+GGG | 0.571832 | tig0023139:+88609 | None:intergenic |
| CAAAGCGGTTGCAGCAACGA+CGG | 0.574084 | tig0023139:-88274 | Msa1405540:CDS |
| TTTAGAGAGAGATGGTGAAG+GGG | 0.574560 | tig0023139:+84971 | None:intergenic |
| TTTATGATCCACGTATGTGA+AGG | 0.575433 | tig0023139:+85398 | None:intergenic |
| TTGAACCTGAGAAACCAAAT+GGG | 0.577631 | tig0023139:+84253 | None:intergenic |
| TAGTGTTCGGCGGAGGAGAG+GGG | 0.579912 | tig0023139:+88487 | None:intergenic |
| CTCTTACCAGAAGTTCAGGA+TGG | 0.580229 | tig0023139:-84724 | Msa1405540:CDS |
| TGTGTTATGCAGATAGATTG+TGG | 0.580846 | tig0023139:-87883 | Msa1405540:intron |
| TATCAAGAAAATTAGAAAGG+GGG | 0.582590 | tig0023139:-87029 | Msa1405540:CDS |
| GGTTAGTGAGTAAGTGATTG+AGG | 0.582839 | tig0023139:+88380 | None:intergenic |
| TACTGACCTCTTGCAGCCAA+AGG | 0.583268 | tig0023139:-86987 | Msa1405540:intron |
| AGCATACCTTTGGCTGCAAG+AGG | 0.584254 | tig0023139:+86981 | None:intergenic |
| GAGTAAGTGATTGAGGCGAG+TGG | 0.585127 | tig0023139:+88387 | None:intergenic |
| CCATGGTAAGTGCGCCGAGG+CGG | 0.587717 | tig0023139:+88314 | None:intergenic |
| ATCATGCACCTCCACCGCGT+TGG | 0.596653 | tig0023139:+88204 | None:intergenic |
| CTCGAGAAGATTCTCATCGA+AGG | 0.597081 | tig0023139:-85043 | Msa1405540:CDS |
| TATAGCAATTTAGAGAGAGA+TGG | 0.597195 | tig0023139:+84963 | None:intergenic |
| ATGCAGAATCACCAACTGAA+AGG | 0.598509 | tig0023139:+85080 | None:intergenic |
| GAAGGGAGCAGTAGTGAATG+GGG | 0.598831 | tig0023139:+88536 | None:intergenic |
| AAAGAGAGTGGAGTGAGTGG+TGG | 0.602147 | tig0023139:+88646 | None:intergenic |
| AGGGCAGAGAGCTACAACGT+TGG | 0.602461 | tig0023139:+85418 | None:intergenic |
| GGTGTGGAGGAGGAGGCGGA+GGG | 0.603274 | tig0023139:+88426 | None:intergenic |
| CAGCCATGGTAAGTGCGCCG+AGG | 0.604520 | tig0023139:+88311 | None:intergenic |
| TTATGATCCACGTATGTGAA+GGG | 0.607337 | tig0023139:+85399 | None:intergenic |
| GTACATTGCTTAACATATGG+AGG | 0.607730 | tig0023139:-84308 | Msa1405540:CDS |
| ATCTCAAAATGACGACGTGG+CGG | 0.612225 | tig0023139:-88344 | Msa1405540:CDS |
| GGACCCTATCAATTTCGGCT+GGG | 0.618597 | tig0023139:-84471 | Msa1405540:CDS |
| TCAGCATATAAAGTCCGCGC+TGG | 0.621347 | tig0023139:-84929 | Msa1405540:CDS |
| TGAGAAACCAAATGGGAATG+GGG | 0.624351 | tig0023139:+84260 | None:intergenic |
| GAATAGATAGCAAGCATTAG+GGG | 0.624978 | tig0023139:+88114 | None:intergenic |
| TTACCCAGCCGAAATTGATA+GGG | 0.626489 | tig0023139:+84468 | None:intergenic |
| AAAGAAGGACGGGTGATCTG+TGG | 0.627550 | tig0023139:-87073 | Msa1405540:intron |
| CACTGCACAGAGAGCAACAG+TGG | 0.628872 | tig0023139:+88231 | None:intergenic |
| AGCAGTAGTGAATTTGCACA+AGG | 0.637478 | tig0023139:-87850 | Msa1405540:intron |
| TGCAGTGCTAACCAACGCGG+TGG | 0.638145 | tig0023139:-88215 | Msa1405540:CDS |
| AGGGAGCAGTAGTGAATGGG+GGG | 0.646802 | tig0023139:+88538 | None:intergenic |
| CGACGGTGCAGCGATTCTGG+AGG | 0.659267 | tig0023139:-88257 | Msa1405540:CDS |
| GGAAGGGAGGTAGTGTTCGG+CGG | 0.663709 | tig0023139:+88477 | None:intergenic |
| GTGGTCCAAAATTGATTGTG+AGG | 0.672157 | tig0023139:-87054 | Msa1405540:CDS |
| GTGGAGGTGCATGATAACGA+AGG | 0.699848 | tig0023139:-88196 | Msa1405540:CDS |
| CTGTGCAGTGCTAACCAACG+CGG | 0.703481 | tig0023139:-88218 | Msa1405540:CDS |
| AGTTATGAGAGAGAAACATG+AGG | 0.704662 | tig0023139:+88588 | None:intergenic |
| AACATCTCAAAATGACGACG+TGG | 0.725481 | tig0023139:-88347 | Msa1405540:CDS |
| GCCGCAGTAGAAAAGCAAAG+CGG | 0.760151 | tig0023139:-88289 | Msa1405540:CDS |
| CAGATAATAAATCACCAGCG+CGG | 0.796906 | tig0023139:+84915 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTAAAAATTAATTAATTG+AGG | - | tig0023139:85826-85845 | Msa1405540:intron | 10.0% |
| !!! | TATATCAATTTTTTATCAAT+TGG | - | tig0023139:86272-86291 | Msa1405540:intron | 10.0% |
| !! | AAAGAAAAATAAATTACTTG+TGG | + | tig0023139:84928-84947 | None:intergenic | 15.0% |
| !! | TATGTTAAACAATTCATATT+TGG | - | tig0023139:85171-85190 | Msa1405540:CDS | 15.0% |
| !! | ATGTTAAACAATTCATATTT+GGG | - | tig0023139:85172-85191 | Msa1405540:CDS | 15.0% |
| !!! | ACATTTTCTCAAATTATTAT+CGG | + | tig0023139:85222-85241 | None:intergenic | 15.0% |
| !! | TATAATATAAACCATCAATT+TGG | - | tig0023139:86545-86564 | Msa1405540:intron | 15.0% |
| !!! | TGTTATATTTGCTACATAAT+TGG | - | tig0023139:85135-85154 | Msa1405540:CDS | 20.0% |
| !! | TATTCTTAATGTATCAAGTT+AGG | - | tig0023139:85337-85356 | Msa1405540:intron | 20.0% |
| !! | ATTCTTAATGTATCAAGTTA+GGG | - | tig0023139:85338-85357 | Msa1405540:intron | 20.0% |
| !!! | TATTTTGAAAAGTAACTAGT+GGG | - | tig0023139:85657-85676 | Msa1405540:intron | 20.0% |
| !! | TGATGAATTGAGAATAATTT+AGG | - | tig0023139:85686-85705 | Msa1405540:intron | 20.0% |
| !! | GATGAATTGAGAATAATTTA+GGG | - | tig0023139:85687-85706 | Msa1405540:intron | 20.0% |
| !! | AGTTGTGTAAACATTTAATT+TGG | + | tig0023139:85771-85790 | None:intergenic | 20.0% |
| !! | AGTATCAAGAAAATTAGAAA+GGG | - | tig0023139:85907-85926 | Msa1405540:intron | 20.0% |
| !! | TTTATTAAATCCTAGGATTA+TGG | - | tig0023139:86249-86268 | Msa1405540:intron | 20.0% |
| !! | GAAATTAAGTCAAAAAAATG+TGG | + | tig0023139:86632-86651 | None:intergenic | 20.0% |
| !! | TTCAAGATATATTATTTCCA+AGG | + | tig0023139:87125-87144 | None:intergenic | 20.0% |
| !!! | TGGATAGATTTTGTATTAAA+AGG | + | tig0023139:87160-87179 | None:intergenic | 20.0% |
| !! | AGTTTCCTAAATTCATAAAT+GGG | + | tig0023139:87254-87273 | None:intergenic | 20.0% |
| !! | ACAATTTCATCTAATTTATG+AGG | + | tig0023139:87319-87338 | None:intergenic | 20.0% |
| !!! | AATTTGTATTTGGCTTTTTA+GGG | - | tig0023139:87449-87468 | Msa1405540:intron | 20.0% |
| !!! | ATTGATATTCTAGTTTAGTT+AGG | - | tig0023139:87582-87601 | Msa1405540:intron | 20.0% |
| !! | CTAATATTGTATTATTGTTC+AGG | - | tig0023139:87723-87742 | Msa1405540:intron | 20.0% |
| !!! | TAAGTTTCTTAATGTTGATT+TGG | - | tig0023139:88239-88258 | Msa1405540:CDS | 20.0% |
| !! | AAAAAAATTCACTAGATGTT+CGG | - | tig0023139:88499-88518 | Msa1405540:CDS | 20.0% |
| !!! | TTATTGGCTTATATATGTTA+TGG | - | tig0023139:88654-88673 | Msa1405540:CDS | 20.0% |
| !! | TTTGAGATGTTAGTAAATGA+CGG | + | tig0023139:84582-84601 | None:intergenic | 25.0% |
| ! | ATTTATCTTGTGTAATCACA+TGG | - | tig0023139:85242-85261 | Msa1405540:intron | 25.0% |
| ! | TTTATCTTGTGTAATCACAT+GGG | - | tig0023139:85243-85262 | Msa1405540:intron | 25.0% |
| !!! | TAAGATACGCTTTTTATTGA+AGG | + | tig0023139:85302-85321 | None:intergenic | 25.0% |
| !! | AAGCTATAAACTATTTTCAG+AGG | + | tig0023139:85492-85511 | None:intergenic | 25.0% |
| ! | TTATACATTAGTGCTTATCA+TGG | - | tig0023139:85559-85578 | Msa1405540:intron | 25.0% |
| !!! | CACTAGTTACTTTTCAAAAT+AGG | + | tig0023139:85658-85677 | None:intergenic | 25.0% |
| !!! | CTATTTTGAAAAGTAACTAG+TGG | - | tig0023139:85656-85675 | Msa1405540:intron | 25.0% |
| ! | TCATTATATGTCTATTGTTC+AGG | - | tig0023139:85715-85734 | Msa1405540:intron | 25.0% |
| !! | TGATGATATGCTTAGATTTT+TGG | - | tig0023139:85801-85820 | Msa1405540:intron | 25.0% |
| !!! | GATTTTTTGCATGAAAAAGA+AGG | - | tig0023139:85850-85869 | Msa1405540:intron | 25.0% |
| ! | GAGTATCAAGAAAATTAGAA+AGG | - | tig0023139:85906-85925 | Msa1405540:intron | 25.0% |
| ! | GTATCAAGAAAATTAGAAAG+GGG | - | tig0023139:85908-85927 | Msa1405540:intron | 25.0% |
| ! | TATCAAGAAAATTAGAAAGG+GGG | - | tig0023139:85909-85928 | Msa1405540:intron | 25.0% |
| !! | ATAAATTTGAAGCATACCTT+TGG | + | tig0023139:85970-85989 | None:intergenic | 25.0% |
| ! | AAAGGAATAATTATATGCTG+TGG | - | tig0023139:86141-86160 | Msa1405540:intron | 25.0% |
| !!! | AGTTGGTTTTATTAAATCCT+AGG | - | tig0023139:86242-86261 | Msa1405540:intron | 25.0% |
| ! | AATTGATATACCATAATCCT+AGG | + | tig0023139:86262-86281 | None:intergenic | 25.0% |
| ! | TCATGATGCTATTAATTAGT+GGG | - | tig0023139:86296-86315 | Msa1405540:intron | 25.0% |
| ! | AGAACAAAACTAACCAAAAT+AGG | + | tig0023139:86342-86361 | None:intergenic | 25.0% |
| ! | TAATTTCTTGAGTTTAGACT+TGG | - | tig0023139:86645-86664 | Msa1405540:intron | 25.0% |
| ! | TATGGACATTAATACACAAA+GGG | + | tig0023139:86735-86754 | None:intergenic | 25.0% |
| !!! | TGTCTTGTGTTATTACTTTT+AGG | - | tig0023139:86822-86841 | Msa1405540:intron | 25.0% |
| ! | CAGTTTCCTAAATTCATAAA+TGG | + | tig0023139:87255-87274 | None:intergenic | 25.0% |
| ! | TTCTAGTCTCAATTTGTATT+TGG | - | tig0023139:87439-87458 | Msa1405540:intron | 25.0% |
| !!! | CAATTTGTATTTGGCTTTTT+AGG | - | tig0023139:87448-87467 | Msa1405540:intron | 25.0% |
| !! | ATATTACAGAAAGCATATCT+GGG | + | tig0023139:87662-87681 | None:intergenic | 25.0% |
| !! | TACAATATTAGTTTCACTTC+CGG | + | tig0023139:87714-87733 | None:intergenic | 25.0% |
| ! | GTCTATGAAGAAATTGTAAT+TGG | + | tig0023139:87788-87807 | None:intergenic | 25.0% |
| ! | TATAACATCTTCAATGGAAT+CGG | + | tig0023139:87830-87849 | None:intergenic | 25.0% |
| !! | TAAATTTTGTGTAAGAAGCA+AGG | + | tig0023139:88275-88294 | None:intergenic | 25.0% |
| ! | CAAAATTTAAATGCTGTAAG+TGG | - | tig0023139:88286-88305 | Msa1405540:CDS | 25.0% |
| ! | AAAAAATTCACTAGATGTTC+GGG | - | tig0023139:88500-88519 | Msa1405540:CDS | 25.0% |
| ! | TTTTTGAACATGCTTTCTCT+TGG | - | tig0023139:84785-84804 | Msa1405540:CDS | 30.0% |
| AGAATAGATAGCAAGCATTA+GGG | + | tig0023139:84828-84847 | None:intergenic | 30.0% | |
| !! | TGTTGAGAATTTTGAGTGAA+TGG | + | tig0023139:84904-84923 | None:intergenic | 30.0% |
| ! | TGCTACATAATTGGTTAGTT+AGG | - | tig0023139:85144-85163 | Msa1405540:CDS | 30.0% |
| TCAAATAAGTCAATCCATGT+AGG | + | tig0023139:85364-85383 | None:intergenic | 30.0% | |
| AATAAGCTGTATATCCAAAC+AGG | - | tig0023139:85606-85625 | Msa1405540:intron | 30.0% | |
| ATAAGCTGTATATCCAAACA+GGG | - | tig0023139:85607-85626 | Msa1405540:intron | 30.0% | |
| TGATATCACTCTTTCCAATT+TGG | + | tig0023139:85742-85761 | None:intergenic | 30.0% | |
| ! | TTTTGCATGAAAAAGAAGGA+CGG | - | tig0023139:85854-85873 | Msa1405540:intron | 30.0% |
| ! | ATACTCCTCACAATCAATTT+TGG | + | tig0023139:85892-85911 | None:intergenic | 30.0% |
| !!! | CGTATTAGTTTTTCATGCAT+TGG | - | tig0023139:85996-86015 | Msa1405540:intron | 30.0% |
| ATAATTATTCCTTTGCTGCT+TGG | + | tig0023139:86135-86154 | None:intergenic | 30.0% | |
| GAATAGATGGAATGTTGTAA+TGG | - | tig0023139:86186-86205 | Msa1405540:intron | 30.0% | |
| CTCATGATGCTATTAATTAG+TGG | - | tig0023139:86295-86314 | Msa1405540:intron | 30.0% | |
| ! | TGTATCTTTGAGTCCTATTT+TGG | - | tig0023139:86326-86345 | Msa1405540:intron | 30.0% |
| CTAGATGATTTCTATATCAC+TGG | - | tig0023139:86363-86382 | Msa1405540:intron | 30.0% | |
| TAAGTCAAAAAAATGTGGCA+TGG | + | tig0023139:86627-86646 | None:intergenic | 30.0% | |
| ATGGACATTAATACACAAAG+GGG | + | tig0023139:86734-86753 | None:intergenic | 30.0% | |
| CTATGGACATTAATACACAA+AGG | + | tig0023139:86736-86755 | None:intergenic | 30.0% | |
| CTTTGTGTATTAATGTCCAT+AGG | - | tig0023139:86734-86753 | Msa1405540:intron | 30.0% | |
| CCTTCGTTATTATACATGTA+CGG | - | tig0023139:86849-86868 | Msa1405540:intron | 30.0% | |
| CTTCGTTATTATACATGTAC+GGG | - | tig0023139:86850-86869 | Msa1405540:intron | 30.0% | |
| ! | TTTTGTCTACCGTAATATAC+AGG | + | tig0023139:86887-86906 | None:intergenic | 30.0% |
| !! | TCTGTAACTTGTCTCAATTT+TGG | - | tig0023139:86966-86985 | Msa1405540:intron | 30.0% |
| ! | TTTGTTGTATAGTATCTCCT+TGG | - | tig0023139:87105-87124 | Msa1405540:intron | 30.0% |
| AATATATGCTACATATCGAG+TGG | + | tig0023139:87184-87203 | None:intergenic | 30.0% | |
| TCTTGAAATACAATGACAAC+AGG | + | tig0023139:87218-87237 | None:intergenic | 30.0% | |
| TGAATTTAGGAAACTGTCAA+AGG | - | tig0023139:87259-87278 | Msa1405540:intron | 30.0% | |
| ! | TATTACAGAAAGCATATCTG+GGG | + | tig0023139:87661-87680 | None:intergenic | 30.0% |
| ! | CATATTACAGAAAGCATATC+TGG | + | tig0023139:87663-87682 | None:intergenic | 30.0% |
| ! | ACAATATTAGTTTCACTTCC+GGG | + | tig0023139:87713-87732 | None:intergenic | 30.0% |
| CTCTGATATAACATCTTCAA+TGG | + | tig0023139:87836-87855 | None:intergenic | 30.0% | |
| TATAGCAATTTAGAGAGAGA+TGG | + | tig0023139:87978-87997 | None:intergenic | 30.0% | |
| TCATATCAAAAGCTTTCGAT+TGG | + | tig0023139:88071-88090 | None:intergenic | 30.0% | |
| TAACAAAAAATATGCAGCAC+TGG | + | tig0023139:88100-88119 | None:intergenic | 30.0% | |
| !!! | TGCTGCATATTTTTTGTTAC+TGG | - | tig0023139:88101-88120 | Msa1405540:CDS | 30.0% |
| ! | TTGCATCAGTTGCTAATTTT+TGG | - | tig0023139:88166-88185 | Msa1405540:CDS | 30.0% |
| !! | TCAGTTGCTAATTTTTGGAT+AGG | - | tig0023139:88171-88190 | Msa1405540:CDS | 30.0% |
| ! | TTTAGAGCCTGTATGTTAAA+TGG | - | tig0023139:88324-88343 | Msa1405540:CDS | 30.0% |
| GATTTGACCATTTAACATAC+AGG | + | tig0023139:88334-88353 | None:intergenic | 30.0% | |
| CCTTGCATGATTTCAAAAAA+TGG | + | tig0023139:88449-88468 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTGAAATCATGCA+AGG | - | tig0023139:88446-88465 | Msa1405540:CDS | 30.0% |
| !! | GTAACACATATTTTTCAGCT+TGG | - | tig0023139:88606-88625 | Msa1405540:CDS | 30.0% |
| CTTAACATATGGAGGTTTAT+TGG | - | tig0023139:88638-88657 | Msa1405540:CDS | 30.0% | |
| CAAACTCTCATCTTTGACAA+TGG | - | tig0023139:84219-84238 | Msa1405540:CDS | 35.0% | |
| AGTTATGAGAGAGAAACATG+AGG | + | tig0023139:84353-84372 | None:intergenic | 35.0% | |
| GGATTATTGGAATTGGGAAT+GGG | + | tig0023139:84382-84401 | None:intergenic | 35.0% | |
| GAATAGATAGCAAGCATTAG+GGG | + | tig0023139:84827-84846 | None:intergenic | 35.0% | |
| GAGAATAGATAGCAAGCATT+AGG | + | tig0023139:84829-84848 | None:intergenic | 35.0% | |
| TGTGTTATGCAGATAGATTG+TGG | - | tig0023139:85055-85074 | Msa1405540:CDS | 35.0% | |
| ! | CAGATAGATTGTGGTGTTTT+TGG | - | tig0023139:85064-85083 | Msa1405540:CDS | 35.0% |
| TTGAGTTTACCTACTGACAT+AGG | - | tig0023139:85380-85399 | Msa1405540:intron | 35.0% | |
| CTCATAAAACCTATGTCAGT+AGG | + | tig0023139:85392-85411 | None:intergenic | 35.0% | |
| AGAGTGGAAATTTGTGACTA+AGG | + | tig0023139:85633-85652 | None:intergenic | 35.0% | |
| ! | CTTTTCAAAATAGGAGAGAG+TGG | + | tig0023139:85649-85668 | None:intergenic | 35.0% |
| TCTATTGTTCAGGACCAAAT+TGG | - | tig0023139:85725-85744 | Msa1405540:intron | 35.0% | |
| ATTGGAAAGAGTGATATCAG+AGG | - | tig0023139:85743-85762 | Msa1405540:intron | 35.0% | |
| TTGGAAAGAGTGATATCAGA+GGG | - | tig0023139:85744-85763 | Msa1405540:intron | 35.0% | |
| TTTGCATGAAAAAGAAGGAC+GGG | - | tig0023139:85855-85874 | Msa1405540:intron | 35.0% | |
| ATAGCAACAGTGTGAATAGA+TGG | - | tig0023139:86173-86192 | Msa1405540:intron | 35.0% | |
| ! | TTACTAGCTGAAGTGAGTTT+TGG | - | tig0023139:86219-86238 | Msa1405540:intron | 35.0% |
| TGATTTCTATATCACTGGAG+TGG | - | tig0023139:86368-86387 | Msa1405540:intron | 35.0% | |
| TGATGTTCATGGTTATGTGT+AGG | - | tig0023139:86395-86414 | Msa1405540:intron | 35.0% | |
| ! | TAAACCATCAATTTGGTGAG+TGG | - | tig0023139:86552-86571 | Msa1405540:intron | 35.0% |
| ATTACCACTCACCAAATTGA+TGG | + | tig0023139:86559-86578 | None:intergenic | 35.0% | |
| TGTCATTGCTCATTTCTCAT+TGG | + | tig0023139:86772-86791 | None:intergenic | 35.0% | |
| GACAGTGATAAATGAAGTTG+TGG | - | tig0023139:86788-86807 | Msa1405540:intron | 35.0% | |
| CCGTACATGTATAATAACGA+AGG | + | tig0023139:86852-86871 | None:intergenic | 35.0% | |
| GTTATTATACATGTACGGGT+TGG | - | tig0023139:86854-86873 | Msa1405540:intron | 35.0% | |
| GGCTTGAATCCTGTATATTA+CGG | - | tig0023139:86875-86894 | Msa1405540:intron | 35.0% | |
| CCATTGAAAAAGAGATACAG+TGG | + | tig0023139:87062-87081 | None:intergenic | 35.0% | |
| !!! | CCACTGTATCTCTTTTTCAA+TGG | - | tig0023139:87059-87078 | Msa1405540:CDS | 35.0% |
| TCCTGCCCATTTATGAATTT+AGG | - | tig0023139:87246-87265 | Msa1405540:intron | 35.0% | |
| TCCTAAATTCATAAATGGGC+AGG | + | tig0023139:87250-87269 | None:intergenic | 35.0% | |
| TCAAACAAGATCTGAGAAAG+AGG | + | tig0023139:87385-87404 | None:intergenic | 35.0% | |
| !! | TTTTTAGGGAACGAGACAAT+CGG | - | tig0023139:87463-87482 | Msa1405540:intron | 35.0% |
| TTATGATCCACGTATGTGAA+GGG | + | tig0023139:87542-87561 | None:intergenic | 35.0% | |
| TTTATGATCCACGTATGTGA+AGG | + | tig0023139:87543-87562 | None:intergenic | 35.0% | |
| TCCATGAAATGTTTGACGAA+AGG | + | tig0023139:87612-87631 | None:intergenic | 35.0% | |
| ATAAATATTCGTAACTCGCC+CGG | - | tig0023139:87692-87711 | Msa1405540:intron | 35.0% | |
| CAGGAAATATCTGTTCTTTG+TGG | - | tig0023139:87742-87761 | Msa1405540:intron | 35.0% | |
| ! | ATATCAGAGTACCTTTCAGT+TGG | - | tig0023139:87847-87866 | Msa1405540:intron | 35.0% |
| ATTTAGAGAGAGATGGTGAA+GGG | + | tig0023139:87971-87990 | None:intergenic | 35.0% | |
| AATTTAGAGAGAGATGGTGA+AGG | + | tig0023139:87972-87991 | None:intergenic | 35.0% | |
| !!! | GCATATTTTTTGTTACTGGC+AGG | - | tig0023139:88105-88124 | Msa1405540:CDS | 35.0% |
| TTAACTCTTACCAGAAGTTC+AGG | - | tig0023139:88210-88229 | Msa1405540:CDS | 35.0% | |
| TGTAAGAAGCAAGGTTTGAA+AGG | + | tig0023139:88266-88285 | None:intergenic | 35.0% | |
| ATGCTGTAAGTGGTCATTAA+TGG | - | tig0023139:88296-88315 | Msa1405540:CDS | 35.0% | |
| TGCTGTAAGTGGTCATTAAT+GGG | - | tig0023139:88297-88316 | Msa1405540:CDS | 35.0% | |
| CAGACATTACTCGTAATGTT+TGG | - | tig0023139:88403-88422 | Msa1405540:CDS | 35.0% | |
| AAAAATGGCAATCATAGACG+AGG | + | tig0023139:88434-88453 | None:intergenic | 35.0% | |
| CATGAATCTGTGAATAGAAC+TGG | - | tig0023139:88555-88574 | Msa1405540:CDS | 35.0% | |
| GGTGTACATTGCTTAACATA+TGG | - | tig0023139:88627-88646 | Msa1405540:CDS | 35.0% | |
| GTACATTGCTTAACATATGG+AGG | - | tig0023139:88630-88649 | Msa1405540:CDS | 35.0% | |
| TTGAACCTGAGAAACCAAAT+GGG | + | tig0023139:88688-88707 | None:intergenic | 35.0% | |
| TTTGAACCTGAGAAACCAAA+TGG | + | tig0023139:88689-88708 | None:intergenic | 35.0% | |
| CTCATCTTTGACAATGGAGA+TGG | - | tig0023139:84225-84244 | Msa1405540:CDS | 40.0% | |
| TTATTGGAATTGGGAATGGG+AGG | + | tig0023139:84379-84398 | None:intergenic | 40.0% | |
| GGGATTATTGGAATTGGGAA+TGG | + | tig0023139:84383-84402 | None:intergenic | 40.0% | |
| ATGGGGGGATTATTGGAATT+GGG | + | tig0023139:84388-84407 | None:intergenic | 40.0% | |
| AATGGGGGGATTATTGGAAT+TGG | + | tig0023139:84389-84408 | None:intergenic | 40.0% | |
| GGTTAGTGAGTAAGTGATTG+AGG | + | tig0023139:84561-84580 | None:intergenic | 40.0% | |
| AACATCTCAAAATGACGACG+TGG | - | tig0023139:84591-84610 | Msa1405540:CDS | 40.0% | |
| AGAAAGCAGAGAAGAAGAAG+TGG | + | tig0023139:84857-84876 | None:intergenic | 40.0% | |
| GAATGGAACAATGCGAAGTT+TGG | + | tig0023139:84887-84906 | None:intergenic | 40.0% | |
| AGCAGTAGTGAATTTGCACA+AGG | - | tig0023139:85088-85107 | Msa1405540:CDS | 40.0% | |
| !! | CACATGGGTTAGTATTGTGT+CGG | - | tig0023139:85258-85277 | Msa1405540:intron | 40.0% |
| GTGGTCCAAAATTGATTGTG+AGG | - | tig0023139:85884-85903 | Msa1405540:intron | 40.0% | |
| GAAAATTAGAAAGGGGGAAG+AGG | - | tig0023139:85915-85934 | Msa1405540:intron | 40.0% | |
| GATAAACAAACCAGTACGAG+TGG | - | tig0023139:86029-86048 | Msa1405540:intron | 40.0% | |
| ATGGTTATGTGTAGGAGCAA+TGG | - | tig0023139:86403-86422 | Msa1405540:intron | 40.0% | |
| TATGTGTAGGAGCAATGGTT+TGG | - | tig0023139:86408-86427 | Msa1405540:intron | 40.0% | |
| !!! | TAGGAGCAATGGTTTGGTTT+TGG | - | tig0023139:86414-86433 | Msa1405540:intron | 40.0% |
| GATGTGCAAGGAATGACAAA+AGG | + | tig0023139:86472-86491 | None:intergenic | 40.0% | |
| TTCCCATTGTATGGAAACAG+GGG | + | tig0023139:86682-86701 | None:intergenic | 40.0% | |
| CTTCCCATTGTATGGAAACA+GGG | + | tig0023139:86683-86702 | None:intergenic | 40.0% | |
| CTGTAAAGCTTCCCATTGTA+TGG | + | tig0023139:86691-86710 | None:intergenic | 40.0% | |
| GATACAGTGGTTTCTCAGTA+TGG | + | tig0023139:87049-87068 | None:intergenic | 40.0% | |
| TATGCTACATATCGAGTGGA+TGG | + | tig0023139:87180-87199 | None:intergenic | 40.0% | |
| AACAAGATCTGAGAAAGAGG+AGG | + | tig0023139:87382-87401 | None:intergenic | 40.0% | |
| CGGAACTATGGTCTAAGTAT+CGG | - | tig0023139:87483-87502 | Msa1405540:intron | 40.0% | |
| TGAAATGTTTGACGAAAGGC+TGG | + | tig0023139:87608-87627 | None:intergenic | 40.0% | |
| GCCTTTCGTCAAACATTTCA+TGG | - | tig0023139:87608-87627 | Msa1405540:intron | 40.0% | |
| GTTCTTTGTGGAGATTCATC+TGG | - | tig0023139:87754-87773 | Msa1405540:intron | 40.0% | |
| ATGCAGAATCACCAACTGAA+AGG | + | tig0023139:87861-87880 | None:intergenic | 40.0% | |
| TTTAGAGAGAGATGGTGAAG+GGG | + | tig0023139:87970-87989 | None:intergenic | 40.0% | |
| CAGATAATAAATCACCAGCG+CGG | + | tig0023139:88026-88045 | None:intergenic | 40.0% | |
| ! | CGAAAGCTTTTGATATGAGC+AGG | - | tig0023139:88073-88092 | Msa1405540:CDS | 40.0% |
| !! | GCTAATTTTTGGATAGGAGC+TGG | - | tig0023139:88177-88196 | Msa1405540:CDS | 40.0% |
| TGCAAGGACCCTATCAATTT+CGG | - | tig0023139:88462-88481 | Msa1405540:CDS | 40.0% | |
| TTACCCAGCCGAAATTGATA+GGG | + | tig0023139:88473-88492 | None:intergenic | 40.0% | |
| ATTACCCAGCCGAAATTGAT+AGG | + | tig0023139:88474-88493 | None:intergenic | 40.0% | |
| TGAGAAACCAAATGGGAATG+GGG | + | tig0023139:88681-88700 | None:intergenic | 40.0% | |
| CTGAGAAACCAAATGGGAAT+GGG | + | tig0023139:88682-88701 | None:intergenic | 40.0% | |
| TTGTGGAGAGAGAAAGAGAG+TGG | + | tig0023139:84307-84326 | None:intergenic | 45.0% | |
| GTAGTGAATGGGGGGATTAT+TGG | + | tig0023139:84395-84414 | None:intergenic | 45.0% | |
| TGAAGGGAGCAGTAGTGAAT+GGG | + | tig0023139:84406-84425 | None:intergenic | 45.0% | |
| ATCTCAAAATGACGACGTGG+CGG | - | tig0023139:84594-84613 | Msa1405540:CDS | 45.0% | |
| !! | ACCGCTTTGCTTTTCTACTG+CGG | + | tig0023139:84653-84672 | None:intergenic | 45.0% |
| CAGAGAAGAAGAAGTGGAGA+AGG | + | tig0023139:84851-84870 | None:intergenic | 45.0% | |
| !! | ATTGTGTCGGTGTCAGACAT+CGG | - | tig0023139:85271-85290 | Msa1405540:intron | 45.0% |
| GTATCAAGTTAGGGCCTACA+TGG | - | tig0023139:85347-85366 | Msa1405540:intron | 45.0% | |
| TTTGTGACTAAGGCCCTGTT+TGG | + | tig0023139:85623-85642 | None:intergenic | 45.0% | |
| GATATAGCACCAAGCAGCAA+AGG | - | tig0023139:86123-86142 | Msa1405540:intron | 45.0% | |
| !!! | GCTGAAGTGAGTTTTGGAGT+TGG | - | tig0023139:86225-86244 | Msa1405540:intron | 45.0% |
| GTCATTCCTTGCACATCTTG+TGG | - | tig0023139:86475-86494 | Msa1405540:intron | 45.0% | |
| TTCCTTGCACATCTTGTGGT+TGG | - | tig0023139:86479-86498 | Msa1405540:intron | 45.0% | |
| ATCCAACCACAAGATGTGCA+AGG | + | tig0023139:86484-86503 | None:intergenic | 45.0% | |
| ACACCCCTGTTTCCATACAA+TGG | - | tig0023139:86676-86695 | Msa1405540:intron | 45.0% | |
| CACCCCTGTTTCCATACAAT+GGG | - | tig0023139:86677-86696 | Msa1405540:intron | 45.0% | |
| GCTTCCCATTGTATGGAAAC+AGG | + | tig0023139:86684-86703 | None:intergenic | 45.0% | |
| ATGTCCATAGGCTGTAGCAA+TGG | - | tig0023139:86746-86765 | Msa1405540:intron | 45.0% | |
| GAACGAGACAATCGGAACTA+TGG | - | tig0023139:87471-87490 | Msa1405540:intron | 45.0% | |
| CTCGAGAAGATTCTCATCGA+AGG | - | tig0023139:87895-87914 | Msa1405540:intron | 45.0% | |
| ! | CGCGCTGGTGATTTATTATC+TGG | - | tig0023139:88024-88043 | Msa1405540:intron | 45.0% |
| CTCTTACCAGAAGTTCAGGA+TGG | - | tig0023139:88214-88233 | Msa1405540:CDS | 45.0% | |
| CTTACTCCATCCTGAACTTC+TGG | + | tig0023139:88223-88242 | None:intergenic | 45.0% | |
| CGGGCTCATGATATCAAAAC+TGG | - | tig0023139:88519-88538 | Msa1405540:CDS | 45.0% | |
| TTATGGTCCCCATTCCCATT+TGG | - | tig0023139:88671-88690 | Msa1405540:CDS | 45.0% | |
| CCTGAGAAACCAAATGGGAA+TGG | + | tig0023139:88683-88702 | None:intergenic | 45.0% | |
| ! | CCATTCCCATTTGGTTTCTC+AGG | - | tig0023139:88680-88699 | Msa1405540:CDS | 45.0% |
| AAAGAGAGTGGAGTGAGTGG+TGG | + | tig0023139:84295-84314 | None:intergenic | 50.0% | |
| GAGAAAGAGAGTGGAGTGAG+TGG | + | tig0023139:84298-84317 | None:intergenic | 50.0% | |
| AACATGAGGAGCAGTGAGTG+TGG | + | tig0023139:84339-84358 | None:intergenic | 50.0% | |
| TTGGAATTGGGAATGGGAGG+TGG | + | tig0023139:84376-84395 | None:intergenic | 50.0% | |
| AAGGGAGCAGTAGTGAATGG+GGG | + | tig0023139:84404-84423 | None:intergenic | 50.0% | |
| GAAGGGAGCAGTAGTGAATG+GGG | + | tig0023139:84405-84424 | None:intergenic | 50.0% | |
| GTGAAGGGAGCAGTAGTGAA+TGG | + | tig0023139:84407-84426 | None:intergenic | 50.0% | |
| AGTGATTGAGGCGAGTGGAA+GGG | + | tig0023139:84549-84568 | None:intergenic | 50.0% | |
| AAGTGATTGAGGCGAGTGGA+AGG | + | tig0023139:84550-84569 | None:intergenic | 50.0% | |
| GAGTAAGTGATTGAGGCGAG+TGG | + | tig0023139:84554-84573 | None:intergenic | 50.0% | |
| GCCGCAGTAGAAAAGCAAAG+CGG | - | tig0023139:84649-84668 | Msa1405540:CDS | 50.0% | |
| ! | GTGGAGGTGCATGATAACGA+AGG | - | tig0023139:84742-84761 | Msa1405540:CDS | 50.0% |
| GATAACGAAGGATGCGCACT+CGG | - | tig0023139:84754-84773 | Msa1405540:CDS | 50.0% | |
| ATAACGAAGGATGCGCACTC+GGG | - | tig0023139:84755-84774 | Msa1405540:CDS | 50.0% | |
| !! | TTGTGTCGGTGTCAGACATC+GGG | - | tig0023139:85272-85291 | Msa1405540:intron | 50.0% |
| AAAGAAGGACGGGTGATCTG+TGG | - | tig0023139:85865-85884 | Msa1405540:intron | 50.0% | |
| TACTGACCTCTTGCAGCCAA+AGG | - | tig0023139:85951-85970 | Msa1405540:intron | 50.0% | |
| AGCATACCTTTGGCTGCAAG+AGG | + | tig0023139:85960-85979 | None:intergenic | 50.0% | |
| CAAACCAGTACGAGTGGAAG+AGG | - | tig0023139:86035-86054 | Msa1405540:intron | 50.0% | |
| TTCTCCTCTTCCACTCGTAC+TGG | + | tig0023139:86042-86061 | None:intergenic | 50.0% | |
| GGAGTGGATGCTGATGTTCA+TGG | - | tig0023139:86384-86403 | Msa1405540:intron | 50.0% | |
| TTGGCCATTGCTACAGCCTA+TGG | + | tig0023139:86753-86772 | None:intergenic | 50.0% | |
| TCAGCATATAAAGTCCGCGC+TGG | - | tig0023139:88009-88028 | Msa1405540:intron | 50.0% | |
| AGGACCCTATCAATTTCGGC+TGG | - | tig0023139:88466-88485 | Msa1405540:CDS | 50.0% | |
| GGACCCTATCAATTTCGGCT+GGG | - | tig0023139:88467-88486 | Msa1405540:CDS | 50.0% | |
| ! | GAGTGTGGAGATGGGTGTTG+TGG | + | tig0023139:84324-84343 | None:intergenic | 55.0% |
| GGAGCAGTGAGTGTGGAGAT+GGG | + | tig0023139:84332-84351 | None:intergenic | 55.0% | |
| AGGAGCAGTGAGTGTGGAGA+TGG | + | tig0023139:84333-84352 | None:intergenic | 55.0% | |
| AGGGAGCAGTAGTGAATGGG+GGG | + | tig0023139:84403-84422 | None:intergenic | 55.0% | |
| ATGGGAGGTGGAGCAGTGAA+GGG | + | tig0023139:84422-84441 | None:intergenic | 55.0% | |
| AATGGGAGGTGGAGCAGTGA+AGG | + | tig0023139:84423-84442 | None:intergenic | 55.0% | |
| GGAGAGGGGGATTGAGGAAT+GGG | + | tig0023139:84440-84459 | None:intergenic | 55.0% | |
| AGGAGAGGGGGATTGAGGAA+TGG | + | tig0023139:84441-84460 | None:intergenic | 55.0% | |
| GGAGGAAGGGAGGTAGTGTT+CGG | + | tig0023139:84467-84486 | None:intergenic | 55.0% | |
| GTGATTGAGGCGAGTGGAAG+GGG | + | tig0023139:84548-84567 | None:intergenic | 55.0% | |
| ! | CTTTTCTACTGCGGCAGCCA+TGG | + | tig0023139:84644-84663 | None:intergenic | 55.0% |
| CAAAGCGGTTGCAGCAACGA+CGG | - | tig0023139:84664-84683 | Msa1405540:CDS | 55.0% | |
| CACTGCACAGAGAGCAACAG+TGG | + | tig0023139:84710-84729 | None:intergenic | 55.0% | |
| CTGTGCAGTGCTAACCAACG+CGG | - | tig0023139:84720-84739 | Msa1405540:CDS | 55.0% | |
| AGGGCAGAGAGCTACAACGT+TGG | + | tig0023139:87523-87542 | None:intergenic | 55.0% | |
| CTCTCTGCCCTTCACATACG+TGG | - | tig0023139:87532-87551 | Msa1405540:intron | 55.0% | |
| GGTGTAGACGAGCAGCTAGA+AGG | - | tig0023139:87916-87935 | Msa1405540:intron | 55.0% | |
| GGGGATTGAGGAATGGGAGG+TGG | + | tig0023139:84434-84453 | None:intergenic | 60.0% | |
| GAGGGGGATTGAGGAATGGG+AGG | + | tig0023139:84437-84456 | None:intergenic | 60.0% | |
| TAGTGTTCGGCGGAGGAGAG+GGG | + | tig0023139:84454-84473 | None:intergenic | 60.0% | |
| GTAGTGTTCGGCGGAGGAGA+GGG | + | tig0023139:84455-84474 | None:intergenic | 60.0% | |
| GGAAGGGAGGTAGTGTTCGG+CGG | + | tig0023139:84464-84483 | None:intergenic | 60.0% | |
| !! | GAAGGTTGGTGTGGAGGAGG+AGG | + | tig0023139:84522-84541 | None:intergenic | 60.0% |
| !! | AGGGAAGGTTGGTGTGGAGG+AGG | + | tig0023139:84525-84544 | None:intergenic | 60.0% |
| !! | AAGGGGAGGGAAGGTTGGTG+TGG | + | tig0023139:84531-84550 | None:intergenic | 60.0% |
| AGTGGAAGGGGAGGGAAGGT+TGG | + | tig0023139:84536-84555 | None:intergenic | 60.0% | |
| TTGAGGCGAGTGGAAGGGGA+GGG | + | tig0023139:84544-84563 | None:intergenic | 60.0% | |
| ATTGAGGCGAGTGGAAGGGG+AGG | + | tig0023139:84545-84564 | None:intergenic | 60.0% | |
| CAACGACGGTGCAGCGATTC+TGG | - | tig0023139:84678-84697 | Msa1405540:CDS | 60.0% | |
| TGCAGTGCTAACCAACGCGG+TGG | - | tig0023139:84723-84742 | Msa1405540:CDS | 60.0% | |
| AGTGCTAACCAACGCGGTGG+AGG | - | tig0023139:84726-84745 | Msa1405540:CDS | 60.0% | |
| ATCATGCACCTCCACCGCGT+TGG | + | tig0023139:84737-84756 | None:intergenic | 60.0% | |
| AGTGTTCGGCGGAGGAGAGG+GGG | + | tig0023139:84453-84472 | None:intergenic | 65.0% | |
| GGTAGTGTTCGGCGGAGGAG+AGG | + | tig0023139:84456-84475 | None:intergenic | 65.0% | |
| AGGGAGGTAGTGTTCGGCGG+AGG | + | tig0023139:84461-84480 | None:intergenic | 65.0% | |
| AGGAGGTGGAGGAGGAAGGG+AGG | + | tig0023139:84477-84496 | None:intergenic | 65.0% | |
| GGGAGGAGGTGGAGGAGGAA+GGG | + | tig0023139:84480-84499 | None:intergenic | 65.0% | |
| AGGGAGGAGGTGGAGGAGGA+AGG | + | tig0023139:84481-84500 | None:intergenic | 65.0% | |
| GAGTAGGGAGGAGGTGGAGG+AGG | + | tig0023139:84485-84504 | None:intergenic | 65.0% | |
| ! | GGTTGGTGTGGAGGAGGAGG+CGG | + | tig0023139:84519-84538 | None:intergenic | 65.0% |
| !! | GGGAGGGAAGGTTGGTGTGG+AGG | + | tig0023139:84528-84547 | None:intergenic | 65.0% |
| CCATGGTAAGTGCGCCGAGG+CGG | + | tig0023139:84627-84646 | None:intergenic | 65.0% | |
| CAGCCATGGTAAGTGCGCCG+AGG | + | tig0023139:84630-84649 | None:intergenic | 65.0% | |
| CGACGGTGCAGCGATTCTGG+AGG | - | tig0023139:84681-84700 | Msa1405540:CDS | 65.0% | |
| GGCGGAGGAGAGGGGGATTG+AGG | + | tig0023139:84446-84465 | None:intergenic | 70.0% | |
| GCGGAGTAGGGAGGAGGTGG+AGG | + | tig0023139:84488-84507 | None:intergenic | 70.0% | |
| GGTGCGGAGTAGGGAGGAGG+TGG | + | tig0023139:84491-84510 | None:intergenic | 70.0% | |
| GGTGTGGAGGAGGAGGCGGA+GGG | + | tig0023139:84515-84534 | None:intergenic | 70.0% | |
| TGGTGTGGAGGAGGAGGCGG+AGG | + | tig0023139:84516-84535 | None:intergenic | 70.0% | |
| GGCGAGTGGAAGGGGAGGGA+AGG | + | tig0023139:84540-84559 | None:intergenic | 70.0% | |
| ! | GTGGCGGAAACCGTCCGCCT+CGG | - | tig0023139:84610-84629 | Msa1405540:CDS | 70.0% |
| GGTAAGTGCGCCGAGGCGGA+CGG | + | tig0023139:84623-84642 | None:intergenic | 70.0% | |
| CCGCCTCGGCGCACTTACCA+TGG | - | tig0023139:84624-84643 | Msa1405540:CDS | 70.0% | |
| GGCGGTGCGGAGTAGGGAGG+AGG | + | tig0023139:84494-84513 | None:intergenic | 75.0% | |
| GAGGGCGGTGCGGAGTAGGG+AGG | + | tig0023139:84497-84516 | None:intergenic | 75.0% | |
| GCGGAGGGCGGTGCGGAGTA+GGG | + | tig0023139:84500-84519 | None:intergenic | 75.0% | |
| GTGGAGGAGGAGGCGGAGGG+CGG | + | tig0023139:84512-84531 | None:intergenic | 75.0% | |
| ! | GGCGGAGGGCGGTGCGGAGT+AGG | + | tig0023139:84501-84520 | None:intergenic | 80.0% |
| ! | GGAGGAGGCGGAGGGCGGTG+CGG | + | tig0023139:84507-84526 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023139 | gene | 84214 | 88746 | 84214 | ID=Msa1405540;Name=Msa1405540 |
| tig0023139 | mRNA | 84214 | 88746 | 84214 | ID=Msa1405540-mRNA-1;Parent=Msa1405540;Name=Msa1405540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=24|1|0.8|1|1|1|5|0|646 |
| tig0023139 | exon | 84214 | 85215 | 84214 | ID=Msa1405540-mRNA-1:exon:24138;Parent=Msa1405540-mRNA-1 |
| tig0023139 | exon | 85392 | 85490 | 85392 | ID=Msa1405540-mRNA-1:exon:24137;Parent=Msa1405540-mRNA-1 |
| tig0023139 | exon | 86988 | 87091 | 86988 | ID=Msa1405540-mRNA-1:exon:24136;Parent=Msa1405540-mRNA-1 |
| tig0023139 | exon | 87851 | 87893 | 87851 | ID=Msa1405540-mRNA-1:exon:24135;Parent=Msa1405540-mRNA-1 |
| tig0023139 | exon | 88030 | 88746 | 88030 | ID=Msa1405540-mRNA-1:exon:24134;Parent=Msa1405540-mRNA-1 |
| tig0023139 | five_prime_UTR | 88723 | 88746 | 88723 | ID=Msa1405540-mRNA-1:five_prime_utr;Parent=Msa1405540-mRNA-1 |
| tig0023139 | CDS | 88030 | 88722 | 88030 | ID=Msa1405540-mRNA-1:cds;Parent=Msa1405540-mRNA-1 |
| tig0023139 | CDS | 87851 | 87893 | 87851 | ID=Msa1405540-mRNA-1:cds;Parent=Msa1405540-mRNA-1 |
| tig0023139 | CDS | 86988 | 87091 | 86988 | ID=Msa1405540-mRNA-1:cds;Parent=Msa1405540-mRNA-1 |
| tig0023139 | CDS | 85392 | 85490 | 85392 | ID=Msa1405540-mRNA-1:cds;Parent=Msa1405540-mRNA-1 |
| tig0023139 | CDS | 84214 | 85215 | 84214 | ID=Msa1405540-mRNA-1:cds;Parent=Msa1405540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
