AlfalfaGEDB | Msa1405540

M. sativa cultivar zhongmu-4 / Msa1405540

KEGG: K11426
GO: -
PFAM: PF00856.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1405540	XP_024632337.1	89.783	646	57	6	6	646	16	657	0.0	1102

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1405540	sp\|Q3ECY6\|SDG41_ARATH	36.916	642	310	17	3	634	1	557	1.05e-110	347

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1405540	G7IQD7	89.645	647	57	7	6	646	16	658	0.0	1098

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TFs/TRs:

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Gene ID	Type	Classification
Msa1405540	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1405540	MtrunA17_Chr2g0302141	89.645	647	57	7	6	646	16	658	0.0	1098
Msa1405540	MtrunA17_Chr3g0108341	88.172	93	10	1	136	228	1	92	2.07e-49	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1405540	AT1G43245.1	36.916	642	310	17	3	634	1	557	1.06e-111	347
Msa1405540	AT1G43245.2	37.986	566	283	15	3	559	1	507	2.67e-102	323

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Find 146 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGACGGGTGATCTG+TGG	0.627550	tig0023139:-87073	Msa1405540:intron
AAAGAGAGTGGAGTGAGTGG+TGG	0.602147	tig0023139:+88646	None:intergenic
AACATCTCAAAATGACGACG+TGG	0.725481	tig0023139:-88347	Msa1405540:CDS
AACATGAGGAGCAGTGAGTG+TGG	0.535051	tig0023139:+88602	None:intergenic
AAGGGAGCAGTAGTGAATGG+GGG	0.551100	tig0023139:+88537	None:intergenic
AAGGGGAGGGAAGGTTGGTG+TGG	0.453799	tig0023139:+88410	None:intergenic
AAGTGATTGAGGCGAGTGGA+AGG	0.461563	tig0023139:+88391	None:intergenic
AATGGGAGGTGGAGCAGTGA+AGG	0.372109	tig0023139:+88518	None:intergenic
AATTTAGAGAGAGATGGTGA+AGG	0.510703	tig0023139:+84969	None:intergenic
AGAAAGCAGAGAAGAAGAAG+TGG	0.500998	tig0023139:+88084	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAATAGATAGCAAGCATTA+GGG	+	tig0023139:84828-84847	None:intergenic	30.0%
TCAAATAAGTCAATCCATGT+AGG	+	tig0023139:85364-85383	None:intergenic	30.0%
AATAAGCTGTATATCCAAAC+AGG	-	tig0023139:85606-85625	Msa1405540:intron	30.0%
ATAAGCTGTATATCCAAACA+GGG	-	tig0023139:85607-85626	Msa1405540:intron	30.0%
TGATATCACTCTTTCCAATT+TGG	+	tig0023139:85742-85761	None:intergenic	30.0%
ATAATTATTCCTTTGCTGCT+TGG	+	tig0023139:86135-86154	None:intergenic	30.0%
GAATAGATGGAATGTTGTAA+TGG	-	tig0023139:86186-86205	Msa1405540:intron	30.0%
CTCATGATGCTATTAATTAG+TGG	-	tig0023139:86295-86314	Msa1405540:intron	30.0%
CTAGATGATTTCTATATCAC+TGG	-	tig0023139:86363-86382	Msa1405540:intron	30.0%
TAAGTCAAAAAAATGTGGCA+TGG	+	tig0023139:86627-86646	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023139	gene	84214	88746	84214	ID=Msa1405540;Name=Msa1405540
tig0023139	mRNA	84214	88746	84214	ID=Msa1405540-mRNA-1;Parent=Msa1405540;Name=Msa1405540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=24\|1\|0.8\|1\|1\|1\|5\|0\|646
tig0023139	exon	84214	85215	84214	ID=Msa1405540-mRNA-1:exon:24138;Parent=Msa1405540-mRNA-1
tig0023139	exon	85392	85490	85392	ID=Msa1405540-mRNA-1:exon:24137;Parent=Msa1405540-mRNA-1
tig0023139	exon	86988	87091	86988	ID=Msa1405540-mRNA-1:exon:24136;Parent=Msa1405540-mRNA-1
tig0023139	exon	87851	87893	87851	ID=Msa1405540-mRNA-1:exon:24135;Parent=Msa1405540-mRNA-1
tig0023139	exon	88030	88746	88030	ID=Msa1405540-mRNA-1:exon:24134;Parent=Msa1405540-mRNA-1
tig0023139	five_prime_UTR	88723	88746	88723	ID=Msa1405540-mRNA-1:five_prime_utr;Parent=Msa1405540-mRNA-1
tig0023139	CDS	88030	88722	88030	ID=Msa1405540-mRNA-1:cds;Parent=Msa1405540-mRNA-1
tig0023139	CDS	87851	87893	87851	ID=Msa1405540-mRNA-1:cds;Parent=Msa1405540-mRNA-1
tig0023139	CDS	86988	87091	86988	ID=Msa1405540-mRNA-1:cds;Parent=Msa1405540-mRNA-1
tig0023139	CDS	85392	85490	85392	ID=Msa1405540-mRNA-1:cds;Parent=Msa1405540-mRNA-1
tig0023139	CDS	84214	85215	84214	ID=Msa1405540-mRNA-1:cds;Parent=Msa1405540-mRNA-1

Gene Sequence

>Msa1405540

ATGGAGATGGAGATGAGAAGCACAGAAGACATAGACATAGCAACAGACATAACACCACCACTCACTCCACTCTCTTTCTCTCTCCACAACACCCATCTCCACACTCACTGCTCCTCATGTTTCTCTCTCATAACTCCACCTCCCATTCCCAATTCCAATAATCCCCCCATTCACTACTGCTCCCTTCACTGCTCCACCTCCCATTCCTCAATCCCCCTCTCCTCCGCCGAACACTACCTCCCTTCCTCCTCCACCTCCTCCCTACTCCGCACCGCCCTCCGCCTCCTCCTCCACACCAACCTTCCCTCCCCTTCCACTCGCCTCAATCACTTACTCACTAACCGTCATTTACTAACATCTCAAAATGACGACGTGGCGGAAACCGTCCGCCTCGGCGCACTTACCATGGCTGCCGCAGTAGAAAAGCAAAGCGGTTGCAGCAACGACGGTGCAGCGATTCTGGAGGATGCCACTGTTGCTCTCTGTGCAGTGCTAACCAACGCGGTGGAGGTGCATGATAACGAAGGATGCGCACTCGGGATTGCTGTTTTTGAACATGCTTTCTCTTGGATTAATCATAGTTGTTCCCCTAATGCTTGCTATCTATTCTCCTTCTCCACTTCTTCTTCTCTGCTTTCTCATGAATCCAAACTTCGCATTGTTCCATTCACTCAAAATTCTCAACAACCACAAATAGATTGTGGTGTTTTTGGTAGCAGTAGTGAATTTGCACAAGAAGGACGGGTGATCTGTGGTCCAAAATTGATTGTGAGGAGTATCAAGAAAATTAGAAAGGGGGAAGAGGTCACTGTAGCATATACTGACCTCTTGCAGCCAAAGGGAACGAGACAATCGGAACTATGGTCTAAGTATCGGTTTATTTGTTGCTGCCAACGTTGTAGCTCTCTGCCCTTCACATACGTGGATCATAAATTGCAAGAAATATCTGTTCTTTGTGGAGATTCATCTGGTTTACGTTCCAATTACAATTTCTTCATAGACATGATTGATAGAAGATTGACCGATTCCATTGAAGATGTTATATCAGAGTACCTTTCAGTTGGTGATTCTGCATCTTGTTGTGAGAAGCTCGAGAAGATTCTCATCGAAGGTGTAGACGAGCAGCTAGAAGGAAAAGCACATTCTCAGTTCACGCTGCATCCCCTTCACCATCTCTCTCTAAATTGCTATATGACACTAGCTTCAGCATATAAAGTCCGCGCTGGTGATTTATTATCTGGAGATTCTGAAATTGATTTTAACCAATCGAAAGCTTTTGATATGAGCAGGACCAGTGCTGCATATTTTTTGTTACTGGCAGGTGCAGCTCATCATCTTTTCAATTCTGAATCATCACTTATTGCATCAGTTGCTAATTTTTGGATAGGAGCTGGTGAATCTTTGTTAACTCTTACCAGAAGTTCAGGATGGAGTAAGTTTCTTAATGTTGATTTGGTCCTTTCAAACCTTGCTTCTTACACAAAATTTAAATGCTGTAAGTGGTCATTAATGGGTACTTTTAGAGCCTGTATGTTAAATGGTCAAATCAATTGTGAAGATTTTGAGAATGTATCAAATGAGTTCATTCGTTCTGTCTCAGACATTACTCGTAATGTTTGGAGTTTCCTCGTCTATGATTGCCATTTTTTGAAATCATGCAAGGACCCTATCAATTTCGGCTGGGTAATGTCTGAAAAAAATTCACTAGATGTTCGGGCTCATGATATCAAAACTGGTATGTGTTACACACATGAATCTGTGAATAGAACTGGTTTTCGTGAAGAACAAGATTACAATGCAGTAACACATATTTTTCAGCTTGGTGTACATTGCTTAACATATGGAGGTTTATTGGCTTATATATGTTATGGTCCCCATTCCCATTTGGTTTCTCAGGTTCAAAATATTCTAGATCATAAAAATGATTTTTTATTTTCATGA

Protein sequence

>Msa1405540

MEMEMRSTEDIDIATDITPPLTPLSFSLHNTHLHTHCSSCFSLITPPPIPNSNNPPIHYCSLHCSTSHSSIPLSSAEHYLPSSSTSSLLRTALRLLLHTNLPSPSTRLNHLLTNRHLLTSQNDDVAETVRLGALTMAAAVEKQSGCSNDGAAILEDATVALCAVLTNAVEVHDNEGCALGIAVFEHAFSWINHSCSPNACYLFSFSTSSSLLSHESKLRIVPFTQNSQQPQIDCGVFGSSSEFAQEGRVICGPKLIVRSIKKIRKGEEVTVAYTDLLQPKGTRQSELWSKYRFICCCQRCSSLPFTYVDHKLQEISVLCGDSSGLRSNYNFFIDMIDRRLTDSIEDVISEYLSVGDSASCCEKLEKILIEGVDEQLEGKAHSQFTLHPLHHLSLNCYMTLASAYKVRAGDLLSGDSEIDFNQSKAFDMSRTSAAYFLLLAGAAHHLFNSESSLIASVANFWIGAGESLLTLTRSSGWSKFLNVDLVLSNLASYTKFKCCKWSLMGTFRACMLNGQINCEDFENVSNEFIRSVSDITRNVWSFLVYDCHFLKSCKDPINFGWVMSEKNSLDVRAHDIKTGMCYTHESVNRTGFREEQDYNAVTHIFQLGVHCLTYGGLLAYICYGPHSHLVSQVQNILDHKNDFLFS*