AlfalfaGEDB | Msa1406820

M. sativa cultivar zhongmu-4 / Msa1406820

KEGG: K04730|K04733
GO: GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379
PFAM: PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406820	RHN49451.1	91.880	665	22	3	1	642	19	674	0.0	1207

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406820	sp\|Q9LXA5\|LRK91_ARATH	43.634	644	298	13	13	622	5	617	8.35e-165	489

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406820	A0A396HA86	91.880	665	22	3	1	642	19	674	0.0	1207

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406820	MtrunA17_Chr7g0274661	91.880	665	22	3	1	642	19	674	0.0	1207
Msa1406820	MtrunA17_Chr7g0274651	75.852	675	123	7	1	642	12	679	0.0	1005
Msa1406820	MtrunA17_Chr4g0049551	59.846	650	219	10	9	632	17	650	0.0	720
Msa1406820	MtrunA17_Chr4g0049561	48.913	644	269	9	12	622	11	627	0.0	594
Msa1406820	MtrunA17_Chr4g0049601	46.512	645	294	13	13	628	21	643	0.0	560
Msa1406820	MtrunA17_Chr4g0049611	46.490	641	280	13	10	622	17	622	0.0	550
Msa1406820	MtrunA17_Chr8g0367071	46.687	649	283	13	13	628	23	641	0.0	536
Msa1406820	MtrunA17_Chr4g0049581	45.356	646	279	15	13	628	36	637	2.12e-179	526
Msa1406820	MtrunA17_Chr8g0366991	43.044	611	270	9	69	623	164	752	2.18e-166	495
Msa1406820	MtrunA17_Chr8g0366981	43.564	606	248	14	69	643	65	607	9.56e-157	464

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406820	AT5G10530.1	43.634	644	298	13	13	622	5	617	8.49e-166	489
Msa1406820	AT5G65600.1	43.328	607	267	17	64	628	71	642	8.25e-147	441
Msa1406820	AT5G55830.1	36.873	678	352	21	1	625	1	655	2.39e-126	389
Msa1406820	AT3G55550.1	38.160	587	297	19	75	624	73	630	3.07e-117	365
Msa1406820	AT3G53810.1	35.494	648	340	21	20	623	17	630	6.76e-114	356
Msa1406820	AT5G06740.1	34.052	649	344	16	17	622	9	616	1.53e-109	344
Msa1406820	AT5G06740.2	34.052	649	344	16	17	622	21	628	2.34e-109	344
Msa1406820	AT3G53380.1	35.312	657	350	17	30	622	16	661	6.45e-106	337
Msa1406820	AT4G02410.1	33.503	591	341	14	68	623	64	637	1.89e-105	334
Msa1406820	AT1G70110.1	34.522	617	331	17	40	619	41	621	1.89e-102	326

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Find 149 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAGGTAGTATATGGGT+TGG	0.570235	tig0023244:-86315	Msa1406820:CDS
AACAATTTCAATGCCAAGCT+TGG	0.367413	tig0023244:-85703	Msa1406820:CDS
AACCATGGTTTATCGATATT+AGG	0.315077	tig0023244:-86659	Msa1406820:CDS
AACTTGAGGTTGAAGTCAGT+TGG	0.486778	tig0023244:+87308	None:intergenic
AACTTTCAAATCATGAGCAC+TGG	0.498190	tig0023244:+86599	None:intergenic
AAGACGAAGCTTACAGTGTT+GGG	0.475092	tig0023244:-87282	Msa1406820:CDS
AAGATAGGGCAAGGTGGTTT+TGG	0.262852	tig0023244:-86090	Msa1406820:CDS
AAGCAGGTAGTATATGGGTT+GGG	0.431798	tig0023244:-86314	Msa1406820:CDS
AATCATATTTAAAGCCTTGT+TGG	0.355248	tig0023244:+87374	None:intergenic
AATCCTCTTTATAGCAACAT+TGG	0.497617	tig0023244:+86032	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACAAGTAATCATCATCATT+TGG	+	tig0023244:85269-85288	None:intergenic	30.0%
CTCTCATTTAATTACCAACA+AGG	-	tig0023244:85297-85316	Msa1406820:CDS	30.0%
TAGTAATAAAGTGGAAGTCT+TGG	+	tig0023244:85567-85586	None:intergenic	30.0%
CTATCCGCAATAAATAACTA+AGG	-	tig0023244:85726-85745	Msa1406820:CDS	30.0%
AAGAGACACTTAAAAAGGAA+CGG	-	tig0023244:85828-85847	Msa1406820:CDS	30.0%
GGTCTAATATAACTAAACCA+TGG	-	tig0023244:86011-86030	Msa1406820:CDS	30.0%
AACCATGGTTTATCGATATT+AGG	-	tig0023244:86026-86045	Msa1406820:CDS	30.0%
TTCCTAATATCGATAAACCA+TGG	+	tig0023244:86031-86050	None:intergenic	30.0%
TTCACTGAAAACATAACCAA+TGG	-	tig0023244:86112-86131	Msa1406820:CDS	30.0%
TATGAGAGGTAACTATATGA+AGG	+	tig0023244:86142-86161	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023244	gene	85216	87491	85216	ID=Msa1406820;Name=Msa1406820
tig0023244	mRNA	85216	87491	85216	ID=Msa1406820-mRNA-1;Parent=Msa1406820;Name=Msa1406820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|643
tig0023244	exon	87116	87491	87116	ID=Msa1406820-mRNA-1:exon:24755;Parent=Msa1406820-mRNA-1
tig0023244	exon	85216	86771	85216	ID=Msa1406820-mRNA-1:exon:24754;Parent=Msa1406820-mRNA-1
tig0023244	CDS	87116	87491	87116	ID=Msa1406820-mRNA-1:cds;Parent=Msa1406820-mRNA-1
tig0023244	CDS	85216	86771	85216	ID=Msa1406820-mRNA-1:cds;Parent=Msa1406820-mRNA-1

Gene Sequence

>Msa1406820

ATGGCTATTAGCCGTGTTGGTCTCCATGAAATTGGAATAATTTTCTTGCTCCAAATGATGATGATTACTTGTGTAAAGCCACTCTCATTTAATTACCAACAAGGCTTTAAATATGATTATGTGAAACTAGAAGGAGATGCTTCTTTGCTGTATTCATCCATCCAACTGACTTCAACCTCAAGTTACGAAGACGAAGCTTACAGTGTTGGGAGAGTGACATGTTTTAAGCCATTGCAACTATGGGACAAGACCTCAAGAAAACTCACTGATTTCACTACCCAATTTTCCTTTGTAATTTTCTCTAATAAGACTTATTTTGGAGATGGATTGGCATTTTTCTTTGCAGATCCAAGACTTCCACTTTATTACTACCTCCCAGTGGAGTTTGACACTCACCAAAATGATTGGGATCCACCAGGCACTCATGTAGGTATAAATTTCAATTCTTTGAGGTCTAATATAACTAAACCATGGTTTATCGATATTAGGAATAAGAAGGCTTATCATTGCAAAATTGAGTATAATTCCAGTGCTCATGATTTGAAAGTTTCTTTCACTGAAAACATAACCAATGGTGAGCCTTCATATAGTTACCTCTCATACAATGTTGATTTGAGAGATTACCTACCTGAGAGGGTTATTTTTGGTTTCTCAGCTGCTACAGGATATATGTTTGAGATGAATAAATTGCTGTCATGGTCATTCAATTCAAGTTTAAATCAAACATCTCCATTTGAAGCCTCCCCAATCCCAACAAATCCTAGTCCTTCACCAATTCCCAATGTTAAAATTAGCCATAAAACTGATAGCAAAGCAGGTAGTATATGGGTTGGGGTAGGAGTTGGTGTAGGTATTGCATCAAGTTTCCTTATTTTAGGATGGTTTTGTATTTCAATGTGGAAGAGAGCTAAAGGAAACAAAGAAGATTCTATTTTTGACCTGAAAATGGATGATGAATTCCAAAAGGGCACTGGACCTAAAAAGTTTTGCTATAATAAACTGGTGAGTGCAACAAATAACTTTGCAGAAGCAGAAAAGATAGGGCAAGGTGGTTTTGGTGGTGTTTATAAAGGCTATTTGAAAGATATAGATACCAATGTTGCTATAAAGAGGATTTCAAGAGAGTCTAAACAAGGGATAAAGGAATATGCAACTGAAGTGAAGATCATTGGCCAGCTTAGACATAGGAATTTAGTACAACTAATTGGTTGGTGTCACAAGAAAAAGGACTTCCTCCTTATATATGAGTTCATGCAAAATGGTAGCTTAGATTCTCACCTATACCGTGGAAAAAGCGTATTGACATGGCAAATGAGGTACAACATTGCTATGGACTTGGCTTCAGCACTTTTGTACCTTCATGAAGAATGGGAACAATGTGTGCTTCATAGGGATGTCAAATCCAGCAACATTATGTTAGACAACAATTTCAATGCCAAGCTTGGGGATTTTGGATTGGCAAGGCTTGTGGATCATGAGAAAGGATCACAATCAGACACCACAATCATAGCTGGGACCATGGGGTACATAGCTCCTGAATACATCACAACAGGGAAGGCTACAAAGGAATCGGATATATACAGCTTTGGTATTGTTTCATTGGAATTAGCCAGTGGAAGAAAACCAGTAGATCTTAATGCCAAGGAGGATCAAATGGCTATATTTGATTGGGTTTGGGAGCTTTATAGATTAGAAAGGTTGCTTGAAGTAGCAGACACAAAACTTGGAGGTGCATTTGATGAGGAACAAATGGAACGTTTAGTGGTTATTGGTCTTTGGTGTGCCAATCCAAATTATTCGTTTAGGCCATCTGTAAGACAAGTGATTCAGGTGCTTAAACTTGAAGCTCCTTTACCGATTCTCCCGCCTCCCATTAAGAGTCCAAATCCTGATCCAGATTCTTCTGCCTCGGTGGCTTACACTTCTTCATAA

Protein sequence

>Msa1406820

MAISRVGLHEIGIIFLLQMMMITCVKPLSFNYQQGFKYDYVKLEGDASLLYSSIQLTSTSSYEDEAYSVGRVTCFKPLQLWDKTSRKLTDFTTQFSFVIFSNKTYFGDGLAFFFADPRLPLYYYLPVEFDTHQNDWDPPGTHVGINFNSLRSNITKPWFIDIRNKKAYHCKIEYNSSAHDLKVSFTENITNGEPSYSYLSYNVDLRDYLPERVIFGFSAATGYMFEMNKLLSWSFNSSLNQTSPFEASPIPTNPSPSPIPNVKISHKTDSKAGSIWVGVGVGVGIASSFLILGWFCISMWKRAKGNKEDSIFDLKMDDEFQKGTGPKKFCYNKLVSATNNFAEAEKIGQGGFGGVYKGYLKDIDTNVAIKRISRESKQGIKEYATEVKIIGQLRHRNLVQLIGWCHKKKDFLLIYEFMQNGSLDSHLYRGKSVLTWQMRYNIAMDLASALLYLHEEWEQCVLHRDVKSSNIMLDNNFNAKLGDFGLARLVDHEKGSQSDTTIIAGTMGYIAPEYITTGKATKESDIYSFGIVSLELASGRKPVDLNAKEDQMAIFDWVWELYRLERLLEVADTKLGGAFDEEQMERLVVIGLWCANPNYSFRPSVRQVIQVLKLEAPLPILPPPIKSPNPDPDSSASVAYTSS*