Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407280 | ACJ85716.1 | 74.138 | 58 | 15 | 0 | 127 | 184 | 140 | 197 | 5.27e-19 | 95.1 |
| Msa1407280 | ACJ85716.1 | 74.138 | 58 | 15 | 0 | 51 | 108 | 140 | 197 | 5.27e-19 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407280 | B7FLT3 | 74.138 | 58 | 15 | 0 | 127 | 184 | 140 | 197 | 2.52e-19 | 95.1 |
| Msa1407280 | B7FLT3 | 74.138 | 58 | 15 | 0 | 51 | 108 | 140 | 197 | 2.52e-19 | 95.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407280 | MtrunA17_Chr3g0111431 | 61.972 | 71 | 27 | 0 | 38 | 108 | 258 | 328 | 1.23e-22 | 94.7 |
| Msa1407280 | MtrunA17_Chr3g0111431 | 61.972 | 71 | 27 | 0 | 114 | 184 | 258 | 328 | 1.23e-22 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407280 | AT5G37790.1 | 66.667 | 48 | 16 | 0 | 61 | 108 | 313 | 360 | 8.37e-16 | 75.5 |
| Msa1407280 | AT5G37790.1 | 66.667 | 48 | 16 | 0 | 137 | 184 | 313 | 360 | 8.37e-16 | 75.5 |
| Msa1407280 | AT1G66460.2 | 64.583 | 48 | 17 | 0 | 61 | 108 | 258 | 305 | 3.54e-15 | 73.2 |
| Msa1407280 | AT1G66460.2 | 64.583 | 48 | 17 | 0 | 137 | 184 | 258 | 305 | 3.54e-15 | 73.2 |
| Msa1407280 | AT1G66460.3 | 64.583 | 48 | 17 | 0 | 61 | 108 | 258 | 305 | 4.47e-15 | 73.2 |
| Msa1407280 | AT1G66460.3 | 64.583 | 48 | 17 | 0 | 137 | 184 | 258 | 305 | 4.47e-15 | 73.2 |
| Msa1407280 | AT1G66460.1 | 64.583 | 48 | 17 | 0 | 61 | 108 | 231 | 278 | 4.51e-15 | 73.2 |
| Msa1407280 | AT1G66460.1 | 64.583 | 48 | 17 | 0 | 137 | 184 | 231 | 278 | 4.51e-15 | 73.2 |
Find 49 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCTCCGAAGATGCGATTT+AGG | 0.263115 | tig0023279:+64419 | Msa1407280:CDS |
| AGGCTCCGAAGATGCGATTT+AGG | 0.263115 | tig0023279:+64767 | Msa1407280:CDS |
| AGGCTCCGAAGATGCGATTT+AGG | 0.263115 | tig0023279:+65115 | Msa1407280:CDS |
| TAGCGTTCTTCTTTCTTCTA+AGG | 0.266618 | tig0023279:+64396 | Msa1407280:CDS |
| TAGCGTTCTTCTTTCTTCTA+AGG | 0.266618 | tig0023279:+64744 | Msa1407280:CDS |
| TAGCGTTCTTCTTTCTTCTA+AGG | 0.266618 | tig0023279:+65092 | Msa1407280:CDS |
| CTCTATGAACACATGTCTTT+CGG | 0.323757 | tig0023279:-64360 | None:intergenic |
| CTCTATGAACACATGTCTTT+CGG | 0.323757 | tig0023279:-64708 | None:intergenic |
| CTCTATGAACACATGTCTTT+CGG | 0.323757 | tig0023279:-65056 | None:intergenic |
| GTGAGGTACAAGGTTGCAAT+TGG | 0.401868 | tig0023279:+64649 | Msa1407280:CDS |
| GTGAGGTACAAGGTTGCAAT+TGG | 0.401868 | tig0023279:+64997 | Msa1407280:CDS |
| GCTATGGCTTATCTGCATAA+TGG | 0.414881 | tig0023279:+64334 | None:intergenic |
| GCTATGGCTTATCTGCATAA+TGG | 0.414881 | tig0023279:+64682 | Msa1407280:CDS |
| GCTATGGCTTATCTGCATAA+TGG | 0.414881 | tig0023279:+65030 | Msa1407280:CDS |
| CTAATCCTAAATCGCATCTT+CGG | 0.459435 | tig0023279:-64424 | None:intergenic |
| CTAATCCTAAATCGCATCTT+CGG | 0.459435 | tig0023279:-64772 | None:intergenic |
| CTAATCCTAAATCGCATCTT+CGG | 0.459435 | tig0023279:-65120 | None:intergenic |
| TACATGGACTTGAACACCTT+CGG | 0.469697 | tig0023279:+64448 | Msa1407280:CDS |
| TACATGGACTTGAACACCTT+CGG | 0.469697 | tig0023279:+64796 | Msa1407280:CDS |
| TACATGGACTTGAACACCTT+CGG | 0.469697 | tig0023279:+65144 | Msa1407280:CDS |
| GAAGAAAGAAGAACGCTAAA+GGG | 0.478121 | tig0023279:-64391 | None:intergenic |
| GAAGAAAGAAGAACGCTAAA+GGG | 0.478121 | tig0023279:-64739 | None:intergenic |
| GAAGAAAGAAGAACGCTAAA+GGG | 0.478121 | tig0023279:-65087 | None:intergenic |
| CGTTCTTCTTTCTTCTAAGG+AGG | 0.494079 | tig0023279:+64399 | Msa1407280:CDS |
| CGTTCTTCTTTCTTCTAAGG+AGG | 0.494079 | tig0023279:+64747 | Msa1407280:CDS |
| CGTTCTTCTTTCTTCTAAGG+AGG | 0.494079 | tig0023279:+65095 | Msa1407280:CDS |
| AGAAGAAAGAAGAACGCTAA+AGG | 0.495359 | tig0023279:-64392 | None:intergenic |
| AGAAGAAAGAAGAACGCTAA+AGG | 0.495359 | tig0023279:-64740 | None:intergenic |
| AGAAGAAAGAAGAACGCTAA+AGG | 0.495359 | tig0023279:-65088 | None:intergenic |
| GCGATTTAGGATTAGCTACA+TGG | 0.495450 | tig0023279:+64432 | Msa1407280:CDS |
| GCGATTTAGGATTAGCTACA+TGG | 0.495450 | tig0023279:+64780 | Msa1407280:CDS |
| GCGATTTAGGATTAGCTACA+TGG | 0.495450 | tig0023279:+65128 | Msa1407280:CDS |
| GTGAGGAAGAACGGTAGGAA+TGG | 0.498921 | tig0023279:+64604 | Msa1407280:CDS |
| GTGAGGAAGAACGGTAGGAA+TGG | 0.498921 | tig0023279:+64952 | Msa1407280:CDS |
| AATTGGGATTGCAGAAGCTA+TGG | 0.512027 | tig0023279:+64666 | Msa1407280:CDS |
| AATTGGGATTGCAGAAGCTA+TGG | 0.512027 | tig0023279:+65014 | Msa1407280:CDS |
| TGAGGTACAAGGTTGCAATT+GGG | 0.514337 | tig0023279:+64650 | Msa1407280:CDS |
| TGAGGTACAAGGTTGCAATT+GGG | 0.514337 | tig0023279:+64998 | Msa1407280:CDS |
| CCCTTGGTCTGTGAGGTACA+AGG | 0.541959 | tig0023279:+64639 | Msa1407280:CDS |
| CCCTTGGTCTGTGAGGTACA+AGG | 0.541959 | tig0023279:+64987 | Msa1407280:CDS |
| ATGGTAGTTCAACACTCCCT+TGG | 0.561530 | tig0023279:+64623 | Msa1407280:CDS |
| ATGGTAGTTCAACACTCCCT+TGG | 0.561530 | tig0023279:+64971 | Msa1407280:CDS |
| ACCTTGTACCTCACAGACCA+AGG | 0.588300 | tig0023279:-64640 | None:intergenic |
| ACCTTGTACCTCACAGACCA+AGG | 0.588300 | tig0023279:-64988 | None:intergenic |
| CAACACTCCCTTGGTCTGTG+AGG | 0.663391 | tig0023279:+64632 | Msa1407280:CDS |
| CAACACTCCCTTGGTCTGTG+AGG | 0.663391 | tig0023279:+64980 | Msa1407280:CDS |
| TTACAAAGGAAAGGAACCGA+AGG | 0.678032 | tig0023279:-65160 | None:intergenic |
| CCTTGTACCTCACAGACCAA+GGG | 0.686766 | tig0023279:-64639 | None:intergenic |
| CCTTGTACCTCACAGACCAA+GGG | 0.686766 | tig0023279:-64987 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ATAACCAAATGTTCCTTTGA+CGG | - | tig0023279:64492-64511 | None:intergenic | 30.0% | |
| CAAAGGAACATTTGGTTATT+TGG | + | tig0023279:64493-64512 | Msa1407280:intron | 30.0% | |
| !! | TATGTTTTTGTGAGGAAGAA+CGG | + | tig0023279:64595-64614 | Msa1407280:CDS | 30.0% |
| ATAACCAAATGTTCCTTTGA+CGG | - | tig0023279:64492-64511 | None:intergenic | 30.0% | |
| CAAAGGAACATTTGGTTATT+TGG | + | tig0023279:64493-64512 | Msa1407280:intron | 30.0% | |
| !! | TATGTTTTTGTGAGGAAGAA+CGG | + | tig0023279:64595-64614 | Msa1407280:CDS | 30.0% |
| ATAACCAAATGTTCCTTTGA+CGG | - | tig0023279:64492-64511 | None:intergenic | 30.0% | |
| CAAAGGAACATTTGGTTATT+TGG | + | tig0023279:64493-64512 | Msa1407280:intron | 30.0% | |
| !! | TATGTTTTTGTGAGGAAGAA+CGG | + | tig0023279:64595-64614 | Msa1407280:CDS | 30.0% |
| ATAACCAAATGTTCCTTTGA+CGG | - | tig0023279:64492-64511 | None:intergenic | 30.0% | |
| CAAAGGAACATTTGGTTATT+TGG | + | tig0023279:64493-64512 | Msa1407280:intron | 30.0% | |
| !! | TATGTTTTTGTGAGGAAGAA+CGG | + | tig0023279:64595-64614 | Msa1407280:CDS | 30.0% |
| CTCTATGAACACATGTCTTT+CGG | - | tig0023279:64363-64382 | None:intergenic | 35.0% | |
| GAAGAAAGAAGAACGCTAAA+GGG | - | tig0023279:64394-64413 | None:intergenic | 35.0% | |
| AGAAGAAAGAAGAACGCTAA+AGG | - | tig0023279:64395-64414 | None:intergenic | 35.0% | |
| TAGCGTTCTTCTTTCTTCTA+AGG | + | tig0023279:64396-64415 | Msa1407280:CDS | 35.0% | |
| CTAATCCTAAATCGCATCTT+CGG | - | tig0023279:64427-64446 | None:intergenic | 35.0% | |
| ! | TTGACGGTTTTACAAAGGAA+AGG | - | tig0023279:64476-64495 | None:intergenic | 35.0% |
| TTCCTTTGTAAAACCGTCAA+AGG | + | tig0023279:64476-64495 | Msa1407280:intron | 35.0% | |
| ! | TTCCTTTGACGGTTTTACAA+AGG | - | tig0023279:64481-64500 | None:intergenic | 35.0% |
| AAAACCGTCAAAGGAACATT+TGG | + | tig0023279:64485-64504 | Msa1407280:intron | 35.0% | |
| CTCTATGAACACATGTCTTT+CGG | - | tig0023279:64363-64382 | None:intergenic | 35.0% | |
| GAAGAAAGAAGAACGCTAAA+GGG | - | tig0023279:64394-64413 | None:intergenic | 35.0% | |
| AGAAGAAAGAAGAACGCTAA+AGG | - | tig0023279:64395-64414 | None:intergenic | 35.0% | |
| TAGCGTTCTTCTTTCTTCTA+AGG | + | tig0023279:64396-64415 | Msa1407280:CDS | 35.0% | |
| CTAATCCTAAATCGCATCTT+CGG | - | tig0023279:64427-64446 | None:intergenic | 35.0% | |
| ! | TTGACGGTTTTACAAAGGAA+AGG | - | tig0023279:64476-64495 | None:intergenic | 35.0% |
| TTCCTTTGTAAAACCGTCAA+AGG | + | tig0023279:64476-64495 | Msa1407280:intron | 35.0% | |
| ! | TTCCTTTGACGGTTTTACAA+AGG | - | tig0023279:64481-64500 | None:intergenic | 35.0% |
| AAAACCGTCAAAGGAACATT+TGG | + | tig0023279:64485-64504 | Msa1407280:intron | 35.0% | |
| CTCTATGAACACATGTCTTT+CGG | - | tig0023279:64363-64382 | None:intergenic | 35.0% | |
| GAAGAAAGAAGAACGCTAAA+GGG | - | tig0023279:64394-64413 | None:intergenic | 35.0% | |
| AGAAGAAAGAAGAACGCTAA+AGG | - | tig0023279:64395-64414 | None:intergenic | 35.0% | |
| TAGCGTTCTTCTTTCTTCTA+AGG | + | tig0023279:64396-64415 | Msa1407280:CDS | 35.0% | |
| CTAATCCTAAATCGCATCTT+CGG | - | tig0023279:64427-64446 | None:intergenic | 35.0% | |
| CTCTATGAACACATGTCTTT+CGG | - | tig0023279:64363-64382 | None:intergenic | 35.0% | |
| GAAGAAAGAAGAACGCTAAA+GGG | - | tig0023279:64394-64413 | None:intergenic | 35.0% | |
| AGAAGAAAGAAGAACGCTAA+AGG | - | tig0023279:64395-64414 | None:intergenic | 35.0% | |
| TAGCGTTCTTCTTTCTTCTA+AGG | + | tig0023279:64396-64415 | Msa1407280:CDS | 35.0% | |
| CTAATCCTAAATCGCATCTT+CGG | - | tig0023279:64427-64446 | None:intergenic | 35.0% | |
| ! | TTGACGGTTTTACAAAGGAA+AGG | - | tig0023279:64476-64495 | None:intergenic | 35.0% |
| TTCCTTTGTAAAACCGTCAA+AGG | + | tig0023279:64476-64495 | Msa1407280:intron | 35.0% | |
| ! | TTCCTTTGACGGTTTTACAA+AGG | - | tig0023279:64481-64500 | None:intergenic | 35.0% |
| AAAACCGTCAAAGGAACATT+TGG | + | tig0023279:64485-64504 | Msa1407280:intron | 35.0% | |
| CTCTATGAACACATGTCTTT+CGG | - | tig0023279:64363-64382 | None:intergenic | 35.0% | |
| GAAGAAAGAAGAACGCTAAA+GGG | - | tig0023279:64394-64413 | None:intergenic | 35.0% | |
| AGAAGAAAGAAGAACGCTAA+AGG | - | tig0023279:64395-64414 | None:intergenic | 35.0% | |
| TAGCGTTCTTCTTTCTTCTA+AGG | + | tig0023279:64396-64415 | Msa1407280:CDS | 35.0% | |
| CTAATCCTAAATCGCATCTT+CGG | - | tig0023279:64427-64446 | None:intergenic | 35.0% | |
| ! | TTGACGGTTTTACAAAGGAA+AGG | - | tig0023279:64476-64495 | None:intergenic | 35.0% |
| TTCCTTTGTAAAACCGTCAA+AGG | + | tig0023279:64476-64495 | Msa1407280:intron | 35.0% | |
| ! | TTCCTTTGACGGTTTTACAA+AGG | - | tig0023279:64481-64500 | None:intergenic | 35.0% |
| AAAACCGTCAAAGGAACATT+TGG | + | tig0023279:64485-64504 | Msa1407280:intron | 35.0% | |
| CTCTATGAACACATGTCTTT+CGG | - | tig0023279:64363-64382 | None:intergenic | 35.0% | |
| GAAGAAAGAAGAACGCTAAA+GGG | - | tig0023279:64394-64413 | None:intergenic | 35.0% | |
| AGAAGAAAGAAGAACGCTAA+AGG | - | tig0023279:64395-64414 | None:intergenic | 35.0% | |
| TAGCGTTCTTCTTTCTTCTA+AGG | + | tig0023279:64396-64415 | Msa1407280:CDS | 35.0% | |
| CTAATCCTAAATCGCATCTT+CGG | - | tig0023279:64427-64446 | None:intergenic | 35.0% | |
| ! | CGTTCTTCTTTCTTCTAAGG+AGG | + | tig0023279:64399-64418 | Msa1407280:CDS | 40.0% |
| !! | GCGATTTAGGATTAGCTACA+TGG | + | tig0023279:64432-64451 | Msa1407280:CDS | 40.0% |
| TACATGGACTTGAACACCTT+CGG | + | tig0023279:64448-64467 | Msa1407280:CDS | 40.0% | |
| TTACAAAGGAAAGGAACCGA+AGG | - | tig0023279:64467-64486 | None:intergenic | 40.0% | |
| TTTCCCACGTTGGAAATACT+CGG | - | tig0023279:64522-64541 | None:intergenic | 40.0% | |
| ATTCTGATACTTTCCCACGT+TGG | - | tig0023279:64532-64551 | None:intergenic | 40.0% | |
| ACAAAAACATACCCTCCTAG+GGG | - | tig0023279:64586-64605 | None:intergenic | 40.0% | |
| CACAAAAACATACCCTCCTA+GGG | - | tig0023279:64587-64606 | None:intergenic | 40.0% | |
| TCACAAAAACATACCCTCCT+AGG | - | tig0023279:64588-64607 | None:intergenic | 40.0% | |
| !! | TAGGAGGGTATGTTTTTGTG+AGG | + | tig0023279:64587-64606 | Msa1407280:intron | 40.0% |
| ! | TTTTTGTGAGGAAGAACGGT+AGG | + | tig0023279:64599-64618 | Msa1407280:CDS | 40.0% |
| TGAGGTACAAGGTTGCAATT+GGG | + | tig0023279:64650-64669 | Msa1407280:CDS | 40.0% | |
| AATTGGGATTGCAGAAGCTA+TGG | + | tig0023279:64666-64685 | Msa1407280:CDS | 40.0% | |
| GCTATGGCTTATCTGCATAA+TGG | + | tig0023279:64682-64701 | Msa1407280:CDS | 40.0% | |
| ! | CGTTCTTCTTTCTTCTAAGG+AGG | + | tig0023279:64399-64418 | Msa1407280:CDS | 40.0% |
| !! | GCGATTTAGGATTAGCTACA+TGG | + | tig0023279:64432-64451 | Msa1407280:CDS | 40.0% |
| TACATGGACTTGAACACCTT+CGG | + | tig0023279:64448-64467 | Msa1407280:CDS | 40.0% | |
| TTACAAAGGAAAGGAACCGA+AGG | - | tig0023279:64467-64486 | None:intergenic | 40.0% | |
| TTTCCCACGTTGGAAATACT+CGG | - | tig0023279:64522-64541 | None:intergenic | 40.0% | |
| ATTCTGATACTTTCCCACGT+TGG | - | tig0023279:64532-64551 | None:intergenic | 40.0% | |
| ACAAAAACATACCCTCCTAG+GGG | - | tig0023279:64586-64605 | None:intergenic | 40.0% | |
| CACAAAAACATACCCTCCTA+GGG | - | tig0023279:64587-64606 | None:intergenic | 40.0% | |
| TCACAAAAACATACCCTCCT+AGG | - | tig0023279:64588-64607 | None:intergenic | 40.0% | |
| !! | TAGGAGGGTATGTTTTTGTG+AGG | + | tig0023279:64587-64606 | Msa1407280:intron | 40.0% |
| ! | TTTTTGTGAGGAAGAACGGT+AGG | + | tig0023279:64599-64618 | Msa1407280:CDS | 40.0% |
| TGAGGTACAAGGTTGCAATT+GGG | + | tig0023279:64650-64669 | Msa1407280:CDS | 40.0% | |
| AATTGGGATTGCAGAAGCTA+TGG | + | tig0023279:64666-64685 | Msa1407280:CDS | 40.0% | |
| GCTATGGCTTATCTGCATAA+TGG | + | tig0023279:64682-64701 | Msa1407280:CDS | 40.0% | |
| ! | CGTTCTTCTTTCTTCTAAGG+AGG | + | tig0023279:64399-64418 | Msa1407280:CDS | 40.0% |
| !! | GCGATTTAGGATTAGCTACA+TGG | + | tig0023279:64432-64451 | Msa1407280:CDS | 40.0% |
| TACATGGACTTGAACACCTT+CGG | + | tig0023279:64448-64467 | Msa1407280:CDS | 40.0% | |
| TTACAAAGGAAAGGAACCGA+AGG | - | tig0023279:64467-64486 | None:intergenic | 40.0% | |
| CGGTTCCTTTCCTTTGTAAA+TGG | + | tig0023279:64468-64487 | Msa1407280:intron | 40.0% | |
| ! | CGTTCTTCTTTCTTCTAAGG+AGG | + | tig0023279:64399-64418 | Msa1407280:CDS | 40.0% |
| !! | GCGATTTAGGATTAGCTACA+TGG | + | tig0023279:64432-64451 | Msa1407280:CDS | 40.0% |
| TACATGGACTTGAACACCTT+CGG | + | tig0023279:64448-64467 | Msa1407280:CDS | 40.0% | |
| TTACAAAGGAAAGGAACCGA+AGG | - | tig0023279:64467-64486 | None:intergenic | 40.0% | |
| TTTCCCACGTTGGAAATACT+CGG | - | tig0023279:64522-64541 | None:intergenic | 40.0% | |
| ATTCTGATACTTTCCCACGT+TGG | - | tig0023279:64532-64551 | None:intergenic | 40.0% | |
| ACAAAAACATACCCTCCTAG+GGG | - | tig0023279:64586-64605 | None:intergenic | 40.0% | |
| CACAAAAACATACCCTCCTA+GGG | - | tig0023279:64587-64606 | None:intergenic | 40.0% | |
| TCACAAAAACATACCCTCCT+AGG | - | tig0023279:64588-64607 | None:intergenic | 40.0% | |
| !! | TAGGAGGGTATGTTTTTGTG+AGG | + | tig0023279:64587-64606 | Msa1407280:intron | 40.0% |
| ! | TTTTTGTGAGGAAGAACGGT+AGG | + | tig0023279:64599-64618 | Msa1407280:CDS | 40.0% |
| TGAGGTACAAGGTTGCAATT+GGG | + | tig0023279:64650-64669 | Msa1407280:CDS | 40.0% | |
| AATTGGGATTGCAGAAGCTA+TGG | + | tig0023279:64666-64685 | Msa1407280:CDS | 40.0% | |
| GCTATGGCTTATCTGCATAA+TGG | + | tig0023279:64682-64701 | Msa1407280:CDS | 40.0% | |
| ! | CGTTCTTCTTTCTTCTAAGG+AGG | + | tig0023279:64399-64418 | Msa1407280:CDS | 40.0% |
| !! | GCGATTTAGGATTAGCTACA+TGG | + | tig0023279:64432-64451 | Msa1407280:CDS | 40.0% |
| TACATGGACTTGAACACCTT+CGG | + | tig0023279:64448-64467 | Msa1407280:CDS | 40.0% | |
| TTACAAAGGAAAGGAACCGA+AGG | - | tig0023279:64467-64486 | None:intergenic | 40.0% | |
| TTTCCCACGTTGGAAATACT+CGG | - | tig0023279:64522-64541 | None:intergenic | 40.0% | |
| ATTCTGATACTTTCCCACGT+TGG | - | tig0023279:64532-64551 | None:intergenic | 40.0% | |
| ACAAAAACATACCCTCCTAG+GGG | - | tig0023279:64586-64605 | None:intergenic | 40.0% | |
| CACAAAAACATACCCTCCTA+GGG | - | tig0023279:64587-64606 | None:intergenic | 40.0% | |
| TCACAAAAACATACCCTCCT+AGG | - | tig0023279:64588-64607 | None:intergenic | 40.0% | |
| !! | TAGGAGGGTATGTTTTTGTG+AGG | + | tig0023279:64587-64606 | Msa1407280:intron | 40.0% |
| ! | TTTTTGTGAGGAAGAACGGT+AGG | + | tig0023279:64599-64618 | Msa1407280:CDS | 40.0% |
| TGAGGTACAAGGTTGCAATT+GGG | + | tig0023279:64650-64669 | Msa1407280:CDS | 40.0% | |
| AATTGGGATTGCAGAAGCTA+TGG | + | tig0023279:64666-64685 | Msa1407280:CDS | 40.0% | |
| GCTATGGCTTATCTGCATAA+TGG | + | tig0023279:64682-64701 | Msa1407280:CDS | 40.0% | |
| ! | CGTTCTTCTTTCTTCTAAGG+AGG | + | tig0023279:64399-64418 | Msa1407280:CDS | 40.0% |
| !! | GCGATTTAGGATTAGCTACA+TGG | + | tig0023279:64432-64451 | Msa1407280:CDS | 40.0% |
| TACATGGACTTGAACACCTT+CGG | + | tig0023279:64448-64467 | Msa1407280:CDS | 40.0% | |
| TTACAAAGGAAAGGAACCGA+AGG | - | tig0023279:64467-64486 | None:intergenic | 40.0% | |
| TTCCCACGTTGGAAATACTC+GGG | - | tig0023279:64521-64540 | None:intergenic | 45.0% | |
| ATGGTAGTTCAACACTCCCT+TGG | + | tig0023279:64623-64642 | Msa1407280:CDS | 45.0% | |
| GTGAGGTACAAGGTTGCAAT+TGG | + | tig0023279:64649-64668 | Msa1407280:CDS | 45.0% | |
| TTCCCACGTTGGAAATACTC+GGG | - | tig0023279:64521-64540 | None:intergenic | 45.0% | |
| ATGGTAGTTCAACACTCCCT+TGG | + | tig0023279:64623-64642 | Msa1407280:CDS | 45.0% | |
| GTGAGGTACAAGGTTGCAAT+TGG | + | tig0023279:64649-64668 | Msa1407280:CDS | 45.0% | |
| TTCCCACGTTGGAAATACTC+GGG | - | tig0023279:64521-64540 | None:intergenic | 45.0% | |
| ATGGTAGTTCAACACTCCCT+TGG | + | tig0023279:64623-64642 | Msa1407280:CDS | 45.0% | |
| GTGAGGTACAAGGTTGCAAT+TGG | + | tig0023279:64649-64668 | Msa1407280:CDS | 45.0% | |
| TTCCCACGTTGGAAATACTC+GGG | - | tig0023279:64521-64540 | None:intergenic | 45.0% | |
| ATGGTAGTTCAACACTCCCT+TGG | + | tig0023279:64623-64642 | Msa1407280:CDS | 45.0% | |
| GTGAGGTACAAGGTTGCAAT+TGG | + | tig0023279:64649-64668 | Msa1407280:CDS | 45.0% | |
| AGGCTCCGAAGATGCGATTT+AGG | + | tig0023279:64419-64438 | Msa1407280:CDS | 50.0% | |
| CTCCCGAGTATTTCCAACGT+GGG | + | tig0023279:64516-64535 | Msa1407280:intron | 50.0% | |
| GTGAGGAAGAACGGTAGGAA+TGG | + | tig0023279:64604-64623 | Msa1407280:CDS | 50.0% | |
| CCTTGTACCTCACAGACCAA+GGG | - | tig0023279:64642-64661 | None:intergenic | 50.0% | |
| ACCTTGTACCTCACAGACCA+AGG | - | tig0023279:64643-64662 | None:intergenic | 50.0% | |
| AGGCTCCGAAGATGCGATTT+AGG | + | tig0023279:64419-64438 | Msa1407280:CDS | 50.0% | |
| CTCCCGAGTATTTCCAACGT+GGG | + | tig0023279:64516-64535 | Msa1407280:intron | 50.0% | |
| GTGAGGAAGAACGGTAGGAA+TGG | + | tig0023279:64604-64623 | Msa1407280:CDS | 50.0% | |
| CCTTGTACCTCACAGACCAA+GGG | - | tig0023279:64642-64661 | None:intergenic | 50.0% | |
| ACCTTGTACCTCACAGACCA+AGG | - | tig0023279:64643-64662 | None:intergenic | 50.0% | |
| AGGCTCCGAAGATGCGATTT+AGG | + | tig0023279:64419-64438 | Msa1407280:CDS | 50.0% | |
| AGGCTCCGAAGATGCGATTT+AGG | + | tig0023279:64419-64438 | Msa1407280:CDS | 50.0% | |
| CTCCCGAGTATTTCCAACGT+GGG | + | tig0023279:64516-64535 | Msa1407280:intron | 50.0% | |
| GTGAGGAAGAACGGTAGGAA+TGG | + | tig0023279:64604-64623 | Msa1407280:CDS | 50.0% | |
| CCTTGTACCTCACAGACCAA+GGG | - | tig0023279:64642-64661 | None:intergenic | 50.0% | |
| ACCTTGTACCTCACAGACCA+AGG | - | tig0023279:64643-64662 | None:intergenic | 50.0% | |
| AGGCTCCGAAGATGCGATTT+AGG | + | tig0023279:64419-64438 | Msa1407280:CDS | 50.0% | |
| CTCCCGAGTATTTCCAACGT+GGG | + | tig0023279:64516-64535 | Msa1407280:intron | 50.0% | |
| GTGAGGAAGAACGGTAGGAA+TGG | + | tig0023279:64604-64623 | Msa1407280:CDS | 50.0% | |
| CCTTGTACCTCACAGACCAA+GGG | - | tig0023279:64642-64661 | None:intergenic | 50.0% | |
| ACCTTGTACCTCACAGACCA+AGG | - | tig0023279:64643-64662 | None:intergenic | 50.0% | |
| AGGCTCCGAAGATGCGATTT+AGG | + | tig0023279:64419-64438 | Msa1407280:CDS | 50.0% | |
| GCTCCCGAGTATTTCCAACG+TGG | + | tig0023279:64515-64534 | Msa1407280:intron | 55.0% | |
| CTAGGGGTCAATACTCGGGA+GGG | - | tig0023279:64570-64589 | None:intergenic | 55.0% | |
| CCTCCTAGGGGTCAATACTC+GGG | - | tig0023279:64574-64593 | None:intergenic | 55.0% | |
| CCCTCCTAGGGGTCAATACT+CGG | - | tig0023279:64575-64594 | None:intergenic | 55.0% | |
| !! | CCGAGTATTGACCCCTAGGA+GGG | + | tig0023279:64572-64591 | Msa1407280:intron | 55.0% |
| CAACACTCCCTTGGTCTGTG+AGG | + | tig0023279:64632-64651 | Msa1407280:CDS | 55.0% | |
| CCCTTGGTCTGTGAGGTACA+AGG | + | tig0023279:64639-64658 | Msa1407280:CDS | 55.0% | |
| GCTCCCGAGTATTTCCAACG+TGG | + | tig0023279:64515-64534 | Msa1407280:intron | 55.0% | |
| CTAGGGGTCAATACTCGGGA+GGG | - | tig0023279:64570-64589 | None:intergenic | 55.0% | |
| CCTCCTAGGGGTCAATACTC+GGG | - | tig0023279:64574-64593 | None:intergenic | 55.0% | |
| CCCTCCTAGGGGTCAATACT+CGG | - | tig0023279:64575-64594 | None:intergenic | 55.0% | |
| !! | CCGAGTATTGACCCCTAGGA+GGG | + | tig0023279:64572-64591 | Msa1407280:intron | 55.0% |
| CAACACTCCCTTGGTCTGTG+AGG | + | tig0023279:64632-64651 | Msa1407280:CDS | 55.0% | |
| CCCTTGGTCTGTGAGGTACA+AGG | + | tig0023279:64639-64658 | Msa1407280:CDS | 55.0% | |
| GCTCCCGAGTATTTCCAACG+TGG | + | tig0023279:64515-64534 | Msa1407280:intron | 55.0% | |
| CTAGGGGTCAATACTCGGGA+GGG | - | tig0023279:64570-64589 | None:intergenic | 55.0% | |
| CCTCCTAGGGGTCAATACTC+GGG | - | tig0023279:64574-64593 | None:intergenic | 55.0% | |
| CCCTCCTAGGGGTCAATACT+CGG | - | tig0023279:64575-64594 | None:intergenic | 55.0% | |
| !! | CCGAGTATTGACCCCTAGGA+GGG | + | tig0023279:64572-64591 | Msa1407280:intron | 55.0% |
| CAACACTCCCTTGGTCTGTG+AGG | + | tig0023279:64632-64651 | Msa1407280:CDS | 55.0% | |
| CCCTTGGTCTGTGAGGTACA+AGG | + | tig0023279:64639-64658 | Msa1407280:CDS | 55.0% | |
| GCTCCCGAGTATTTCCAACG+TGG | + | tig0023279:64515-64534 | Msa1407280:intron | 55.0% | |
| CTAGGGGTCAATACTCGGGA+GGG | - | tig0023279:64570-64589 | None:intergenic | 55.0% | |
| CCTCCTAGGGGTCAATACTC+GGG | - | tig0023279:64574-64593 | None:intergenic | 55.0% | |
| CCCTCCTAGGGGTCAATACT+CGG | - | tig0023279:64575-64594 | None:intergenic | 55.0% | |
| !! | CCGAGTATTGACCCCTAGGA+GGG | + | tig0023279:64572-64591 | Msa1407280:intron | 55.0% |
| CAACACTCCCTTGGTCTGTG+AGG | + | tig0023279:64632-64651 | Msa1407280:CDS | 55.0% | |
| CCCTTGGTCTGTGAGGTACA+AGG | + | tig0023279:64639-64658 | Msa1407280:CDS | 55.0% | |
| CCTAGGGGTCAATACTCGGG+AGG | - | tig0023279:64571-64590 | None:intergenic | 60.0% | |
| !! | CCTCCCGAGTATTGACCCCT+AGG | + | tig0023279:64568-64587 | Msa1407280:intron | 60.0% |
| !! | CCCGAGTATTGACCCCTAGG+AGG | + | tig0023279:64571-64590 | Msa1407280:intron | 60.0% |
| CCTAGGGGTCAATACTCGGG+AGG | - | tig0023279:64571-64590 | None:intergenic | 60.0% | |
| !! | CCTCCCGAGTATTGACCCCT+AGG | + | tig0023279:64568-64587 | Msa1407280:intron | 60.0% |
| !! | CCCGAGTATTGACCCCTAGG+AGG | + | tig0023279:64571-64590 | Msa1407280:intron | 60.0% |
| CCTAGGGGTCAATACTCGGG+AGG | - | tig0023279:64571-64590 | None:intergenic | 60.0% | |
| !! | CCTCCCGAGTATTGACCCCT+AGG | + | tig0023279:64568-64587 | Msa1407280:intron | 60.0% |
| !! | CCCGAGTATTGACCCCTAGG+AGG | + | tig0023279:64571-64590 | Msa1407280:intron | 60.0% |
| CCTAGGGGTCAATACTCGGG+AGG | - | tig0023279:64571-64590 | None:intergenic | 60.0% | |
| !! | CCTCCCGAGTATTGACCCCT+AGG | + | tig0023279:64568-64587 | Msa1407280:intron | 60.0% |
| !! | CCCGAGTATTGACCCCTAGG+AGG | + | tig0023279:64571-64590 | Msa1407280:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023279 | gene | 64337 | 65182 | 64337 | ID=Msa1407280;Name=Msa1407280 |
| tig0023279 | mRNA | 64337 | 65182 | 64337 | ID=Msa1407280-mRNA-1;Parent=Msa1407280;Name=Msa1407280-mRNA-1;_AED=0.36;_eAED=0.53;_QI=0|0|0|1|1|1|3|0|201 |
| tig0023279 | exon | 64337 | 64469 | 64337 | ID=Msa1407280-mRNA-1:exon:25004;Parent=Msa1407280-mRNA-1 |
| tig0023279 | exon | 64590 | 64817 | 64590 | ID=Msa1407280-mRNA-1:exon:25005;Parent=Msa1407280-mRNA-1 |
| tig0023279 | exon | 64938 | 65182 | 64938 | ID=Msa1407280-mRNA-1:exon:25006;Parent=Msa1407280-mRNA-1 |
| tig0023279 | CDS | 64337 | 64469 | 64337 | ID=Msa1407280-mRNA-1:cds;Parent=Msa1407280-mRNA-1 |
| tig0023279 | CDS | 64590 | 64817 | 64590 | ID=Msa1407280-mRNA-1:cds;Parent=Msa1407280-mRNA-1 |
| tig0023279 | CDS | 64938 | 65182 | 64938 | ID=Msa1407280-mRNA-1:cds;Parent=Msa1407280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
