Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408480 | XP_024626574.1 | 55.709 | 289 | 35 | 6 | 1 | 250 | 1 | 235 | 2.59e-80 | 261 |
| Msa1408480 | XP_024626574.1 | 55.709 | 289 | 35 | 6 | 251 | 500 | 1 | 235 | 2.59e-80 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408480 | A0A072TYR1 | 56.055 | 289 | 39 | 6 | 1 | 250 | 1 | 240 | 1.77e-79 | 265 |
| Msa1408480 | A0A072TYR1 | 56.055 | 289 | 39 | 6 | 251 | 500 | 1 | 240 | 1.77e-79 | 265 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1408480 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408480 | MtrunA17_Chr2g0287651 | 72.826 | 92 | 25 | 0 | 159 | 250 | 104 | 195 | 1.18e-37 | 147 |
| Msa1408480 | MtrunA17_Chr2g0287651 | 72.826 | 92 | 25 | 0 | 409 | 500 | 104 | 195 | 1.18e-37 | 147 |
| Msa1408480 | MtrunA17_Chr1g0203051 | 36.957 | 92 | 58 | 0 | 159 | 250 | 108 | 199 | 2.87e-15 | 78.6 |
| Msa1408480 | MtrunA17_Chr1g0203051 | 36.957 | 92 | 58 | 0 | 409 | 500 | 108 | 199 | 2.87e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAACGACTTTACGGATTT+TGG | 0.123490 | tig0023386:-10717 | Msa1408480:CDS |
| AACAACGACTTTACGGATTT+TGG | 0.123490 | tig0023386:-14419 | Msa1408480:CDS |
| TGTTCATTACAGACCCAAAA+AGG | 0.267321 | tig0023386:-13689 | Msa1408480:CDS |
| TGTTCATTACAGACCCAAAA+AGG | 0.267321 | tig0023386:-9987 | Msa1408480:CDS |
| TGCATTTACACCCTGTTTAT+CGG | 0.290641 | tig0023386:-13603 | Msa1408480:CDS |
| TGCATTTACACCCTGTTTAT+CGG | 0.290641 | tig0023386:-9901 | Msa1408480:CDS |
| AAACAACAACAACGACTTTA+CGG | 0.323300 | tig0023386:-10724 | Msa1408480:CDS |
| AAACAACAACAACGACTTTA+CGG | 0.323300 | tig0023386:-14426 | Msa1408480:CDS |
| CTGTTAGGAAGAGTGATATT+AGG | 0.340554 | tig0023386:-10150 | Msa1408480:intron |
| CTGTTAGGAAGAGTGATATT+AGG | 0.340554 | tig0023386:-13852 | Msa1408480:intron |
| AGTGATGATGGTGGTTGTTT+TGG | 0.347116 | tig0023386:-10477 | Msa1408480:CDS |
| AGTGATGATGGTGGTTGTTT+TGG | 0.347116 | tig0023386:-14179 | Msa1408480:CDS |
| CATTGGTTGGAGTAGGTTCA+TGG | 0.373380 | tig0023386:+13629 | None:intergenic |
| CATTGGTTGGAGTAGGTTCA+TGG | 0.373380 | tig0023386:+9927 | None:intergenic |
| GATTATAATGCTGGTGATAA+AGG | 0.374171 | tig0023386:-10453 | Msa1408480:CDS |
| GATTATAATGCTGGTGATAA+AGG | 0.374171 | tig0023386:-14155 | Msa1408480:CDS |
| GGTACACCGGAACATGATTA+CGG | 0.407134 | tig0023386:-10696 | Msa1408480:CDS |
| GGTACACCGGAACATGATTA+CGG | 0.407134 | tig0023386:-14398 | Msa1408480:CDS |
| AGCATTTATCAAGGTTAGAT+AGG | 0.409294 | tig0023386:-10060 | Msa1408480:CDS |
| AGCATTTATCAAGGTTAGAT+AGG | 0.409294 | tig0023386:-13762 | Msa1408480:CDS |
| GAGAGAAGAAGCATTTATCA+AGG | 0.445750 | tig0023386:-10069 | Msa1408480:CDS |
| GAGAGAAGAAGCATTTATCA+AGG | 0.445750 | tig0023386:-13771 | Msa1408480:CDS |
| GATATTAGGCGCAATGTTAA+CGG | 0.449906 | tig0023386:-10136 | Msa1408480:CDS |
| GATATTAGGCGCAATGTTAA+CGG | 0.449906 | tig0023386:-13838 | Msa1408480:CDS |
| GTAGAACCGTAATCATGTTC+CGG | 0.465450 | tig0023386:+10690 | None:intergenic |
| GTAGAACCGTAATCATGTTC+CGG | 0.465450 | tig0023386:+14392 | None:intergenic |
| TAATGAACACGGAGCCTAGC+TGG | 0.466097 | tig0023386:+10001 | None:intergenic |
| TAATGAACACGGAGCCTAGC+TGG | 0.466097 | tig0023386:+13703 | None:intergenic |
| GAAACATATCCGATCATTGT+TGG | 0.469215 | tig0023386:-10648 | Msa1408480:CDS |
| GAAACATATCCGATCATTGT+TGG | 0.469215 | tig0023386:-14350 | Msa1408480:CDS |
| ATGTAGTTGTTGGTGAGAAA+TGG | 0.471977 | tig0023386:-10278 | Msa1408480:intron |
| ATGTAGTTGTTGGTGAGAAA+TGG | 0.471977 | tig0023386:-13980 | Msa1408480:intron |
| AAACATATCCGATCATTGTT+GGG | 0.491804 | tig0023386:-10647 | Msa1408480:CDS |
| AAACATATCCGATCATTGTT+GGG | 0.491804 | tig0023386:-14349 | Msa1408480:CDS |
| GATGAGCGGTATGATGAAAC+TGG | 0.493455 | tig0023386:-10510 | Msa1408480:CDS |
| GATGAGCGGTATGATGAAAC+TGG | 0.493455 | tig0023386:-14212 | Msa1408480:CDS |
| GCAGTATGTATGCAACAAGC+AGG | 0.502107 | tig0023386:-10098 | Msa1408480:CDS |
| GCAGTATGTATGCAACAAGC+AGG | 0.502107 | tig0023386:-13800 | Msa1408480:CDS |
| GAAGATGATGATGTAGTTGT+TGG | 0.505754 | tig0023386:-10288 | Msa1408480:CDS |
| GAAGATGATGATGTAGTTGT+TGG | 0.505754 | tig0023386:-13990 | Msa1408480:CDS |
| CCGATCATTGTTGGGAGTGG+TGG | 0.525336 | tig0023386:-10639 | Msa1408480:CDS |
| CCGATCATTGTTGGGAGTGG+TGG | 0.525336 | tig0023386:-14341 | Msa1408480:CDS |
| CCACCACTCCCAACAATGAT+CGG | 0.545431 | tig0023386:+10639 | None:intergenic |
| CCACCACTCCCAACAATGAT+CGG | 0.545431 | tig0023386:+14341 | None:intergenic |
| TGTAAATGCACAACATTGGT+TGG | 0.560698 | tig0023386:+13616 | None:intergenic |
| TGTAAATGCACAACATTGGT+TGG | 0.560698 | tig0023386:+9914 | None:intergenic |
| TGATTACGGTTCTACAGATG+TGG | 0.569987 | tig0023386:-10682 | Msa1408480:CDS |
| TGATTACGGTTCTACAGATG+TGG | 0.569987 | tig0023386:-14384 | Msa1408480:CDS |
| TATCCGATCATTGTTGGGAG+TGG | 0.573961 | tig0023386:-10642 | Msa1408480:CDS |
| TATCCGATCATTGTTGGGAG+TGG | 0.573961 | tig0023386:-14344 | Msa1408480:CDS |
| GATGAAAGTCAAGGTGATGA+AGG | 0.579998 | tig0023386:-10408 | Msa1408480:CDS |
| GATGAAAGTCAAGGTGATGA+AGG | 0.579998 | tig0023386:-14110 | Msa1408480:CDS |
| CAGTATGTATGCAACAAGCA+GGG | 0.584535 | tig0023386:-10097 | Msa1408480:CDS |
| CAGTATGTATGCAACAAGCA+GGG | 0.584535 | tig0023386:-13799 | Msa1408480:CDS |
| GGTGATAAAGGTGAAGATGA+TGG | 0.589452 | tig0023386:-10441 | Msa1408480:CDS |
| GGTGATAAAGGTGAAGATGA+TGG | 0.589452 | tig0023386:-14143 | Msa1408480:CDS |
| GGAGACAATGAAAGTGATGA+TGG | 0.609236 | tig0023386:-10489 | Msa1408480:CDS |
| GGAGACAATGAAAGTGATGA+TGG | 0.609236 | tig0023386:-14191 | Msa1408480:CDS |
| AGTGAAGGTCATGGTAGTGA+AGG | 0.614950 | tig0023386:-10327 | Msa1408480:CDS |
| AGTGAAGGTCATGGTAGTGA+AGG | 0.614950 | tig0023386:-14029 | Msa1408480:CDS |
| AGGGTGTAAATGCACAACAT+TGG | 0.627835 | tig0023386:+13612 | None:intergenic |
| AGGGTGTAAATGCACAACAT+TGG | 0.627835 | tig0023386:+9910 | None:intergenic |
| AGTATGTATGCAACAAGCAG+GGG | 0.634341 | tig0023386:-10096 | Msa1408480:CDS |
| AGTATGTATGCAACAAGCAG+GGG | 0.634341 | tig0023386:-13798 | Msa1408480:CDS |
| TGCACAACATTGGTTGGAGT+AGG | 0.634569 | tig0023386:+13622 | None:intergenic |
| TGCACAACATTGGTTGGAGT+AGG | 0.634569 | tig0023386:+9920 | None:intergenic |
| CTCGTACAAAGTGTCCAGCT+AGG | 0.644688 | tig0023386:-10015 | Msa1408480:CDS |
| CTCGTACAAAGTGTCCAGCT+AGG | 0.644688 | tig0023386:-13717 | Msa1408480:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | tig0023386:-10336 | Msa1408480:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | tig0023386:-14038 | Msa1408480:CDS |
| TGTTTATCGGAAAATATCTG+AGG | 0.678939 | tig0023386:-13590 | Msa1408480:intron |
| TGTTTATCGGAAAATATCTG+AGG | 0.678939 | tig0023386:-9888 | None:intergenic |
| TTAACGGTGAGATTGTAATG+AGG | 0.680367 | tig0023386:-10120 | Msa1408480:CDS |
| TTAACGGTGAGATTGTAATG+AGG | 0.680367 | tig0023386:-13822 | Msa1408480:CDS |
| GCTGATGATGATGTGAGTCA+TGG | 0.689439 | tig0023386:-10567 | Msa1408480:CDS |
| GCTGATGATGATGTGAGTCA+TGG | 0.689439 | tig0023386:-14269 | Msa1408480:CDS |
| AGTGAAGTTGATGAAAGTGA+AGG | 0.702612 | tig0023386:-10357 | Msa1408480:CDS |
| AGTGAAGTTGATGAAAGTGA+AGG | 0.702612 | tig0023386:-14059 | Msa1408480:CDS |
| GACAATGAAAGTGATGATGG+TGG | 0.706532 | tig0023386:-10486 | Msa1408480:CDS |
| GACAATGAAAGTGATGATGG+TGG | 0.706532 | tig0023386:-14188 | Msa1408480:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | tig0023386:-10342 | Msa1408480:CDS |
| AGTGAATGTGATGAAAGTCA+AGG | 0.717258 | tig0023386:-10417 | Msa1408480:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | tig0023386:-14044 | Msa1408480:CDS |
| AGTGAATGTGATGAAAGTCA+AGG | 0.717258 | tig0023386:-14119 | Msa1408480:CDS |
| ACTTTGTACGAGTGAGACGT+CGG | 0.726283 | tig0023386:+10026 | None:intergenic |
| ACTTTGTACGAGTGAGACGT+CGG | 0.726283 | tig0023386:+13728 | None:intergenic |
| AAGGGAATACATGTGATGAG+CGG | 0.727853 | tig0023386:-10524 | Msa1408480:CDS |
| AAGGGAATACATGTGATGAG+CGG | 0.727853 | tig0023386:-14226 | Msa1408480:CDS |
| GGTGAACGTGATGAAAGTGA+AGG | 0.739796 | tig0023386:-10387 | Msa1408480:CDS |
| GGTGAACGTGATGAAAGTGA+AGG | 0.739796 | tig0023386:-14089 | Msa1408480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTTTTTTATTTTACTTA+AGG | - | tig0023386:11805-11824 | Msa1408480:intron | 10.0% |
| !!! | TTAATTTGACATAAATAAAT+TGG | - | tig0023386:11922-11941 | Msa1408480:intron | 10.0% |
| !! | ATAAATAAATTGGAAAATTT+AGG | - | tig0023386:11932-11951 | Msa1408480:intron | 10.0% |
| !!! | ATTTTTTTTCTTACAAATTA+TGG | + | tig0023386:12089-12108 | None:intergenic | 10.0% |
| !! | ATTTGTAAGAAAAAAAATAA+TGG | - | tig0023386:12091-12110 | Msa1408480:intron | 10.0% |
| !!! | TACGATTTTTATTATAAGTA+CGG | - | tig0023386:10428-10447 | Msa1408480:CDS | 15.0% |
| !!! | TTTCATCTCAATTTTTTTTT+GGG | + | tig0023386:11124-11143 | None:intergenic | 15.0% |
| !!! | TTTTCATCTCAATTTTTTTT+TGG | + | tig0023386:11125-11144 | None:intergenic | 15.0% |
| !! | AAAAAATATTTGTTTGGTAA+CGG | + | tig0023386:11213-11232 | None:intergenic | 15.0% |
| !! | TTGACTAAAAAATATTTGTT+TGG | + | tig0023386:11219-11238 | None:intergenic | 15.0% |
| !! | AAAAATAAATTTCGTTTCTT+AGG | + | tig0023386:11718-11737 | None:intergenic | 15.0% |
| !! | AAACAAAAAATTTCAGAAAA+AGG | - | tig0023386:11846-11865 | Msa1408480:intron | 15.0% |
| !!! | TCAAGTTAACAATTTAAAAT+AGG | - | tig0023386:12322-12341 | Msa1408480:intron | 15.0% |
| !!! | CAAGTTAACAATTTAAAATA+GGG | - | tig0023386:12323-12342 | Msa1408480:intron | 15.0% |
| !!! | AAGTTAACAATTTAAAATAG+GGG | - | tig0023386:12324-12343 | Msa1408480:intron | 15.0% |
| !!! | TTTTTTCAGTAAAATATGAT+AGG | + | tig0023386:12721-12740 | None:intergenic | 15.0% |
| !!! | TTAAATTTTTTTATTCCAGA+TGG | - | tig0023386:13572-13591 | Msa1408480:intron | 15.0% |
| !!! | TACGATTTTTATTATAAGTA+CGG | - | tig0023386:10428-10447 | Msa1408480:CDS | 15.0% |
| !!! | AATTTTACGAAAAATACTCA+AGG | - | tig0023386:10075-10094 | Msa1408480:CDS | 20.0% |
| !!! | ATTTTACGAAAAATACTCAA+GGG | - | tig0023386:10076-10095 | Msa1408480:CDS | 20.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | - | tig0023386:10790-10809 | Msa1408480:intron | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | - | tig0023386:10791-10810 | Msa1408480:intron | 20.0% |
| !! | CTTAACATTCATATAGTTTA+GGG | + | tig0023386:10933-10952 | None:intergenic | 20.0% |
| !! | ACTTAACATTCATATAGTTT+AGG | + | tig0023386:10934-10953 | None:intergenic | 20.0% |
| !! | AAATCACAAAATGAATAGAT+TGG | - | tig0023386:11423-11442 | Msa1408480:intron | 20.0% |
| !!! | AAGTAACTTTTTTCAAATGA+TGG | + | tig0023386:11772-11791 | None:intergenic | 20.0% |
| !!! | TGAAAAAAGTTACTTTGATT+CGG | - | tig0023386:11777-11796 | Msa1408480:intron | 20.0% |
| !!! | TTTTTATTTTACTTAAGGAG+AGG | - | tig0023386:11810-11829 | Msa1408480:intron | 20.0% |
| !! | ATGGATAAATTGGAAAATTT+AGG | - | tig0023386:11889-11908 | Msa1408480:intron | 20.0% |
| !! | AAGCAATTATATTTCAAATG+GGG | + | tig0023386:12443-12462 | None:intergenic | 20.0% |
| !! | GAAGCAATTATATTTCAAAT+GGG | + | tig0023386:12444-12463 | None:intergenic | 20.0% |
| !!! | TAAGTATGTTTTCTGAAATT+GGG | + | tig0023386:13044-13063 | None:intergenic | 20.0% |
| !!! | TTAAGTATGTTTTCTGAAAT+TGG | + | tig0023386:13045-13064 | None:intergenic | 20.0% |
| !!! | AGAAAAATAATCTAAGGTAA+GGG | + | tig0023386:13089-13108 | None:intergenic | 20.0% |
| !! | GAATTCAGAAAAATAATCTA+AGG | + | tig0023386:13095-13114 | None:intergenic | 20.0% |
| !!! | ATTATTTTTCTGAATTCCAA+CGG | - | tig0023386:13098-13117 | Msa1408480:intron | 20.0% |
| !! | AAAATAATAACACGTACAAT+TGG | + | tig0023386:13180-13199 | None:intergenic | 20.0% |
| !! | TATTACATGCAGAAAAAAAT+AGG | + | tig0023386:13298-13317 | None:intergenic | 20.0% |
| !!! | TTTTCTGCATGTAATATTAT+CGG | - | tig0023386:13302-13321 | Msa1408480:intron | 20.0% |
| !! | GAAATCAAATACTGAAATTA+GGG | - | tig0023386:13342-13361 | Msa1408480:intron | 20.0% |
| !!! | AATTTTACGAAAAATACTCA+AGG | - | tig0023386:10075-10094 | Msa1408480:CDS | 20.0% |
| !!! | ATTTTACGAAAAATACTCAA+GGG | - | tig0023386:10076-10095 | Msa1408480:CDS | 20.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | tig0023386:10368-10387 | Msa1408480:CDS | 25.0% |
| !! | AAAAATGCGTGTTGTTATTA+AGG | - | tig0023386:10889-10908 | Msa1408480:intron | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | - | tig0023386:11003-11022 | Msa1408480:intron | 25.0% |
| !!! | AGATTAGATTATTTCTGCTT+TGG | - | tig0023386:11040-11059 | Msa1408480:intron | 25.0% |
| !!! | TTTATGGTTTGTTGAGAAAT+AGG | + | tig0023386:11344-11363 | None:intergenic | 25.0% |
| !! | TCTATTCGTTTTGTGTATTT+TGG | + | tig0023386:11380-11399 | None:intergenic | 25.0% |
| ! | TGACAATGGGAAAAAATATT+TGG | - | tig0023386:11613-11632 | Msa1408480:intron | 25.0% |
| ! | GACAATGGGAAAAAATATTT+GGG | - | tig0023386:11614-11633 | Msa1408480:intron | 25.0% |
| !!! | GGAAAAAATATTTGGGTTTT+CGG | - | tig0023386:11621-11640 | Msa1408480:intron | 25.0% |
| ! | GTCCAAAAAAAATTATGGTA+GGG | + | tig0023386:12173-12192 | None:intergenic | 25.0% |
| !!! | CTACCATAATTTTTTTTGGA+CGG | - | tig0023386:12172-12191 | Msa1408480:intron | 25.0% |
| ! | GACAATACATAATATATGCA+AGG | + | tig0023386:12216-12235 | None:intergenic | 25.0% |
| ! | GGAAGCAATTATATTTCAAA+TGG | + | tig0023386:12445-12464 | None:intergenic | 25.0% |
| ! | TTTGAGAAATAAGTGATTCT+AGG | + | tig0023386:12776-12795 | None:intergenic | 25.0% |
| ! | GTTATGTTAAATTGATGTTC+AGG | + | tig0023386:12888-12907 | None:intergenic | 25.0% |
| !!! | TTTTGGTTGTTTGAGAAATT+AGG | + | tig0023386:12957-12976 | None:intergenic | 25.0% |
| !! | TATGTTGATGTTCATAGTTT+TGG | + | tig0023386:12974-12993 | None:intergenic | 25.0% |
| !! | CAGAAAAATAATCTAAGGTA+AGG | + | tig0023386:13090-13109 | None:intergenic | 25.0% |
| ! | TTTCTGCATGTAATATTATC+GGG | - | tig0023386:13303-13322 | Msa1408480:intron | 25.0% |
| ! | CGAAATCAAATACTGAAATT+AGG | - | tig0023386:13341-13360 | Msa1408480:intron | 25.0% |
| ! | AAATACTGAAATTAGGGATT+AGG | - | tig0023386:13348-13367 | Msa1408480:intron | 25.0% |
| ! | AATACTGAAATTAGGGATTA+GGG | - | tig0023386:13349-13368 | Msa1408480:intron | 25.0% |
| !!! | TAGTTTTTGATTTGCTGATT+AGG | - | tig0023386:13399-13418 | Msa1408480:intron | 25.0% |
| !!! | AGTTTTTGATTTGCTGATTA+GGG | - | tig0023386:13400-13419 | Msa1408480:intron | 25.0% |
| !!! | TTATGATTGAGTAGTTTTGT+TGG | - | tig0023386:13474-13493 | Msa1408480:intron | 25.0% |
| ! | TGTTTAGTGTTCAATGATTA+TGG | - | tig0023386:13498-13517 | Msa1408480:intron | 25.0% |
| ! | TTATGGTTTATGTCTTCATT+TGG | - | tig0023386:13515-13534 | Msa1408480:intron | 25.0% |
| !!! | ATTTGGTTTGATAAGTGATT+AGG | - | tig0023386:13532-13551 | Msa1408480:intron | 25.0% |
| !!! | TTTGGTTTGATAAGTGATTA+GGG | - | tig0023386:13533-13552 | Msa1408480:intron | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | tig0023386:10368-10387 | Msa1408480:CDS | 25.0% |
| AAACAACAACAACGACTTTA+CGG | - | tig0023386:9894-9913 | Msa1408480:CDS | 30.0% | |
| AAACATATCCGATCATTGTT+GGG | - | tig0023386:9971-9990 | Msa1408480:CDS | 30.0% | |
| !!! | TGTTTTGGTGATTATAATGC+TGG | - | tig0023386:10156-10175 | Msa1408480:intron | 30.0% |
| GATTATAATGCTGGTGATAA+AGG | - | tig0023386:10165-10184 | Msa1408480:intron | 30.0% | |
| !!! | AGTGTAAAGTTTTTGCTGTT+AGG | - | tig0023386:10453-10472 | Msa1408480:CDS | 30.0% |
| AGCATTTATCAAGGTTAGAT+AGG | - | tig0023386:10558-10577 | Msa1408480:CDS | 30.0% | |
| ! | ACAACATATCTACCCTTTTT+GGG | + | tig0023386:10647-10666 | None:intergenic | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | - | tig0023386:10661-10680 | Msa1408480:CDS | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | - | tig0023386:10662-10681 | Msa1408480:CDS | 30.0% |
| ! | CAGATATTTTCCGATAAACA+GGG | + | tig0023386:10730-10749 | None:intergenic | 30.0% |
| ! | TCAGATATTTTCCGATAAAC+AGG | + | tig0023386:10731-10750 | None:intergenic | 30.0% |
| TGTTTATCGGAAAATATCTG+AGG | - | tig0023386:10730-10749 | Msa1408480:CDS | 30.0% | |
| ! | TTGTCATATAATGGGATACA+TGG | - | tig0023386:10799-10818 | Msa1408480:intron | 30.0% |
| GAATATTCACAAAAGGAATG+TGG | + | tig0023386:10968-10987 | None:intergenic | 30.0% | |
| !! | GACGTTTGAAATGTCTATTT+TGG | - | tig0023386:11002-11021 | Msa1408480:intron | 30.0% |
| !!! | TCTCAATTTTTTTTTGGGTC+AGG | + | tig0023386:11119-11138 | None:intergenic | 30.0% |
| !! | TGGTCTCATTGATTTCTTTA+TGG | + | tig0023386:11360-11379 | None:intergenic | 30.0% |
| ! | AATGAATAGATTGGTTGTTG+TGG | - | tig0023386:11432-11451 | Msa1408480:intron | 30.0% |
| !! | TTATTTTACTTAAGGAGAGG+TGG | - | tig0023386:11813-11832 | Msa1408480:intron | 30.0% |
| CTAAGTCAACATGGATAAAT+TGG | - | tig0023386:11879-11898 | Msa1408480:intron | 30.0% | |
| GATTTCTTATGAGACAATGT+TGG | + | tig0023386:12052-12071 | None:intergenic | 30.0% | |
| ACATTGTCTCATAAGAAATC+AGG | - | tig0023386:12052-12071 | Msa1408480:intron | 30.0% | |
| !!! | GTCCCTACCATAATTTTTTT+TGG | - | tig0023386:12168-12187 | Msa1408480:intron | 30.0% |
| CGTCCAAAAAAAATTATGGT+AGG | + | tig0023386:12174-12193 | None:intergenic | 30.0% | |
| AGACCTTCATAAAATGAAGT+GGG | + | tig0023386:12364-12383 | None:intergenic | 30.0% | |
| TAGACCTTCATAAAATGAAG+TGG | + | tig0023386:12365-12384 | None:intergenic | 30.0% | |
| CAATGTTCCCTATCAAATTT+GGG | + | tig0023386:12847-12866 | None:intergenic | 30.0% | |
| TCAGGTCTTAGATTTATCAT+AGG | + | tig0023386:12870-12889 | None:intergenic | 30.0% | |
| !!! | TTAGGTTTTGAAGATGTGTT+TGG | + | tig0023386:12939-12958 | None:intergenic | 30.0% |
| !!! | ATGTTTTCTGAAATTGGGTT+TGG | + | tig0023386:13039-13058 | None:intergenic | 30.0% |
| ! | AAATAATCTAAGGTAAGGGT+GGG | + | tig0023386:13085-13104 | None:intergenic | 30.0% |
| ! | AAAATAATCTAAGGTAAGGG+TGG | + | tig0023386:13086-13105 | None:intergenic | 30.0% |
| !! | TAATATTATCGGGATTGGTT+AGG | - | tig0023386:13313-13332 | Msa1408480:intron | 30.0% |
| ! | GATTAGGGTTTATCTCATTT+TGG | - | tig0023386:13548-13567 | Msa1408480:intron | 30.0% |
| AAACAACAACAACGACTTTA+CGG | - | tig0023386:9894-9913 | Msa1408480:CDS | 30.0% | |
| AAACATATCCGATCATTGTT+GGG | - | tig0023386:9971-9990 | Msa1408480:CDS | 30.0% | |
| !!! | TGTTTTGGTGATTATAATGC+TGG | - | tig0023386:10156-10175 | Msa1408480:intron | 30.0% |
| GATTATAATGCTGGTGATAA+AGG | - | tig0023386:10165-10184 | Msa1408480:intron | 30.0% | |
| !!! | AGTGTAAAGTTTTTGCTGTT+AGG | - | tig0023386:10453-10472 | Msa1408480:CDS | 30.0% |
| AGCATTTATCAAGGTTAGAT+AGG | - | tig0023386:10558-10577 | Msa1408480:CDS | 30.0% | |
| ! | ACAACATATCTACCCTTTTT+GGG | + | tig0023386:10647-10666 | None:intergenic | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | - | tig0023386:10661-10680 | Msa1408480:CDS | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | - | tig0023386:10662-10681 | Msa1408480:CDS | 30.0% |
| ! | CAGATATTTTCCGATAAACA+GGG | + | tig0023386:10730-10749 | None:intergenic | 30.0% |
| ! | TCAGATATTTTCCGATAAAC+AGG | + | tig0023386:10731-10750 | None:intergenic | 30.0% |
| ! | AACAACGACTTTACGGATTT+TGG | - | tig0023386:9901-9920 | Msa1408480:CDS | 35.0% |
| GAAACATATCCGATCATTGT+TGG | - | tig0023386:9970-9989 | Msa1408480:CDS | 35.0% | |
| AGTGAATGTGATGAAAGTCA+AGG | - | tig0023386:10201-10220 | Msa1408480:intron | 35.0% | |
| !! | AGTGAAGTTGATGAAAGTGA+AGG | - | tig0023386:10261-10280 | Msa1408480:intron | 35.0% |
| ! | GAAGATGATGATGTAGTTGT+TGG | - | tig0023386:10330-10349 | Msa1408480:CDS | 35.0% |
| ! | ATGTAGTTGTTGGTGAGAAA+TGG | - | tig0023386:10340-10359 | Msa1408480:CDS | 35.0% |
| CATTAACTGCTGAAGGAATA+AGG | - | tig0023386:10375-10394 | Msa1408480:CDS | 35.0% | |
| TGCTGAAGGAATAAGGAAAA+TGG | - | tig0023386:10382-10401 | Msa1408480:CDS | 35.0% | |
| CTGTTAGGAAGAGTGATATT+AGG | - | tig0023386:10468-10487 | Msa1408480:CDS | 35.0% | |
| GATATTAGGCGCAATGTTAA+CGG | - | tig0023386:10482-10501 | Msa1408480:CDS | 35.0% | |
| TTAACGGTGAGATTGTAATG+AGG | - | tig0023386:10498-10517 | Msa1408480:CDS | 35.0% | |
| !! | GAGAGAAGAAGCATTTATCA+AGG | - | tig0023386:10549-10568 | Msa1408480:CDS | 35.0% |
| !! | TTTTGGGTCTGTAATGAACA+CGG | + | tig0023386:10631-10650 | None:intergenic | 35.0% |
| TGTTCATTACAGACCCAAAA+AGG | - | tig0023386:10631-10650 | Msa1408480:CDS | 35.0% | |
| GTTCATTACAGACCCAAAAA+GGG | - | tig0023386:10632-10651 | Msa1408480:CDS | 35.0% | |
| ! | CACAACATATCTACCCTTTT+TGG | + | tig0023386:10648-10667 | None:intergenic | 35.0% |
| TGTAAATGCACAACATTGGT+TGG | + | tig0023386:10707-10726 | None:intergenic | 35.0% | |
| TGCATTTACACCCTGTTTAT+CGG | - | tig0023386:10717-10736 | Msa1408480:CDS | 35.0% | |
| GTAGATAAAGCACAGATTGA+TGG | - | tig0023386:10752-10771 | Msa1408480:intron | 35.0% | |
| ! | TCATATAATGGGATACATGG+TGG | - | tig0023386:10802-10821 | Msa1408480:intron | 35.0% |
| ! | ATGCGTGTTGTTATTAAGGA+TGG | - | tig0023386:10893-10912 | Msa1408480:intron | 35.0% |
| AGTGGCAGAATATTCACAAA+AGG | + | tig0023386:10975-10994 | None:intergenic | 35.0% | |
| !! | TTGAAATGTCTATTTTGGGC+AGG | - | tig0023386:11007-11026 | Msa1408480:intron | 35.0% |
| CAACAAGAACAAATACCACT+AGG | - | tig0023386:11090-11109 | Msa1408480:intron | 35.0% | |
| !! | AAATATTTGGGTTTTCGGTC+TGG | - | tig0023386:11626-11645 | Msa1408480:intron | 35.0% |
| GATAATCAGAAGTTCGACTA+AGG | - | tig0023386:11660-11679 | Msa1408480:intron | 35.0% | |
| TGTGAGAATCTAAGTCAACA+TGG | - | tig0023386:11870-11889 | Msa1408480:intron | 35.0% | |
| CGACCGTCCAAAAAAAATTA+TGG | + | tig0023386:12178-12197 | None:intergenic | 35.0% | |
| ! | AGACCCACTTCATTTTATGA+AGG | - | tig0023386:12358-12377 | Msa1408480:intron | 35.0% |
| !!! | TATTTTAGCACGTGTGGTTA+TGG | - | tig0023386:12383-12402 | Msa1408480:intron | 35.0% |
| TTCAAATGGGGATTTATGCA+CGG | + | tig0023386:12431-12450 | None:intergenic | 35.0% | |
| ! | TCAAAACTTTGGTTTCGCTT+GGG | + | tig0023386:12475-12494 | None:intergenic | 35.0% |
| ! | TTAGGTTTTTACGGACGAAA+CGG | + | tig0023386:12646-12665 | None:intergenic | 35.0% |
| !!! | GATTCTAGGATAAGCTGTTT+TGG | + | tig0023386:12762-12781 | None:intergenic | 35.0% |
| AACCCAACCCAAATTTGATA+GGG | - | tig0023386:12837-12856 | Msa1408480:intron | 35.0% | |
| ! | TTCCCTATCAAATTTGGGTT+GGG | + | tig0023386:12842-12861 | None:intergenic | 35.0% |
| GCAATGTTCCCTATCAAATT+TGG | + | tig0023386:12848-12867 | None:intergenic | 35.0% | |
| AGCTTGAAATACGAATCCAA+GGG | + | tig0023386:13245-13264 | None:intergenic | 35.0% | |
| GCATGTAATATTATCGGGAT+TGG | - | tig0023386:13308-13327 | Msa1408480:intron | 35.0% | |
| !!! | AGATTCGCTGGTTTTGATTA+CGG | - | tig0023386:13373-13392 | Msa1408480:intron | 35.0% |
| !! | TTGATTTGCTGATTAGGGTT+AGG | - | tig0023386:13405-13424 | Msa1408480:intron | 35.0% |
| !! | TGATTTGCTGATTAGGGTTA+GGG | - | tig0023386:13406-13425 | Msa1408480:intron | 35.0% |
| TAGTGATTAAGTAGATTCGC+TGG | - | tig0023386:13433-13452 | Msa1408480:intron | 35.0% | |
| ! | AACAACGACTTTACGGATTT+TGG | - | tig0023386:9901-9920 | Msa1408480:CDS | 35.0% |
| GAAACATATCCGATCATTGT+TGG | - | tig0023386:9970-9989 | Msa1408480:CDS | 35.0% | |
| AGTGAATGTGATGAAAGTCA+AGG | - | tig0023386:10201-10220 | Msa1408480:intron | 35.0% | |
| !! | AGTGAAGTTGATGAAAGTGA+AGG | - | tig0023386:10261-10280 | Msa1408480:intron | 35.0% |
| ! | GAAGATGATGATGTAGTTGT+TGG | - | tig0023386:10330-10349 | Msa1408480:CDS | 35.0% |
| ! | ATGTAGTTGTTGGTGAGAAA+TGG | - | tig0023386:10340-10359 | Msa1408480:CDS | 35.0% |
| CATTAACTGCTGAAGGAATA+AGG | - | tig0023386:10375-10394 | Msa1408480:CDS | 35.0% | |
| TGCTGAAGGAATAAGGAAAA+TGG | - | tig0023386:10382-10401 | Msa1408480:CDS | 35.0% | |
| CTGTTAGGAAGAGTGATATT+AGG | - | tig0023386:10468-10487 | Msa1408480:CDS | 35.0% | |
| GATATTAGGCGCAATGTTAA+CGG | - | tig0023386:10482-10501 | Msa1408480:CDS | 35.0% | |
| TTAACGGTGAGATTGTAATG+AGG | - | tig0023386:10498-10517 | Msa1408480:CDS | 35.0% | |
| !! | GAGAGAAGAAGCATTTATCA+AGG | - | tig0023386:10549-10568 | Msa1408480:CDS | 35.0% |
| !! | TTTTGGGTCTGTAATGAACA+CGG | + | tig0023386:10631-10650 | None:intergenic | 35.0% |
| TGTTCATTACAGACCCAAAA+AGG | - | tig0023386:10631-10650 | Msa1408480:CDS | 35.0% | |
| GTTCATTACAGACCCAAAAA+GGG | - | tig0023386:10632-10651 | Msa1408480:CDS | 35.0% | |
| ! | CACAACATATCTACCCTTTT+TGG | + | tig0023386:10648-10667 | None:intergenic | 35.0% |
| TGTAAATGCACAACATTGGT+TGG | + | tig0023386:10707-10726 | None:intergenic | 35.0% | |
| TGCATTTACACCCTGTTTAT+CGG | - | tig0023386:10717-10736 | Msa1408480:CDS | 35.0% | |
| !! | CTTTACGGATTTTGGTACAC+CGG | - | tig0023386:9909-9928 | Msa1408480:CDS | 40.0% |
| GTAGAACCGTAATCATGTTC+CGG | + | tig0023386:9931-9950 | None:intergenic | 40.0% | |
| TGATTACGGTTCTACAGATG+TGG | - | tig0023386:9936-9955 | Msa1408480:CDS | 40.0% | |
| AAGGGAATACATGTGATGAG+CGG | - | tig0023386:10094-10113 | Msa1408480:CDS | 40.0% | |
| GGAGACAATGAAAGTGATGA+TGG | - | tig0023386:10129-10148 | Msa1408480:CDS | 40.0% | |
| !! | GACAATGAAAGTGATGATGG+TGG | - | tig0023386:10132-10151 | Msa1408480:CDS | 40.0% |
| !!! | AGTGATGATGGTGGTTGTTT+TGG | - | tig0023386:10141-10160 | Msa1408480:CDS | 40.0% |
| GGTGATAAAGGTGAAGATGA+TGG | - | tig0023386:10177-10196 | Msa1408480:intron | 40.0% | |
| GATGAAAGTCAAGGTGATGA+AGG | - | tig0023386:10210-10229 | Msa1408480:intron | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | tig0023386:10246-10265 | Msa1408480:intron | 40.0% | |
| CAGTATGTATGCAACAAGCA+GGG | - | tig0023386:10521-10540 | Msa1408480:CDS | 40.0% | |
| AGTATGTATGCAACAAGCAG+GGG | - | tig0023386:10522-10541 | Msa1408480:CDS | 40.0% | |
| AGGGTGTAAATGCACAACAT+TGG | + | tig0023386:10711-10730 | None:intergenic | 40.0% | |
| ! | ATTGATGGTCTTCAGTCACA+CGG | - | tig0023386:10767-10786 | Msa1408480:intron | 40.0% |
| AAAGGAATGTGGATCAGTTG+AGG | + | tig0023386:10957-10976 | None:intergenic | 40.0% | |
| GAATATTCTGCCACTGATGA+CGG | - | tig0023386:10980-10999 | Msa1408480:intron | 40.0% | |
| !! | AAATGTCTATTTTGGGCAGG+TGG | - | tig0023386:11010-11029 | Msa1408480:intron | 40.0% |
| !! | TTATTTCTGCTTTGGCGATG+TGG | - | tig0023386:11048-11067 | Msa1408480:intron | 40.0% |
| ACTTTCTCACGAGCTTATAG+CGG | + | tig0023386:11188-11207 | None:intergenic | 40.0% | |
| AATCAGAAGTTCGACTAAGG+AGG | - | tig0023386:11663-11682 | Msa1408480:intron | 40.0% | |
| !!! | AAGGTCTATTTTAGCACGTG+TGG | - | tig0023386:12377-12396 | Msa1408480:intron | 40.0% |
| ! | AAAACTTTGGTTTCGCTTGG+GGG | + | tig0023386:12473-12492 | None:intergenic | 40.0% |
| ! | CAAAACTTTGGTTTCGCTTG+GGG | + | tig0023386:12474-12493 | None:intergenic | 40.0% |
| ! | GTCAAAACTTTGGTTTCGCT+TGG | + | tig0023386:12476-12495 | None:intergenic | 40.0% |
| !! | GGGTAACGGTTAGGTTTTTA+CGG | + | tig0023386:12655-12674 | None:intergenic | 40.0% |
| CGAAAACAGAATTGGAATCG+GGG | + | tig0023386:12675-12694 | None:intergenic | 40.0% | |
| GCGAAAACAGAATTGGAATC+GGG | + | tig0023386:12676-12695 | None:intergenic | 40.0% | |
| GGCGAAAACAGAATTGGAAT+CGG | + | tig0023386:12677-12696 | None:intergenic | 40.0% | |
| ATTTGTCGAATAGAACGCGT+AGG | + | tig0023386:12698-12717 | None:intergenic | 40.0% | |
| CAACCCAACCCAAATTTGAT+AGG | - | tig0023386:12836-12855 | Msa1408480:intron | 40.0% | |
| GTTCCCTATCAAATTTGGGT+TGG | + | tig0023386:12843-12862 | None:intergenic | 40.0% | |
| !!! | GTTGTGAGTTTTGGGGATTA+GGG | + | tig0023386:13004-13023 | None:intergenic | 40.0% |
| ! | TCTGAAATTGGGTTTGGCAA+AGG | + | tig0023386:13033-13052 | None:intergenic | 40.0% |
| AGAAAAGAGGAGAAAAGAGG+AGG | + | tig0023386:13157-13176 | None:intergenic | 40.0% | |
| TGGAGAAAAGAGGAGAAAAG+AGG | + | tig0023386:13160-13179 | None:intergenic | 40.0% | |
| CACGTACAATTGGAGAAAAG+AGG | + | tig0023386:13170-13189 | None:intergenic | 40.0% | |
| GAGCTTGAAATACGAATCCA+AGG | + | tig0023386:13246-13265 | None:intergenic | 40.0% | |
| TCAAGCTCAACTGTGAAGTT+AGG | - | tig0023386:13258-13277 | Msa1408480:intron | 40.0% | |
| !!! | CGTTGTTGTTGTTTTCCATC+TGG | + | tig0023386:13590-13609 | None:intergenic | 40.0% |
| !! | CTTTACGGATTTTGGTACAC+CGG | - | tig0023386:9909-9928 | Msa1408480:CDS | 40.0% |
| GTAGAACCGTAATCATGTTC+CGG | + | tig0023386:9931-9950 | None:intergenic | 40.0% | |
| TGATTACGGTTCTACAGATG+TGG | - | tig0023386:9936-9955 | Msa1408480:CDS | 40.0% | |
| AAGGGAATACATGTGATGAG+CGG | - | tig0023386:10094-10113 | Msa1408480:CDS | 40.0% | |
| GGAGACAATGAAAGTGATGA+TGG | - | tig0023386:10129-10148 | Msa1408480:CDS | 40.0% | |
| !! | GACAATGAAAGTGATGATGG+TGG | - | tig0023386:10132-10151 | Msa1408480:CDS | 40.0% |
| !!! | AGTGATGATGGTGGTTGTTT+TGG | - | tig0023386:10141-10160 | Msa1408480:CDS | 40.0% |
| GGTGATAAAGGTGAAGATGA+TGG | - | tig0023386:10177-10196 | Msa1408480:intron | 40.0% | |
| GATGAAAGTCAAGGTGATGA+AGG | - | tig0023386:10210-10229 | Msa1408480:intron | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | tig0023386:10246-10265 | Msa1408480:intron | 40.0% | |
| CAGTATGTATGCAACAAGCA+GGG | - | tig0023386:10521-10540 | Msa1408480:CDS | 40.0% | |
| AGTATGTATGCAACAAGCAG+GGG | - | tig0023386:10522-10541 | Msa1408480:CDS | 40.0% | |
| AGGGTGTAAATGCACAACAT+TGG | + | tig0023386:10711-10730 | None:intergenic | 40.0% | |
| GGTACACCGGAACATGATTA+CGG | - | tig0023386:9922-9941 | Msa1408480:CDS | 45.0% | |
| TATCCGATCATTGTTGGGAG+TGG | - | tig0023386:9976-9995 | Msa1408480:CDS | 45.0% | |
| ! | GCTGATGATGATGTGAGTCA+TGG | - | tig0023386:10051-10070 | Msa1408480:CDS | 45.0% |
| GATGAGCGGTATGATGAAAC+TGG | - | tig0023386:10108-10127 | Msa1408480:CDS | 45.0% | |
| GGTGAACGTGATGAAAGTGA+AGG | - | tig0023386:10231-10250 | Msa1408480:intron | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | tig0023386:10282-10301 | Msa1408480:CDS | 45.0% | |
| ! | AGTGAAGGTCATGGTAGTGA+AGG | - | tig0023386:10291-10310 | Msa1408480:CDS | 45.0% |
| ! | GTTGTTGGTGAGAAATGGTG+AGG | - | tig0023386:10345-10364 | Msa1408480:CDS | 45.0% |
| GCAGTATGTATGCAACAAGC+AGG | - | tig0023386:10520-10539 | Msa1408480:CDS | 45.0% | |
| ACTTTGTACGAGTGAGACGT+CGG | + | tig0023386:10595-10614 | None:intergenic | 45.0% | |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | + | tig0023386:10694-10713 | None:intergenic | 45.0% |
| ! | TGCACAACATTGGTTGGAGT+AGG | + | tig0023386:10701-10720 | None:intergenic | 45.0% |
| TTCTTAGTGAACCCAACACC+AGG | + | tig0023386:10845-10864 | None:intergenic | 45.0% | |
| TTTCAAACGTCCGTCATCAG+TGG | + | tig0023386:10993-11012 | None:intergenic | 45.0% | |
| ATGTGCATTGCACGTGACAA+TGG | - | tig0023386:11599-11618 | Msa1408480:intron | 45.0% | |
| TGTGCATTGCACGTGACAAT+GGG | - | tig0023386:11600-11619 | Msa1408480:intron | 45.0% | |
| ! | TGAGTCTAACTCGGTTGGTA+GGG | + | tig0023386:12238-12257 | None:intergenic | 45.0% |
| GGATTTATGCACGGTGCATA+AGG | + | tig0023386:12422-12441 | None:intergenic | 45.0% | |
| GTTGCGTGCTGTCAAAACTT+TGG | + | tig0023386:12486-12505 | None:intergenic | 45.0% | |
| TACGGACGAAACGGTAAAAC+CGG | + | tig0023386:12637-12656 | None:intergenic | 45.0% | |
| CAGAATTGGAATCGGGGTAA+CGG | + | tig0023386:12669-12688 | None:intergenic | 45.0% | |
| !!! | GGTTGTGAGTTTTGGGGATT+AGG | + | tig0023386:13005-13024 | None:intergenic | 45.0% |
| ! | GTTGCAGGTTGTGAGTTTTG+GGG | + | tig0023386:13011-13030 | None:intergenic | 45.0% |
| ! | GGTTGCAGGTTGTGAGTTTT+GGG | + | tig0023386:13012-13031 | None:intergenic | 45.0% |
| ! | AGGTTGCAGGTTGTGAGTTT+TGG | + | tig0023386:13013-13032 | None:intergenic | 45.0% |
| GGTACACCGGAACATGATTA+CGG | - | tig0023386:9922-9941 | Msa1408480:CDS | 45.0% | |
| TATCCGATCATTGTTGGGAG+TGG | - | tig0023386:9976-9995 | Msa1408480:CDS | 45.0% | |
| ! | GCTGATGATGATGTGAGTCA+TGG | - | tig0023386:10051-10070 | Msa1408480:CDS | 45.0% |
| GATGAGCGGTATGATGAAAC+TGG | - | tig0023386:10108-10127 | Msa1408480:CDS | 45.0% | |
| GGTGAACGTGATGAAAGTGA+AGG | - | tig0023386:10231-10250 | Msa1408480:intron | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | tig0023386:10282-10301 | Msa1408480:CDS | 45.0% | |
| ! | AGTGAAGGTCATGGTAGTGA+AGG | - | tig0023386:10291-10310 | Msa1408480:CDS | 45.0% |
| ! | GTTGTTGGTGAGAAATGGTG+AGG | - | tig0023386:10345-10364 | Msa1408480:CDS | 45.0% |
| GCAGTATGTATGCAACAAGC+AGG | - | tig0023386:10520-10539 | Msa1408480:CDS | 45.0% | |
| ACTTTGTACGAGTGAGACGT+CGG | + | tig0023386:10595-10614 | None:intergenic | 45.0% | |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | + | tig0023386:10694-10713 | None:intergenic | 45.0% |
| ! | TGCACAACATTGGTTGGAGT+AGG | + | tig0023386:10701-10720 | None:intergenic | 45.0% |
| !!! | TAAAATATTGATAATTTTTT+TGG | - | tig0023386:11990-12009 | Msa1408480:intron | 5.0% |
| CCACCACTCCCAACAATGAT+CGG | + | tig0023386:9982-10001 | None:intergenic | 50.0% | |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | - | tig0023386:10603-10622 | Msa1408480:CDS | 50.0% |
| TAATGAACACGGAGCCTAGC+TGG | + | tig0023386:10620-10639 | None:intergenic | 50.0% | |
| GGATACATGGTGGCTCAGAA+GGG | - | tig0023386:10812-10831 | Msa1408480:intron | 50.0% | |
| AAGGGTGGATATCCTGGTGT+TGG | - | tig0023386:10830-10849 | Msa1408480:intron | 50.0% | |
| AGGGTGGATATCCTGGTGTT+GGG | - | tig0023386:10831-10850 | Msa1408480:intron | 50.0% | |
| !! | TTTTGGGTCAGGTAGCCTAG+TGG | + | tig0023386:11108-11127 | None:intergenic | 50.0% |
| TGTGGTGAGAGAACAGTGAC+AGG | - | tig0023386:11450-11469 | Msa1408480:intron | 50.0% | |
| GTGAGAGAACAGTGACAGGT+GGG | - | tig0023386:11454-11473 | Msa1408480:intron | 50.0% | |
| GGGTGTTTGAGGAGAGACAT+TGG | - | tig0023386:11474-11493 | Msa1408480:intron | 50.0% | |
| GTGAGTCTAACTCGGTTGGT+AGG | + | tig0023386:12239-12258 | None:intergenic | 50.0% | |
| CTGTCCTCGTGAGTCTAACT+CGG | + | tig0023386:12247-12266 | None:intergenic | 50.0% | |
| ACAACAAGCAGTCACCCATG+AGG | - | tig0023386:12512-12531 | Msa1408480:intron | 50.0% | |
| CAACAAGCAGTCACCCATGA+GGG | - | tig0023386:12513-12532 | Msa1408480:intron | 50.0% | |
| AACAAGCAGTCACCCATGAG+GGG | - | tig0023386:12514-12533 | Msa1408480:intron | 50.0% | |
| GGTAAAACCGGGGAAAAACC+AGG | + | tig0023386:12625-12644 | None:intergenic | 50.0% | |
| ACGGACGAAACGGTAAAACC+GGG | + | tig0023386:12636-12655 | None:intergenic | 50.0% | |
| ! | TTGGAATCGGGGTAACGGTT+AGG | + | tig0023386:12664-12683 | None:intergenic | 50.0% |
| CGCGTAGGCGAAAACAGAAT+TGG | + | tig0023386:12683-12702 | None:intergenic | 50.0% | |
| TTGGGTTTGGCAAAGGTTGC+AGG | + | tig0023386:13026-13045 | None:intergenic | 50.0% | |
| ATAGGGTGGAGACTGGAGAT+TGG | + | tig0023386:13209-13228 | None:intergenic | 50.0% | |
| AGGGCAACGATCGGGAAATA+GGG | + | tig0023386:13226-13245 | None:intergenic | 50.0% | |
| AAGGGCAACGATCGGGAAAT+AGG | + | tig0023386:13227-13246 | None:intergenic | 50.0% | |
| TATTTCCCGATCGTTGCCCT+TGG | - | tig0023386:13226-13245 | Msa1408480:intron | 50.0% | |
| ACGAATCCAAGGGCAACGAT+CGG | + | tig0023386:13235-13254 | None:intergenic | 50.0% | |
| AGGGATTAGGGTAGATTCGC+TGG | - | tig0023386:13361-13380 | Msa1408480:intron | 50.0% | |
| CCACCACTCCCAACAATGAT+CGG | + | tig0023386:9982-10001 | None:intergenic | 50.0% | |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | - | tig0023386:10603-10622 | Msa1408480:CDS | 50.0% |
| TAATGAACACGGAGCCTAGC+TGG | + | tig0023386:10620-10639 | None:intergenic | 50.0% | |
| CCGATCATTGTTGGGAGTGG+TGG | - | tig0023386:9979-9998 | Msa1408480:CDS | 55.0% | |
| GGGATACATGGTGGCTCAGA+AGG | - | tig0023386:10811-10830 | Msa1408480:intron | 55.0% | |
| TACATGGTGGCTCAGAAGGG+TGG | - | tig0023386:10815-10834 | Msa1408480:intron | 55.0% | |
| GCTCAGAAGGGTGGATATCC+TGG | - | tig0023386:10824-10843 | Msa1408480:intron | 55.0% | |
| GGTGAGAGAACAGTGACAGG+TGG | - | tig0023386:11453-11472 | Msa1408480:intron | 55.0% | |
| CAGTGACAGGTGGGTGTTTG+AGG | - | tig0023386:11463-11482 | Msa1408480:intron | 55.0% | |
| CCTCGTGAGTCTAACTCGGT+TGG | + | tig0023386:12243-12262 | None:intergenic | 55.0% | |
| CCAACCGAGTTAGACTCACG+AGG | - | tig0023386:12240-12259 | Msa1408480:intron | 55.0% | |
| !! | GTGCAGTCCTGGTTTTTCCC+CGG | - | tig0023386:12615-12634 | Msa1408480:intron | 55.0% |
| CGGACGAAACGGTAAAACCG+GGG | + | tig0023386:12635-12654 | None:intergenic | 55.0% | |
| GGCTGCGTTCTTCGTTCCTA+GGG | - | tig0023386:13119-13138 | Msa1408480:intron | 55.0% | |
| GAGGAGTCAGAGAGAACCCT+AGG | + | tig0023386:13138-13157 | None:intergenic | 55.0% | |
| TCGGGAAATAGGGTGGAGAC+TGG | + | tig0023386:13216-13235 | None:intergenic | 55.0% | |
| GCAACGATCGGGAAATAGGG+TGG | + | tig0023386:13223-13242 | None:intergenic | 55.0% | |
| CGAATCCAAGGGCAACGATC+GGG | + | tig0023386:13234-13253 | None:intergenic | 55.0% | |
| CCGATCATTGTTGGGAGTGG+TGG | - | tig0023386:9979-9998 | Msa1408480:CDS | 55.0% | |
| ! | TGGTTTCGCTTGGGGGTGCA+AGG | + | tig0023386:12466-12485 | None:intergenic | 60.0% |
| TTCCACGCTTGAGCGCAGCA+AGG | + | tig0023386:12543-12562 | None:intergenic | 60.0% | |
| GCTACTGCCTTCCCATGCCT+GGG | + | tig0023386:12573-12592 | None:intergenic | 60.0% | |
| ATAGCTGCAGCGCAGGTCAC+TGG | + | tig0023386:12595-12614 | None:intergenic | 60.0% | |
| ACTGCACATAGCTGCAGCGC+AGG | + | tig0023386:12602-12621 | None:intergenic | 60.0% | |
| GCTGCAGCTATGTGCAGTCC+TGG | - | tig0023386:12604-12623 | Msa1408480:intron | 60.0% | |
| GGAACGAAGAACGCAGCCGT+TGG | + | tig0023386:13117-13136 | None:intergenic | 60.0% | |
| CGGCTGCGTTCTTCGTTCCT+AGG | - | tig0023386:13118-13137 | Msa1408480:intron | 60.0% | |
| GCAGCAAGGCAGCCCCTCAT+GGG | + | tig0023386:12529-12548 | None:intergenic | 65.0% | |
| TGCCTTGCTGCGCTCAAGCG+TGG | - | tig0023386:12538-12557 | Msa1408480:intron | 65.0% | |
| AAGCGTGGAAAGCTGCGCCC+AGG | - | tig0023386:12553-12572 | Msa1408480:intron | 65.0% | |
| TGGAAAGCTGCGCCCAGGCA+TGG | - | tig0023386:12558-12577 | Msa1408480:intron | 65.0% | |
| GGAAAGCTGCGCCCAGGCAT+GGG | - | tig0023386:12559-12578 | Msa1408480:intron | 65.0% | |
| GGCTACTGCCTTCCCATGCC+TGG | + | tig0023386:12574-12593 | None:intergenic | 65.0% | |
| CGCAGCAAGGCAGCCCCTCA+TGG | + | tig0023386:12530-12549 | None:intergenic | 70.0% | |
| AGCTGCGCCCAGGCATGGGA+AGG | - | tig0023386:12563-12582 | Msa1408480:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023386 | gene | 9889 | 14453 | 9889 | ID=Msa1408480;Name=Msa1408480 |
| tig0023386 | mRNA | 9889 | 14453 | 9889 | ID=Msa1408480-mRNA-1;Parent=Msa1408480;Name=Msa1408480-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|0.66|0.5|4|0|500 |
| tig0023386 | exon | 13981 | 14453 | 13981 | ID=Msa1408480-mRNA-1:exon:25614;Parent=Msa1408480-mRNA-1 |
| tig0023386 | exon | 13591 | 13867 | 13591 | ID=Msa1408480-mRNA-1:exon:25613;Parent=Msa1408480-mRNA-1 |
| tig0023386 | exon | 10279 | 10751 | 10279 | ID=Msa1408480-mRNA-1:exon:25612;Parent=Msa1408480-mRNA-1 |
| tig0023386 | exon | 9889 | 10165 | 9889 | ID=Msa1408480-mRNA-1:exon:25611;Parent=Msa1408480-mRNA-1 |
| tig0023386 | CDS | 13981 | 14453 | 13981 | ID=Msa1408480-mRNA-1:cds;Parent=Msa1408480-mRNA-1 |
| tig0023386 | CDS | 13591 | 13867 | 13591 | ID=Msa1408480-mRNA-1:cds;Parent=Msa1408480-mRNA-1 |
| tig0023386 | CDS | 10279 | 10751 | 10279 | ID=Msa1408480-mRNA-1:cds;Parent=Msa1408480-mRNA-1 |
| tig0023386 | CDS | 9889 | 10165 | 9889 | ID=Msa1408480-mRNA-1:cds;Parent=Msa1408480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
