Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408810 | KEH17998.1 | 77.551 | 196 | 32 | 1 | 1 | 184 | 1 | 196 | 9.89e-106 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408810 | A0A072TMD2 | 77.551 | 196 | 32 | 1 | 1 | 184 | 1 | 196 | 4.72e-106 | 312 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1408810 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408810 | MtrunA17_Chr8g0337271 | 77.551 | 196 | 32 | 1 | 1 | 184 | 1 | 196 | 9.10e-110 | 312 |
| Msa1408810 | MtrunA17_Chr8g0358731 | 31.000 | 200 | 89 | 7 | 1 | 186 | 1 | 165 | 3.99e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCAAGGATGTGCTTATT+TGG | 0.063042 | tig0023416:+49551 | None:intergenic |
| TTCAGTGTGTTATTCAAATT+TGG | 0.105357 | tig0023416:-49716 | Msa1408810:CDS |
| CTGACTTAAACTTGAGTATA+TGG | 0.197296 | tig0023416:-49435 | Msa1408810:CDS |
| CATGACACTGATTGTGAATT+TGG | 0.306396 | tig0023416:-49771 | Msa1408810:CDS |
| TCAGTGTGTTATTCAAATTT+GGG | 0.308325 | tig0023416:-49715 | Msa1408810:CDS |
| CAAATTCCCCATCTTACTTT+GGG | 0.318196 | tig0023416:+48946 | None:intergenic |
| ATCCAAGGATGTGCTTATTT+GGG | 0.326625 | tig0023416:+49552 | None:intergenic |
| TCAAATTCCCCATCTTACTT+TGG | 0.345284 | tig0023416:+48945 | None:intergenic |
| TCTTGGACACCAATTGGAGC+TGG | 0.391570 | tig0023416:-49578 | Msa1408810:CDS |
| AAAGTCTTCATCCTCATTAC+TGG | 0.397078 | tig0023416:+48970 | None:intergenic |
| TTCATCAGCCACCATTCCCT+TGG | 0.409411 | tig0023416:+49027 | None:intergenic |
| TGTCCAAGAAAACCCCGATC+TGG | 0.424943 | tig0023416:+49592 | None:intergenic |
| TTTGGGCACCCAGCTCCAAT+TGG | 0.428496 | tig0023416:+49569 | None:intergenic |
| GGGAATGGTGGCTGATGAAA+AGG | 0.430935 | tig0023416:-49023 | Msa1408810:CDS |
| TGACTTAAACTTGAGTATAT+GGG | 0.443514 | tig0023416:-49434 | Msa1408810:intron |
| CTTGGACACCAATTGGAGCT+GGG | 0.456606 | tig0023416:-49577 | Msa1408810:CDS |
| TTGGCGAAGTAACCCAGATC+GGG | 0.470404 | tig0023416:-49605 | Msa1408810:CDS |
| TGCCCAAATAAGCACATCCT+TGG | 0.475102 | tig0023416:-49554 | Msa1408810:CDS |
| AGCAATTTCAATTTCATCCA+AGG | 0.478006 | tig0023416:+49537 | None:intergenic |
| CATATACTCAAGTTTAAGTC+AGG | 0.479889 | tig0023416:+49436 | None:intergenic |
| TCTCCTCTTTCACAAGTACA+TGG | 0.497829 | tig0023416:+49185 | None:intergenic |
| TCCTTCTGTGAGAAGCGAAT+CGG | 0.511515 | tig0023416:+49633 | None:intergenic |
| TACTGAACACATGGGTGACA+TGG | 0.514848 | tig0023416:-49237 | Msa1408810:CDS |
| GCCGATTCGCTTCTCACAGA+AGG | 0.517177 | tig0023416:-49634 | Msa1408810:CDS |
| ATTCCATGTACTTGTGAAAG+AGG | 0.523001 | tig0023416:-49188 | Msa1408810:CDS |
| TGTACACAGTAATGCATCCA+AGG | 0.526625 | tig0023416:-49044 | Msa1408810:intron |
| GTCCAAGAAAACCCCGATCT+GGG | 0.526848 | tig0023416:+49593 | None:intergenic |
| CTGAAAGTCAGCATGCCTAC+TGG | 0.528158 | tig0023416:+49734 | None:intergenic |
| TGTGCCGACATATGAGAAGA+AGG | 0.531308 | tig0023416:-49794 | Msa1408810:CDS |
| GTGGCTGATGAAAAGGGAAA+AGG | 0.537842 | tig0023416:-49016 | Msa1408810:CDS |
| CTTGGCGAAGTAACCCAGAT+CGG | 0.540526 | tig0023416:-49606 | Msa1408810:CDS |
| CATGCCTTCTTCTCATATGT+CGG | 0.541385 | tig0023416:+49790 | None:intergenic |
| GTCTTCATCCTCATTACTGG+TGG | 0.547436 | tig0023416:+48973 | None:intergenic |
| GCAACAATTTGTCTTTGATG+TGG | 0.547669 | tig0023416:+49655 | None:intergenic |
| TTCTCACAGAAGGAGAAGCT+TGG | 0.549947 | tig0023416:-49624 | Msa1408810:CDS |
| GTGCAAGAAGGCATGGAAGA+AGG | 0.556829 | tig0023416:+49466 | None:intergenic |
| CAGTGTGTTATTCAAATTTG+GGG | 0.561228 | tig0023416:-49714 | Msa1408810:intron |
| CAGTAATGCATCCAAGGGAA+TGG | 0.575632 | tig0023416:-49038 | Msa1408810:CDS |
| AATTTGAGTGCAAGAAGGCA+TGG | 0.581783 | tig0023416:+49459 | None:intergenic |
| AAATGCATCAGAGAAATACA+AGG | 0.593981 | tig0023416:-49833 | Msa1408810:CDS |
| TAATGCATCCAAGGGAATGG+TGG | 0.611462 | tig0023416:-49035 | Msa1408810:CDS |
| ACAAGGACCCACCAGTAATG+AGG | 0.613595 | tig0023416:-48981 | Msa1408810:CDS |
| CTTGTGAAAGAGGAGAATCA+AGG | 0.617523 | tig0023416:-49178 | Msa1408810:intron |
| GGAATGGTGGCTGATGAAAA+GGG | 0.618900 | tig0023416:-49022 | Msa1408810:CDS |
| CATGGGTGACATGGACATCA+CGG | 0.621521 | tig0023416:-49228 | Msa1408810:CDS |
| TCAGGAATTTGAGTGCAAGA+AGG | 0.621914 | tig0023416:+49454 | None:intergenic |
| TTAATAGAGTACTGAACACA+TGG | 0.626411 | tig0023416:-49246 | Msa1408810:intron |
| GTACACAGTAATGCATCCAA+GGG | 0.631300 | tig0023416:-49043 | Msa1408810:intron |
| TCTTCATCCTCATTACTGGT+GGG | 0.637097 | tig0023416:+48974 | None:intergenic |
| AAAGGAATTCTTAATGAACA+AGG | 0.657272 | tig0023416:-48998 | Msa1408810:CDS |
| TGGCGAAGTAACCCAGATCG+GGG | 0.667644 | tig0023416:-49604 | Msa1408810:CDS |
| ATCACGGAACAAGACATGCA+AGG | 0.684891 | tig0023416:-49212 | Msa1408810:CDS |
| AATGCATCAGAGAAATACAA+GGG | 0.687321 | tig0023416:-49832 | Msa1408810:CDS |
| TAATAGAGTACTGAACACAT+GGG | 0.740993 | tig0023416:-49245 | Msa1408810:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAAAGAATGATAGATTT+TGG | + | tig0023416:49460-49479 | None:intergenic | 20.0% |
| !!! | TTGAAAAGAATGATAGATTT+TGG | + | tig0023416:49460-49479 | None:intergenic | 20.0% |
| !! | TTCAGTGTGTTATTCAAATT+TGG | - | tig0023416:49034-49053 | Msa1408810:CDS | 25.0% |
| !! | TCAGTGTGTTATTCAAATTT+GGG | - | tig0023416:49035-49054 | Msa1408810:CDS | 25.0% |
| ! | TTAATTGCATAATTCTCATC+AGG | + | tig0023416:49070-49089 | None:intergenic | 25.0% |
| ! | TGACTTAAACTTGAGTATAT+GGG | - | tig0023416:49316-49335 | Msa1408810:intron | 25.0% |
| ! | AAAGGAATTCTTAATGAACA+AGG | - | tig0023416:49752-49771 | Msa1408810:CDS | 25.0% |
| !! | TTCAGTGTGTTATTCAAATT+TGG | - | tig0023416:49034-49053 | Msa1408810:CDS | 25.0% |
| !! | TCAGTGTGTTATTCAAATTT+GGG | - | tig0023416:49035-49054 | Msa1408810:CDS | 25.0% |
| ! | TTAATTGCATAATTCTCATC+AGG | + | tig0023416:49070-49089 | None:intergenic | 25.0% |
| ! | TGACTTAAACTTGAGTATAT+GGG | - | tig0023416:49316-49335 | Msa1408810:intron | 25.0% |
| ! | AAAGGAATTCTTAATGAACA+AGG | - | tig0023416:49752-49771 | Msa1408810:CDS | 25.0% |
| ! | CAGTGTGTTATTCAAATTTG+GGG | - | tig0023416:49036-49055 | Msa1408810:CDS | 30.0% |
| AGCAATTTCAATTTCATCCA+AGG | + | tig0023416:49216-49235 | None:intergenic | 30.0% | |
| CATATACTCAAGTTTAAGTC+AGG | + | tig0023416:49317-49336 | None:intergenic | 30.0% | |
| CTGACTTAAACTTGAGTATA+TGG | - | tig0023416:49315-49334 | Msa1408810:intron | 30.0% | |
| ATGTGTTCAGTACTCTATTA+AGG | + | tig0023416:49505-49524 | None:intergenic | 30.0% | |
| !! | TTAATAGAGTACTGAACACA+TGG | - | tig0023416:49504-49523 | Msa1408810:CDS | 30.0% |
| !! | TAATAGAGTACTGAACACAT+GGG | - | tig0023416:49505-49524 | Msa1408810:CDS | 30.0% |
| ! | CAGTGTGTTATTCAAATTTG+GGG | - | tig0023416:49036-49055 | Msa1408810:CDS | 30.0% |
| AGCAATTTCAATTTCATCCA+AGG | + | tig0023416:49216-49235 | None:intergenic | 30.0% | |
| CATATACTCAAGTTTAAGTC+AGG | + | tig0023416:49317-49336 | None:intergenic | 30.0% | |
| CTGACTTAAACTTGAGTATA+TGG | - | tig0023416:49315-49334 | Msa1408810:intron | 30.0% | |
| ATGTGTTCAGTACTCTATTA+AGG | + | tig0023416:49505-49524 | None:intergenic | 30.0% | |
| !! | TTAATAGAGTACTGAACACA+TGG | - | tig0023416:49504-49523 | Msa1408810:CDS | 30.0% |
| !! | TAATAGAGTACTGAACACAT+GGG | - | tig0023416:49505-49524 | Msa1408810:CDS | 30.0% |
| ! | CATGACACTGATTGTGAATT+TGG | - | tig0023416:48979-48998 | Msa1408810:CDS | 35.0% |
| GCAACAATTTGTCTTTGATG+TGG | + | tig0023416:49098-49117 | None:intergenic | 35.0% | |
| ATCCAAGGATGTGCTTATTT+GGG | + | tig0023416:49201-49220 | None:intergenic | 35.0% | |
| ATTCCATGTACTTGTGAAAG+AGG | - | tig0023416:49562-49581 | Msa1408810:CDS | 35.0% | |
| AAAGTCTTCATCCTCATTAC+TGG | + | tig0023416:49783-49802 | None:intergenic | 35.0% | |
| ! | AGACTTTTCCCAAAGTAAGA+TGG | - | tig0023416:49796-49815 | Msa1408810:CDS | 35.0% |
| ! | GACTTTTCCCAAAGTAAGAT+GGG | - | tig0023416:49797-49816 | Msa1408810:CDS | 35.0% |
| ! | ACTTTTCCCAAAGTAAGATG+GGG | - | tig0023416:49798-49817 | Msa1408810:CDS | 35.0% |
| CAAATTCCCCATCTTACTTT+GGG | + | tig0023416:49807-49826 | None:intergenic | 35.0% | |
| TCAAATTCCCCATCTTACTT+TGG | + | tig0023416:49808-49827 | None:intergenic | 35.0% | |
| ! | CATGACACTGATTGTGAATT+TGG | - | tig0023416:48979-48998 | Msa1408810:CDS | 35.0% |
| GCAACAATTTGTCTTTGATG+TGG | + | tig0023416:49098-49117 | None:intergenic | 35.0% | |
| ATCCAAGGATGTGCTTATTT+GGG | + | tig0023416:49201-49220 | None:intergenic | 35.0% | |
| ATTCCATGTACTTGTGAAAG+AGG | - | tig0023416:49562-49581 | Msa1408810:CDS | 35.0% | |
| AAAGTCTTCATCCTCATTAC+TGG | + | tig0023416:49783-49802 | None:intergenic | 35.0% | |
| ! | AGACTTTTCCCAAAGTAAGA+TGG | - | tig0023416:49796-49815 | Msa1408810:CDS | 35.0% |
| ! | GACTTTTCCCAAAGTAAGAT+GGG | - | tig0023416:49797-49816 | Msa1408810:CDS | 35.0% |
| ! | ACTTTTCCCAAAGTAAGATG+GGG | - | tig0023416:49798-49817 | Msa1408810:CDS | 35.0% |
| CAAATTCCCCATCTTACTTT+GGG | + | tig0023416:49807-49826 | None:intergenic | 35.0% | |
| TCAAATTCCCCATCTTACTT+TGG | + | tig0023416:49808-49827 | None:intergenic | 35.0% | |
| CATGCCTTCTTCTCATATGT+CGG | + | tig0023416:48963-48982 | None:intergenic | 40.0% | |
| ! | GTCAATACTTTTCGACCAGT+AGG | - | tig0023416:49001-49020 | Msa1408810:CDS | 40.0% |
| CATCCAAGGATGTGCTTATT+TGG | + | tig0023416:49202-49221 | None:intergenic | 40.0% | |
| AATTTGAGTGCAAGAAGGCA+TGG | + | tig0023416:49294-49313 | None:intergenic | 40.0% | |
| TCAGGAATTTGAGTGCAAGA+AGG | + | tig0023416:49299-49318 | None:intergenic | 40.0% | |
| TCTCCTCTTTCACAAGTACA+TGG | + | tig0023416:49568-49587 | None:intergenic | 40.0% | |
| CTTGTGAAAGAGGAGAATCA+AGG | - | tig0023416:49572-49591 | Msa1408810:CDS | 40.0% | |
| TGTACACAGTAATGCATCCA+AGG | - | tig0023416:49706-49725 | Msa1408810:intron | 40.0% | |
| GTACACAGTAATGCATCCAA+GGG | - | tig0023416:49707-49726 | Msa1408810:intron | 40.0% | |
| TCTTCATCCTCATTACTGGT+GGG | + | tig0023416:49779-49798 | None:intergenic | 40.0% | |
| CATGCCTTCTTCTCATATGT+CGG | + | tig0023416:48963-48982 | None:intergenic | 40.0% | |
| ! | GTCAATACTTTTCGACCAGT+AGG | - | tig0023416:49001-49020 | Msa1408810:CDS | 40.0% |
| CATCCAAGGATGTGCTTATT+TGG | + | tig0023416:49202-49221 | None:intergenic | 40.0% | |
| AATTTGAGTGCAAGAAGGCA+TGG | + | tig0023416:49294-49313 | None:intergenic | 40.0% | |
| TCAGGAATTTGAGTGCAAGA+AGG | + | tig0023416:49299-49318 | None:intergenic | 40.0% | |
| TCTCCTCTTTCACAAGTACA+TGG | + | tig0023416:49568-49587 | None:intergenic | 40.0% | |
| CTTGTGAAAGAGGAGAATCA+AGG | - | tig0023416:49572-49591 | Msa1408810:CDS | 40.0% | |
| TGTACACAGTAATGCATCCA+AGG | - | tig0023416:49706-49725 | Msa1408810:intron | 40.0% | |
| GTACACAGTAATGCATCCAA+GGG | - | tig0023416:49707-49726 | Msa1408810:intron | 40.0% | |
| TCTTCATCCTCATTACTGGT+GGG | + | tig0023416:49779-49798 | None:intergenic | 40.0% | |
| ! | TGTGCCGACATATGAGAAGA+AGG | - | tig0023416:48956-48975 | Msa1408810:CDS | 45.0% |
| TCCTTCTGTGAGAAGCGAAT+CGG | + | tig0023416:49120-49139 | None:intergenic | 45.0% | |
| TTCTCACAGAAGGAGAAGCT+TGG | - | tig0023416:49126-49145 | Msa1408810:intron | 45.0% | |
| ! | GGGTTTTCTTGGACACCAAT+TGG | - | tig0023416:49166-49185 | Msa1408810:intron | 45.0% |
| TGCCCAAATAAGCACATCCT+TGG | - | tig0023416:49196-49215 | Msa1408810:CDS | 45.0% | |
| TACTGAACACATGGGTGACA+TGG | - | tig0023416:49513-49532 | Msa1408810:CDS | 45.0% | |
| ATCACGGAACAAGACATGCA+AGG | - | tig0023416:49538-49557 | Msa1408810:CDS | 45.0% | |
| CAGTAATGCATCCAAGGGAA+TGG | - | tig0023416:49712-49731 | Msa1408810:intron | 45.0% | |
| TAATGCATCCAAGGGAATGG+TGG | - | tig0023416:49715-49734 | Msa1408810:CDS | 45.0% | |
| GGAATGGTGGCTGATGAAAA+GGG | - | tig0023416:49728-49747 | Msa1408810:CDS | 45.0% | |
| GTGGCTGATGAAAAGGGAAA+AGG | - | tig0023416:49734-49753 | Msa1408810:CDS | 45.0% | |
| GTCTTCATCCTCATTACTGG+TGG | + | tig0023416:49780-49799 | None:intergenic | 45.0% | |
| ! | TGTGCCGACATATGAGAAGA+AGG | - | tig0023416:48956-48975 | Msa1408810:CDS | 45.0% |
| TCCTTCTGTGAGAAGCGAAT+CGG | + | tig0023416:49120-49139 | None:intergenic | 45.0% | |
| TTCTCACAGAAGGAGAAGCT+TGG | - | tig0023416:49126-49145 | Msa1408810:intron | 45.0% | |
| ! | GGGTTTTCTTGGACACCAAT+TGG | - | tig0023416:49166-49185 | Msa1408810:intron | 45.0% |
| TGCCCAAATAAGCACATCCT+TGG | - | tig0023416:49196-49215 | Msa1408810:CDS | 45.0% | |
| TACTGAACACATGGGTGACA+TGG | - | tig0023416:49513-49532 | Msa1408810:CDS | 45.0% | |
| ATCACGGAACAAGACATGCA+AGG | - | tig0023416:49538-49557 | Msa1408810:CDS | 45.0% | |
| CAGTAATGCATCCAAGGGAA+TGG | - | tig0023416:49712-49731 | Msa1408810:intron | 45.0% | |
| TAATGCATCCAAGGGAATGG+TGG | - | tig0023416:49715-49734 | Msa1408810:CDS | 45.0% | |
| GGAATGGTGGCTGATGAAAA+GGG | - | tig0023416:49728-49747 | Msa1408810:CDS | 45.0% | |
| GTGGCTGATGAAAAGGGAAA+AGG | - | tig0023416:49734-49753 | Msa1408810:CDS | 45.0% | |
| GTCTTCATCCTCATTACTGG+TGG | + | tig0023416:49780-49799 | None:intergenic | 45.0% | |
| CTGAAAGTCAGCATGCCTAC+TGG | + | tig0023416:49019-49038 | None:intergenic | 50.0% | |
| CTTGGCGAAGTAACCCAGAT+CGG | - | tig0023416:49144-49163 | Msa1408810:intron | 50.0% | |
| TTGGCGAAGTAACCCAGATC+GGG | - | tig0023416:49145-49164 | Msa1408810:intron | 50.0% | |
| ! | AACCCAGATCGGGGTTTTCT+TGG | - | tig0023416:49155-49174 | Msa1408810:intron | 50.0% |
| GTCCAAGAAAACCCCGATCT+GGG | + | tig0023416:49160-49179 | None:intergenic | 50.0% | |
| TGTCCAAGAAAACCCCGATC+TGG | + | tig0023416:49161-49180 | None:intergenic | 50.0% | |
| TCTTGGACACCAATTGGAGC+TGG | - | tig0023416:49172-49191 | Msa1408810:intron | 50.0% | |
| CTTGGACACCAATTGGAGCT+GGG | - | tig0023416:49173-49192 | Msa1408810:intron | 50.0% | |
| ! | GTGCAAGAAGGCATGGAAGA+AGG | + | tig0023416:49287-49306 | None:intergenic | 50.0% |
| CATGGGTGACATGGACATCA+CGG | - | tig0023416:49522-49541 | Msa1408810:CDS | 50.0% | |
| TTCATCAGCCACCATTCCCT+TGG | + | tig0023416:49726-49745 | None:intergenic | 50.0% | |
| GGGAATGGTGGCTGATGAAA+AGG | - | tig0023416:49727-49746 | Msa1408810:CDS | 50.0% | |
| ACAAGGACCCACCAGTAATG+AGG | - | tig0023416:49769-49788 | Msa1408810:CDS | 50.0% | |
| CTGAAAGTCAGCATGCCTAC+TGG | + | tig0023416:49019-49038 | None:intergenic | 50.0% | |
| CTTGGCGAAGTAACCCAGAT+CGG | - | tig0023416:49144-49163 | Msa1408810:intron | 50.0% | |
| TTGGCGAAGTAACCCAGATC+GGG | - | tig0023416:49145-49164 | Msa1408810:intron | 50.0% | |
| ! | AACCCAGATCGGGGTTTTCT+TGG | - | tig0023416:49155-49174 | Msa1408810:intron | 50.0% |
| GTCCAAGAAAACCCCGATCT+GGG | + | tig0023416:49160-49179 | None:intergenic | 50.0% | |
| TGTCCAAGAAAACCCCGATC+TGG | + | tig0023416:49161-49180 | None:intergenic | 50.0% | |
| TCTTGGACACCAATTGGAGC+TGG | - | tig0023416:49172-49191 | Msa1408810:intron | 50.0% | |
| CTTGGACACCAATTGGAGCT+GGG | - | tig0023416:49173-49192 | Msa1408810:intron | 50.0% | |
| ! | GTGCAAGAAGGCATGGAAGA+AGG | + | tig0023416:49287-49306 | None:intergenic | 50.0% |
| CATGGGTGACATGGACATCA+CGG | - | tig0023416:49522-49541 | Msa1408810:CDS | 50.0% | |
| TTCATCAGCCACCATTCCCT+TGG | + | tig0023416:49726-49745 | None:intergenic | 50.0% | |
| GGGAATGGTGGCTGATGAAA+AGG | - | tig0023416:49727-49746 | Msa1408810:CDS | 50.0% | |
| ACAAGGACCCACCAGTAATG+AGG | - | tig0023416:49769-49788 | Msa1408810:CDS | 50.0% | |
| !! | GCCGATTCGCTTCTCACAGA+AGG | - | tig0023416:49116-49135 | Msa1408810:intron | 55.0% |
| TGGCGAAGTAACCCAGATCG+GGG | - | tig0023416:49146-49165 | Msa1408810:intron | 55.0% | |
| TTTGGGCACCCAGCTCCAAT+TGG | + | tig0023416:49184-49203 | None:intergenic | 55.0% | |
| !! | GCCGATTCGCTTCTCACAGA+AGG | - | tig0023416:49116-49135 | Msa1408810:intron | 55.0% |
| TGGCGAAGTAACCCAGATCG+GGG | - | tig0023416:49146-49165 | Msa1408810:intron | 55.0% | |
| TTTGGGCACCCAGCTCCAAT+TGG | + | tig0023416:49184-49203 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023416 | gene | 48919 | 49853 | 48919 | ID=Msa1408810;Name=Msa1408810 |
| tig0023416 | mRNA | 48919 | 49853 | 48919 | ID=Msa1408810-mRNA-1;Parent=Msa1408810;Name=Msa1408810-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.66|0.75|4|0|202 |
| tig0023416 | exon | 49715 | 49853 | 49715 | ID=Msa1408810-mRNA-1:exon:25738;Parent=Msa1408810-mRNA-1 |
| tig0023416 | exon | 49435 | 49679 | 49435 | ID=Msa1408810-mRNA-1:exon:25737;Parent=Msa1408810-mRNA-1 |
| tig0023416 | exon | 49179 | 49261 | 49179 | ID=Msa1408810-mRNA-1:exon:25736;Parent=Msa1408810-mRNA-1 |
| tig0023416 | exon | 48919 | 49057 | 48919 | ID=Msa1408810-mRNA-1:exon:25735;Parent=Msa1408810-mRNA-1 |
| tig0023416 | CDS | 49715 | 49853 | 49715 | ID=Msa1408810-mRNA-1:cds;Parent=Msa1408810-mRNA-1 |
| tig0023416 | CDS | 49435 | 49679 | 49435 | ID=Msa1408810-mRNA-1:cds;Parent=Msa1408810-mRNA-1 |
| tig0023416 | CDS | 49179 | 49261 | 49179 | ID=Msa1408810-mRNA-1:cds;Parent=Msa1408810-mRNA-1 |
| tig0023416 | CDS | 48919 | 49057 | 48919 | ID=Msa1408810-mRNA-1:cds;Parent=Msa1408810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
