Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409400 | KEH44515.1 | 75.155 | 161 | 7 | 2 | 1 | 161 | 10 | 137 | 1.06e-59 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409400 | sp|O82155|DOF17_ARATH | 81.944 | 72 | 12 | 1 | 2 | 72 | 21 | 92 | 1.76e-36 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409400 | A0A072W2P5 | 75.155 | 161 | 7 | 2 | 1 | 161 | 10 | 137 | 5.04e-60 | 192 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1409400 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409400 | MtrunA17_Chr7g0251181 | 92.035 | 113 | 8 | 1 | 41 | 153 | 18 | 129 | 8.18e-56 | 172 |
| Msa1409400 | MtrunA17_Chr8g0341671 | 73.723 | 137 | 33 | 2 | 1 | 136 | 10 | 144 | 1.29e-54 | 171 |
| Msa1409400 | MtrunA17_Chr8g0374111 | 64.198 | 81 | 29 | 0 | 1 | 81 | 17 | 97 | 4.31e-33 | 117 |
| Msa1409400 | MtrunA17_Chr2g0328021 | 59.000 | 100 | 35 | 2 | 5 | 99 | 54 | 152 | 2.68e-32 | 116 |
| Msa1409400 | MtrunA17_Chr4g0010151 | 46.457 | 127 | 51 | 4 | 4 | 115 | 74 | 198 | 5.25e-29 | 109 |
| Msa1409400 | MtrunA17_Chr8g0374251 | 76.364 | 55 | 13 | 0 | 10 | 64 | 65 | 119 | 6.78e-28 | 105 |
| Msa1409400 | MtrunA17_Chr4g0031411 | 54.023 | 87 | 39 | 1 | 8 | 94 | 70 | 155 | 8.80e-28 | 105 |
| Msa1409400 | MtrunA17_Chr7g0223311 | 80.000 | 55 | 11 | 0 | 14 | 68 | 78 | 132 | 1.85e-27 | 105 |
| Msa1409400 | MtrunA17_Chr4g0061761 | 79.245 | 53 | 11 | 0 | 11 | 63 | 38 | 90 | 8.42e-27 | 102 |
| Msa1409400 | MtrunA17_Chr2g0308011 | 47.967 | 123 | 62 | 2 | 13 | 134 | 37 | 158 | 8.55e-27 | 100 |
| Msa1409400 | MtrunA17_Chr4g0047001 | 60.000 | 80 | 30 | 1 | 14 | 91 | 56 | 135 | 1.87e-26 | 102 |
| Msa1409400 | MtrunA17_Chr7g0237921 | 49.167 | 120 | 49 | 4 | 8 | 116 | 70 | 188 | 1.98e-26 | 102 |
| Msa1409400 | MtrunA17_Chr4g0030051 | 71.429 | 63 | 16 | 1 | 2 | 64 | 32 | 92 | 2.01e-26 | 101 |
| Msa1409400 | MtrunA17_Chr8g0346551 | 48.485 | 99 | 35 | 2 | 10 | 108 | 21 | 103 | 2.49e-26 | 100 |
| Msa1409400 | MtrunA17_Chr5g0411951 | 69.643 | 56 | 17 | 0 | 8 | 63 | 38 | 93 | 4.37e-26 | 100 |
| Msa1409400 | MtrunA17_Chr6g0453321 | 57.971 | 69 | 29 | 0 | 13 | 81 | 136 | 204 | 4.74e-26 | 102 |
| Msa1409400 | MtrunA17_Chr3g0127201 | 67.188 | 64 | 19 | 2 | 8 | 70 | 21 | 83 | 2.37e-25 | 98.2 |
| Msa1409400 | MtrunA17_Chr2g0326001 | 71.186 | 59 | 16 | 1 | 6 | 64 | 34 | 91 | 6.53e-25 | 97.1 |
| Msa1409400 | MtrunA17_Chr8g0367161 | 59.459 | 74 | 28 | 1 | 13 | 84 | 32 | 105 | 7.15e-25 | 97.8 |
| Msa1409400 | MtrunA17_Chr7g0217581 | 62.903 | 62 | 23 | 0 | 15 | 76 | 234 | 295 | 7.66e-25 | 99.8 |
| Msa1409400 | MtrunA17_Chr2g0282511 | 79.592 | 49 | 10 | 0 | 13 | 61 | 45 | 93 | 8.94e-25 | 97.1 |
| Msa1409400 | MtrunA17_Chr3g0126201 | 64.179 | 67 | 20 | 1 | 15 | 77 | 53 | 119 | 2.02e-24 | 96.7 |
| Msa1409400 | MtrunA17_Chr2g0283811 | 67.925 | 53 | 17 | 0 | 13 | 65 | 47 | 99 | 2.22e-24 | 92.8 |
| Msa1409400 | MtrunA17_Chr1g0188851 | 63.934 | 61 | 22 | 0 | 7 | 67 | 37 | 97 | 3.34e-24 | 95.1 |
| Msa1409400 | MtrunA17_Chr3g0117601 | 71.429 | 56 | 16 | 0 | 8 | 63 | 56 | 111 | 3.53e-24 | 95.9 |
| Msa1409400 | MtrunA17_Chr7g0254161 | 50.685 | 73 | 36 | 0 | 13 | 85 | 101 | 173 | 3.64e-24 | 97.1 |
| Msa1409400 | MtrunA17_Chr2g0282441 | 66.102 | 59 | 16 | 1 | 6 | 64 | 22 | 76 | 1.13e-23 | 94.7 |
| Msa1409400 | MtrunA17_Chr1g0177251 | 67.742 | 62 | 18 | 1 | 15 | 76 | 14 | 73 | 1.14e-23 | 94.0 |
| Msa1409400 | MtrunA17_Chr3g0092111 | 60.000 | 65 | 26 | 0 | 13 | 77 | 136 | 200 | 2.02e-23 | 95.1 |
| Msa1409400 | MtrunA17_Chr4g0047761 | 69.811 | 53 | 16 | 0 | 11 | 63 | 70 | 122 | 2.76e-23 | 93.2 |
| Msa1409400 | MtrunA17_Chr5g0417551 | 51.087 | 92 | 37 | 2 | 13 | 96 | 127 | 218 | 3.45e-23 | 93.6 |
| Msa1409400 | MtrunA17_Chr2g0282051 | 70.370 | 54 | 15 | 1 | 11 | 64 | 44 | 96 | 3.58e-23 | 92.4 |
| Msa1409400 | MtrunA17_Chr8g0355261 | 60.000 | 60 | 23 | 1 | 5 | 64 | 111 | 169 | 4.39e-23 | 94.0 |
| Msa1409400 | MtrunA17_Chr5g0417561 | 50.549 | 91 | 37 | 2 | 13 | 95 | 119 | 209 | 5.48e-23 | 93.2 |
| Msa1409400 | MtrunA17_Chr5g0417601 | 61.905 | 63 | 24 | 0 | 15 | 77 | 142 | 204 | 8.71e-23 | 92.8 |
| Msa1409400 | MtrunA17_Chr4g0042481 | 58.065 | 62 | 26 | 0 | 13 | 74 | 122 | 183 | 1.03e-22 | 93.2 |
| Msa1409400 | MtrunA17_Chr5g0417571 | 59.322 | 59 | 24 | 0 | 6 | 64 | 131 | 189 | 1.27e-22 | 91.7 |
| Msa1409400 | MtrunA17_Chr6g0460731 | 48.649 | 74 | 38 | 0 | 13 | 86 | 96 | 169 | 1.95e-22 | 91.7 |
| Msa1409400 | MtrunA17_Chr6g0460721 | 46.512 | 86 | 40 | 1 | 13 | 92 | 89 | 174 | 8.69e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409400 | AT1G51700.1 | 81.944 | 72 | 12 | 1 | 2 | 72 | 21 | 92 | 1.79e-37 | 127 |
| Msa1409400 | AT3G50410.1 | 69.863 | 73 | 18 | 2 | 1 | 69 | 14 | 86 | 1.28e-30 | 111 |
| Msa1409400 | AT5G66940.1 | 71.875 | 64 | 18 | 0 | 6 | 69 | 25 | 88 | 2.36e-30 | 110 |
| Msa1409400 | AT5G60850.1 | 62.963 | 81 | 26 | 1 | 9 | 89 | 47 | 123 | 7.17e-29 | 108 |
| Msa1409400 | AT3G45610.1 | 63.514 | 74 | 26 | 1 | 6 | 78 | 33 | 106 | 1.19e-28 | 106 |
| Msa1409400 | AT3G21270.1 | 80.702 | 57 | 10 | 1 | 13 | 68 | 29 | 85 | 1.61e-28 | 104 |
| Msa1409400 | AT1G07640.1 | 66.667 | 66 | 22 | 0 | 8 | 73 | 16 | 81 | 2.16e-28 | 106 |
| Msa1409400 | AT5G60200.1 | 55.056 | 89 | 38 | 1 | 6 | 92 | 48 | 136 | 4.20e-28 | 105 |
| Msa1409400 | AT1G07640.2 | 65.714 | 70 | 23 | 1 | 4 | 73 | 69 | 137 | 4.20e-28 | 106 |
| Msa1409400 | AT1G07640.3 | 66.667 | 66 | 22 | 0 | 8 | 73 | 80 | 145 | 5.45e-28 | 106 |
| Msa1409400 | AT5G65590.1 | 71.186 | 59 | 17 | 0 | 9 | 67 | 37 | 95 | 2.77e-27 | 104 |
| Msa1409400 | AT2G28810.2 | 68.966 | 58 | 18 | 0 | 7 | 64 | 71 | 128 | 6.86e-27 | 103 |
| Msa1409400 | AT2G28810.1 | 68.966 | 58 | 18 | 0 | 7 | 64 | 88 | 145 | 8.85e-27 | 103 |
| Msa1409400 | AT4G38000.1 | 58.824 | 85 | 33 | 2 | 6 | 89 | 33 | 116 | 1.41e-26 | 100 |
| Msa1409400 | AT1G21340.1 | 65.217 | 69 | 21 | 1 | 9 | 74 | 31 | 99 | 1.11e-25 | 99.0 |
| Msa1409400 | AT2G37590.1 | 66.667 | 63 | 20 | 1 | 2 | 64 | 79 | 140 | 2.66e-25 | 99.4 |
| Msa1409400 | AT3G55370.1 | 61.765 | 68 | 25 | 1 | 6 | 73 | 70 | 136 | 7.95e-25 | 97.8 |
| Msa1409400 | AT3G52440.1 | 48.421 | 95 | 42 | 1 | 15 | 109 | 27 | 114 | 8.31e-25 | 96.3 |
| Msa1409400 | AT3G55370.3 | 61.765 | 68 | 25 | 1 | 6 | 73 | 115 | 181 | 8.75e-25 | 98.6 |
| Msa1409400 | AT3G61850.2 | 50.000 | 92 | 37 | 2 | 10 | 99 | 59 | 143 | 8.98e-25 | 97.1 |
| Msa1409400 | AT3G61850.3 | 50.000 | 92 | 37 | 2 | 10 | 99 | 59 | 143 | 8.98e-25 | 97.1 |
| Msa1409400 | AT3G55370.2 | 61.765 | 68 | 25 | 1 | 6 | 73 | 70 | 136 | 9.04e-25 | 98.2 |
| Msa1409400 | AT2G28510.1 | 70.968 | 62 | 17 | 1 | 11 | 72 | 46 | 106 | 1.15e-24 | 96.7 |
| Msa1409400 | AT3G61850.1 | 50.000 | 92 | 37 | 2 | 10 | 99 | 71 | 155 | 1.22e-24 | 97.1 |
| Msa1409400 | AT3G61850.5 | 50.000 | 92 | 37 | 2 | 10 | 99 | 59 | 143 | 1.23e-24 | 97.1 |
| Msa1409400 | AT3G52440.2 | 48.421 | 95 | 42 | 1 | 15 | 109 | 46 | 133 | 1.23e-24 | 96.3 |
| Msa1409400 | AT1G28310.1 | 76.923 | 52 | 12 | 0 | 13 | 64 | 27 | 78 | 1.31e-24 | 97.1 |
| Msa1409400 | AT3G61850.4 | 50.000 | 92 | 37 | 2 | 10 | 99 | 71 | 155 | 1.41e-24 | 97.1 |
| Msa1409400 | AT1G28310.2 | 76.923 | 52 | 12 | 0 | 13 | 64 | 51 | 102 | 1.59e-24 | 97.4 |
| Msa1409400 | AT4G24060.1 | 68.966 | 58 | 17 | 1 | 8 | 64 | 47 | 104 | 2.45e-24 | 97.1 |
| Msa1409400 | AT3G47500.1 | 60.938 | 64 | 25 | 0 | 13 | 76 | 110 | 173 | 2.72e-24 | 97.8 |
| Msa1409400 | AT1G29160.1 | 69.231 | 52 | 16 | 0 | 13 | 64 | 62 | 113 | 2.77e-24 | 93.2 |
| Msa1409400 | AT5G02460.1 | 67.213 | 61 | 19 | 1 | 4 | 64 | 87 | 146 | 3.37e-24 | 97.1 |
| Msa1409400 | AT2G34140.1 | 69.231 | 52 | 16 | 0 | 13 | 64 | 58 | 109 | 3.93e-24 | 92.8 |
| Msa1409400 | AT1G69570.1 | 69.231 | 52 | 16 | 0 | 13 | 64 | 132 | 183 | 5.01e-24 | 96.7 |
| Msa1409400 | AT5G62940.1 | 71.429 | 56 | 16 | 0 | 8 | 63 | 68 | 123 | 1.05e-23 | 95.5 |
| Msa1409400 | AT2G46590.1 | 72.000 | 50 | 14 | 0 | 10 | 59 | 65 | 114 | 2.53e-23 | 94.4 |
| Msa1409400 | AT2G46590.2 | 72.000 | 50 | 14 | 0 | 10 | 59 | 77 | 126 | 2.84e-23 | 94.4 |
| Msa1409400 | AT4G00940.1 | 67.241 | 58 | 19 | 0 | 10 | 67 | 65 | 122 | 4.47e-23 | 92.8 |
| Msa1409400 | AT4G00940.3 | 67.241 | 58 | 19 | 0 | 10 | 67 | 65 | 122 | 4.47e-23 | 92.8 |
| Msa1409400 | AT4G00940.2 | 67.241 | 58 | 19 | 0 | 10 | 67 | 65 | 122 | 4.47e-23 | 92.8 |
| Msa1409400 | AT1G64620.1 | 69.643 | 56 | 16 | 1 | 8 | 62 | 43 | 98 | 5.43e-23 | 93.2 |
| Msa1409400 | AT1G47655.1 | 63.333 | 60 | 18 | 1 | 3 | 62 | 23 | 78 | 5.84e-23 | 90.5 |
| Msa1409400 | AT5G39660.3 | 61.290 | 62 | 24 | 0 | 13 | 74 | 138 | 199 | 6.20e-23 | 94.4 |
| Msa1409400 | AT5G39660.1 | 61.290 | 62 | 24 | 0 | 13 | 74 | 138 | 199 | 6.20e-23 | 94.4 |
| Msa1409400 | AT5G39660.2 | 61.290 | 62 | 24 | 0 | 13 | 74 | 138 | 199 | 6.20e-23 | 94.4 |
| Msa1409400 | AT4G21050.1 | 62.687 | 67 | 18 | 1 | 15 | 81 | 26 | 85 | 1.66e-22 | 89.4 |
| Msa1409400 | AT1G26790.1 | 65.385 | 52 | 18 | 0 | 13 | 64 | 111 | 162 | 4.24e-22 | 91.3 |
| Msa1409400 | AT5G62430.1 | 48.864 | 88 | 42 | 2 | 13 | 97 | 54 | 141 | 7.92e-22 | 89.4 |
| Msa1409400 | AT4G21040.1 | 58.462 | 65 | 21 | 2 | 15 | 79 | 27 | 85 | 2.49e-20 | 84.3 |
| Msa1409400 | AT4G21080.1 | 60.000 | 65 | 20 | 2 | 15 | 79 | 27 | 85 | 1.52e-19 | 82.4 |
| Msa1409400 | AT4G21030.1 | 61.364 | 44 | 17 | 0 | 15 | 58 | 23 | 66 | 9.66e-12 | 60.8 |
Find 34 sgRNAs with CRISPR-Local
Find 35 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTGGTTCTGGAAAATT+TGG | 0.150101 | tig0023519:+70387 | Msa1409390:intron |
| ATCTGGGTCGGGTCAGTTTC+TGG | 0.166656 | tig0023519:+70099 | Msa1409390:intron |
| GGACAAAAGGTGGTGCTTTA+AGG | 0.182533 | tig0023519:-70254 | Msa1409400:CDS |
| AGTTGTTCTTGTTCTGGTTC+TGG | 0.240682 | tig0023519:+70378 | Msa1409390:intron |
| GACCCGATTGTGAGAAATTT+TGG | 0.247972 | tig0023519:-70069 | Msa1409400:CDS |
| CATTTGAGTTGTTCTTGTTC+TGG | 0.278893 | tig0023519:+70372 | Msa1409390:intron |
| TTCTGGAAAATTTGGTTTCA+TGG | 0.282386 | tig0023519:+70395 | Msa1409390:intron |
| CAATCGGGTCAACATGAATC+TGG | 0.332686 | tig0023519:+70082 | Msa1409390:CDS |
| CACCTTACTCTTTGTCTTCG+TGG | 0.369682 | tig0023519:+70014 | Msa1409390:CDS |
| TAGCTTCCGTGCACCTTCCT+TGG | 0.374095 | tig0023519:+69941 | Msa1409390:CDS |
| TCACCAAAATTTCTCACAAT+CGG | 0.384976 | tig0023519:+70066 | Msa1409390:CDS |
| TTCGTTCTGCATGTTATAAT+CGG | 0.385397 | tig0023519:-69982 | Msa1409400:CDS |
| TTTCTTGTTCCAACACCAAC+TGG | 0.415369 | tig0023519:+70225 | Msa1409390:CDS |
| TGCGAAAGATATTGGACAAA+AGG | 0.445100 | tig0023519:-70267 | Msa1409400:CDS |
| CACCAAAATTTCTCACAATC+GGG | 0.458876 | tig0023519:+70067 | Msa1409390:CDS |
| ACAAAGAGTAAGGTGGAGAG+TGG | 0.467255 | tig0023519:-70006 | Msa1409400:CDS |
| TCTGGAAAATTTGGTTTCAT+GGG | 0.482955 | tig0023519:+70396 | Msa1409390:intron |
| GAAGAAGTGGATGATGTTGA+TGG | 0.514146 | tig0023519:+70147 | Msa1409390:CDS |
| GAGAATGCGGCCGTCGTCCA+AGG | 0.526115 | tig0023519:-69958 | Msa1409400:CDS |
| GGTCAACATGAATCTGGGTC+GGG | 0.544687 | tig0023519:+70088 | Msa1409390:intron |
| CACCACGAAGACAAAGAGTA+AGG | 0.558695 | tig0023519:-70016 | Msa1409400:CDS |
| GGGTCAACATGAATCTGGGT+CGG | 0.570528 | tig0023519:+70087 | Msa1409390:intron |
| AGGAACATACCAGTTGGTGT+TGG | 0.571016 | tig0023519:-70234 | Msa1409400:CDS |
| AATCGGGTCAACATGAATCT+GGG | 0.579145 | tig0023519:+70083 | Msa1409390:CDS |
| CGTGCACCTTCCTTGGACGA+CGG | 0.582438 | tig0023519:+69948 | Msa1409390:CDS |
| ATGCGGCCGTCGTCCAAGGA+AGG | 0.583986 | tig0023519:-69954 | Msa1409400:CDS |
| TGTTATAATCGGCGAGAATG+CGG | 0.605263 | tig0023519:-69971 | Msa1409400:CDS |
| CTTACTCTTTGTCTTCGTGG+TGG | 0.610675 | tig0023519:+70017 | Msa1409390:CDS |
| GTTGATGGAGAAGATGAAGA+TGG | 0.610885 | tig0023519:+70162 | Msa1409390:CDS |
| GAAAGATATTGGACAAAAGG+TGG | 0.625233 | tig0023519:-70264 | Msa1409400:CDS |
| GCTTTAAGGAACATACCAGT+TGG | 0.625252 | tig0023519:-70240 | Msa1409400:CDS |
| CGTCGTCCAAGGAAGGTGCA+CGG | 0.657720 | tig0023519:-69947 | Msa1409400:CDS |
| CACGAAGACAAAGAGTAAGG+TGG | 0.663000 | tig0023519:-70013 | Msa1409400:CDS |
| GTGTTGCTTGATTCACAACG+TGG | 0.731087 | tig0023519:+70348 | Msa1409390:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| GCAAAAATTGCGAAAGATAT+TGG | - | tig0023519:70048-70067 | Msa1409400:CDS | 30.0% | |
| TCACCAAAATTTCTCACAAT+CGG | + | tig0023519:70260-70279 | Msa1409390:intron | 30.0% | |
| !! | ATTGTGAGAAATTTTGGTGA+AGG | - | tig0023519:70260-70279 | Msa1409400:CDS | 30.0% |
| TTCGTTCTGCATGTTATAAT+CGG | - | tig0023519:70341-70360 | Msa1409400:CDS | 30.0% | |
| !! | TGTTCTGGTTCTGGAAAATT+TGG | + | tig0023519:69939-69958 | Msa1409390:CDS | 35.0% |
| !! | CATTTGAGTTGTTCTTGTTC+TGG | + | tig0023519:69954-69973 | Msa1409390:CDS | 35.0% |
| TGCGAAAGATATTGGACAAA+AGG | - | tig0023519:70056-70075 | Msa1409400:CDS | 35.0% | |
| GAAAGATATTGGACAAAAGG+TGG | - | tig0023519:70059-70078 | Msa1409400:CDS | 35.0% | |
| CACCAAAATTTCTCACAATC+GGG | + | tig0023519:70259-70278 | Msa1409390:intron | 35.0% | |
| !! | AGTTGTTCTTGTTCTGGTTC+TGG | + | tig0023519:69948-69967 | Msa1409390:CDS | 40.0% |
| !! | GCTTTAAGGAACATACCAGT+TGG | - | tig0023519:70083-70102 | Msa1409400:CDS | 40.0% |
| TTTCTTGTTCCAACACCAAC+TGG | + | tig0023519:70101-70120 | Msa1409390:intron | 40.0% | |
| ! | GTTGATGGAGAAGATGAAGA+TGG | + | tig0023519:70164-70183 | Msa1409390:CDS | 40.0% |
| GAAGAAGTGGATGATGTTGA+TGG | + | tig0023519:70179-70198 | Msa1409390:CDS | 40.0% | |
| ! | AACTTTTGCTGCTGAAGAAG+TGG | + | tig0023519:70192-70211 | Msa1409390:CDS | 40.0% |
| AATCGGGTCAACATGAATCT+GGG | + | tig0023519:70243-70262 | Msa1409390:intron | 40.0% | |
| ! | GACCCGATTGTGAGAAATTT+TGG | - | tig0023519:70254-70273 | Msa1409400:CDS | 40.0% |
| TGTTATAATCGGCGAGAATG+CGG | - | tig0023519:70352-70371 | Msa1409400:CDS | 40.0% | |
| !! | GTGTTGCTTGATTCACAACG+TGG | + | tig0023519:69978-69997 | Msa1409390:CDS | 45.0% |
| GGACAAAAGGTGGTGCTTTA+AGG | - | tig0023519:70069-70088 | Msa1409400:CDS | 45.0% | |
| ! | AGGAACATACCAGTTGGTGT+TGG | - | tig0023519:70089-70108 | Msa1409400:CDS | 45.0% |
| CAATCGGGTCAACATGAATC+TGG | + | tig0023519:70244-70263 | Msa1409390:intron | 45.0% | |
| CTTACTCTTTGTCTTCGTGG+TGG | + | tig0023519:70309-70328 | Msa1409390:intron | 45.0% | |
| CACCACGAAGACAAAGAGTA+AGG | - | tig0023519:70307-70326 | Msa1409400:CDS | 45.0% | |
| CACCTTACTCTTTGTCTTCG+TGG | + | tig0023519:70312-70331 | Msa1409390:intron | 45.0% | |
| CACGAAGACAAAGAGTAAGG+TGG | - | tig0023519:70310-70329 | Msa1409400:CDS | 45.0% | |
| ACAAAGAGTAAGGTGGAGAG+TGG | - | tig0023519:70317-70336 | Msa1409400:CDS | 45.0% | |
| GGTCAACATGAATCTGGGTC+GGG | + | tig0023519:70238-70257 | Msa1409390:intron | 50.0% | |
| GGGTCAACATGAATCTGGGT+CGG | + | tig0023519:70239-70258 | Msa1409390:intron | 50.0% | |
| ATCTGGGTCGGGTCAGTTTC+TGG | + | tig0023519:70227-70246 | Msa1409390:CDS | 55.0% | |
| TAGCTTCCGTGCACCTTCCT+TGG | + | tig0023519:70385-70404 | Msa1409390:intron | 55.0% | |
| CGTGCACCTTCCTTGGACGA+CGG | + | tig0023519:70378-70397 | Msa1409390:intron | 60.0% | |
| ! | CGTCGTCCAAGGAAGGTGCA+CGG | - | tig0023519:70376-70395 | Msa1409400:CDS | 60.0% |
| GAGAATGCGGCCGTCGTCCA+AGG | - | tig0023519:70365-70384 | Msa1409400:CDS | 65.0% | |
| ATGCGGCCGTCGTCCAAGGA+AGG | - | tig0023519:70369-70388 | Msa1409400:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023519 | gene | 69930 | 70415 | 69930 | ID=Msa1409400;Name=Msa1409400 |
| tig0023519 | mRNA | 69930 | 70415 | 69930 | ID=Msa1409400-mRNA-1;Parent=Msa1409400;Name=Msa1409400-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|161 |
| tig0023519 | exon | 69930 | 70415 | 69930 | ID=Msa1409400-mRNA-1:exon:26022;Parent=Msa1409400-mRNA-1 |
| tig0023519 | CDS | 69930 | 70415 | 69930 | ID=Msa1409400-mRNA-1:cds;Parent=Msa1409400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
