Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409910 | PNX82010.1 | 80.255 | 157 | 31 | 0 | 1 | 157 | 1 | 157 | 7.39e-91 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409910 | sp|P59468|LBD24_ARATH | 66.019 | 103 | 35 | 0 | 4 | 106 | 4 | 106 | 1.35e-46 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409910 | A0A2K3LTZ7 | 80.255 | 157 | 31 | 0 | 1 | 157 | 1 | 157 | 3.53e-91 | 271 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1409910 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409910 | MtrunA17_Chr5g0444351 | 75.796 | 157 | 26 | 1 | 1 | 157 | 1 | 145 | 3.78e-85 | 246 |
| Msa1409910 | MtrunA17_Chr7g0225111 | 94.828 | 116 | 6 | 0 | 1 | 116 | 1 | 116 | 1.25e-81 | 236 |
| Msa1409910 | MtrunA17_Chr2g0311601 | 50.476 | 105 | 52 | 0 | 6 | 110 | 14 | 118 | 7.01e-39 | 129 |
| Msa1409910 | MtrunA17_Chr5g0438091 | 46.970 | 132 | 70 | 0 | 6 | 137 | 40 | 171 | 2.72e-37 | 126 |
| Msa1409910 | MtrunA17_Chr5g0437571 | 50.459 | 109 | 54 | 0 | 6 | 114 | 7 | 115 | 4.11e-37 | 125 |
| Msa1409910 | MtrunA17_Chr4g0043421 | 50.000 | 106 | 53 | 0 | 6 | 111 | 16 | 121 | 5.64e-36 | 122 |
| Msa1409910 | MtrunA17_Chr3g0106101 | 47.222 | 108 | 57 | 0 | 6 | 113 | 8 | 115 | 1.56e-35 | 121 |
| Msa1409910 | MtrunA17_Chr3g0129071 | 51.887 | 106 | 51 | 0 | 6 | 111 | 48 | 153 | 1.79e-35 | 123 |
| Msa1409910 | MtrunA17_Chr4g0058651 | 51.402 | 107 | 52 | 0 | 6 | 112 | 12 | 118 | 3.09e-35 | 121 |
| Msa1409910 | MtrunA17_Chr3g0114061 | 52.000 | 100 | 48 | 0 | 6 | 105 | 9 | 108 | 7.72e-35 | 119 |
| Msa1409910 | MtrunA17_Chr7g0227511 | 46.774 | 124 | 57 | 1 | 6 | 120 | 12 | 135 | 1.49e-34 | 119 |
| Msa1409910 | MtrunA17_Chr3g0117121 | 56.989 | 93 | 40 | 0 | 6 | 98 | 11 | 103 | 1.95e-34 | 119 |
| Msa1409910 | MtrunA17_Chr4g0030001 | 46.429 | 112 | 59 | 1 | 1 | 111 | 20 | 131 | 4.15e-34 | 118 |
| Msa1409910 | MtrunA17_Chr3g0097221 | 49.550 | 111 | 56 | 0 | 6 | 116 | 8 | 118 | 1.19e-33 | 119 |
| Msa1409910 | MtrunA17_Chr3g0115431 | 47.573 | 103 | 54 | 0 | 6 | 108 | 10 | 112 | 4.16e-33 | 116 |
| Msa1409910 | MtrunA17_Chr6g0449641 | 43.077 | 130 | 74 | 0 | 6 | 135 | 10 | 139 | 9.96e-33 | 113 |
| Msa1409910 | MtrunA17_Chr1g0200201 | 40.845 | 142 | 76 | 1 | 6 | 147 | 73 | 206 | 3.83e-32 | 114 |
| Msa1409910 | MtrunA17_Chr5g0432451 | 45.865 | 133 | 68 | 1 | 6 | 138 | 44 | 172 | 4.32e-32 | 114 |
| Msa1409910 | MtrunA17_Chr5g0402611 | 48.544 | 103 | 53 | 0 | 6 | 108 | 9 | 111 | 6.17e-32 | 115 |
| Msa1409910 | MtrunA17_Chr8g0353981 | 50.467 | 107 | 51 | 1 | 6 | 112 | 8 | 112 | 1.22e-31 | 113 |
| Msa1409910 | MtrunA17_Chr6g0449651 | 51.613 | 93 | 45 | 0 | 6 | 98 | 68 | 160 | 1.97e-30 | 109 |
| Msa1409910 | MtrunA17_Chr3g0113891 | 46.392 | 97 | 52 | 0 | 6 | 102 | 15 | 111 | 6.95e-30 | 107 |
| Msa1409910 | MtrunA17_Chr5g0437401 | 44.554 | 101 | 56 | 0 | 6 | 106 | 12 | 112 | 1.27e-29 | 106 |
| Msa1409910 | MtrunA17_Chr7g0260971 | 46.602 | 103 | 54 | 1 | 6 | 107 | 15 | 117 | 2.02e-29 | 107 |
| Msa1409910 | MtrunA17_Chr6g0452691 | 36.111 | 144 | 91 | 1 | 4 | 146 | 8 | 151 | 3.74e-28 | 102 |
| Msa1409910 | MtrunA17_Chr6g0460951 | 43.396 | 106 | 59 | 1 | 6 | 110 | 41 | 146 | 5.51e-28 | 103 |
| Msa1409910 | MtrunA17_Chr1g0184281 | 47.000 | 100 | 52 | 1 | 6 | 104 | 16 | 115 | 2.34e-27 | 101 |
| Msa1409910 | MtrunA17_Chr6g0452671 | 41.414 | 99 | 58 | 0 | 4 | 102 | 10 | 108 | 8.48e-26 | 97.4 |
| Msa1409910 | MtrunA17_Chr8g0374601 | 40.000 | 105 | 63 | 0 | 2 | 106 | 23 | 127 | 8.86e-26 | 99.0 |
| Msa1409910 | MtrunA17_Chr7g0261031 | 39.007 | 141 | 83 | 2 | 6 | 143 | 9 | 149 | 1.26e-25 | 97.4 |
| Msa1409910 | MtrunA17_Chr8g0351701 | 41.509 | 106 | 61 | 1 | 6 | 110 | 24 | 129 | 2.81e-25 | 96.7 |
| Msa1409910 | MtrunA17_Chr1g0184271 | 44.118 | 102 | 56 | 1 | 6 | 106 | 13 | 114 | 5.54e-25 | 95.9 |
| Msa1409910 | MtrunA17_Chr7g0245871 | 44.554 | 101 | 55 | 1 | 6 | 105 | 28 | 128 | 9.62e-25 | 95.5 |
| Msa1409910 | MtrunA17_Chr8g0374581 | 43.810 | 105 | 58 | 1 | 2 | 105 | 5 | 109 | 3.73e-24 | 93.6 |
| Msa1409910 | MtrunA17_Chr6g0452661 | 37.273 | 110 | 68 | 1 | 4 | 112 | 8 | 117 | 3.85e-24 | 94.4 |
| Msa1409910 | MtrunA17_Chr8g0374591 | 37.143 | 105 | 66 | 0 | 2 | 106 | 5 | 109 | 5.77e-24 | 90.5 |
| Msa1409910 | MtrunA17_Chr5g0435641 | 41.176 | 102 | 59 | 1 | 6 | 106 | 8 | 109 | 4.37e-23 | 90.1 |
| Msa1409910 | MtrunA17_Chr8g0351721 | 41.176 | 102 | 59 | 1 | 6 | 106 | 19 | 120 | 1.21e-22 | 89.4 |
| Msa1409910 | MtrunA17_Chr8g0342351 | 39.604 | 101 | 61 | 0 | 6 | 106 | 13 | 113 | 6.00e-22 | 88.6 |
| Msa1409910 | MtrunA17_Chr4g0055441 | 36.111 | 108 | 68 | 1 | 6 | 112 | 3 | 110 | 6.84e-22 | 85.9 |
| Msa1409910 | MtrunA17_Chr4g0059901 | 42.000 | 100 | 58 | 0 | 6 | 105 | 11 | 110 | 9.84e-22 | 88.2 |
| Msa1409910 | MtrunA17_Chr5g0439111 | 36.283 | 113 | 70 | 2 | 4 | 114 | 8 | 120 | 8.81e-21 | 85.1 |
| Msa1409910 | MtrunA17_Chr6g0460941 | 40.909 | 88 | 51 | 1 | 6 | 92 | 8 | 95 | 3.58e-20 | 79.7 |
| Msa1409910 | MtrunA17_Chr2g0330201 | 33.663 | 101 | 67 | 0 | 6 | 106 | 20 | 120 | 2.02e-18 | 79.7 |
| Msa1409910 | MtrunA17_Chr4g0040831 | 37.209 | 86 | 54 | 0 | 2 | 87 | 12 | 97 | 3.56e-18 | 77.4 |
| Msa1409910 | MtrunA17_Chr7g0245861 | 42.697 | 89 | 48 | 2 | 6 | 91 | 13 | 101 | 5.21e-18 | 75.5 |
| Msa1409910 | MtrunA17_Chr2g0326041 | 45.614 | 57 | 31 | 0 | 1 | 57 | 29 | 85 | 1.54e-15 | 67.8 |
| Msa1409910 | MtrunA17_Chr4g0046201 | 32.558 | 86 | 58 | 0 | 6 | 91 | 7 | 92 | 4.00e-13 | 65.1 |
| Msa1409910 | MtrunA17_Chr2g0326051 | 41.270 | 63 | 37 | 0 | 49 | 111 | 4 | 66 | 8.99e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409910 | AT3G26660.1 | 66.019 | 103 | 35 | 0 | 4 | 106 | 4 | 106 | 1.37e-47 | 150 |
| Msa1409910 | AT3G26620.1 | 66.019 | 103 | 35 | 0 | 4 | 106 | 4 | 106 | 1.70e-47 | 150 |
| Msa1409910 | AT2G30130.1 | 51.852 | 108 | 52 | 0 | 6 | 113 | 9 | 116 | 5.41e-38 | 128 |
| Msa1409910 | AT1G31320.1 | 62.791 | 86 | 32 | 0 | 6 | 91 | 14 | 99 | 1.96e-35 | 121 |
| Msa1409910 | AT1G07900.1 | 43.902 | 123 | 64 | 1 | 6 | 128 | 34 | 151 | 9.92e-35 | 120 |
| Msa1409910 | AT5G63090.4 | 46.957 | 115 | 61 | 0 | 6 | 120 | 12 | 126 | 3.06e-34 | 119 |
| Msa1409910 | AT5G63090.3 | 46.957 | 115 | 61 | 0 | 6 | 120 | 12 | 126 | 3.06e-34 | 119 |
| Msa1409910 | AT5G63090.2 | 46.957 | 115 | 61 | 0 | 6 | 120 | 12 | 126 | 3.06e-34 | 119 |
| Msa1409910 | AT5G63090.1 | 46.957 | 115 | 61 | 0 | 6 | 120 | 12 | 126 | 3.06e-34 | 119 |
| Msa1409910 | AT2G30340.2 | 50.000 | 106 | 53 | 0 | 6 | 111 | 54 | 159 | 3.39e-34 | 121 |
| Msa1409910 | AT2G30340.1 | 50.000 | 106 | 53 | 0 | 6 | 111 | 53 | 158 | 3.49e-34 | 120 |
| Msa1409910 | AT2G28500.1 | 45.946 | 111 | 60 | 0 | 1 | 111 | 51 | 161 | 5.11e-34 | 119 |
| Msa1409910 | AT3G27650.1 | 50.000 | 100 | 50 | 0 | 6 | 105 | 40 | 139 | 3.52e-33 | 115 |
| Msa1409910 | AT5G66870.1 | 48.515 | 101 | 52 | 0 | 6 | 106 | 8 | 108 | 2.69e-32 | 117 |
| Msa1409910 | AT2G23660.2 | 48.515 | 101 | 52 | 0 | 6 | 106 | 6 | 106 | 9.13e-32 | 115 |
| Msa1409910 | AT2G23660.3 | 48.515 | 101 | 52 | 0 | 6 | 106 | 6 | 106 | 9.13e-32 | 115 |
| Msa1409910 | AT2G23660.1 | 48.515 | 101 | 52 | 0 | 6 | 106 | 6 | 106 | 9.13e-32 | 115 |
| Msa1409910 | AT2G40470.2 | 51.923 | 104 | 50 | 0 | 6 | 109 | 21 | 124 | 1.04e-31 | 112 |
| Msa1409910 | AT1G65620.1 | 48.077 | 104 | 54 | 0 | 6 | 109 | 10 | 113 | 1.78e-31 | 112 |
| Msa1409910 | AT1G65620.4 | 48.077 | 104 | 54 | 0 | 6 | 109 | 10 | 113 | 1.78e-31 | 112 |
| Msa1409910 | AT1G65620.3 | 48.077 | 104 | 54 | 0 | 6 | 109 | 10 | 113 | 1.78e-31 | 112 |
| Msa1409910 | AT1G65620.5 | 48.077 | 104 | 54 | 0 | 6 | 109 | 10 | 113 | 1.78e-31 | 112 |
| Msa1409910 | AT1G65620.2 | 48.077 | 104 | 54 | 0 | 6 | 109 | 10 | 113 | 1.78e-31 | 112 |
| Msa1409910 | AT2G40470.1 | 51.923 | 104 | 50 | 0 | 6 | 109 | 46 | 149 | 1.80e-31 | 112 |
| Msa1409910 | AT1G16530.1 | 49.515 | 103 | 51 | 1 | 6 | 107 | 15 | 117 | 4.44e-31 | 110 |
| Msa1409910 | AT3G11090.1 | 44.660 | 103 | 57 | 0 | 6 | 108 | 12 | 114 | 8.51e-31 | 109 |
| Msa1409910 | AT4G00210.1 | 37.500 | 144 | 80 | 3 | 6 | 139 | 12 | 155 | 7.36e-27 | 100 |
| Msa1409910 | AT3G50510.1 | 34.899 | 149 | 81 | 2 | 6 | 154 | 13 | 145 | 1.90e-26 | 99.4 |
| Msa1409910 | AT3G50510.2 | 34.899 | 149 | 81 | 2 | 6 | 154 | 13 | 145 | 1.90e-26 | 99.4 |
| Msa1409910 | AT2G42430.1 | 44.762 | 105 | 57 | 1 | 6 | 109 | 16 | 120 | 2.35e-26 | 100 |
| Msa1409910 | AT3G03760.1 | 44.554 | 101 | 55 | 1 | 6 | 105 | 52 | 152 | 2.78e-26 | 100 |
| Msa1409910 | AT5G06080.1 | 43.119 | 109 | 61 | 1 | 6 | 113 | 8 | 116 | 4.03e-25 | 95.1 |
| Msa1409910 | AT2G42440.1 | 45.000 | 100 | 54 | 1 | 6 | 104 | 8 | 107 | 5.17e-25 | 96.7 |
| Msa1409910 | AT3G13850.1 | 35.714 | 154 | 91 | 2 | 6 | 151 | 37 | 190 | 9.47e-25 | 96.7 |
| Msa1409910 | AT3G58190.1 | 44.118 | 102 | 56 | 1 | 6 | 106 | 12 | 113 | 1.07e-24 | 95.1 |
| Msa1409910 | AT4G00220.1 | 42.308 | 104 | 59 | 1 | 8 | 110 | 20 | 123 | 1.38e-23 | 92.4 |
| Msa1409910 | AT2G45420.1 | 42.308 | 104 | 59 | 1 | 8 | 110 | 40 | 143 | 5.12e-23 | 91.7 |
| Msa1409910 | AT2G45410.1 | 41.000 | 100 | 58 | 1 | 8 | 106 | 19 | 118 | 1.66e-22 | 89.0 |
| Msa1409910 | AT5G35900.1 | 37.624 | 101 | 63 | 0 | 6 | 106 | 6 | 106 | 1.16e-21 | 87.0 |
| Msa1409910 | AT3G47870.1 | 37.500 | 104 | 65 | 0 | 6 | 109 | 37 | 140 | 1.55e-21 | 89.0 |
| Msa1409910 | AT2G31310.1 | 34.314 | 102 | 66 | 1 | 6 | 106 | 8 | 109 | 1.31e-19 | 81.3 |
| Msa1409910 | AT1G06280.1 | 36.782 | 87 | 55 | 0 | 6 | 92 | 25 | 111 | 4.84e-17 | 75.1 |
| Msa1409910 | AT1G72980.1 | 35.000 | 100 | 65 | 0 | 6 | 105 | 14 | 113 | 6.65e-17 | 74.7 |
| Msa1409910 | AT2G19820.1 | 32.979 | 94 | 62 | 1 | 6 | 98 | 13 | 106 | 1.21e-14 | 66.6 |
| Msa1409910 | AT4G22700.1 | 33.043 | 115 | 71 | 3 | 1 | 110 | 1 | 114 | 3.46e-13 | 64.3 |
| Msa1409910 | AT5G15060.1 | 43.243 | 74 | 38 | 2 | 6 | 76 | 18 | 90 | 9.21e-13 | 62.4 |
| Msa1409910 | AT1G36000.1 | 29.545 | 88 | 62 | 0 | 4 | 91 | 8 | 95 | 1.66e-11 | 58.5 |
Find 31 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTCAAATTGTTGATTT+TGG | 0.080390 | tig0023577:-14889 | None:intergenic |
| AGGATTCAAGATCCTGTTTA+TGG | 0.232394 | tig0023577:+14773 | Msa1409910:CDS |
| GGCCTAGTCAAACTCCTAAT+TGG | 0.295938 | tig0023577:+15002 | Msa1409910:CDS |
| GGATCATTGGGAGGGAAATA+TGG | 0.321654 | tig0023577:-14268 | None:intergenic |
| GCTTCTGTTCACCGAATCTA+TGG | 0.327300 | tig0023577:+14301 | Msa1409910:CDS |
| AGCAAATCTTTGAGGATCAT+TGG | 0.352548 | tig0023577:-14281 | None:intergenic |
| AACTCCTAATTGGTTCAATT+AGG | 0.365498 | tig0023577:+15012 | Msa1409910:CDS |
| TTAACATCATGATTTATAGA+AGG | 0.383363 | tig0023577:+14191 | None:intergenic |
| AAGTCCTAATTGAACCAATT+AGG | 0.385923 | tig0023577:-15016 | None:intergenic |
| ATCCCAACACATCCATAAAC+AGG | 0.432009 | tig0023577:-14785 | None:intergenic |
| GCAAATCTTTGAGGATCATT+GGG | 0.442273 | tig0023577:-14280 | None:intergenic |
| CTCCAAAATCAACAATTTGA+AGG | 0.458414 | tig0023577:+14887 | Msa1409910:CDS |
| ATCTATGGTGGTAGCAATGT+TGG | 0.480363 | tig0023577:+14316 | Msa1409910:CDS |
| TGTATTTAGAAGCACAATGT+AGG | 0.497154 | tig0023577:+14753 | Msa1409910:CDS |
| ATCCTGTTTATGGATGTGTT+GGG | 0.518295 | tig0023577:+14783 | Msa1409910:CDS |
| TCAAGATACAGAAGTTGAGT+TGG | 0.518830 | tig0023577:+14832 | Msa1409910:CDS |
| TATGGAGAGAAAATGCAATC+AGG | 0.521384 | tig0023577:-14250 | None:intergenic |
| ACAACATGGAGCAGATTCAA+TGG | 0.528352 | tig0023577:+14981 | Msa1409910:CDS |
| CATTGCTACCACCATAGATT+CGG | 0.528587 | tig0023577:-14312 | None:intergenic |
| GATCCTGTTTATGGATGTGT+TGG | 0.530554 | tig0023577:+14782 | Msa1409910:CDS |
| TGAACAGAAGCAAATCTTTG+AGG | 0.534397 | tig0023577:-14289 | None:intergenic |
| AATACATAGAATTTGCAGCT+TGG | 0.550687 | tig0023577:-14736 | None:intergenic |
| CTTGCAAGAGTCAAAGAAGA+AGG | 0.562843 | tig0023577:+14221 | Msa1409910:CDS |
| ATCTTTGAGGATCATTGGGA+GGG | 0.584186 | tig0023577:-14276 | None:intergenic |
| AATCTTTGAGGATCATTGGG+AGG | 0.604113 | tig0023577:-14277 | None:intergenic |
| TCTGTTCACCGAATCTATGG+TGG | 0.619615 | tig0023577:+14304 | Msa1409910:CDS |
| AACCAATTAGGAGTTTGACT+AGG | 0.647531 | tig0023577:-15004 | None:intergenic |
| TCCATGTTGTTACTATGTAG+TGG | 0.647940 | tig0023577:-14968 | None:intergenic |
| GCCACTACATAGTAACAACA+TGG | 0.651155 | tig0023577:+14967 | Msa1409910:CDS |
| GCTTGGTGTCGTACATAGTG+AGG | 0.654586 | tig0023577:-14719 | None:intergenic |
| GGAGAGAAAATGCAATCAGG+AGG | 0.655607 | tig0023577:-14247 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAAATAATCTTATTG+TGG | + | tig0023577:14674-14693 | Msa1409910:intron | 10.0% |
| !!! | ATTTTAAAATAATCTTATTG+TGG | + | tig0023577:14674-14693 | Msa1409910:intron | 10.0% |
| !! | AACATTATATAATTATAGCA+TGG | + | tig0023577:14582-14601 | Msa1409910:intron | 15.0% |
| !! | AACATTATATAATTATAGCA+TGG | + | tig0023577:14582-14601 | Msa1409910:intron | 15.0% |
| !! | TACCATGTAATATATTATTG+TGG | + | tig0023577:14436-14455 | Msa1409910:intron | 20.0% |
| !! | TTCCACAATAATATATTACA+TGG | - | tig0023577:14441-14460 | None:intergenic | 20.0% |
| !! | TCAATGTAAGAATCAATATT+TGG | + | tig0023577:14479-14498 | Msa1409910:intron | 20.0% |
| !! | TACCATGTAATATATTATTG+TGG | + | tig0023577:14436-14455 | Msa1409910:intron | 20.0% |
| !! | TTCCACAATAATATATTACA+TGG | - | tig0023577:14441-14460 | None:intergenic | 20.0% |
| !! | TCAATGTAAGAATCAATATT+TGG | + | tig0023577:14479-14498 | Msa1409910:intron | 20.0% |
| AATACATAGAATTTGCAGCT+TGG | - | tig0023577:14739-14758 | None:intergenic | 30.0% | |
| ! | TGTATTTAGAAGCACAATGT+AGG | + | tig0023577:14753-14772 | Msa1409910:CDS | 30.0% |
| CTCCAAAATCAACAATTTGA+AGG | + | tig0023577:14887-14906 | Msa1409910:CDS | 30.0% | |
| !!! | CACCTTCAAATTGTTGATTT+TGG | - | tig0023577:14892-14911 | None:intergenic | 30.0% |
| AATACATAGAATTTGCAGCT+TGG | - | tig0023577:14739-14758 | None:intergenic | 30.0% | |
| ! | TGTATTTAGAAGCACAATGT+AGG | + | tig0023577:14753-14772 | Msa1409910:CDS | 30.0% |
| CTCCAAAATCAACAATTTGA+AGG | + | tig0023577:14887-14906 | Msa1409910:CDS | 30.0% | |
| !!! | CACCTTCAAATTGTTGATTT+TGG | - | tig0023577:14892-14911 | None:intergenic | 30.0% |
| TATGGAGAGAAAATGCAATC+AGG | - | tig0023577:14253-14272 | None:intergenic | 35.0% | |
| ! | GCAAATCTTTGAGGATCATT+GGG | - | tig0023577:14283-14302 | None:intergenic | 35.0% |
| ! | AGCAAATCTTTGAGGATCAT+TGG | - | tig0023577:14284-14303 | None:intergenic | 35.0% |
| TGAACAGAAGCAAATCTTTG+AGG | - | tig0023577:14292-14311 | None:intergenic | 35.0% | |
| AGGATTCAAGATCCTGTTTA+TGG | + | tig0023577:14773-14792 | Msa1409910:CDS | 35.0% | |
| ATCCTGTTTATGGATGTGTT+GGG | + | tig0023577:14783-14802 | Msa1409910:CDS | 35.0% | |
| TCAAGATACAGAAGTTGAGT+TGG | + | tig0023577:14832-14851 | Msa1409910:CDS | 35.0% | |
| TCCATGTTGTTACTATGTAG+TGG | - | tig0023577:14971-14990 | None:intergenic | 35.0% | |
| AACCAATTAGGAGTTTGACT+AGG | - | tig0023577:15007-15026 | None:intergenic | 35.0% | |
| TATGGAGAGAAAATGCAATC+AGG | - | tig0023577:14253-14272 | None:intergenic | 35.0% | |
| ! | GCAAATCTTTGAGGATCATT+GGG | - | tig0023577:14283-14302 | None:intergenic | 35.0% |
| ! | AGCAAATCTTTGAGGATCAT+TGG | - | tig0023577:14284-14303 | None:intergenic | 35.0% |
| TGAACAGAAGCAAATCTTTG+AGG | - | tig0023577:14292-14311 | None:intergenic | 35.0% | |
| AGGATTCAAGATCCTGTTTA+TGG | + | tig0023577:14773-14792 | Msa1409910:CDS | 35.0% | |
| ATCCTGTTTATGGATGTGTT+GGG | + | tig0023577:14783-14802 | Msa1409910:CDS | 35.0% | |
| TCAAGATACAGAAGTTGAGT+TGG | + | tig0023577:14832-14851 | Msa1409910:CDS | 35.0% | |
| TCCATGTTGTTACTATGTAG+TGG | - | tig0023577:14971-14990 | None:intergenic | 35.0% | |
| AACCAATTAGGAGTTTGACT+AGG | - | tig0023577:15007-15026 | None:intergenic | 35.0% | |
| CTTGCAAGAGTCAAAGAAGA+AGG | + | tig0023577:14221-14240 | Msa1409910:CDS | 40.0% | |
| ! | ATCTTTGAGGATCATTGGGA+GGG | - | tig0023577:14279-14298 | None:intergenic | 40.0% |
| ! | AATCTTTGAGGATCATTGGG+AGG | - | tig0023577:14280-14299 | None:intergenic | 40.0% |
| CATTGCTACCACCATAGATT+CGG | - | tig0023577:14315-14334 | None:intergenic | 40.0% | |
| ATCTATGGTGGTAGCAATGT+TGG | + | tig0023577:14316-14335 | Msa1409910:CDS | 40.0% | |
| CAATGTTGGAAAAACGCTTC+AGG | + | tig0023577:14330-14349 | Msa1409910:CDS | 40.0% | |
| GATCCTGTTTATGGATGTGT+TGG | + | tig0023577:14782-14801 | Msa1409910:CDS | 40.0% | |
| ATCCCAACACATCCATAAAC+AGG | - | tig0023577:14788-14807 | None:intergenic | 40.0% | |
| GCCACTACATAGTAACAACA+TGG | + | tig0023577:14967-14986 | Msa1409910:CDS | 40.0% | |
| ACAACATGGAGCAGATTCAA+TGG | + | tig0023577:14981-15000 | Msa1409910:CDS | 40.0% | |
| CTTGCAAGAGTCAAAGAAGA+AGG | + | tig0023577:14221-14240 | Msa1409910:CDS | 40.0% | |
| ! | ATCTTTGAGGATCATTGGGA+GGG | - | tig0023577:14279-14298 | None:intergenic | 40.0% |
| ! | AATCTTTGAGGATCATTGGG+AGG | - | tig0023577:14280-14299 | None:intergenic | 40.0% |
| CATTGCTACCACCATAGATT+CGG | - | tig0023577:14315-14334 | None:intergenic | 40.0% | |
| ATCTATGGTGGTAGCAATGT+TGG | + | tig0023577:14316-14335 | Msa1409910:CDS | 40.0% | |
| CAATGTTGGAAAAACGCTTC+AGG | + | tig0023577:14330-14349 | Msa1409910:CDS | 40.0% | |
| GATCCTGTTTATGGATGTGT+TGG | + | tig0023577:14782-14801 | Msa1409910:CDS | 40.0% | |
| ATCCCAACACATCCATAAAC+AGG | - | tig0023577:14788-14807 | None:intergenic | 40.0% | |
| GCCACTACATAGTAACAACA+TGG | + | tig0023577:14967-14986 | Msa1409910:CDS | 40.0% | |
| ACAACATGGAGCAGATTCAA+TGG | + | tig0023577:14981-15000 | Msa1409910:CDS | 40.0% | |
| GGAGAGAAAATGCAATCAGG+AGG | - | tig0023577:14250-14269 | None:intergenic | 45.0% | |
| GGATCATTGGGAGGGAAATA+TGG | - | tig0023577:14271-14290 | None:intergenic | 45.0% | |
| GCTTCTGTTCACCGAATCTA+TGG | + | tig0023577:14301-14320 | Msa1409910:CDS | 45.0% | |
| TCTGTTCACCGAATCTATGG+TGG | + | tig0023577:14304-14323 | Msa1409910:CDS | 45.0% | |
| GGCCTAGTCAAACTCCTAAT+TGG | + | tig0023577:15002-15021 | Msa1409910:CDS | 45.0% | |
| GGAGAGAAAATGCAATCAGG+AGG | - | tig0023577:14250-14269 | None:intergenic | 45.0% | |
| GGATCATTGGGAGGGAAATA+TGG | - | tig0023577:14271-14290 | None:intergenic | 45.0% | |
| GCTTCTGTTCACCGAATCTA+TGG | + | tig0023577:14301-14320 | Msa1409910:CDS | 45.0% | |
| TCTGTTCACCGAATCTATGG+TGG | + | tig0023577:14304-14323 | Msa1409910:CDS | 45.0% | |
| GGCCTAGTCAAACTCCTAAT+TGG | + | tig0023577:15002-15021 | Msa1409910:CDS | 45.0% | |
| !! | GCTTGGTGTCGTACATAGTG+AGG | - | tig0023577:14722-14741 | None:intergenic | 50.0% |
| !! | GCTTGGTGTCGTACATAGTG+AGG | - | tig0023577:14722-14741 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023577 | gene | 14199 | 15033 | 14199 | ID=Msa1409910;Name=Msa1409910 |
| tig0023577 | mRNA | 14199 | 15033 | 14199 | ID=Msa1409910-mRNA-1;Parent=Msa1409910;Name=Msa1409910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|157 |
| tig0023577 | exon | 14199 | 14351 | 14199 | ID=Msa1409910-mRNA-1:exon:26293;Parent=Msa1409910-mRNA-1 |
| tig0023577 | exon | 14713 | 15033 | 14713 | ID=Msa1409910-mRNA-1:exon:26294;Parent=Msa1409910-mRNA-1 |
| tig0023577 | CDS | 14199 | 14351 | 14199 | ID=Msa1409910-mRNA-1:cds;Parent=Msa1409910-mRNA-1 |
| tig0023577 | CDS | 14713 | 15033 | 14713 | ID=Msa1409910-mRNA-1:cds;Parent=Msa1409910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
