AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1409990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1409990 MtrunA17_Chr8g0360761 52.941 204 77 4 33 236 2 186 7.87e-58 182
Msa1409990 MtrunA17_Chr4g0051261 44.845 194 75 7 68 235 101 288 5.21e-41 142
Msa1409990 MtrunA17_Chr2g0293491 43.158 190 76 7 72 235 105 288 9.99e-39 136
Msa1409990 MtrunA17_Chr8g0358921 39.487 195 90 6 65 235 146 336 8.44e-34 124
Msa1409990 MtrunA17_Chr1g0187371 36.022 186 92 5 72 234 127 308 3.24e-27 106
Msa1409990 MtrunA17_Chr4g0002001 35.789 190 83 4 74 234 124 303 6.03e-27 105
Msa1409990 MtrunA17_Chr6g0483151 35.106 188 90 6 72 234 114 294 1.08e-24 100
Msa1409990 MtrunA17_Chr4g0057791 34.872 195 92 7 72 235 322 512 2.58e-23 97.8
Msa1409990 MtrunA17_Chr3g0099951 33.155 187 95 5 72 234 116 296 3.19e-23 97.1
Msa1409990 MtrunA17_Chr7g0248461 30.292 274 142 11 2 234 59 324 1.29e-22 94.7
Msa1409990 MtrunA17_Chr3g0093391 34.555 191 96 4 72 237 139 325 3.60e-22 94.7
Msa1409990 MtrunA17_Chr3g0093571 34.031 191 97 4 72 237 141 327 5.87e-22 94.0
Msa1409990 MtrunA17_Chr4g0045841 28.333 240 126 9 28 234 114 340 5.63e-20 87.8
Msa1409990 MtrunA17_Chr8g0377071 32.821 195 96 7 72 235 487 677 8.63e-20 87.8
Msa1409990 MtrunA17_Chr8g0387401 29.187 209 84 5 72 238 156 342 2.26e-19 85.9
Msa1409990 MtrunA17_Chr4g0030151 31.841 201 102 9 66 238 136 329 8.31e-19 84.3
Msa1409990 MtrunA17_Chr8g0348481 27.076 277 155 10 2 238 58 327 1.92e-18 83.2
Msa1409990 MtrunA17_Chr3g0141871 32.338 201 87 6 69 234 133 319 2.95e-18 82.8
Msa1409990 MtrunA17_Chr3g0130781 30.918 207 100 6 72 237 127 331 4.71e-18 82.4
Msa1409990 MtrunA17_Chr4g0030231 29.688 192 105 5 72 238 144 330 5.75e-18 82.0
Msa1409990 MtrunA17_Chr3g0122781 29.907 214 100 6 68 235 514 723 6.77e-18 82.4
Msa1409990 MtrunA17_Chr8g0378831 31.500 200 90 7 69 234 133 319 8.11e-18 81.3
Msa1409990 MtrunA17_Chr5g0397261 32.323 198 98 7 69 238 142 331 8.24e-18 81.3
Msa1409990 MtrunA17_Chr8g0384301 31.844 179 79 8 74 235 404 556 1.93e-17 80.9
Msa1409990 MtrunA17_Chr3g0102571 29.752 242 129 9 16 234 143 366 6.78e-17 79.0
Msa1409990 MtrunA17_Chr4g0061141 29.688 192 99 8 72 235 207 390 1.04e-16 79.0
Msa1409990 MtrunA17_Chr1g0203881 30.168 179 93 6 72 237 143 302 1.17e-16 78.6
Msa1409990 MtrunA17_Chr6g0453711 40.187 107 43 3 58 149 200 300 2.51e-16 77.8
Msa1409990 MtrunA17_Chr5g0402551 31.073 177 90 8 72 235 240 397 7.20e-16 76.3
Msa1409990 MtrunA17_Chr3g0102601 33.880 183 91 9 69 234 35 204 2.10e-15 73.2
Msa1409990 MtrunA17_Chr1g0194201 27.778 234 110 11 39 234 147 359 2.21e-15 74.7
Msa1409990 MtrunA17_Chr5g0396361 28.796 191 106 5 72 237 242 427 2.76e-15 74.7
Msa1409990 MtrunA17_Chr4g0045261 31.111 180 94 7 68 235 239 400 3.21e-15 74.3
Msa1409990 MtrunA17_Chr2g0324461 42.000 100 38 4 72 156 243 337 3.80e-15 74.3
Msa1409990 MtrunA17_Chr8g0374701 29.834 181 95 8 68 235 230 391 4.26e-15 73.9
Msa1409990 MtrunA17_Chr7g0218071 41.935 93 35 2 72 149 222 310 5.56e-15 73.9
Msa1409990 MtrunA17_Chr7g0273601 30.890 191 96 8 72 234 209 391 6.22e-15 73.6
Msa1409990 MtrunA17_Chr1g0191221 30.964 197 94 9 72 237 224 409 7.66e-15 73.2
Msa1409990 MtrunA17_Chr7g0274941 28.652 178 87 7 74 234 120 274 1.34e-14 71.6
Msa1409990 MtrunA17_Chr3g0131861 40.860 93 36 3 72 149 199 287 1.43e-14 72.4
Msa1409990 MtrunA17_Chr2g0284091 28.922 204 83 8 72 234 142 324 1.66e-14 72.0
Msa1409990 MtrunA17_Chr3g0130151 28.571 175 90 5 74 235 349 501 1.85e-14 72.4
Msa1409990 MtrunA17_Chr7g0256001 31.844 179 92 7 68 234 243 403 1.94e-14 72.0
Msa1409990 MtrunA17_Chr1g0202831 29.609 179 91 5 74 239 516 672 2.35e-14 72.0
Msa1409990 MtrunA17_Chr1g0193081 27.350 234 111 11 39 234 147 359 2.36e-14 71.6
Msa1409990 MtrunA17_Chr8g0386981 29.714 175 88 5 74 235 513 665 2.79e-14 72.0
Msa1409990 MtrunA17_Chr8g0385971 40.860 93 36 3 72 149 192 280 2.80e-14 71.6
Msa1409990 MtrunA17_Chr7g0270371 27.039 233 111 11 39 233 147 358 3.12e-14 71.2
Msa1409990 MtrunA17_Chr4g0030241 39.326 89 37 2 74 149 7 91 3.90e-14 68.6
Msa1409990 MtrunA17_Chr2g0320011 28.431 204 84 8 72 234 190 372 4.79e-14 70.9
Msa1409990 MtrunA17_Chr3g0132671 25.806 186 99 5 68 239 146 306 6.02e-14 70.5
Msa1409990 MtrunA17_Chr6g0453681 25.946 185 100 4 68 239 116 276 8.05e-14 70.1
Msa1409990 MtrunA17_Chr4g0066691 37.634 93 39 3 72 149 206 294 8.44e-14 70.1
Msa1409990 MtrunA17_Chr4g0040141 38.710 93 38 2 72 149 231 319 1.03e-13 70.1
Msa1409990 MtrunA17_Chr4g0065851 29.016 193 102 8 72 234 129 316 1.21e-13 69.7
Msa1409990 MtrunA17_Chr2g0317501 39.785 93 37 3 72 149 236 324 1.24e-13 69.7
Msa1409990 MtrunA17_Chr1g0201571 33.871 124 57 5 41 149 203 316 1.47e-13 69.7
Msa1409990 MtrunA17_Chr2g0277011 28.947 228 103 11 39 228 162 368 2.79e-13 68.6
Msa1409990 MtrunA17_Chr2g0286421 28.723 188 104 7 72 234 204 386 4.16e-13 68.2
Msa1409990 MtrunA17_Chr2g0287271 27.692 195 104 9 72 235 129 317 7.22e-13 67.4
Msa1409990 MtrunA17_Chr1g0173541 31.737 167 76 8 85 235 167 311 7.72e-13 67.4
Msa1409990 MtrunA17_Chr6g0468751 28.276 145 86 3 68 199 116 255 8.21e-13 67.4
Msa1409990 MtrunA17_Chr8g0383451 36.559 93 40 3 72 149 100 188 9.24e-13 67.0
Msa1409990 MtrunA17_Chr7g0246591 26.923 234 112 11 39 234 213 425 1.21e-12 66.6
Msa1409990 MtrunA17_Chr1g0157131 32.796 186 88 10 66 235 169 333 1.28e-12 66.6
Msa1409990 MtrunA17_Chr8g0350311 26.222 225 107 11 39 225 211 414 1.62e-12 66.2
Msa1409990 MtrunA17_Chr1g0205931 26.230 183 98 6 72 238 161 322 3.61e-12 65.5
Msa1409990 MtrunA17_Chr6g0482681 40.860 93 39 4 72 149 193 284 7.41e-12 64.7
Msa1409990 MtrunA17_Chr4g0051191 31.429 175 84 8 74 235 267 418 7.42e-12 64.3
Msa1409990 MtrunA17_Chr7g0257751 31.928 166 75 8 85 234 173 316 7.55e-12 64.3
Msa1409990 MtrunA17_Chr1g0188991 37.234 94 38 2 75 151 119 208 1.59e-11 63.5
Msa1409990 MtrunA17_Chr5g0424531 29.545 176 88 8 74 236 119 271 1.89e-11 62.4
Msa1409990 MtrunA17_Chr3g0127571 30.769 195 95 10 62 235 226 401 2.15e-11 63.2
Msa1409990 MtrunA17_Chr5g0432491 26.178 191 87 6 68 235 120 279 2.19e-11 63.2
Msa1409990 MtrunA17_Chr4g0059951 33.333 165 76 9 85 235 188 332 4.16e-11 62.4
Msa1409990 MtrunA17_Chr6g0453671 24.324 185 103 4 68 239 116 276 4.89e-11 62.0
Msa1409990 MtrunA17_Chr4g0053951 27.941 136 78 5 31 152 176 305 6.13e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1409990 AT3G48750.1 41.799 189 80 6 72 235 105 288 1.73e-37 133
Msa1409990 AT1G76540.1 37.566 189 85 6 72 234 123 304 4.90e-29 111
Msa1409990 AT1G20930.1 36.842 190 93 5 68 234 121 306 4.03e-28 108
Msa1409990 AT2G38620.4 35.519 183 93 4 74 234 62 241 7.76e-28 107
Msa1409990 AT1G18040.1 34.921 189 89 7 72 234 112 292 1.94e-27 108
Msa1409990 AT2G38620.2 35.519 183 93 4 74 234 124 303 2.50e-27 107
Msa1409990 AT3G54180.1 36.111 180 90 4 77 234 125 301 7.08e-26 103
Msa1409990 AT1G73690.1 34.392 189 90 7 72 234 111 291 2.53e-24 100
Msa1409990 AT2G46070.1 32.719 217 110 9 49 238 124 331 4.19e-24 99.4
Msa1409990 AT2G46070.3 32.719 217 110 9 49 238 158 365 8.29e-24 99.0
Msa1409990 AT3G59790.1 31.148 244 132 10 23 238 114 349 2.00e-23 97.8
Msa1409990 AT1G66750.1 34.225 187 93 5 72 234 113 293 3.28e-23 96.7
Msa1409990 AT1G01560.2 29.455 275 143 10 2 234 61 326 1.38e-22 95.1
Msa1409990 AT4G01370.1 30.182 275 141 12 2 234 64 329 1.92e-22 94.7
Msa1409990 AT5G10270.1 34.555 191 96 5 72 237 142 328 3.14e-22 95.1
Msa1409990 AT5G64960.1 32.461 191 100 5 72 237 142 328 3.07e-21 92.4
Msa1409990 AT5G64960.2 31.280 211 107 6 61 237 69 275 3.87e-21 91.7
Msa1409990 AT1G07880.2 32.461 191 99 6 69 234 134 319 4.53e-20 88.2
Msa1409990 AT4G11330.1 28.520 277 151 10 2 238 64 333 4.72e-20 88.2
Msa1409990 AT5G63370.2 32.995 197 93 8 72 235 270 460 5.86e-20 88.6
Msa1409990 AT5G63370.3 32.995 197 93 8 72 235 270 460 5.86e-20 88.6
Msa1409990 AT2G46070.2 33.880 183 87 8 69 224 142 317 6.54e-20 87.0
Msa1409990 AT1G01560.3 28.727 275 144 11 2 234 61 325 7.32e-20 87.4
Msa1409990 AT5G63370.7 32.995 197 93 8 72 235 404 594 8.34e-20 88.2
Msa1409990 AT5G63370.8 32.995 197 93 8 72 235 404 594 8.34e-20 88.2
Msa1409990 AT5G63370.4 32.995 197 93 8 72 235 404 594 8.34e-20 88.2
Msa1409990 AT5G63370.6 32.995 197 93 8 72 235 404 594 8.34e-20 88.2
Msa1409990 AT5G63370.1 32.995 197 93 8 72 235 404 594 8.34e-20 88.2
Msa1409990 AT1G67580.1 32.308 195 97 7 72 235 508 698 1.84e-19 87.4
Msa1409990 AT1G67580.2 32.308 195 97 7 72 235 508 698 1.84e-19 87.4
Msa1409990 AT5G63610.1 33.173 208 94 7 72 237 132 336 4.41e-19 85.9
Msa1409990 AT1G03740.2 31.500 200 85 8 72 235 315 498 6.07e-19 85.9
Msa1409990 AT1G03740.1 31.500 200 85 8 72 235 315 498 6.48e-19 85.9
Msa1409990 AT3G45640.1 31.980 197 86 9 72 234 142 324 1.50e-18 84.0
Msa1409990 AT2G38620.3 43.333 90 34 2 74 149 124 210 1.09e-17 80.1
Msa1409990 AT2G38620.1 43.333 90 34 2 74 149 124 210 1.09e-17 80.1
Msa1409990 AT1G59580.2 32.124 193 98 6 69 234 133 319 1.40e-17 81.3
Msa1409990 AT1G59580.1 32.124 193 98 6 69 234 133 319 1.40e-17 81.3
Msa1409990 AT1G10210.2 30.808 198 94 7 69 234 133 319 6.33e-17 79.3
Msa1409990 AT1G10210.3 30.808 198 94 7 69 234 133 319 6.33e-17 79.3
Msa1409990 AT1G10210.1 30.808 198 94 7 69 234 133 319 6.33e-17 79.3
Msa1409990 AT3G04530.1 32.948 173 84 7 74 234 117 269 9.91e-17 77.8
Msa1409990 AT2G18170.1 30.964 197 95 7 69 234 133 319 2.11e-16 77.8
Msa1409990 AT2G43790.1 30.729 192 102 6 72 238 167 352 2.21e-16 77.8
Msa1409990 AT4G36450.1 30.256 195 98 6 69 235 133 317 2.34e-16 77.4
Msa1409990 AT1G53570.7 31.429 175 85 6 74 235 319 471 3.74e-16 77.4
Msa1409990 AT1G53570.6 31.429 175 85 6 74 235 319 471 4.03e-16 77.4
Msa1409990 AT1G53570.4 31.429 175 85 6 74 235 319 471 4.47e-16 77.4
Msa1409990 AT1G53570.2 31.429 175 85 6 74 235 319 471 4.47e-16 77.4
Msa1409990 AT1G53570.3 31.429 175 85 6 74 235 319 471 4.47e-16 77.4
Msa1409990 AT1G53570.1 31.429 175 85 6 74 235 319 471 4.47e-16 77.4
Msa1409990 AT1G12580.1 30.168 179 93 6 70 235 144 303 6.90e-16 76.6
Msa1409990 AT4G22940.2 28.358 201 94 7 72 237 206 391 3.39e-15 74.7
Msa1409990 AT4G22940.1 28.358 201 94 7 72 237 206 391 3.98e-15 74.3
Msa1409990 AT1G08650.1 29.143 175 91 6 74 235 120 274 4.43e-15 73.2
Msa1409990 AT1G71530.1 29.319 191 105 6 72 237 249 434 4.63e-15 74.3
Msa1409990 AT1G71530.2 28.796 191 106 5 72 237 249 434 4.76e-15 74.3
Msa1409990 AT1G06390.2 27.468 233 112 10 39 234 142 354 5.38e-15 73.9
Msa1409990 AT1G06390.1 27.468 233 112 10 39 234 142 354 5.38e-15 73.9
Msa1409990 AT5G63370.9 36.296 135 58 5 72 182 270 400 7.06e-15 73.6
Msa1409990 AT5G50860.1 40.860 93 36 3 72 149 216 304 7.37e-15 73.9
Msa1409990 AT5G44290.7 29.897 194 100 8 72 237 239 424 7.73e-15 73.6
Msa1409990 AT1G01560.4 30.114 176 89 5 2 149 61 230 8.38e-15 72.4
Msa1409990 AT1G01560.1 30.114 176 89 5 2 149 61 230 8.38e-15 72.4
Msa1409990 AT5G44290.6 29.897 194 100 8 72 237 239 424 8.41e-15 73.6
Msa1409990 AT5G63370.5 36.296 135 58 5 72 182 404 534 9.13e-15 73.6
Msa1409990 AT5G63370.10 36.296 135 58 5 72 182 404 534 9.13e-15 73.6
Msa1409990 AT5G39420.1 29.412 187 104 6 72 234 207 389 9.78e-15 73.6
Msa1409990 AT1G33770.1 41.935 93 35 3 72 149 243 331 9.80e-15 73.6
Msa1409990 AT5G50860.2 40.860 93 36 3 72 149 216 304 1.02e-14 73.2
Msa1409990 AT1G73670.1 29.293 198 101 9 69 234 191 381 1.08e-14 73.2
Msa1409990 AT5G44290.2 29.897 194 100 8 72 237 239 424 1.19e-14 73.2
Msa1409990 AT5G44290.5 29.897 194 100 8 72 237 239 424 1.19e-14 73.2
Msa1409990 AT5G44290.4 29.897 194 100 8 72 237 239 424 1.19e-14 73.2
Msa1409990 AT5G44290.1 29.897 194 100 8 72 237 239 424 1.19e-14 73.2
Msa1409990 AT5G44290.3 29.897 194 100 8 72 237 239 424 1.19e-14 73.2
Msa1409990 AT3G01085.1 31.088 193 94 8 72 234 217 400 1.28e-14 73.2
Msa1409990 AT3G01085.2 31.088 193 94 8 72 234 217 400 1.28e-14 73.2
Msa1409990 AT3G01085.3 31.088 193 94 8 72 234 217 400 1.31e-14 73.2
Msa1409990 AT5G19450.2 34.463 177 78 9 75 235 162 316 1.35e-14 73.2
Msa1409990 AT5G19450.1 34.463 177 78 9 75 235 162 316 1.35e-14 73.2
Msa1409990 AT3G19100.1 30.688 189 95 9 68 239 246 415 1.42e-14 73.2
Msa1409990 AT1G18670.3 40.000 90 42 3 72 149 233 322 1.47e-14 73.2
Msa1409990 AT1G18670.1 40.000 90 42 3 72 149 233 322 1.54e-14 72.8
Msa1409990 AT1G71530.3 29.891 184 99 5 72 230 249 427 1.56e-14 72.8
Msa1409990 AT1G18670.2 40.000 90 42 3 72 149 233 322 1.67e-14 72.8
Msa1409990 AT4G18710.2 33.333 126 62 5 39 149 106 224 1.78e-14 71.2
Msa1409990 AT3G29160.3 27.027 185 98 5 68 239 117 277 2.26e-14 72.0
Msa1409990 AT1G74330.1 39.560 91 42 3 72 149 223 313 2.45e-14 72.4
Msa1409990 AT4G10010.1 29.293 198 96 9 72 237 78 263 2.51e-14 72.0
Msa1409990 AT1G74330.2 39.560 91 42 3 72 149 223 313 2.59e-14 72.4
Msa1409990 AT1G74330.3 39.560 91 42 3 72 149 223 313 2.61e-14 72.4
Msa1409990 AT1G49580.1 30.814 172 87 8 77 235 261 413 2.86e-14 72.0
Msa1409990 AT4G18710.1 26.050 238 109 10 39 234 112 324 3.49e-14 71.6
Msa1409990 AT4G10010.2 29.293 198 96 9 72 237 258 443 3.80e-14 71.6
Msa1409990 AT3G29160.1 27.027 185 98 5 68 239 117 277 3.92e-14 71.6
Msa1409990 AT3G29160.2 27.027 185 98 5 68 239 117 277 3.92e-14 71.6
Msa1409990 AT5G14640.1 27.778 234 110 11 39 234 146 358 4.53e-14 71.2
Msa1409990 AT5G14640.2 27.778 234 110 11 39 234 146 358 4.53e-14 71.2
Msa1409990 AT1G07880.1 38.542 96 42 2 69 151 134 225 7.02e-14 69.3
Msa1409990 AT1G08650.2 30.178 169 85 6 74 229 120 268 9.01e-14 69.3
Msa1409990 AT5G19010.1 29.843 191 105 7 72 235 129 317 1.25e-13 70.1
Msa1409990 AT1G53570.5 30.864 162 77 5 74 235 319 445 1.26e-13 70.1
Msa1409990 AT1G54610.1 38.710 93 38 3 72 149 220 308 1.41e-13 70.1
Msa1409990 AT1G54610.3 38.710 93 38 3 72 149 220 308 1.41e-13 70.1
Msa1409990 AT1G54610.2 38.710 93 38 3 72 149 220 308 1.41e-13 70.1
Msa1409990 AT1G09840.11 28.070 228 105 11 39 228 28 234 1.41e-13 68.9
Msa1409990 AT2G30980.1 26.180 233 115 9 39 234 144 356 1.61e-13 69.7
Msa1409990 AT1G63700.1 30.286 175 87 5 74 235 505 657 1.98e-13 69.7
Msa1409990 AT1G63700.2 30.286 175 87 5 74 235 505 657 1.98e-13 69.7
Msa1409990 AT1G53050.2 30.851 188 100 9 72 234 236 418 2.13e-13 69.7
Msa1409990 AT1G53050.1 30.851 188 100 9 72 234 236 418 2.13e-13 69.7
Msa1409990 AT1G71530.4 38.710 93 38 2 72 149 249 337 2.28e-13 68.9
Msa1409990 AT5G39440.1 28.889 180 90 6 68 234 116 270 2.32e-13 69.3
Msa1409990 AT3G01090.3 25.946 185 100 4 68 239 116 276 2.48e-13 69.3
Msa1409990 AT3G01090.1 25.946 185 100 4 68 239 116 276 2.48e-13 69.3
Msa1409990 AT1G57870.3 28.509 228 104 11 39 228 154 360 2.56e-13 68.9
Msa1409990 AT3G01090.2 25.946 185 100 4 68 239 139 299 2.57e-13 69.3
Msa1409990 AT5G26751.1 26.809 235 111 11 39 234 141 353 2.66e-13 68.9
Msa1409990 AT1G57870.1 28.509 228 104 11 39 228 154 360 3.20e-13 68.9
Msa1409990 AT1G57870.4 28.509 228 104 11 39 228 154 360 3.20e-13 68.9
Msa1409990 AT1G57870.2 28.509 228 104 11 39 228 154 360 3.20e-13 68.9
Msa1409990 AT3G05840.2 26.383 235 112 11 39 234 145 357 3.28e-13 68.6
Msa1409990 AT3G05840.1 26.383 235 112 11 39 234 145 357 3.28e-13 68.6
Msa1409990 AT2G01450.3 27.895 190 110 6 72 235 120 308 4.66e-13 68.6
Msa1409990 AT2G01450.1 27.895 190 110 6 72 235 120 308 4.66e-13 68.6
Msa1409990 AT2G01450.2 27.895 190 110 6 72 235 120 308 4.66e-13 68.6
Msa1409990 AT2G01450.4 27.895 190 110 6 72 235 120 308 4.66e-13 68.6
Msa1409990 AT1G09840.3 28.070 228 105 11 39 228 155 361 4.81e-13 68.2
Msa1409990 AT1G09840.7 28.070 228 105 11 39 228 155 361 4.81e-13 68.2
Msa1409990 AT1G09840.10 28.070 228 105 11 39 228 155 361 4.81e-13 68.2
Msa1409990 AT1G09840.6 28.070 228 105 11 39 228 155 361 4.81e-13 68.2
Msa1409990 AT1G09840.4 28.070 228 105 11 39 228 155 361 4.81e-13 68.2
Msa1409990 AT1G09840.1 28.070 228 105 11 39 228 155 361 4.81e-13 68.2
Msa1409990 AT1G09840.9 28.070 228 105 11 39 228 155 361 4.81e-13 68.2
Msa1409990 AT1G09840.5 28.070 228 105 11 39 228 155 361 4.81e-13 68.2
Msa1409990 AT1G09840.8 28.070 228 105 11 39 228 155 361 4.81e-13 68.2
Msa1409990 AT1G09840.2 28.070 228 105 11 39 228 155 361 4.81e-13 68.2
Msa1409990 AT4G04740.4 35.366 164 74 9 85 235 184 328 5.19e-13 68.2
Msa1409990 AT4G04740.6 35.366 164 74 9 85 235 184 328 5.19e-13 68.2
Msa1409990 AT4G04740.5 35.366 164 74 9 85 235 184 328 5.19e-13 68.2
Msa1409990 AT4G04740.3 35.366 164 74 9 85 235 184 328 5.19e-13 68.2
Msa1409990 AT4G04740.1 35.366 164 74 9 85 235 184 328 5.19e-13 68.2
Msa1409990 AT4G04740.7 35.366 164 74 9 85 235 184 328 5.19e-13 68.2
Msa1409990 AT1G61950.1 30.857 175 88 7 75 235 203 358 5.27e-13 68.2
Msa1409990 AT4G04740.2 35.366 164 74 9 85 235 184 328 5.55e-13 68.2
Msa1409990 AT3G56760.1 28.571 203 107 9 49 238 213 390 6.47e-13 68.2
Msa1409990 AT2G41140.1 29.891 184 97 7 68 238 225 389 7.87e-13 67.8
Msa1409990 AT4G29810.1 32.386 176 86 9 75 234 172 330 1.85e-12 66.2
Msa1409990 AT3G61160.1 26.050 238 109 10 39 234 174 386 2.09e-12 66.2
Msa1409990 AT5G57630.3 38.298 94 40 3 69 149 22 110 2.23e-12 65.9
Msa1409990 AT4G29810.2 32.386 176 86 9 75 234 181 339 2.34e-12 66.2
Msa1409990 AT3G61160.4 26.050 238 109 10 39 234 174 386 2.52e-12 66.2
Msa1409990 AT5G57630.2 37.500 96 42 3 69 151 110 200 2.64e-12 65.9
Msa1409990 AT3G61160.2 26.050 238 109 10 39 234 181 393 2.67e-12 66.2
Msa1409990 AT5G57630.1 38.298 94 40 3 69 149 110 198 2.70e-12 65.9
Msa1409990 AT3G61160.5 26.638 229 101 10 39 225 174 377 3.19e-12 65.9
Msa1409990 AT4G21940.1 32.759 174 85 9 75 235 207 361 3.25e-12 65.9
Msa1409990 AT4G21940.3 32.759 174 85 9 75 235 207 361 3.30e-12 65.9
Msa1409990 AT2G41860.1 31.098 164 81 7 85 235 169 313 3.71e-12 65.9
Msa1409990 AT4G21940.2 32.759 174 85 9 75 235 207 361 3.73e-12 65.9
Msa1409990 AT2G41860.2 31.098 164 81 7 85 235 169 313 4.04e-12 65.9
Msa1409990 AT3G05050.3 38.710 93 38 3 72 149 240 328 5.64e-12 65.5
Msa1409990 AT3G05050.2 38.710 93 38 3 72 149 240 328 5.64e-12 65.5
Msa1409990 AT3G05050.1 38.710 93 38 3 72 149 240 328 5.64e-12 65.5
Msa1409990 AT3G57530.1 32.317 164 79 7 85 235 178 322 8.43e-12 64.7
Msa1409990 AT5G12480.2 31.928 166 75 8 85 234 80 223 8.73e-12 64.7
Msa1409990 AT2G46700.2 29.670 182 98 7 68 237 64 227 1.03e-11 64.3
Msa1409990 AT2G46700.3 29.670 182 98 7 68 237 64 227 1.03e-11 64.3
Msa1409990 AT5G12480.1 32.530 166 74 9 85 234 174 317 1.03e-11 64.3
Msa1409990 AT3G57530.2 32.317 164 79 7 85 235 178 322 1.11e-11 64.3
Msa1409990 AT2G46700.1 29.670 182 98 7 68 237 245 408 1.31e-11 64.3
Msa1409990 AT1G18150.3 30.256 195 97 9 72 234 208 395 2.70e-11 63.2
Msa1409990 AT1G18150.2 30.256 195 97 9 72 234 208 395 2.70e-11 63.2
Msa1409990 AT1G18150.1 30.256 195 97 9 72 234 208 395 2.70e-11 63.2
Msa1409990 AT1G09600.1 27.692 195 97 8 72 234 265 447 3.30e-11 63.2
Msa1409990 AT3G61160.3 33.333 126 62 6 39 149 174 292 3.90e-11 62.4
Msa1409990 AT3G61160.6 33.333 126 62 6 39 149 181 299 4.63e-11 62.4
Msa1409990 AT3G18040.2 39.785 93 40 4 72 149 39 130 5.69e-11 62.0
Msa1409990 AT3G18040.5 39.785 93 40 4 72 149 122 213 6.06e-11 62.0
Msa1409990 AT3G18040.1 39.785 93 40 4 72 149 127 218 6.26e-11 62.0
Msa1409990 AT3G18040.4 39.785 93 40 4 72 149 236 327 7.81e-11 62.0
Msa1409990 AT3G18040.3 39.785 93 40 4 72 149 236 327 8.08e-11 62.0
Msa1409990 AT4G29810.3 32.164 171 83 9 75 229 181 334 8.15e-11 61.6
Msa1409990 AT2G31500.1 28.488 172 87 7 79 235 175 325 8.88e-11 61.6

Find 51 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTGAAATCCTGCTATT+TGG 0.152353 tig0023613:+5189 None:intergenic
AGATATTGGCTGAAATATTT+TGG 0.170047 tig0023613:-5750 Msa1409990:intron
GAAATTATCTGACTTTAATT+TGG 0.188343 tig0023613:-6070 Msa1409990:intron
GCTTTCTGCACTTCAAAATA+TGG 0.247648 tig0023613:+6866 None:intergenic
TGCAGTTGATATCTGGTCTA+TGG 0.259046 tig0023613:-5823 Msa1409990:CDS
TTGGAACTCCATTCAATATC+TGG 0.265843 tig0023613:+6789 None:intergenic
ACTGAAGCCAGAATATTATT+AGG 0.269823 tig0023613:+6117 None:intergenic
ATCAACTGCAGTTGAGTAAT+TGG 0.289792 tig0023613:+5836 None:intergenic
CAGCTGAAATCCTGCTATTT+GGG 0.318029 tig0023613:+5190 None:intergenic
TCTGAAACCTAATAATATTC+TGG 0.322462 tig0023613:-6124 Msa1409990:CDS
ATGAATACCTTTGGCATGAT+TGG 0.339803 tig0023613:+5552 None:intergenic
CAGAAAGCTTTCTACGAATC+AGG 0.346241 tig0023613:-6851 Msa1409990:CDS
TAAAGATGAACCGCAGATAT+TGG 0.377267 tig0023613:-5764 Msa1409990:CDS
ACTCAACTGCAGTTGATATC+TGG 0.396574 tig0023613:-5830 Msa1409990:CDS
AGGCTCCAACCTCTGTTCAT+TGG 0.404026 tig0023613:-5787 Msa1409990:CDS
TTGAATGGGAAGAATCTTGA+TGG 0.417517 tig0023613:+6817 None:intergenic
TTTCTGCGTCAAGCTCTCTC+TGG 0.447075 tig0023613:-6186 Msa1409990:CDS
GTAGAACCCATCAAAAGTTC+AGG 0.451436 tig0023613:+5858 None:intergenic
GCGTCAAGCTCTCTCTGGAT+TGG 0.453841 tig0023613:-6181 Msa1409990:CDS
AGACCATCTGCTTCGAGCCT+AGG 0.456387 tig0023613:+5432 None:intergenic
GTTAATCAACATTCAAGATC+GGG 0.456876 tig0023613:-6511 Msa1409990:CDS
GACCATCTGCTTCGAGCCTA+GGG 0.470227 tig0023613:+5433 None:intergenic
CAAGAAAACCAGATATTGAA+TGG 0.476194 tig0023613:-6797 Msa1409990:CDS
TTTGCCTGTGCCCAAATAGC+AGG 0.491915 tig0023613:-5200 Msa1409990:CDS
CTTTACCAATGAACAGAGGT+TGG 0.498726 tig0023613:+5782 None:intergenic
ATCATGGGTGGTCAAGTTGA+AGG 0.501757 tig0023613:+5145 None:intergenic
AGTTCAGGTGCTTTATAGCA+AGG 0.509440 tig0023613:+5873 None:intergenic
TCTATGGGATGCATATGCTT+AGG 0.515456 tig0023613:-5807 Msa1409990:CDS
ACCAGATGAAGGACAAAGGT+TGG 0.520281 tig0023613:-6890 Msa1409990:intron
TGTTAATCAACATTCAAGAT+CGG 0.527350 tig0023613:-6512 Msa1409990:CDS
CCAGATGAAGGACAAAGGTT+GGG 0.529638 tig0023613:-6889 Msa1409990:intron
GCAGTTGATATCTGGTCTAT+GGG 0.534989 tig0023613:-5822 Msa1409990:CDS
ATACGATTCAAAATGCTGCT+TGG 0.536667 tig0023613:+6770 None:intergenic
AAATCCTGCTATTTGGGCAC+AGG 0.541827 tig0023613:+5196 None:intergenic
TATAGAAGACACACCAGGCC+AGG 0.545839 tig0023613:+5602 None:intergenic
CTCTCTCTCAATGGAAACAG+AGG 0.548263 tig0023613:-7171 None:intergenic
GCCTAGGGAATTCTGCTGCT+AGG 0.593322 tig0023613:+5448 None:intergenic
ATACCTTTGGCATGATTGGA+TGG 0.594825 tig0023613:+5556 None:intergenic
TAACATCTCATCACGGCGCG+AGG 0.598048 tig0023613:+6530 None:intergenic
CAATACCAGATGAAGGACAA+AGG 0.598590 tig0023613:-6894 Msa1409990:intron
GCACGCCAACAGAAGAAACC+TGG 0.600125 tig0023613:-5620 Msa1409990:intron
TTCCCTAGGCTCGAAGCAGA+TGG 0.601568 tig0023613:-5435 Msa1409990:CDS
ACCTAGCAGCAGAATTCCCT+AGG 0.606461 tig0023613:-5449 Msa1409990:CDS
CCAACAGAAGAAACCTGGCC+TGG 0.607357 tig0023613:-5615 Msa1409990:intron
CGACCATCCAATCATGCCAA+AGG 0.634935 tig0023613:-5559 Msa1409990:intron
AATATTTCAGCCAATATCTG+CGG 0.646500 tig0023613:+5754 None:intergenic
ATGGAAACAGAGGAAGAACA+AGG 0.659811 tig0023613:-7161 Msa1409990:CDS
GCTTGATCAATCATCATGGG+TGG 0.672640 tig0023613:+5133 None:intergenic
TCATCTTTACCAATGAACAG+AGG 0.680053 tig0023613:+5778 None:intergenic
TTGCATATAGAAGACACACC+AGG 0.683383 tig0023613:+5597 None:intergenic
TGTTGATTAACATCTCATCA+CGG 0.696386 tig0023613:+6523 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAATATATATTAAAT+AGG - tig0023613:6037-6056 Msa1409990:intron 0.0%
!! TAATTAATATATATTAAATA+GGG - tig0023613:6038-6057 Msa1409990:intron 0.0%
!! ATAATTAATATATATTAAAT+AGG - tig0023613:6037-6056 Msa1409990:intron 0.0%
!! TAATTAATATATATTAAATA+GGG - tig0023613:6038-6057 Msa1409990:intron 0.0%
!!! TTTTAGTTTTATTTCAAAGA+AGG + tig0023613:6338-6357 None:intergenic 15.0%
!! CACAAAATAATTAAATCAAT+TGG - tig0023613:6638-6657 Msa1409990:intron 15.0%
!!! TTTTAGTTTTATTTCAAAGA+AGG + tig0023613:6338-6357 None:intergenic 15.0%
!! CACAAAATAATTAAATCAAT+TGG - tig0023613:6638-6657 Msa1409990:intron 15.0%
!! AAAATTTATAGTGCAAGAAA+AGG - tig0023613:5947-5966 Msa1409990:intron 20.0%
!! ATCAAAAGTGAAAATCAAAA+TGG + tig0023613:6008-6027 None:intergenic 20.0%
!! GAAATTATCTGACTTTAATT+TGG - tig0023613:6237-6256 Msa1409990:intron 20.0%
!! TCAAAGCTAATTAAGATATT+GGG + tig0023613:6367-6386 None:intergenic 20.0%
!! TTCAAAGCTAATTAAGATAT+TGG + tig0023613:6368-6387 None:intergenic 20.0%
!!! TTTATTTTCAACTTTCAGAT+GGG - tig0023613:6407-6426 Msa1409990:intron 20.0%
!! TCAAACAAATAGTATAGTTA+TGG + tig0023613:6599-6618 None:intergenic 20.0%
!! CCTAAATTTATAAAAGGAAA+TGG + tig0023613:6807-6826 None:intergenic 20.0%
!!! CCATTTCCTTTTATAAATTT+AGG - tig0023613:6804-6823 Msa1409990:CDS 20.0%
!!! TAAACTATATTGGATTTTGT+AGG - tig0023613:6835-6854 Msa1409990:CDS 20.0%
!! ATCTACTGAATGTTTATTAA+TGG - tig0023613:7056-7075 Msa1409990:intron 20.0%
!! AAAATTTATAGTGCAAGAAA+AGG - tig0023613:5947-5966 Msa1409990:intron 20.0%
!! ATCAAAAGTGAAAATCAAAA+TGG + tig0023613:6008-6027 None:intergenic 20.0%
!! GAAATTATCTGACTTTAATT+TGG - tig0023613:6237-6256 Msa1409990:intron 20.0%
!! TCAAAGCTAATTAAGATATT+GGG + tig0023613:6367-6386 None:intergenic 20.0%
!! TTCAAAGCTAATTAAGATAT+TGG + tig0023613:6368-6387 None:intergenic 20.0%
!!! TTTATTTTCAACTTTCAGAT+GGG - tig0023613:6407-6426 Msa1409990:intron 20.0%
!! TCAAACAAATAGTATAGTTA+TGG + tig0023613:6599-6618 None:intergenic 20.0%
!! CCTAAATTTATAAAAGGAAA+TGG + tig0023613:6807-6826 None:intergenic 20.0%
!!! CCATTTCCTTTTATAAATTT+AGG - tig0023613:6804-6823 Msa1409990:CDS 20.0%
!!! TAAACTATATTGGATTTTGT+AGG - tig0023613:6835-6854 Msa1409990:CDS 20.0%
!! ATCTACTGAATGTTTATTAA+TGG - tig0023613:7056-7075 Msa1409990:intron 20.0%
!!! AATATCTGGTTTTCTTGAAT+GGG + tig0023613:5507-5526 None:intergenic 25.0%
! AAGATTGACCTAACAATATT+GGG + tig0023613:5592-5611 None:intergenic 25.0%
! AAAGATTGACCTAACAATAT+TGG + tig0023613:5593-5612 None:intergenic 25.0%
! GAGATGAAATTAAAGAATGA+AGG + tig0023613:5618-5637 None:intergenic 25.0%
! TGTTAATCAACATTCAAGAT+CGG - tig0023613:5795-5814 Msa1409990:CDS 25.0%
!!! TATCTTTGTTTTCAACATGA+TGG - tig0023613:5882-5901 Msa1409990:CDS 25.0%
!! TCTGAAACCTAATAATATTC+TGG - tig0023613:6183-6202 Msa1409990:CDS 25.0%
! TGTCATACATTAATAGAGTA+GGG + tig0023613:6294-6313 None:intergenic 25.0%
!!! GTTTATTTTCAACTTTCAGA+TGG - tig0023613:6406-6425 Msa1409990:intron 25.0%
!!! AGATATTGGCTGAAATATTT+TGG - tig0023613:6557-6576 Msa1409990:intron 25.0%
!!! TTTTATATGTAAAGCTTGCT+TGG - tig0023613:6665-6684 Msa1409990:intron 25.0%
! ATCCAATATAGTTTATTGTC+TGG + tig0023613:6830-6849 None:intergenic 25.0%
!!! AATATCTGGTTTTCTTGAAT+GGG + tig0023613:5507-5526 None:intergenic 25.0%
! AAGATTGACCTAACAATATT+GGG + tig0023613:5592-5611 None:intergenic 25.0%
! AAAGATTGACCTAACAATAT+TGG + tig0023613:5593-5612 None:intergenic 25.0%
! GAGATGAAATTAAAGAATGA+AGG + tig0023613:5618-5637 None:intergenic 25.0%
! TGTTAATCAACATTCAAGAT+CGG - tig0023613:5795-5814 Msa1409990:CDS 25.0%
!!! TATCTTTGTTTTCAACATGA+TGG - tig0023613:5882-5901 Msa1409990:CDS 25.0%
!! TCTGAAACCTAATAATATTC+TGG - tig0023613:6183-6202 Msa1409990:CDS 25.0%
! TGTCATACATTAATAGAGTA+GGG + tig0023613:6294-6313 None:intergenic 25.0%
!!! GTTTATTTTCAACTTTCAGA+TGG - tig0023613:6406-6425 Msa1409990:intron 25.0%
!!! AGATATTGGCTGAAATATTT+TGG - tig0023613:6557-6576 Msa1409990:intron 25.0%
!!! TTTTATATGTAAAGCTTGCT+TGG - tig0023613:6665-6684 Msa1409990:intron 25.0%
! ATCCAATATAGTTTATTGTC+TGG + tig0023613:6830-6849 None:intergenic 25.0%
TGATGCTGAGTAATGAAATT+TGG + tig0023613:5194-5213 None:intergenic 30.0%
AATTGAAACTCTACAGTTTC+TGG + tig0023613:5220-5239 None:intergenic 30.0%
AGATCTTGCTTGAACAAAAA+AGG + tig0023613:5255-5274 None:intergenic 30.0%
! CTTCATCTGGTATTGAAAAT+GGG + tig0023613:5408-5427 None:intergenic 30.0%
!!! CAATATCTGGTTTTCTTGAA+TGG + tig0023613:5508-5527 None:intergenic 30.0%
CAAGAAAACCAGATATTGAA+TGG - tig0023613:5510-5529 Msa1409990:intron 30.0%
CATTCATATACATCACGTTA+GGG + tig0023613:5661-5680 None:intergenic 30.0%
ACATTCATATACATCACGTT+AGG + tig0023613:5662-5681 None:intergenic 30.0%
! TGTTGATTAACATCTCATCA+CGG + tig0023613:5787-5806 None:intergenic 30.0%
GTTAATCAACATTCAAGATC+GGG - tig0023613:5796-5815 Msa1409990:CDS 30.0%
! TGTGTAGAATTTTGTGAGTA+TGG + tig0023613:6159-6178 None:intergenic 30.0%
ACTGAAGCCAGAATATTATT+AGG + tig0023613:6193-6212 None:intergenic 30.0%
!! TATCTGACTTTAATTTGGTG+CGG - tig0023613:6242-6261 Msa1409990:intron 30.0%
GTGTCATACATTAATAGAGT+AGG + tig0023613:6295-6314 None:intergenic 30.0%
AATATTTCAGCCAATATCTG+CGG + tig0023613:6556-6575 None:intergenic 30.0%
AAGTAGAACATGAATACCTT+TGG + tig0023613:6767-6786 None:intergenic 30.0%
GTCTGGCCTAAATTTATAAA+AGG + tig0023613:6813-6832 None:intergenic 30.0%
TCTTCTTTCAGTAAGTTAAC+TGG - tig0023613:6901-6920 Msa1409990:intron 30.0%
TGATGCTGAGTAATGAAATT+TGG + tig0023613:5194-5213 None:intergenic 30.0%
AATTGAAACTCTACAGTTTC+TGG + tig0023613:5220-5239 None:intergenic 30.0%
AGATCTTGCTTGAACAAAAA+AGG + tig0023613:5255-5274 None:intergenic 30.0%
! CTTCATCTGGTATTGAAAAT+GGG + tig0023613:5408-5427 None:intergenic 30.0%
!!! CAATATCTGGTTTTCTTGAA+TGG + tig0023613:5508-5527 None:intergenic 30.0%
CAAGAAAACCAGATATTGAA+TGG - tig0023613:5510-5529 Msa1409990:intron 30.0%
CATTCATATACATCACGTTA+GGG + tig0023613:5661-5680 None:intergenic 30.0%
ACATTCATATACATCACGTT+AGG + tig0023613:5662-5681 None:intergenic 30.0%
! TGTTGATTAACATCTCATCA+CGG + tig0023613:5787-5806 None:intergenic 30.0%
GTTAATCAACATTCAAGATC+GGG - tig0023613:5796-5815 Msa1409990:CDS 30.0%
! TGTGTAGAATTTTGTGAGTA+TGG + tig0023613:6159-6178 None:intergenic 30.0%
ACTGAAGCCAGAATATTATT+AGG + tig0023613:6193-6212 None:intergenic 30.0%
!! TATCTGACTTTAATTTGGTG+CGG - tig0023613:6242-6261 Msa1409990:intron 30.0%
GTGTCATACATTAATAGAGT+AGG + tig0023613:6295-6314 None:intergenic 30.0%
AATATTTCAGCCAATATCTG+CGG + tig0023613:6556-6575 None:intergenic 30.0%
AAGTAGAACATGAATACCTT+TGG + tig0023613:6767-6786 None:intergenic 30.0%
GTCTGGCCTAAATTTATAAA+AGG + tig0023613:6813-6832 None:intergenic 30.0%
TCTTCTTTCAGTAAGTTAAC+TGG - tig0023613:6901-6920 Msa1409990:intron 30.0%
! CCTTCATCTGGTATTGAAAA+TGG + tig0023613:5409-5428 None:intergenic 35.0%
! CCATTTTCAATACCAGATGA+AGG - tig0023613:5406-5425 Msa1409990:intron 35.0%
GCTTTCTGCACTTCAAAATA+TGG + tig0023613:5444-5463 None:intergenic 35.0%
TTGAATGGGAAGAATCTTGA+TGG + tig0023613:5493-5512 None:intergenic 35.0%
TTGGAACTCCATTCAATATC+TGG + tig0023613:5521-5540 None:intergenic 35.0%
ATACGATTCAAAATGCTGCT+TGG + tig0023613:5540-5559 None:intergenic 35.0%
TTAATAGAGTAGGGTGAAAG+AGG + tig0023613:6285-6304 None:intergenic 35.0%
!! TAAAGCACCTGAACTTTTGA+TGG - tig0023613:6442-6461 Msa1409990:intron 35.0%
!! AAAGCACCTGAACTTTTGAT+GGG - tig0023613:6443-6462 Msa1409990:intron 35.0%
ATCAACTGCAGTTGAGTAAT+TGG + tig0023613:6474-6493 None:intergenic 35.0%
TCATCTTTACCAATGAACAG+AGG + tig0023613:6532-6551 None:intergenic 35.0%
TAAAGATGAACCGCAGATAT+TGG - tig0023613:6543-6562 Msa1409990:CDS 35.0%
ATGAATACCTTTGGCATGAT+TGG + tig0023613:6758-6777 None:intergenic 35.0%
GGCCAGACAATAAACTATAT+TGG - tig0023613:6825-6844 Msa1409990:CDS 35.0%
! CCTTCATCTGGTATTGAAAA+TGG + tig0023613:5409-5428 None:intergenic 35.0%
! CCATTTTCAATACCAGATGA+AGG - tig0023613:5406-5425 Msa1409990:intron 35.0%
GCTTTCTGCACTTCAAAATA+TGG + tig0023613:5444-5463 None:intergenic 35.0%
TTGAATGGGAAGAATCTTGA+TGG + tig0023613:5493-5512 None:intergenic 35.0%
TTGGAACTCCATTCAATATC+TGG + tig0023613:5521-5540 None:intergenic 35.0%
ATACGATTCAAAATGCTGCT+TGG + tig0023613:5540-5559 None:intergenic 35.0%
TTAATAGAGTAGGGTGAAAG+AGG + tig0023613:6285-6304 None:intergenic 35.0%
!! TAAAGCACCTGAACTTTTGA+TGG - tig0023613:6442-6461 Msa1409990:intron 35.0%
!! AAAGCACCTGAACTTTTGAT+GGG - tig0023613:6443-6462 Msa1409990:intron 35.0%
ATCAACTGCAGTTGAGTAAT+TGG + tig0023613:6474-6493 None:intergenic 35.0%
TCATCTTTACCAATGAACAG+AGG + tig0023613:6532-6551 None:intergenic 35.0%
TAAAGATGAACCGCAGATAT+TGG - tig0023613:6543-6562 Msa1409990:CDS 35.0%
ATGAATACCTTTGGCATGAT+TGG + tig0023613:6758-6777 None:intergenic 35.0%
GGCCAGACAATAAACTATAT+TGG - tig0023613:6825-6844 Msa1409990:CDS 35.0%
ATGGAAACAGAGGAAGAACA+AGG - tig0023613:5146-5165 Msa1409990:CDS 40.0%
CAATACCAGATGAAGGACAA+AGG - tig0023613:5413-5432 Msa1409990:intron 40.0%
CAGAAAGCTTTCTACGAATC+AGG - tig0023613:5456-5475 Msa1409990:intron 40.0%
CCTAACAATATTGGGATGCA+TGG + tig0023613:5584-5603 None:intergenic 40.0%
CCATGCATCCCAATATTGTT+AGG - tig0023613:5581-5600 Msa1409990:CDS 40.0%
ATACAGATTGCAGACAGTGA+TGG - tig0023613:5696-5715 Msa1409990:intron 40.0%
GGGTATATTAGATGCAAGCA+AGG - tig0023613:6058-6077 Msa1409990:intron 40.0%
GAAAAATCTGCAAGGACAAG+AGG + tig0023613:6105-6124 None:intergenic 40.0%
TTGACGCAGAAAAATCTGCA+AGG + tig0023613:6113-6132 None:intergenic 40.0%
AGTTCAGGTGCTTTATAGCA+AGG + tig0023613:6437-6456 None:intergenic 40.0%
GTAGAACCCATCAAAAGTTC+AGG + tig0023613:6452-6471 None:intergenic 40.0%
! ACTCAACTGCAGTTGATATC+TGG - tig0023613:6477-6496 Msa1409990:intron 40.0%
! TGCAGTTGATATCTGGTCTA+TGG - tig0023613:6484-6503 Msa1409990:intron 40.0%
! GCAGTTGATATCTGGTCTAT+GGG - tig0023613:6485-6504 Msa1409990:intron 40.0%
TCTATGGGATGCATATGCTT+AGG - tig0023613:6500-6519 Msa1409990:intron 40.0%
CTTTACCAATGAACAGAGGT+TGG + tig0023613:6528-6547 None:intergenic 40.0%
TTGCATATAGAAGACACACC+AGG + tig0023613:6713-6732 None:intergenic 40.0%
ATACCTTTGGCATGATTGGA+TGG + tig0023613:6754-6773 None:intergenic 40.0%
! TAATGGCCAGTGTTTTGCAT+TGG - tig0023613:7073-7092 Msa1409990:intron 40.0%
TTCTGTCCAATGCAAAACAC+TGG + tig0023613:7082-7101 None:intergenic 40.0%
! CAGCTGAAATCCTGCTATTT+GGG + tig0023613:7120-7139 None:intergenic 40.0%
TCAGCTGAAATCCTGCTATT+TGG + tig0023613:7121-7140 None:intergenic 40.0%
ATGGAAACAGAGGAAGAACA+AGG - tig0023613:5146-5165 Msa1409990:CDS 40.0%
CAATACCAGATGAAGGACAA+AGG - tig0023613:5413-5432 Msa1409990:intron 40.0%
CAGAAAGCTTTCTACGAATC+AGG - tig0023613:5456-5475 Msa1409990:intron 40.0%
CCTAACAATATTGGGATGCA+TGG + tig0023613:5584-5603 None:intergenic 40.0%
CCATGCATCCCAATATTGTT+AGG - tig0023613:5581-5600 Msa1409990:CDS 40.0%
ATACAGATTGCAGACAGTGA+TGG - tig0023613:5696-5715 Msa1409990:intron 40.0%
GGGTATATTAGATGCAAGCA+AGG - tig0023613:6058-6077 Msa1409990:intron 40.0%
GAAAAATCTGCAAGGACAAG+AGG + tig0023613:6105-6124 None:intergenic 40.0%
TTGACGCAGAAAAATCTGCA+AGG + tig0023613:6113-6132 None:intergenic 40.0%
AGTTCAGGTGCTTTATAGCA+AGG + tig0023613:6437-6456 None:intergenic 40.0%
GTAGAACCCATCAAAAGTTC+AGG + tig0023613:6452-6471 None:intergenic 40.0%
! ACTCAACTGCAGTTGATATC+TGG - tig0023613:6477-6496 Msa1409990:intron 40.0%
! TGCAGTTGATATCTGGTCTA+TGG - tig0023613:6484-6503 Msa1409990:intron 40.0%
! GCAGTTGATATCTGGTCTAT+GGG - tig0023613:6485-6504 Msa1409990:intron 40.0%
TCTATGGGATGCATATGCTT+AGG - tig0023613:6500-6519 Msa1409990:intron 40.0%
CTTTACCAATGAACAGAGGT+TGG + tig0023613:6528-6547 None:intergenic 40.0%
TTGCATATAGAAGACACACC+AGG + tig0023613:6713-6732 None:intergenic 40.0%
ATACCTTTGGCATGATTGGA+TGG + tig0023613:6754-6773 None:intergenic 40.0%
! TAATGGCCAGTGTTTTGCAT+TGG - tig0023613:7073-7092 Msa1409990:intron 40.0%
TTCTGTCCAATGCAAAACAC+TGG + tig0023613:7082-7101 None:intergenic 40.0%
! CAGCTGAAATCCTGCTATTT+GGG + tig0023613:7120-7139 None:intergenic 40.0%
TCAGCTGAAATCCTGCTATT+TGG + tig0023613:7121-7140 None:intergenic 40.0%
ACCAGATGAAGGACAAAGGT+TGG - tig0023613:5417-5436 Msa1409990:intron 45.0%
CCAGATGAAGGACAAAGGTT+GGG - tig0023613:5418-5437 Msa1409990:intron 45.0%
CTGCAAGGACAAGAGGAAAA+TGG + tig0023613:6098-6117 None:intergenic 45.0%
ATAGAGTAGGGTGAAAGAGG+AGG + tig0023613:6282-6301 None:intergenic 45.0%
! AAATCCTGCTATTTGGGCAC+AGG + tig0023613:7114-7133 None:intergenic 45.0%
ACCAGATGAAGGACAAAGGT+TGG - tig0023613:5417-5436 Msa1409990:intron 45.0%
CCAGATGAAGGACAAAGGTT+GGG - tig0023613:5418-5437 Msa1409990:intron 45.0%
CTGCAAGGACAAGAGGAAAA+TGG + tig0023613:6098-6117 None:intergenic 45.0%
ATAGAGTAGGGTGAAAGAGG+AGG + tig0023613:6282-6301 None:intergenic 45.0%
! AAATCCTGCTATTTGGGCAC+AGG + tig0023613:7114-7133 None:intergenic 45.0%
CCCAACCTTTGTCCTTCATC+TGG + tig0023613:5421-5440 None:intergenic 50.0%
! GCAGACAGTGATGGAAACTG+AGG - tig0023613:5705-5724 Msa1409990:intron 50.0%
TTTCTGCGTCAAGCTCTCTC+TGG - tig0023613:6121-6140 Msa1409990:CDS 50.0%
AGGCTCCAACCTCTGTTCAT+TGG - tig0023613:6520-6539 Msa1409990:CDS 50.0%
TATAGAAGACACACCAGGCC+AGG + tig0023613:6708-6727 None:intergenic 50.0%
CGACCATCCAATCATGCCAA+AGG - tig0023613:6748-6767 Msa1409990:intron 50.0%
ACCTAGCAGCAGAATTCCCT+AGG - tig0023613:6858-6877 Msa1409990:CDS 50.0%
TTTGCCTGTGCCCAAATAGC+AGG - tig0023613:7107-7126 Msa1409990:intron 50.0%
CCCAACCTTTGTCCTTCATC+TGG + tig0023613:5421-5440 None:intergenic 50.0%
! GCAGACAGTGATGGAAACTG+AGG - tig0023613:5705-5724 Msa1409990:intron 50.0%
TTTCTGCGTCAAGCTCTCTC+TGG - tig0023613:6121-6140 Msa1409990:CDS 50.0%
AGGCTCCAACCTCTGTTCAT+TGG - tig0023613:6520-6539 Msa1409990:CDS 50.0%
TATAGAAGACACACCAGGCC+AGG + tig0023613:6708-6727 None:intergenic 50.0%
CGACCATCCAATCATGCCAA+AGG - tig0023613:6748-6767 Msa1409990:intron 50.0%
ACCTAGCAGCAGAATTCCCT+AGG - tig0023613:6858-6877 Msa1409990:CDS 50.0%
TTTGCCTGTGCCCAAATAGC+AGG - tig0023613:7107-7126 Msa1409990:intron 50.0%
TAACATCTCATCACGGCGCG+AGG + tig0023613:5780-5799 None:intergenic 55.0%
GCGTCAAGCTCTCTCTGGAT+TGG - tig0023613:6126-6145 Msa1409990:CDS 55.0%
GCACGCCAACAGAAGAAACC+TGG - tig0023613:6687-6706 Msa1409990:intron 55.0%
CCAGGCCAGGTTTCTTCTGT+TGG + tig0023613:6695-6714 None:intergenic 55.0%
CCAACAGAAGAAACCTGGCC+TGG - tig0023613:6692-6711 Msa1409990:intron 55.0%
GCCTAGGGAATTCTGCTGCT+AGG + tig0023613:6862-6881 None:intergenic 55.0%
TTCCCTAGGCTCGAAGCAGA+TGG - tig0023613:6872-6891 Msa1409990:CDS 55.0%
GACCATCTGCTTCGAGCCTA+GGG + tig0023613:6877-6896 None:intergenic 55.0%
AGACCATCTGCTTCGAGCCT+AGG + tig0023613:6878-6897 None:intergenic 55.0%
TAACATCTCATCACGGCGCG+AGG + tig0023613:5780-5799 None:intergenic 55.0%
GCGTCAAGCTCTCTCTGGAT+TGG - tig0023613:6126-6145 Msa1409990:CDS 55.0%
GCACGCCAACAGAAGAAACC+TGG - tig0023613:6687-6706 Msa1409990:intron 55.0%
CCAGGCCAGGTTTCTTCTGT+TGG + tig0023613:6695-6714 None:intergenic 55.0%
CCAACAGAAGAAACCTGGCC+TGG - tig0023613:6692-6711 Msa1409990:intron 55.0%
GCCTAGGGAATTCTGCTGCT+AGG + tig0023613:6862-6881 None:intergenic 55.0%
TTCCCTAGGCTCGAAGCAGA+TGG - tig0023613:6872-6891 Msa1409990:CDS 55.0%
GACCATCTGCTTCGAGCCTA+GGG + tig0023613:6877-6896 None:intergenic 55.0%
AGACCATCTGCTTCGAGCCT+AGG + tig0023613:6878-6897 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0023613 gene 5146 7183 5146 ID=Msa1409990;Name=Msa1409990
tig0023613 mRNA 5146 7183 5146 ID=Msa1409990-mRNA-1;Parent=Msa1409990;Name=Msa1409990-mRNA-1;_AED=0.35;_eAED=0.49;_QI=0|0|0|0.75|1|1|8|0|239
tig0023613 exon 7158 7183 7158 ID=Msa1409990-mRNA-1:exon:26376;Parent=Msa1409990-mRNA-1
tig0023613 exon 6774 6901 6774 ID=Msa1409990-mRNA-1:exon:26375;Parent=Msa1409990-mRNA-1
tig0023613 exon 6506 6567 6506 ID=Msa1409990-mRNA-1:exon:26374;Parent=Msa1409990-mRNA-1
tig0023613 exon 6071 6211 6071 ID=Msa1409990-mRNA-1:exon:26373;Parent=Msa1409990-mRNA-1
tig0023613 exon 5751 5904 5751 ID=Msa1409990-mRNA-1:exon:26372;Parent=Msa1409990-mRNA-1
tig0023613 exon 5560 5630 5560 ID=Msa1409990-mRNA-1:exon:26371;Parent=Msa1409990-mRNA-1
tig0023613 exon 5419 5472 5419 ID=Msa1409990-mRNA-1:exon:26370;Parent=Msa1409990-mRNA-1
tig0023613 exon 5146 5229 5146 ID=Msa1409990-mRNA-1:exon:26369;Parent=Msa1409990-mRNA-1
tig0023613 CDS 7158 7183 7158 ID=Msa1409990-mRNA-1:cds;Parent=Msa1409990-mRNA-1
tig0023613 CDS 6774 6901 6774 ID=Msa1409990-mRNA-1:cds;Parent=Msa1409990-mRNA-1
tig0023613 CDS 6506 6567 6506 ID=Msa1409990-mRNA-1:cds;Parent=Msa1409990-mRNA-1
tig0023613 CDS 6071 6211 6071 ID=Msa1409990-mRNA-1:cds;Parent=Msa1409990-mRNA-1
tig0023613 CDS 5751 5904 5751 ID=Msa1409990-mRNA-1:cds;Parent=Msa1409990-mRNA-1
tig0023613 CDS 5560 5630 5560 ID=Msa1409990-mRNA-1:cds;Parent=Msa1409990-mRNA-1
tig0023613 CDS 5419 5472 5419 ID=Msa1409990-mRNA-1:cds;Parent=Msa1409990-mRNA-1
tig0023613 CDS 5146 5229 5146 ID=Msa1409990-mRNA-1:cds;Parent=Msa1409990-mRNA-1
Gene Sequence

>Msa1409990

ATGGAAACAGAGGAAGAACAAGGAATGACAAAGGTTGGGCCATATTTTGAAGTGCAGAAAGCTTTCTACGAATCAGGTTGTATTGTAGCCATCAAGATTCTTCCCATTCAAGAAAACCAGATATTGAATGGAGTTCCAAGCAGCATTTTGAATCTAGTATTAGAAAATACCTCGCGCCGTGATGAGATGTTAATCAACATTCAAGATCGGGAAAAAATTTTTCTGCGTCAAGCTCTCTCTGGATTGGCTTACTGCCATACTCACAAAATTCTACACAGAGATCTGAAACCTAATAATATTCTGGCTTCAGTTGAAGAATTACTTGTCAATGAAGTGAAATTATCTGACTTTAATTTGATGGGTAATCCTTGCTATAAAGCACCTGAACTTTTGATGGGTTCTACCAATTACTCAACTGCAGTTGATATCTGGTCTATGGGATGCATATGCTTAGGCTCCAACCTCTGTTCATTGGTAAAGATGAACCGCAGATATTGGCTGAAATATTTTGAAGAAACCTGGCCTGGTGTGTCTTCTATATGCAACTTTATTGAAGCACTCGACCATCCAATCATGCCAAAGGACCTAGCAGCAGAATTCCCTAGGCTCGAAGCAGATGGTCTTGATCTTCTTTCAAAAATGCTTTGCCTGTGCCCAAATAGCAGGATTTCAGCTGATCAAGCACTCGAGCAATCATACCTTCAACTTGACCACCCATGA
Protein sequence

>Msa1409990

METEEEQGMTKVGPYFEVQKAFYESGCIVAIKILPIQENQILNGVPSSILNLVLENTSRRDEMLINIQDREKIFLRQALSGLAYCHTHKILHRDLKPNNILASVEELLVNEVKLSDFNLMGNPCYKAPELLMGSTNYSTAVDIWSMGCICLGSNLCSLVKMNRRYWLKYFEETWPGVSSICNFIEALDHPIMPKDLAAEFPRLEADGLDLLSKMLCLCPNSRISADQALEQSYLQLDHP*