Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1410050 | sp|Q1G3Q4|RITF1_ARATH | 38.060 | 134 | 72 | 5 | 9 | 142 | 8 | 130 | 7.08e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1410050 | A0A072VBE7 | 66.397 | 247 | 72 | 2 | 5 | 245 | 1 | 242 | 7.40e-106 | 315 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1410050 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1410050 | MtrunA17_Chr2g0320561 | 68.548 | 248 | 67 | 2 | 4 | 245 | 1 | 243 | 1.20e-107 | 310 |
| Msa1410050 | MtrunA17_Chr4g0020811 | 94.483 | 145 | 8 | 0 | 2 | 146 | 1 | 145 | 1.58e-102 | 294 |
| Msa1410050 | MtrunA17_Chr2g0308401 | 94.406 | 143 | 8 | 0 | 4 | 146 | 1 | 143 | 9.39e-101 | 290 |
| Msa1410050 | MtrunA17_Chr2g0320521 | 64.000 | 250 | 66 | 4 | 2 | 245 | 1 | 232 | 1.16e-98 | 287 |
| Msa1410050 | MtrunA17_Chr2g0320551 | 72.000 | 150 | 37 | 1 | 4 | 148 | 1 | 150 | 1.13e-74 | 224 |
| Msa1410050 | MtrunA17_Chr1g0179781 | 39.754 | 244 | 103 | 7 | 2 | 244 | 1 | 201 | 1.43e-46 | 154 |
| Msa1410050 | MtrunA17_Chr5g0395181 | 37.131 | 237 | 98 | 6 | 8 | 244 | 22 | 207 | 5.49e-43 | 145 |
| Msa1410050 | MtrunA17_Chr5g0411151 | 35.366 | 246 | 109 | 6 | 3 | 244 | 31 | 230 | 6.16e-43 | 145 |
| Msa1410050 | MtrunA17_Chr7g0265291 | 37.805 | 246 | 107 | 8 | 1 | 244 | 1 | 202 | 5.20e-42 | 142 |
| Msa1410050 | MtrunA17_Chr4g0040071 | 34.874 | 238 | 109 | 6 | 8 | 244 | 16 | 208 | 4.53e-41 | 140 |
| Msa1410050 | MtrunA17_Chr8g0366581 | 48.551 | 138 | 61 | 3 | 8 | 145 | 34 | 161 | 1.12e-39 | 137 |
| Msa1410050 | MtrunA17_Chr2g0297251 | 32.917 | 240 | 136 | 9 | 9 | 244 | 39 | 257 | 1.79e-27 | 105 |
| Msa1410050 | MtrunA17_Chr7g0230511 | 30.385 | 260 | 140 | 12 | 6 | 244 | 7 | 246 | 8.45e-23 | 93.2 |
| Msa1410050 | MtrunA17_Chr4g0065041 | 27.668 | 253 | 155 | 8 | 9 | 244 | 10 | 251 | 2.24e-19 | 84.3 |
| Msa1410050 | MtrunA17_Chr4g0052451 | 38.554 | 83 | 49 | 1 | 60 | 142 | 10 | 90 | 1.28e-12 | 62.0 |
| Msa1410050 | MtrunA17_Chr8g0392151 | 30.201 | 149 | 87 | 5 | 9 | 144 | 15 | 159 | 3.45e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1410050 | AT1G43000.2 | 39.669 | 242 | 116 | 6 | 3 | 244 | 12 | 223 | 7.69e-50 | 163 |
| Msa1410050 | AT1G43000.1 | 39.669 | 242 | 116 | 6 | 3 | 244 | 5 | 216 | 1.10e-49 | 162 |
| Msa1410050 | AT1G21000.1 | 38.492 | 252 | 128 | 9 | 3 | 244 | 12 | 246 | 1.42e-44 | 150 |
| Msa1410050 | AT1G21000.2 | 38.492 | 252 | 128 | 9 | 3 | 244 | 9 | 243 | 1.50e-44 | 150 |
| Msa1410050 | AT4G17900.1 | 50.360 | 139 | 58 | 4 | 8 | 145 | 35 | 163 | 1.80e-40 | 139 |
| Msa1410050 | AT1G32700.1 | 36.287 | 237 | 106 | 5 | 9 | 244 | 14 | 206 | 1.88e-40 | 139 |
| Msa1410050 | AT4G17900.2 | 50.360 | 139 | 58 | 4 | 8 | 145 | 21 | 149 | 4.54e-40 | 137 |
| Msa1410050 | AT1G76590.1 | 35.628 | 247 | 129 | 9 | 8 | 244 | 19 | 245 | 9.26e-40 | 138 |
| Msa1410050 | AT2G27930.1 | 47.857 | 140 | 67 | 3 | 9 | 145 | 6 | 142 | 2.50e-35 | 124 |
| Msa1410050 | AT2G27930.4 | 47.857 | 140 | 67 | 3 | 9 | 145 | 6 | 142 | 2.50e-35 | 124 |
| Msa1410050 | AT2G27930.3 | 48.175 | 137 | 65 | 3 | 9 | 142 | 6 | 139 | 6.85e-35 | 123 |
| Msa1410050 | AT2G27930.2 | 48.175 | 137 | 65 | 3 | 9 | 142 | 6 | 139 | 6.85e-35 | 123 |
| Msa1410050 | AT1G32700.2 | 35.407 | 209 | 91 | 4 | 37 | 244 | 2 | 167 | 2.37e-32 | 116 |
| Msa1410050 | AT5G46710.3 | 33.891 | 239 | 112 | 9 | 9 | 244 | 14 | 209 | 3.33e-29 | 109 |
| Msa1410050 | AT5G46710.1 | 33.891 | 239 | 112 | 9 | 9 | 244 | 30 | 225 | 5.81e-29 | 109 |
| Msa1410050 | AT5G46710.2 | 42.222 | 135 | 67 | 4 | 9 | 142 | 30 | 154 | 5.54e-28 | 105 |
| Msa1410050 | AT1G31040.1 | 29.796 | 245 | 140 | 7 | 9 | 244 | 21 | 242 | 1.77e-27 | 105 |
| Msa1410050 | AT2G12646.1 | 38.060 | 134 | 72 | 5 | 9 | 142 | 8 | 130 | 7.20e-20 | 85.9 |
| Msa1410050 | AT2G12646.2 | 38.060 | 134 | 72 | 5 | 9 | 142 | 8 | 130 | 7.20e-20 | 85.9 |
| Msa1410050 | AT2G12646.3 | 38.060 | 134 | 72 | 5 | 9 | 142 | 5 | 127 | 8.23e-20 | 85.9 |
| Msa1410050 | AT3G60670.1 | 38.806 | 134 | 71 | 4 | 9 | 142 | 9 | 131 | 5.42e-19 | 83.6 |
| Msa1410050 | AT2G27930.5 | 49.425 | 87 | 39 | 2 | 62 | 145 | 61 | 145 | 5.09e-18 | 79.7 |
| Msa1410050 | AT2G27930.6 | 49.425 | 87 | 39 | 2 | 62 | 145 | 61 | 145 | 5.09e-18 | 79.7 |
| Msa1410050 | AT2G01818.1 | 29.918 | 244 | 130 | 10 | 9 | 245 | 13 | 222 | 1.02e-16 | 76.6 |
Find 30 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAAAGGAATACCTTAT+AGG | 0.254520 | tig0023613:-42484 | Msa1410050:CDS |
| TTACCAATCTTGTACCTCTT+AGG | 0.298690 | tig0023613:+43642 | None:intergenic |
| CATAAAAGAGATGGAAGAAA+TGG | 0.327529 | tig0023613:-42738 | Msa1410050:CDS |
| AAGAAAAGGAATACCTTATA+GGG | 0.333491 | tig0023613:-42483 | Msa1410050:CDS |
| TTTATGCAAGATCCACATAA+TGG | 0.340696 | tig0023613:+43985 | None:intergenic |
| GGAAGAGGAAGAAGAGCAAA+AGG | 0.388538 | tig0023613:-42594 | Msa1410050:CDS |
| AGGTACAAGATTGGTAAAAT+TGG | 0.400779 | tig0023613:-43636 | Msa1410050:CDS |
| CAACACTTACTTGGATTACT+CGG | 0.451223 | tig0023613:+43944 | None:intergenic |
| CAATCTTGTACCTCTTAGGT+TGG | 0.478301 | tig0023613:+43646 | None:intergenic |
| AAGTCCAATTCAAGAAGAAA+AGG | 0.488785 | tig0023613:-42497 | Msa1410050:CDS |
| AATCTTGTACCTCTTAGGTT+GGG | 0.514191 | tig0023613:+43647 | None:intergenic |
| TACAAGCATGTTGACATCCT+CGG | 0.515051 | tig0023613:-43729 | Msa1410050:CDS |
| TGCAATGGCAATCCATTATG+TGG | 0.515095 | tig0023613:-43997 | Msa1410050:CDS |
| GAGCTCGTGCCCAACCTAAG+AGG | 0.520699 | tig0023613:-43656 | Msa1410050:CDS |
| ATTGATGAAGAAAATGAAGA+GGG | 0.521661 | tig0023613:-42617 | Msa1410050:CDS |
| TTTCGTAAGCATAAAAGAGA+TGG | 0.525934 | tig0023613:-42747 | Msa1410050:CDS |
| CAACCTAAGAGGTACAAGAT+TGG | 0.546024 | tig0023613:-43645 | Msa1410050:CDS |
| AGGATATGATGTTGGTACCC+TGG | 0.557529 | tig0023613:-44113 | Msa1410050:CDS |
| GACATGCGATAGAAATCTTG+TGG | 0.559118 | tig0023613:-43589 | Msa1410050:CDS |
| AAACGAAAACAAGAAGAAGC+AGG | 0.562891 | tig0023613:-42641 | Msa1410050:CDS |
| ATTGCTGCATGAATCAATCA+AGG | 0.566797 | tig0023613:-42711 | Msa1410050:CDS |
| AATTGATGAAGAAAATGAAG+AGG | 0.587208 | tig0023613:-42618 | Msa1410050:CDS |
| AACATGCTTGTAAATTTCAG+TGG | 0.588826 | tig0023613:+43740 | None:intergenic |
| ATGGATTGCCATTGCAATCG+AGG | 0.594757 | tig0023613:+44004 | None:intergenic |
| TCACGTAGGTTTGAATTCCG+AGG | 0.612981 | tig0023613:+43712 | None:intergenic |
| TGATGAAGAAAATGAAGAGG+GGG | 0.616125 | tig0023613:-42615 | Msa1410050:CDS |
| AAGTTCTGCCTCGATTGCAA+TGG | 0.617127 | tig0023613:-44012 | Msa1410050:CDS |
| GCATGCCAAAGAGCAAAAGT+AGG | 0.621061 | tig0023613:+43560 | None:intergenic |
| TTGATGAAGAAAATGAAGAG+GGG | 0.641325 | tig0023613:-42616 | Msa1410050:CDS |
| AGTAGAGCTATTGATCACGT+AGG | 0.696424 | tig0023613:+43698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCATTTTTTTTTTACTT+TGG | - | tig0023613:42830-42849 | Msa1410050:intron | 10.0% |
| !!! | ATATATTTTAAAATAGTGTT+TGG | - | tig0023613:43229-43248 | Msa1410050:intron | 10.0% |
| !!! | ATTGAGAATAATTTTTTTAT+TGG | - | tig0023613:43259-43278 | Msa1410050:intron | 10.0% |
| !!! | TAATCATTTTTTTTTTACTT+TGG | - | tig0023613:42830-42849 | Msa1410050:intron | 10.0% |
| !!! | ATATATTTTAAAATAGTGTT+TGG | - | tig0023613:43229-43248 | Msa1410050:intron | 10.0% |
| !!! | ATTGAGAATAATTTTTTTAT+TGG | - | tig0023613:43259-43278 | Msa1410050:intron | 10.0% |
| !!! | AATTTTTGTCTTTTTTTCTT+AGG | - | tig0023613:42534-42553 | Msa1410050:CDS | 15.0% |
| !! | TTGCAATTATAAATTAGATA+AGG | - | tig0023613:42876-42895 | Msa1410050:intron | 15.0% |
| !! | AATAAAAAGAAACTATCAAA+TGG | + | tig0023613:43666-43685 | None:intergenic | 15.0% |
| !!! | ATAAAAAGTACTAGTTTTTA+TGG | + | tig0023613:43713-43732 | None:intergenic | 15.0% |
| !! | CAAGTTTGAATATATAAAAA+AGG | - | tig0023613:43887-43906 | Msa1410050:intron | 15.0% |
| !! | TTTGAATATATAAAAAAGGA+GGG | - | tig0023613:43891-43910 | Msa1410050:intron | 15.0% |
| !!! | AATTTTTGTCTTTTTTTCTT+AGG | - | tig0023613:42534-42553 | Msa1410050:CDS | 15.0% |
| !! | TTGCAATTATAAATTAGATA+AGG | - | tig0023613:42876-42895 | Msa1410050:intron | 15.0% |
| !! | AATAAAAAGAAACTATCAAA+TGG | + | tig0023613:43666-43685 | None:intergenic | 15.0% |
| !!! | ATAAAAAGTACTAGTTTTTA+TGG | + | tig0023613:43713-43732 | None:intergenic | 15.0% |
| !! | CAAGTTTGAATATATAAAAA+AGG | - | tig0023613:43887-43906 | Msa1410050:intron | 15.0% |
| !! | TTTGAATATATAAAAAAGGA+GGG | - | tig0023613:43891-43910 | Msa1410050:intron | 15.0% |
| !! | TTTATAATTGCAAGTATCAA+GGG | + | tig0023613:42869-42888 | None:intergenic | 20.0% |
| !! | ATTTATAATTGCAAGTATCA+AGG | + | tig0023613:42870-42889 | None:intergenic | 20.0% |
| !!! | AGATTAGAATATATTTTCAC+TGG | - | tig0023613:43308-43327 | Msa1410050:intron | 20.0% |
| !! | GTTTGAATATATAAAAAAGG+AGG | - | tig0023613:43890-43909 | Msa1410050:intron | 20.0% |
| !!! | GATATTTTAGCTTTTTCTTT+TGG | + | tig0023613:43990-44009 | None:intergenic | 20.0% |
| !! | TTTATAATTGCAAGTATCAA+GGG | + | tig0023613:42869-42888 | None:intergenic | 20.0% |
| !! | ATTTATAATTGCAAGTATCA+AGG | + | tig0023613:42870-42889 | None:intergenic | 20.0% |
| !!! | AGATTAGAATATATTTTCAC+TGG | - | tig0023613:43308-43327 | Msa1410050:intron | 20.0% |
| !! | GTTTGAATATATAAAAAAGG+AGG | - | tig0023613:43890-43909 | Msa1410050:intron | 20.0% |
| !!! | GATATTTTAGCTTTTTCTTT+TGG | + | tig0023613:43990-44009 | None:intergenic | 20.0% |
| !! | TTTTTCTTAGGATATGATGT+TGG | - | tig0023613:42546-42565 | Msa1410050:CDS | 25.0% |
| ! | TTATCATATCTCTTTGATGT+TGG | - | tig0023613:43170-43189 | Msa1410050:intron | 25.0% |
| ! | AACTAGACAGAAAATTAGAA+TGG | - | tig0023613:43637-43656 | Msa1410050:CDS | 25.0% |
| ! | ACTAGACAGAAAATTAGAAT+GGG | - | tig0023613:43638-43657 | Msa1410050:CDS | 25.0% |
| ! | TTTGGATCAATAGAAATGAA+TGG | + | tig0023613:43737-43756 | None:intergenic | 25.0% |
| ! | ATTTCTATTGATCCAAACAT+TGG | - | tig0023613:43740-43759 | Msa1410050:CDS | 25.0% |
| !! | AATGAAAGAAAGAAAAGCAT+AGG | + | tig0023613:43788-43807 | None:intergenic | 25.0% |
| ! | AATTGATGAAGAAAATGAAG+AGG | - | tig0023613:44049-44068 | Msa1410050:CDS | 25.0% |
| ! | ATTGATGAAGAAAATGAAGA+GGG | - | tig0023613:44050-44069 | Msa1410050:CDS | 25.0% |
| !! | TATTCCTTTTCTTCTTGAAT+TGG | + | tig0023613:44177-44196 | None:intergenic | 25.0% |
| ! | AAGAAAAGGAATACCTTATA+GGG | - | tig0023613:44184-44203 | Msa1410050:intron | 25.0% |
| !! | TTTTTCTTAGGATATGATGT+TGG | - | tig0023613:42546-42565 | Msa1410050:CDS | 25.0% |
| ! | TTATCATATCTCTTTGATGT+TGG | - | tig0023613:43170-43189 | Msa1410050:intron | 25.0% |
| ! | AACTAGACAGAAAATTAGAA+TGG | - | tig0023613:43637-43656 | Msa1410050:CDS | 25.0% |
| ! | ACTAGACAGAAAATTAGAAT+GGG | - | tig0023613:43638-43657 | Msa1410050:CDS | 25.0% |
| ! | TTTGGATCAATAGAAATGAA+TGG | + | tig0023613:43737-43756 | None:intergenic | 25.0% |
| ! | ATTTCTATTGATCCAAACAT+TGG | - | tig0023613:43740-43759 | Msa1410050:CDS | 25.0% |
| !! | AATGAAAGAAAGAAAAGCAT+AGG | + | tig0023613:43788-43807 | None:intergenic | 25.0% |
| ! | AATTGATGAAGAAAATGAAG+AGG | - | tig0023613:44049-44068 | Msa1410050:CDS | 25.0% |
| ! | ATTGATGAAGAAAATGAAGA+GGG | - | tig0023613:44050-44069 | Msa1410050:CDS | 25.0% |
| !! | TATTCCTTTTCTTCTTGAAT+TGG | + | tig0023613:44177-44196 | None:intergenic | 25.0% |
| ! | AAGAAAAGGAATACCTTATA+GGG | - | tig0023613:44184-44203 | Msa1410050:intron | 25.0% |
| TTTATGCAAGATCCACATAA+TGG | + | tig0023613:42685-42704 | None:intergenic | 30.0% | |
| CAAACTAAACAACACTTACT+TGG | + | tig0023613:42735-42754 | None:intergenic | 30.0% | |
| AACATGCTTGTAAATTTCAG+TGG | + | tig0023613:42930-42949 | None:intergenic | 30.0% | |
| AGGTACAAGATTGGTAAAAT+TGG | - | tig0023613:43031-43050 | Msa1410050:intron | 30.0% | |
| GAAAAAAAGAAGTGAGATTG+AGG | + | tig0023613:43148-43167 | None:intergenic | 30.0% | |
| !! | TCTAATTTTCTGTCTAGTTC+AGG | + | tig0023613:43636-43655 | None:intergenic | 30.0% |
| ! | CATTATTTTCCTCCAATGTT+TGG | + | tig0023613:43755-43774 | None:intergenic | 30.0% |
| CAAACATTGGAGGAAAATAA+TGG | - | tig0023613:43753-43772 | Msa1410050:CDS | 30.0% | |
| ! | AAATAACGAAAGTGCAACAA+TGG | + | tig0023613:43813-43832 | None:intergenic | 30.0% |
| GAATATATAAAAAAGGAGGG+AGG | - | tig0023613:43894-43913 | Msa1410050:intron | 30.0% | |
| TTTCGTAAGCATAAAAGAGA+TGG | - | tig0023613:43920-43939 | Msa1410050:intron | 30.0% | |
| CATAAAAGAGATGGAAGAAA+TGG | - | tig0023613:43929-43948 | Msa1410050:intron | 30.0% | |
| TTGATGAAGAAAATGAAGAG+GGG | - | tig0023613:44051-44070 | Msa1410050:CDS | 30.0% | |
| AAGGAAGAAGAAAAAGAAGA+AGG | - | tig0023613:44092-44111 | Msa1410050:CDS | 30.0% | |
| AAGTCCAATTCAAGAAGAAA+AGG | - | tig0023613:44170-44189 | Msa1410050:intron | 30.0% | |
| GAAGAAAAGGAATACCTTAT+AGG | - | tig0023613:44183-44202 | Msa1410050:intron | 30.0% | |
| !! | TAAAAAAAAGGTGCCCTATA+AGG | + | tig0023613:44200-44219 | None:intergenic | 30.0% |
| TTTATGCAAGATCCACATAA+TGG | + | tig0023613:42685-42704 | None:intergenic | 30.0% | |
| CAAACTAAACAACACTTACT+TGG | + | tig0023613:42735-42754 | None:intergenic | 30.0% | |
| AACATGCTTGTAAATTTCAG+TGG | + | tig0023613:42930-42949 | None:intergenic | 30.0% | |
| AGGTACAAGATTGGTAAAAT+TGG | - | tig0023613:43031-43050 | Msa1410050:intron | 30.0% | |
| GAAAAAAAGAAGTGAGATTG+AGG | + | tig0023613:43148-43167 | None:intergenic | 30.0% | |
| !! | TCTAATTTTCTGTCTAGTTC+AGG | + | tig0023613:43636-43655 | None:intergenic | 30.0% |
| ! | CATTATTTTCCTCCAATGTT+TGG | + | tig0023613:43755-43774 | None:intergenic | 30.0% |
| CAAACATTGGAGGAAAATAA+TGG | - | tig0023613:43753-43772 | Msa1410050:CDS | 30.0% | |
| ! | AAATAACGAAAGTGCAACAA+TGG | + | tig0023613:43813-43832 | None:intergenic | 30.0% |
| GAATATATAAAAAAGGAGGG+AGG | - | tig0023613:43894-43913 | Msa1410050:intron | 30.0% | |
| TTTCGTAAGCATAAAAGAGA+TGG | - | tig0023613:43920-43939 | Msa1410050:intron | 30.0% | |
| CATAAAAGAGATGGAAGAAA+TGG | - | tig0023613:43929-43948 | Msa1410050:intron | 30.0% | |
| TTGATGAAGAAAATGAAGAG+GGG | - | tig0023613:44051-44070 | Msa1410050:CDS | 30.0% | |
| AAGGAAGAAGAAAAAGAAGA+AGG | - | tig0023613:44092-44111 | Msa1410050:CDS | 30.0% | |
| AAGTCCAATTCAAGAAGAAA+AGG | - | tig0023613:44170-44189 | Msa1410050:intron | 30.0% | |
| GAAGAAAAGGAATACCTTAT+AGG | - | tig0023613:44183-44202 | Msa1410050:intron | 30.0% | |
| !! | TAAAAAAAAGGTGCCCTATA+AGG | + | tig0023613:44200-44219 | None:intergenic | 30.0% |
| CAACACTTACTTGGATTACT+CGG | + | tig0023613:42726-42745 | None:intergenic | 35.0% | |
| AATCTTGTACCTCTTAGGTT+GGG | + | tig0023613:43023-43042 | None:intergenic | 35.0% | |
| TTACCAATCTTGTACCTCTT+AGG | + | tig0023613:43028-43047 | None:intergenic | 35.0% | |
| !! | TTCTACCTACTTTTGCTCTT+TGG | - | tig0023613:43102-43121 | Msa1410050:intron | 35.0% |
| ! | TTTCTGTCTAGTTCAGGATT+AGG | + | tig0023613:43630-43649 | None:intergenic | 35.0% |
| TCTATTGATCCAAACATTGG+AGG | - | tig0023613:43743-43762 | Msa1410050:CDS | 35.0% | |
| ATTGCTGCATGAATCAATCA+AGG | - | tig0023613:43956-43975 | Msa1410050:CDS | 35.0% | |
| AAACGAAAACAAGAAGAAGC+AGG | - | tig0023613:44026-44045 | Msa1410050:CDS | 35.0% | |
| TGATGAAGAAAATGAAGAGG+GGG | - | tig0023613:44052-44071 | Msa1410050:CDS | 35.0% | |
| CAACACTTACTTGGATTACT+CGG | + | tig0023613:42726-42745 | None:intergenic | 35.0% | |
| AATCTTGTACCTCTTAGGTT+GGG | + | tig0023613:43023-43042 | None:intergenic | 35.0% | |
| TTACCAATCTTGTACCTCTT+AGG | + | tig0023613:43028-43047 | None:intergenic | 35.0% | |
| !! | TTCTACCTACTTTTGCTCTT+TGG | - | tig0023613:43102-43121 | Msa1410050:intron | 35.0% |
| ! | TTTCTGTCTAGTTCAGGATT+AGG | + | tig0023613:43630-43649 | None:intergenic | 35.0% |
| TCTATTGATCCAAACATTGG+AGG | - | tig0023613:43743-43762 | Msa1410050:CDS | 35.0% | |
| ATTGCTGCATGAATCAATCA+AGG | - | tig0023613:43956-43975 | Msa1410050:CDS | 35.0% | |
| AAACGAAAACAAGAAGAAGC+AGG | - | tig0023613:44026-44045 | Msa1410050:CDS | 35.0% | |
| TGATGAAGAAAATGAAGAGG+GGG | - | tig0023613:44052-44071 | Msa1410050:CDS | 35.0% | |
| ACCCTGGTTAGAAAAATTGC+TGG | - | tig0023613:42570-42589 | Msa1410050:CDS | 40.0% | |
| ! | GCCAGCAATTTTTCTAACCA+GGG | + | tig0023613:42574-42593 | None:intergenic | 40.0% |
| ! | TGCCAGCAATTTTTCTAACC+AGG | + | tig0023613:42575-42594 | None:intergenic | 40.0% |
| !! | CATTTTTCGACTCTCTTGGA+TGG | + | tig0023613:42627-42646 | None:intergenic | 40.0% |
| !! | CACTCATTTTTCGACTCTCT+TGG | + | tig0023613:42631-42650 | None:intergenic | 40.0% |
| TGCAATGGCAATCCATTATG+TGG | - | tig0023613:42670-42689 | Msa1410050:CDS | 40.0% | |
| TACAAGCATGTTGACATCCT+CGG | - | tig0023613:42938-42957 | Msa1410050:intron | 40.0% | |
| AGTAGAGCTATTGATCACGT+AGG | + | tig0023613:42972-42991 | None:intergenic | 40.0% | |
| CAATCTTGTACCTCTTAGGT+TGG | + | tig0023613:43024-43043 | None:intergenic | 40.0% | |
| ! | CAACCTAAGAGGTACAAGAT+TGG | - | tig0023613:43022-43041 | Msa1410050:intron | 40.0% |
| GACATGCGATAGAAATCTTG+TGG | - | tig0023613:43078-43097 | Msa1410050:intron | 40.0% | |
| TGGCATGCAAGGTAAATTCT+TGG | - | tig0023613:43122-43141 | Msa1410050:intron | 40.0% | |
| ACCCTGGTTAGAAAAATTGC+TGG | - | tig0023613:42570-42589 | Msa1410050:CDS | 40.0% | |
| ! | GCCAGCAATTTTTCTAACCA+GGG | + | tig0023613:42574-42593 | None:intergenic | 40.0% |
| ! | TGCCAGCAATTTTTCTAACC+AGG | + | tig0023613:42575-42594 | None:intergenic | 40.0% |
| !! | CATTTTTCGACTCTCTTGGA+TGG | + | tig0023613:42627-42646 | None:intergenic | 40.0% |
| !! | CACTCATTTTTCGACTCTCT+TGG | + | tig0023613:42631-42650 | None:intergenic | 40.0% |
| TGCAATGGCAATCCATTATG+TGG | - | tig0023613:42670-42689 | Msa1410050:CDS | 40.0% | |
| TACAAGCATGTTGACATCCT+CGG | - | tig0023613:42938-42957 | Msa1410050:intron | 40.0% | |
| AGTAGAGCTATTGATCACGT+AGG | + | tig0023613:42972-42991 | None:intergenic | 40.0% | |
| CAATCTTGTACCTCTTAGGT+TGG | + | tig0023613:43024-43043 | None:intergenic | 40.0% | |
| ! | CAACCTAAGAGGTACAAGAT+TGG | - | tig0023613:43022-43041 | Msa1410050:intron | 40.0% |
| GACATGCGATAGAAATCTTG+TGG | - | tig0023613:43078-43097 | Msa1410050:intron | 40.0% | |
| TGGCATGCAAGGTAAATTCT+TGG | - | tig0023613:43122-43141 | Msa1410050:intron | 40.0% | |
| AGGATATGATGTTGGTACCC+TGG | - | tig0023613:42554-42573 | Msa1410050:CDS | 45.0% | |
| AAGTTCTGCCTCGATTGCAA+TGG | - | tig0023613:42655-42674 | Msa1410050:CDS | 45.0% | |
| ! | ATGGATTGCCATTGCAATCG+AGG | + | tig0023613:42666-42685 | None:intergenic | 45.0% |
| TCACGTAGGTTTGAATTCCG+AGG | + | tig0023613:42958-42977 | None:intergenic | 45.0% | |
| GCATGCCAAAGAGCAAAAGT+AGG | + | tig0023613:43110-43129 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | - | tig0023613:43111-43130 | Msa1410050:intron | 45.0% |
| ! | GTCTAGTTCAGGATTAGGAC+TGG | + | tig0023613:43625-43644 | None:intergenic | 45.0% |
| AGAAAATGAAGAGGGGGAAG+AGG | - | tig0023613:44058-44077 | Msa1410050:CDS | 45.0% | |
| GGAAGAGGAAGAAGAGCAAA+AGG | - | tig0023613:44073-44092 | Msa1410050:CDS | 45.0% | |
| AGGATATGATGTTGGTACCC+TGG | - | tig0023613:42554-42573 | Msa1410050:CDS | 45.0% | |
| AAGTTCTGCCTCGATTGCAA+TGG | - | tig0023613:42655-42674 | Msa1410050:CDS | 45.0% | |
| ! | ATGGATTGCCATTGCAATCG+AGG | + | tig0023613:42666-42685 | None:intergenic | 45.0% |
| TCACGTAGGTTTGAATTCCG+AGG | + | tig0023613:42958-42977 | None:intergenic | 45.0% | |
| GCATGCCAAAGAGCAAAAGT+AGG | + | tig0023613:43110-43129 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | - | tig0023613:43111-43130 | Msa1410050:intron | 45.0% |
| ! | GTCTAGTTCAGGATTAGGAC+TGG | + | tig0023613:43625-43644 | None:intergenic | 45.0% |
| AGAAAATGAAGAGGGGGAAG+AGG | - | tig0023613:44058-44077 | Msa1410050:CDS | 45.0% | |
| GGAAGAGGAAGAAGAGCAAA+AGG | - | tig0023613:44073-44092 | Msa1410050:CDS | 45.0% | |
| GAGCTCGTGCCCAACCTAAG+AGG | - | tig0023613:43011-43030 | Msa1410050:intron | 60.0% | |
| GAGCTCGTGCCCAACCTAAG+AGG | - | tig0023613:43011-43030 | Msa1410050:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023613 | gene | 42469 | 44220 | 42469 | ID=Msa1410050;Name=Msa1410050 |
| tig0023613 | mRNA | 42469 | 44220 | 42469 | ID=Msa1410050-mRNA-1;Parent=Msa1410050;Name=Msa1410050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.75|0.66|0.75|4|0|245 |
| tig0023613 | exon | 44215 | 44220 | 44215 | ID=Msa1410050-mRNA-1:exon:26359;Parent=Msa1410050-mRNA-1 |
| tig0023613 | exon | 43954 | 44133 | 43954 | ID=Msa1410050-mRNA-1:exon:26358;Parent=Msa1410050-mRNA-1 |
| tig0023613 | exon | 43557 | 43796 | 43557 | ID=Msa1410050-mRNA-1:exon:26357;Parent=Msa1410050-mRNA-1 |
| tig0023613 | exon | 42469 | 42780 | 42469 | ID=Msa1410050-mRNA-1:exon:26356;Parent=Msa1410050-mRNA-1 |
| tig0023613 | CDS | 44215 | 44220 | 44215 | ID=Msa1410050-mRNA-1:cds;Parent=Msa1410050-mRNA-1 |
| tig0023613 | CDS | 43954 | 44133 | 43954 | ID=Msa1410050-mRNA-1:cds;Parent=Msa1410050-mRNA-1 |
| tig0023613 | CDS | 43557 | 43796 | 43557 | ID=Msa1410050-mRNA-1:cds;Parent=Msa1410050-mRNA-1 |
| tig0023613 | CDS | 42469 | 42780 | 42469 | ID=Msa1410050-mRNA-1:cds;Parent=Msa1410050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
