AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1410560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410560 MtrunA17_Chr4g0063461 90.500 600 32 4 1 581 1 594 0.0 1072
Msa1410560 MtrunA17_Chr8g0375251 30.177 623 298 23 7 578 117 653 6.11e-48 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410560 AT2G02160.1 61.864 118 35 3 2 110 25 141 3.85e-41 158

Find 128 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGTTGGTATTGGTTATC+TGG 0.119856 tig0023670:-64880 Msa1410560:CDS
CACCGATTGCGTTTATTTCT+TGG 0.184040 tig0023670:-65242 Msa1410560:CDS
TTGCTTCAAAATTTCTTCTT+TGG 0.213240 tig0023670:-63359 Msa1410560:CDS
CTTGCCTTTGATGCCTTTCC+CGG 0.220942 tig0023670:+62750 None:intergenic
TTTGCAGAGTCATTCTTTAA+AGG 0.222829 tig0023670:+63703 None:intergenic
TTGCTTCACAATTGGTTTCC+TGG 0.230232 tig0023670:+62547 None:intergenic
TTTGCAGAGTCATTCTTTAA+AGG 0.231560 tig0023670:+63679 None:intergenic
TTACACTAACATTACGATTA+TGG 0.244673 tig0023670:+65360 None:intergenic
TTAATATCGGACAAAGCTTT+TGG 0.255089 tig0023670:+63433 None:intergenic
AATAAACCCAACTTAGAAAA+TGG 0.256208 tig0023670:-63532 Msa1410560:CDS
CATTCAGAGGTTTGGGATCC+TGG 0.288878 tig0023670:+62408 None:intergenic
GCTTTCTTGGCCTACTTTGC+TGG 0.293087 tig0023670:+62618 None:intergenic
CCAACAAGCAAAGGTTATTC+AGG 0.302583 tig0023670:-62646 Msa1410560:CDS
GAGAATTTCATTCAGAGGTT+TGG 0.311271 tig0023670:+62400 None:intergenic
AGAATTTCATTCAGAGGTTT+GGG 0.313834 tig0023670:+62401 None:intergenic
ACATGAGTCGTCTTCTTTGA+TGG 0.333051 tig0023670:-62780 Msa1410560:CDS
CCTGAATAACCTTTGCTTGT+TGG 0.334230 tig0023670:+62646 None:intergenic
CGCTGATATTCTTTATGAAC+AGG 0.343310 tig0023670:-63032 Msa1410560:CDS
GGTTTCCTGGATTCTTTAGA+AGG 0.343832 tig0023670:+62560 None:intergenic
CTTGGCCTACTTTGCTGGTA+AGG 0.345619 tig0023670:+62623 None:intergenic
AGTATTGCTCATTCAGTTCA+TGG 0.346407 tig0023670:+63104 None:intergenic
TTTATTTCTGCAAGAGTCTT+GGG 0.348071 tig0023670:+62488 None:intergenic
GTTCTTGTTCATGATGAATC+TGG 0.352114 tig0023670:-63184 Msa1410560:CDS
CTTCTTTGATGGTTCAAAAC+CGG 0.368582 tig0023670:-62769 Msa1410560:CDS
ATATTTGCCAGTGCTTGATA+TGG 0.374679 tig0023670:-63131 Msa1410560:CDS
GCCATCTCTCACTCAATCTA+TGG 0.380953 tig0023670:+62367 None:intergenic
TGGGAACAACCTGGGTTATG+AGG 0.406841 tig0023670:-63164 Msa1410560:CDS
GGCTTAACCCGAGGGATTGT+TGG 0.407402 tig0023670:-64894 Msa1410560:CDS
TCGGGTAATGGTAGCACCTT+AGG 0.408765 tig0023670:+63403 None:intergenic
AAGCTCGTCAGCTGGTTTCC+AGG 0.411618 tig0023670:-62426 Msa1410560:CDS
GATCTCTGTTGCTTCACAAT+TGG 0.413086 tig0023670:+62539 None:intergenic
ACCCGAGGGATTGTTGGTAT+TGG 0.421246 tig0023670:-64888 Msa1410560:CDS
ATTGTTGGTATTGGTTATCT+GGG 0.423158 tig0023670:-64879 Msa1410560:CDS
TTAGAAAATGGAACTGCATC+GGG 0.423544 tig0023670:-63520 Msa1410560:CDS
TTATGAGCAACGCCGTCGTC+TGG 0.423938 tig0023670:+63295 None:intergenic
AGTATCTAAGACCATCTCTC+TGG 0.436807 tig0023670:+62937 None:intergenic
GGAGGAAATGGCCGTTTAGC+TGG 0.441000 tig0023670:+62581 None:intergenic
TTCTTTGATGGTTCAAAACC+GGG 0.442952 tig0023670:-62768 Msa1410560:CDS
CTTCCATTGTCATTCTTCAA+AGG 0.447586 tig0023670:+63559 None:intergenic
TGAACTGAATGAGCAATACT+TGG 0.452267 tig0023670:-63101 Msa1410560:CDS
TTCACAATGTGAACTTTCAC+CGG 0.467502 tig0023670:+62448 None:intergenic
CTTAGGCTGAGGTTTAATAT+CGG 0.475768 tig0023670:+63420 None:intergenic
TCAGGCCTTACCAGCAAAGT+AGG 0.477593 tig0023670:-62628 Msa1410560:CDS
GATTCTTTAGAAGGAGGAAA+TGG 0.479581 tig0023670:+62569 None:intergenic
CATTGTGAAAGCTCGTCAGC+TGG 0.479616 tig0023670:-62434 Msa1410560:CDS
ACTGCAAAGCCTTTGAAGAA+TGG 0.483365 tig0023670:-63640 Msa1410560:CDS
TTCCTCCTTCTAAAGAATCC+AGG 0.492036 tig0023670:-62565 Msa1410560:CDS
TGAACAAGAACATCAAATCC+AGG 0.492763 tig0023670:+63196 None:intergenic
TGAATGAAATTCTCAAAGAC+AGG 0.493790 tig0023670:-62391 Msa1410560:CDS
TGATGAATCTGGGAACAACC+TGG 0.493882 tig0023670:-63173 Msa1410560:CDS
GCAACGCCGTCGTCTGGTAA+TGG 0.495107 tig0023670:+63301 None:intergenic
CCACAAACTTTCCTTTCACT+AGG 0.496086 tig0023670:+62965 None:intergenic
TTCACCCCTCACTTGCAAGA+AGG 0.501218 tig0023670:-65218 Msa1410560:intron
TGATGGTTCAAAACCGGGAA+AGG 0.501541 tig0023670:-62763 Msa1410560:CDS
ACTCCAGTGTGTCCATCCAC+AGG 0.509244 tig0023670:+63919 None:intergenic
CTTCTTAAGAGACCTGTGTC+AGG 0.510576 tig0023670:+62803 None:intergenic
CTTGGGCCCTGAAAATGCAT+TGG 0.511654 tig0023670:+62505 None:intergenic
TTTCCAGCGTCATTCTTCAA+AGG 0.516545 tig0023670:+63751 None:intergenic
CTCTCTCAGTGTAACGAACA+TGG 0.517720 tig0023670:-65287 Msa1410560:exon
ACAGTGAGCGAGCTATCATC+AGG 0.522943 tig0023670:+63778 None:intergenic
TTTGCAGCGTCATTCTTCAA+AGG 0.523060 tig0023670:+63727 None:intergenic
GAAGATTGTGCAGGTTCAGA+TGG 0.529009 tig0023670:+63895 None:intergenic
TTCTTGTTCATGATGAATCT+GGG 0.535477 tig0023670:-63183 Msa1410560:CDS
TTCACAGTGTCAATCTTCAA+AGG 0.538247 tig0023670:+63607 None:intergenic
AGCCAAGAAATAAACGCAAT+CGG 0.538661 tig0023670:+65240 None:intergenic
TTCACAGTGTCAATCTTCAA+AGG 0.539488 tig0023670:+63583 None:intergenic
TTTCAATTGCCAACAAGCAA+AGG 0.539740 tig0023670:-62655 Msa1410560:CDS
TTGAACCTTCTTGCAAGTGA+GGG 0.541701 tig0023670:+65213 None:intergenic
CTTAGAAAATGGAACTGCAT+CGG 0.543707 tig0023670:-63521 Msa1410560:CDS
CCTAGTGAAAGGAAAGTTTG+TGG 0.543844 tig0023670:-62965 Msa1410560:CDS
TTTGCAGAGCCATTCTTCAA+AGG 0.546293 tig0023670:+63631 None:intergenic
GAACTCTGCTCAGTGAATGA+AGG 0.549641 tig0023670:+63265 None:intergenic
AACCAATACCAACAATCCCT+CGG 0.549767 tig0023670:+64886 None:intergenic
ACCAATACCAACAATCCCTC+GGG 0.552430 tig0023670:+64887 None:intergenic
TTTGCAGTGTCAATCTTCAA+AGG 0.552856 tig0023670:+63655 None:intergenic
GAACTGAATGAGCAATACTT+GGG 0.554055 tig0023670:-63100 Msa1410560:CDS
GGGAACAACCTGGGTTATGA+GGG 0.557547 tig0023670:-63163 Msa1410560:CDS
GGTTAAGCCTCGCAATCTCA+TGG 0.558877 tig0023670:+64908 None:intergenic
CGATATTAAACCTCAGCCTA+AGG 0.559436 tig0023670:-63419 Msa1410560:CDS
ATTGAACCTTCTTGCAAGTG+AGG 0.561506 tig0023670:+65212 None:intergenic
AAAACCGGGAAAGGCATCAA+AGG 0.564085 tig0023670:-62754 Msa1410560:CDS
ATTCACTGAGCAGAGTTCAG+AGG 0.565256 tig0023670:-63260 Msa1410560:CDS
ACAAGCAGCCATCTCAGAAG+TGG 0.566131 tig0023670:+62886 None:intergenic
TCTTTGAGAATTTCATTCAG+AGG 0.567578 tig0023670:+62395 None:intergenic
TCGAATGTCCACTTCTGAGA+TGG 0.567972 tig0023670:-62894 Msa1410560:CDS
ATAAAGAAGCTGCTGTGACT+CGG 0.570342 tig0023670:-63333 Msa1410560:CDS
AATGGTAGCACCTTAGGCTG+AGG 0.571158 tig0023670:+63409 None:intergenic
GATTACGACACTATGTGCTC+AGG 0.573085 tig0023670:-63055 Msa1410560:CDS
CAGCCTGTGGATGGACACAC+TGG 0.576235 tig0023670:-63922 Msa1410560:CDS
GTATCTAAGACCATCTCTCT+GGG 0.580465 tig0023670:+62938 None:intergenic
TGGTCATCCATATCAAGCAC+TGG 0.581438 tig0023670:+63124 None:intergenic
TTCCTGGATTCTTTAGAAGG+AGG 0.583182 tig0023670:+62563 None:intergenic
TGGTTTAAATGTGTATCCCT+TGG 0.586917 tig0023670:+63469 None:intergenic
AAATAGTCAAGTAGAGCCTG+AGG 0.587572 tig0023670:-63230 Msa1410560:CDS
GAACAAGAACATCAAATCCA+GGG 0.590993 tig0023670:+63197 None:intergenic
CCCGAAAATATTAAACAGCA+AGG 0.591141 tig0023670:-63385 Msa1410560:CDS
AGAAGATTAACATCACAAGT+AGG 0.593281 tig0023670:-62707 Msa1410560:CDS
GTCAATAGTCCTCCTGACAC+AGG 0.595790 tig0023670:-62815 Msa1410560:CDS
GCATGTAATGAAGATTGTGC+AGG 0.600024 tig0023670:+63886 None:intergenic
TTGTGGTTATCCCAGAGAGA+TGG 0.602992 tig0023670:-62948 Msa1410560:CDS
TGTTCGTTACACTGAGAGAG+AGG 0.609658 tig0023670:+65290 None:intergenic
TGAACCTTCTTGCAAGTGAG+GGG 0.613141 tig0023670:+65214 None:intergenic
GATGAATCTGGGAACAACCT+GGG 0.613350 tig0023670:-63172 Msa1410560:CDS
AGGGTGTAGAATGTGAGTAT+AGG 0.616264 tig0023670:-64933 Msa1410560:CDS
ACAATCTTCATTACATGCAA+CGG 0.616298 tig0023670:-63881 Msa1410560:CDS
AGGCATCAAAGGCAAGACAT+TGG 0.618149 tig0023670:-62743 Msa1410560:CDS
AACAACCTGGGTTATGAGGG+CGG 0.623566 tig0023670:-63160 Msa1410560:CDS
TGTAGCATCGTCCACACCAA+GGG 0.625248 tig0023670:-63485 Msa1410560:CDS
GATTGCGAGGCTTAACCCGA+GGG 0.627528 tig0023670:-64902 Msa1410560:CDS
GGGTGTCTAAAAGCACAAGT+TGG 0.629066 tig0023670:+64844 None:intergenic
AAGCCTTTGAAGAATGACGC+TGG 0.631477 tig0023670:-63754 Msa1410560:CDS
TAAATGTGTATCCCTTGGTG+TGG 0.636452 tig0023670:+63474 None:intergenic
GTCACCATCTGAGAAGACGC+AGG 0.644495 tig0023670:-62841 Msa1410560:CDS
GTCAAGTAGAGCCTGAGGAA+CGG 0.645293 tig0023670:-63225 Msa1410560:CDS
AAGCCTTTGAAGAATGACAA+TGG 0.648926 tig0023670:-63562 Msa1410560:CDS
GTGTAGCATCGTCCACACCA+AGG 0.650640 tig0023670:-63486 Msa1410560:CDS
TCACCATCTGAGAAGACGCA+GGG 0.650947 tig0023670:-62840 Msa1410560:CDS
CTTAAGAGACCTGTGTCAGG+AGG 0.654168 tig0023670:+62806 None:intergenic
ATAGGCACCATGAGATTGCG+AGG 0.657532 tig0023670:-64915 Msa1410560:CDS
AGATTGCGAGGCTTAACCCG+AGG 0.660519 tig0023670:-64903 Msa1410560:CDS
CAGAACCGCCCTCATAACCC+AGG 0.660881 tig0023670:+63155 None:intergenic
AACAAGAACATCAAATCCAG+GGG 0.675043 tig0023670:+63198 None:intergenic
AAGAACATCAAATCCAGGGG+AGG 0.679312 tig0023670:+63201 None:intergenic
AACTGAATGAGCAATACTTG+GGG 0.681764 tig0023670:-63099 Msa1410560:CDS
TGCAACGGCAAACAAGACAA+TGG 0.690022 tig0023670:-63866 Msa1410560:CDS
AAAGGCAAGACATTGGTCAG+CGG 0.696430 tig0023670:-62736 Msa1410560:CDS
GACTCTCCATTACCAGACGA+CGG 0.716277 tig0023670:-63307 Msa1410560:CDS
CCATCTGAGAAGACGCAGGG+AGG 0.719477 tig0023670:-62837 Msa1410560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGGAATAAATATAATTTTT+TGG - tig0023670:63334-63353 Msa1410560:CDS 10.0%
!!! AATTCTGTTTTTGTTTTTAA+TGG - tig0023670:62729-62748 Msa1410560:CDS 15.0%
!! AAAATATCAAATTAATGAAC+AGG - tig0023670:63621-63640 Msa1410560:CDS 15.0%
!! AAATTAATATGAAATTTGGA+GGG + tig0023670:63718-63737 None:intergenic 15.0%
!! AAAATTAATATGAAATTTGG+AGG + tig0023670:63719-63738 None:intergenic 15.0%
!! CGAAATAGAAAAGAAAATAT+GGG + tig0023670:62583-62602 None:intergenic 20.0%
!! ACGAAATAGAAAAGAAAATA+TGG + tig0023670:62584-62603 None:intergenic 20.0%
!!! TTGAAAATGTTGTAATCTTT+TGG - tig0023670:62996-63015 Msa1410560:CDS 20.0%
!!! TAAATTTTTGTTCTGTAAGT+AGG - tig0023670:63243-63262 Msa1410560:CDS 20.0%
!! TGTTTCTTAAAATATCAAGT+TGG - tig0023670:63385-63404 Msa1410560:CDS 20.0%
!!! TTTTATATATTGTTTGCATC+TGG - tig0023670:63527-63546 Msa1410560:CDS 20.0%
!! AATTAATATGAAATTTGGAG+GGG + tig0023670:63717-63736 None:intergenic 20.0%
! GTATAGCAGTAAAAAAAAAC+TGG - tig0023670:63088-63107 Msa1410560:CDS 25.0%
! AAATCATCAAAACACTTACA+AGG + tig0023670:63558-63577 None:intergenic 25.0%
!!! TGTAAGTGTTTTGATGATTT+TGG - tig0023670:63558-63577 Msa1410560:CDS 25.0%
! TTCATCCAAGAAAACAAATA+AGG + tig0023670:63586-63605 None:intergenic 25.0%
! ATTAATATGAAATTTGGAGG+GGG + tig0023670:63716-63735 None:intergenic 25.0%
! CAGATAGATTAATACTAAAC+AGG + tig0023670:63752-63771 None:intergenic 25.0%
! AAAATTAGATGAAAGTGAAG+AGG + tig0023670:63785-63804 None:intergenic 25.0%
! AATAAACCCAACTTAGAAAA+TGG - tig0023670:64206-64225 Msa1410560:intron 25.0%
!!! TGTTTAATATTTTCGGGTAA+TGG + tig0023670:64350-64369 None:intergenic 25.0%
!!! ACCTTGCTGTTTAATATTTT+CGG + tig0023670:64357-64376 None:intergenic 25.0%
! TTGCTTCAAAATTTCTTCTT+TGG - tig0023670:64379-64398 Msa1410560:intron 25.0%
!!! ATGATTACAGATGTTTTGAT+AGG - tig0023670:64738-64757 Msa1410560:intron 25.0%
!!! TGATTACAGATGTTTTGATA+GGG - tig0023670:64739-64758 Msa1410560:intron 25.0%
!! TCTTAGATACTATATTTTCC+AGG - tig0023670:64813-64832 Msa1410560:intron 25.0%
!! ATACTATATTTTCCAGGAAA+AGG - tig0023670:64819-64838 Msa1410560:intron 25.0%
!! TTTTCTTTATAGTGCTTTCT+TGG + tig0023670:65136-65155 None:intergenic 25.0%
! ATAAAGAAAAACCAGCTAAA+CGG - tig0023670:65146-65165 Msa1410560:intron 25.0%
TCGAAAATGTGACGAAAATA+GGG + tig0023670:62623-62642 None:intergenic 30.0%
ATCGAAAATGTGACGAAAAT+AGG + tig0023670:62624-62643 None:intergenic 30.0%
GAAAATGTAACCTAACTGAA+CGG + tig0023670:62670-62689 None:intergenic 30.0%
CCTGCAAACAAAATAAACAA+CGG + tig0023670:62788-62807 None:intergenic 30.0%
!!! CGTTGTTTATTTTGTTTGCA+GGG - tig0023670:62786-62805 Msa1410560:CDS 30.0%
!! ATTGTTGGTATTGGTTATCT+GGG - tig0023670:62859-62878 Msa1410560:CDS 30.0%
AAGGTAATGAAAAACTCACA+GGG + tig0023670:62917-62936 None:intergenic 30.0%
AAAGGTAATGAAAAACTCAC+AGG + tig0023670:62918-62937 None:intergenic 30.0%
!! AAAAAGTACCAAATGAGAAG+TGG + tig0023670:62954-62973 None:intergenic 30.0%
GGTTCAATGTGTTAGATTAA+AGG - tig0023670:63051-63070 Msa1410560:CDS 30.0%
TAAGAAACATTACAAACGTG+AGG + tig0023670:63122-63141 None:intergenic 30.0%
!! TGAACGTCTTTGTGTTTTAA+TGG - tig0023670:63153-63172 Msa1410560:CDS 30.0%
! ATTTTTGTTCTGTAAGTAGG+TGG - tig0023670:63246-63265 Msa1410560:CDS 30.0%
! TTTTTGTTCTGTAAGTAGGT+GGG - tig0023670:63247-63266 Msa1410560:CDS 30.0%
!! TGGTTCCTTATTTGTTTTCT+TGG - tig0023670:63578-63597 Msa1410560:CDS 30.0%
ACAATCTTCATTACATGCAA+CGG - tig0023670:63857-63876 Msa1410560:CDS 30.0%
CCATTGAAGAAAAAGTAACA+GGG + tig0023670:63900-63919 None:intergenic 30.0%
!!! CCTGTTACTTTTTCTTCAAT+GGG - tig0023670:63898-63917 Msa1410560:CDS 30.0%
TTTGCAGAGTCATTCTTTAA+AGG + tig0023670:64038-64057 None:intergenic 30.0%
TTTGCAGAGTCATTCTTTAA+AGG + tig0023670:64038-64057 None:intergenic 30.0%
! TTAATATCGGACAAAGCTTT+TGG + tig0023670:64308-64327 None:intergenic 30.0%
!!! CCTTGCTGTTTAATATTTTC+GGG + tig0023670:64356-64375 None:intergenic 30.0%
TTCTTGTTCATGATGAATCT+GGG - tig0023670:64555-64574 Msa1410560:intron 30.0%
! ATTTTACTAGTCCTAGTGAA+AGG - tig0023670:64762-64781 Msa1410560:intron 30.0%
AGAAGATTAACATCACAAGT+AGG - tig0023670:65031-65050 Msa1410560:intron 30.0%
! AGAAATCCAATGCATTTTCA+GGG - tig0023670:65227-65246 Msa1410560:CDS 30.0%
!! TTTATTTCTGCAAGAGTCTT+GGG + tig0023670:65253-65272 None:intergenic 30.0%
!!! TTTTATTTCTGCAAGAGTCT+TGG + tig0023670:65254-65273 None:intergenic 30.0%
AAAGAAGAGAAGAAAAAGTC+CGG - tig0023670:65271-65290 Msa1410560:CDS 30.0%
AGAATTTCATTCAGAGGTTT+GGG + tig0023670:65340-65359 None:intergenic 30.0%
! TCTTTGAGAATTTCATTCAG+AGG + tig0023670:65346-65365 None:intergenic 30.0%
TGAATGAAATTCTCAAAGAC+AGG - tig0023670:65347-65366 Msa1410560:five_prime_UTR 30.0%
AGCCAAGAAATAAACGCAAT+CGG + tig0023670:62501-62520 None:intergenic 35.0%
!!! CCGTTGTTTATTTTGTTTGC+AGG - tig0023670:62785-62804 Msa1410560:CDS 35.0%
!! GATTGTTGGTATTGGTTATC+TGG - tig0023670:62858-62877 Msa1410560:CDS 35.0%
AAATGAGAAGTGGAAATGCA+GGG + tig0023670:62944-62963 None:intergenic 35.0%
!!! TCTTTTGGACTTAATTTGCG+CGG - tig0023670:63011-63030 Msa1410560:CDS 35.0%
! TTTTGTTCTGTAAGTAGGTG+GGG - tig0023670:63248-63267 Msa1410560:CDS 35.0%
! TTCCATTGACAAGAAAGTAC+AGG + tig0023670:63320-63339 None:intergenic 35.0%
TTTGTCCAATTGTTGAGTCA+GGG + tig0023670:63491-63510 None:intergenic 35.0%
! TTTTGTCCAATTGTTGAGTC+AGG + tig0023670:63492-63511 None:intergenic 35.0%
! TTTGTAATTTTGTCAGCCTG+TGG - tig0023670:63803-63822 Msa1410560:CDS 35.0%
!!! CCCTGTTACTTTTTCTTCAA+TGG - tig0023670:63897-63916 Msa1410560:CDS 35.0%
CCCATTGAAGAAAAAGTAAC+AGG + tig0023670:63901-63920 None:intergenic 35.0%
!! TTCAATGGGTTTTGCAACAA+AGG - tig0023670:63912-63931 Msa1410560:CDS 35.0%
!! AGCAAATGCTCATTTTTGCA+TGG - tig0023670:63936-63955 Msa1410560:intron 35.0%
TTTGCAGTGTCAATCTTCAA+AGG + tig0023670:64086-64105 None:intergenic 35.0%
TTCACAGTGTCAATCTTCAA+AGG + tig0023670:64134-64153 None:intergenic 35.0%
TTCACAGTGTCAATCTTCAA+AGG + tig0023670:64134-64153 None:intergenic 35.0%
! AAGCCTTTGAAGAATGACAA+TGG - tig0023670:64176-64195 Msa1410560:intron 35.0%
CTTCCATTGTCATTCTTCAA+AGG + tig0023670:64182-64201 None:intergenic 35.0%
! GCAGTTCCATTTTCTAAGTT+GGG + tig0023670:64215-64234 None:intergenic 35.0%
! TGCAGTTCCATTTTCTAAGT+TGG + tig0023670:64216-64235 None:intergenic 35.0%
CTTAGAAAATGGAACTGCAT+CGG - tig0023670:64217-64236 Msa1410560:intron 35.0%
TTAGAAAATGGAACTGCATC+GGG - tig0023670:64218-64237 Msa1410560:intron 35.0%
TGGTTTAAATGTGTATCCCT+TGG + tig0023670:64272-64291 None:intergenic 35.0%
!!! CTTTTGGAGCAGATAAAGAT+TGG + tig0023670:64292-64311 None:intergenic 35.0%
CTTAGGCTGAGGTTTAATAT+CGG + tig0023670:64321-64340 None:intergenic 35.0%
CCCGAAAATATTAAACAGCA+AGG - tig0023670:64353-64372 Msa1410560:intron 35.0%
AACAAGAACATCAAATCCAG+GGG + tig0023670:64543-64562 None:intergenic 35.0%
GAACAAGAACATCAAATCCA+GGG + tig0023670:64544-64563 None:intergenic 35.0%
TGAACAAGAACATCAAATCC+AGG + tig0023670:64545-64564 None:intergenic 35.0%
GTTCTTGTTCATGATGAATC+TGG - tig0023670:64554-64573 Msa1410560:intron 35.0%
ATATTTGCCAGTGCTTGATA+TGG - tig0023670:64607-64626 Msa1410560:intron 35.0%
AGTATTGCTCATTCAGTTCA+TGG + tig0023670:64637-64656 None:intergenic 35.0%
TGAACTGAATGAGCAATACT+TGG - tig0023670:64637-64656 Msa1410560:intron 35.0%
GAACTGAATGAGCAATACTT+GGG - tig0023670:64638-64657 Msa1410560:intron 35.0%
AACTGAATGAGCAATACTTG+GGG - tig0023670:64639-64658 Msa1410560:intron 35.0%
CGCTGATATTCTTTATGAAC+AGG - tig0023670:64706-64725 Msa1410560:intron 35.0%
! CTTCTTTGATGGTTCAAAAC+CGG - tig0023670:64969-64988 Msa1410560:intron 35.0%
! TTCTTTGATGGTTCAAAACC+GGG - tig0023670:64970-64989 Msa1410560:intron 35.0%
TTTCAATTGCCAACAAGCAA+AGG - tig0023670:65083-65102 Msa1410560:intron 35.0%
! GATTCTTTAGAAGGAGGAAA+TGG + tig0023670:65172-65191 None:intergenic 35.0%
! CAGAAATCCAATGCATTTTC+AGG - tig0023670:65226-65245 Msa1410560:CDS 35.0%
TTCACAATGTGAACTTTCAC+CGG + tig0023670:65293-65312 None:intergenic 35.0%
GAGAATTTCATTCAGAGGTT+TGG + tig0023670:65341-65360 None:intergenic 35.0%
! CACCGATTGCGTTTATTTCT+TGG - tig0023670:62496-62515 Msa1410560:CDS 40.0%
TTGAACCTTCTTGCAAGTGA+GGG + tig0023670:62528-62547 None:intergenic 40.0%
ATTGAACCTTCTTGCAAGTG+AGG + tig0023670:62529-62548 None:intergenic 40.0%
ATTGAATTCGCGATTGCGAA+GGG + tig0023670:62559-62578 None:intergenic 40.0%
AATTGAATTCGCGATTGCGA+AGG + tig0023670:62560-62579 None:intergenic 40.0%
!! GCTTTTGTTTCCGTTCAGTT+AGG - tig0023670:62657-62676 Msa1410560:CDS 40.0%
AGGGTGTAGAATGTGAGTAT+AGG - tig0023670:62805-62824 Msa1410560:CDS 40.0%
AACCAATACCAACAATCCCT+CGG + tig0023670:62855-62874 None:intergenic 40.0%
CAAATGAGAAGTGGAAATGC+AGG + tig0023670:62945-62964 None:intergenic 40.0%
CTGCATTTCCACTTCTCATT+TGG - tig0023670:62943-62962 Msa1410560:CDS 40.0%
!!! TGGTACTTTTTTCGCGTATG+TGG - tig0023670:62963-62982 Msa1410560:CDS 40.0%
!!! GGTACTTTTTTCGCGTATGT+GGG - tig0023670:62964-62983 Msa1410560:CDS 40.0%
!! TTAATTTGCGCGGTTAGGTT+AGG - tig0023670:63021-63040 Msa1410560:CDS 40.0%
CATTACAAACGTGAGGACTA+AGG + tig0023670:63115-63134 None:intergenic 40.0%
! GCTGAGATGCATTTTACCTA+TGG - tig0023670:63175-63194 Msa1410560:CDS 40.0%
! GAGATGCATTTTACCTATGG+TGG - tig0023670:63178-63197 Msa1410560:CDS 40.0%
!!! AGACACTTTTTCCATCACAC+AGG + tig0023670:63205-63224 None:intergenic 40.0%
TGCCTGTACTTTCTTGTCAA+TGG - tig0023670:63315-63334 Msa1410560:CDS 40.0%
TTGTCCAATTGTTGAGTCAG+GGG + tig0023670:63490-63509 None:intergenic 40.0%
! TAATTTTGTCAGCCTGTGGA+TGG - tig0023670:63807-63826 Msa1410560:CDS 40.0%
GCATGTAATGAAGATTGTGC+AGG + tig0023670:63855-63874 None:intergenic 40.0%
TTTCCAGCGTCATTCTTCAA+AGG + tig0023670:63990-64009 None:intergenic 40.0%
TTTGCAGCGTCATTCTTCAA+AGG + tig0023670:64014-64033 None:intergenic 40.0%
! ACTGCAAAGCCTTTGAAGAA+TGG - tig0023670:64098-64117 Msa1410560:intron 40.0%
TTTGCAGAGCCATTCTTCAA+AGG + tig0023670:64110-64129 None:intergenic 40.0%
TAAATGTGTATCCCTTGGTG+TGG + tig0023670:64267-64286 None:intergenic 40.0%
CGATATTAAACCTCAGCCTA+AGG - tig0023670:64319-64338 Msa1410560:intron 40.0%
ATAAAGAAGCTGCTGTGACT+CGG - tig0023670:64405-64424 Msa1410560:intron 40.0%
AAATAGTCAAGTAGAGCCTG+AGG - tig0023670:64508-64527 Msa1410560:intron 40.0%
CCACAAACTTTCCTTTCACT+AGG + tig0023670:64776-64795 None:intergenic 40.0%
CCTAGTGAAAGGAAAGTTTG+TGG - tig0023670:64773-64792 Msa1410560:intron 40.0%
! GTATCTAAGACCATCTCTCT+GGG + tig0023670:64803-64822 None:intergenic 40.0%
! AGTATCTAAGACCATCTCTC+TGG + tig0023670:64804-64823 None:intergenic 40.0%
ACATGAGTCGTCTTCTTTGA+TGG - tig0023670:64958-64977 Msa1410560:intron 40.0%
CCTGAATAACCTTTGCTTGT+TGG + tig0023670:65095-65114 None:intergenic 40.0%
CCAACAAGCAAAGGTTATTC+AGG - tig0023670:65092-65111 Msa1410560:intron 40.0%
! TTCCTCCTTCTAAAGAATCC+AGG - tig0023670:65173-65192 Msa1410560:intron 40.0%
! TTCCTGGATTCTTTAGAAGG+AGG + tig0023670:65178-65197 None:intergenic 40.0%
GGTTTCCTGGATTCTTTAGA+AGG + tig0023670:65181-65200 None:intergenic 40.0%
! TTGCTTCACAATTGGTTTCC+TGG + tig0023670:65194-65213 None:intergenic 40.0%
! GATCTCTGTTGCTTCACAAT+TGG + tig0023670:65202-65221 None:intergenic 40.0%
TGTTCGTTACACTGAGAGAG+AGG + tig0023670:62451-62470 None:intergenic 45.0%
CTCTCTCAGTGTAACGAACA+TGG - tig0023670:62451-62470 Msa1410560:CDS 45.0%
TGAACCTTCTTGCAAGTGAG+GGG + tig0023670:62527-62546 None:intergenic 45.0%
ACCAATACCAACAATCCCTC+GGG + tig0023670:62854-62873 None:intergenic 45.0%
! GGGTGTCTAAAAGCACAAGT+TGG + tig0023670:62897-62916 None:intergenic 45.0%
!! TGGACTTAATTTGCGCGGTT+AGG - tig0023670:63016-63035 Msa1410560:CDS 45.0%
! GCGGTTAGGTTAGGTTTTTG+TGG - tig0023670:63030-63049 Msa1410560:CDS 45.0%
TGTCCAATTGTTGAGTCAGG+GGG + tig0023670:63489-63508 None:intergenic 45.0%
ATGAAATTTGGAGGGGGAGT+GGG + tig0023670:63710-63729 None:intergenic 45.0%
TATGAAATTTGGAGGGGGAG+TGG + tig0023670:63711-63730 None:intergenic 45.0%
GAAGATTGTGCAGGTTCAGA+TGG + tig0023670:63846-63865 None:intergenic 45.0%
TGCAACGGCAAACAAGACAA+TGG - tig0023670:63872-63891 Msa1410560:CDS 45.0%
! AAGCCTTTGAAGAATGACGC+TGG - tig0023670:63984-64003 Msa1410560:intron 45.0%
GAACTCTGCTCAGTGAATGA+AGG + tig0023670:64476-64495 None:intergenic 45.0%
ATTCACTGAGCAGAGTTCAG+AGG - tig0023670:64478-64497 Msa1410560:intron 45.0%
AAGAACATCAAATCCAGGGG+AGG + tig0023670:64540-64559 None:intergenic 45.0%
TGATGAATCTGGGAACAACC+TGG - tig0023670:64565-64584 Msa1410560:intron 45.0%
GATGAATCTGGGAACAACCT+GGG - tig0023670:64566-64585 Msa1410560:intron 45.0%
TGGTCATCCATATCAAGCAC+TGG + tig0023670:64617-64636 None:intergenic 45.0%
GATTACGACACTATGTGCTC+AGG - tig0023670:64683-64702 Msa1410560:intron 45.0%
TTGTGGTTATCCCAGAGAGA+TGG - tig0023670:64790-64809 Msa1410560:intron 45.0%
! GGACATTCGAATCCTTTTCC+TGG + tig0023670:64834-64853 None:intergenic 45.0%
! TCGAATGTCCACTTCTGAGA+TGG - tig0023670:64844-64863 Msa1410560:CDS 45.0%
CTTCTTAAGAGACCTGTGTC+AGG + tig0023670:64938-64957 None:intergenic 45.0%
TGATGGTTCAAAACCGGGAA+AGG - tig0023670:64975-64994 Msa1410560:intron 45.0%
!! AAAACCGGGAAAGGCATCAA+AGG - tig0023670:64984-65003 Msa1410560:intron 45.0%
AGGCATCAAAGGCAAGACAT+TGG - tig0023670:64995-65014 Msa1410560:intron 45.0%
AAAGGCAAGACATTGGTCAG+CGG - tig0023670:65002-65021 Msa1410560:intron 45.0%
!! AAAAAAATTAATATGAAATT+TGG + tig0023670:63722-63741 None:intergenic 5.0%
TTCACCCCTCACTTGCAAGA+AGG - tig0023670:62520-62539 Msa1410560:CDS 50.0%
ATAGGCACCATGAGATTGCG+AGG - tig0023670:62823-62842 Msa1410560:CDS 50.0%
GGTTAAGCCTCGCAATCTCA+TGG + tig0023670:62833-62852 None:intergenic 50.0%
ACCCGAGGGATTGTTGGTAT+TGG - tig0023670:62850-62869 Msa1410560:CDS 50.0%
AGTGGAAATGCAGGGCACAA+AGG + tig0023670:62936-62955 None:intergenic 50.0%
GTTCTGTAAGTAGGTGGGGA+TGG - tig0023670:63252-63271 Msa1410560:CDS 50.0%
TGTTGAGTCAGGGGGACAAT+GGG + tig0023670:63481-63500 None:intergenic 50.0%
TTGTTGAGTCAGGGGGACAA+TGG + tig0023670:63482-63501 None:intergenic 50.0%
TGTCCCCCTGACTCAACAAT+TGG - tig0023670:63483-63502 Msa1410560:CDS 50.0%
TGAAATTTGGAGGGGGAGTG+GGG + tig0023670:63709-63728 None:intergenic 50.0%
ACAGTGAGCGAGCTATCATC+AGG + tig0023670:63963-63982 None:intergenic 50.0%
TGTAGCATCGTCCACACCAA+GGG - tig0023670:64253-64272 Msa1410560:intron 50.0%
AATGGTAGCACCTTAGGCTG+AGG + tig0023670:64332-64351 None:intergenic 50.0%
! TCGGGTAATGGTAGCACCTT+AGG + tig0023670:64338-64357 None:intergenic 50.0%
GACTCTCCATTACCAGACGA+CGG - tig0023670:64431-64450 Msa1410560:intron 50.0%
GTCAAGTAGAGCCTGAGGAA+CGG - tig0023670:64513-64532 Msa1410560:intron 50.0%
TGGGAACAACCTGGGTTATG+AGG - tig0023670:64574-64593 Msa1410560:intron 50.0%
GGGAACAACCTGGGTTATGA+GGG - tig0023670:64575-64594 Msa1410560:intron 50.0%
AACAACCTGGGTTATGAGGG+CGG - tig0023670:64578-64597 Msa1410560:intron 50.0%
ACAAGCAGCCATCTCAGAAG+TGG + tig0023670:64855-64874 None:intergenic 50.0%
TCACCATCTGAGAAGACGCA+GGG - tig0023670:64898-64917 Msa1410560:CDS 50.0%
GTCAATAGTCCTCCTGACAC+AGG - tig0023670:64923-64942 Msa1410560:CDS 50.0%
CTTAAGAGACCTGTGTCAGG+AGG + tig0023670:64935-64954 None:intergenic 50.0%
CTTGCCTTTGATGCCTTTCC+CGG + tig0023670:64991-65010 None:intergenic 50.0%
TCAGGCCTTACCAGCAAAGT+AGG - tig0023670:65110-65129 Msa1410560:intron 50.0%
CTTGGCCTACTTTGCTGGTA+AGG + tig0023670:65118-65137 None:intergenic 50.0%
GCTTTCTTGGCCTACTTTGC+TGG + tig0023670:65123-65142 None:intergenic 50.0%
CTTGGGCCCTGAAAATGCAT+TGG + tig0023670:65236-65255 None:intergenic 50.0%
CATTGTGAAAGCTCGTCAGC+TGG - tig0023670:65304-65323 Msa1410560:five_prime_UTR 50.0%
! CATTCAGAGGTTTGGGATCC+TGG + tig0023670:65333-65352 None:intergenic 50.0%
AGATTGCGAGGCTTAACCCG+AGG - tig0023670:62835-62854 Msa1410560:CDS 55.0%
GATTGCGAGGCTTAACCCGA+GGG - tig0023670:62836-62855 Msa1410560:CDS 55.0%
GGCTTAACCCGAGGGATTGT+TGG - tig0023670:62844-62863 Msa1410560:CDS 55.0%
CCATCACACAGGTCCACCAT+AGG + tig0023670:63194-63213 None:intergenic 55.0%
!! CCTATGGTGGACCTGTGTGA+TGG - tig0023670:63191-63210 Msa1410560:CDS 55.0%
AAGTAGGTGGGGATGGTGCA+AGG - tig0023670:63259-63278 Msa1410560:CDS 55.0%
ACTCCAGTGTGTCCATCCAC+AGG + tig0023670:63822-63841 None:intergenic 55.0%
GTGTAGCATCGTCCACACCA+AGG - tig0023670:64252-64271 Msa1410560:intron 55.0%
TTATGAGCAACGCCGTCGTC+TGG + tig0023670:64446-64465 None:intergenic 55.0%
GTCACCATCTGAGAAGACGC+AGG - tig0023670:64897-64916 Msa1410560:CDS 55.0%
GGAGGAAATGGCCGTTTAGC+TGG + tig0023670:65160-65179 None:intergenic 55.0%
! AAGCTCGTCAGCTGGTTTCC+AGG - tig0023670:65312-65331 Msa1410560:five_prime_UTR 55.0%
CAGCCTGTGGATGGACACAC+TGG - tig0023670:63816-63835 Msa1410560:CDS 60.0%
GCAACGCCGTCGTCTGGTAA+TGG + tig0023670:64440-64459 None:intergenic 60.0%
CAGAACCGCCCTCATAACCC+AGG + tig0023670:64586-64605 None:intergenic 60.0%
CCTCCCTGCGTCTTCTCAGA+TGG + tig0023670:64904-64923 None:intergenic 60.0%
CCATCTGAGAAGACGCAGGG+AGG - tig0023670:64901-64920 Msa1410560:CDS 60.0%
CCAGGGGAGGACCGTTCCTC+AGG + tig0023670:64527-64546 None:intergenic 70.0%
CCTGAGGAACGGTCCTCCCC+TGG - tig0023670:64524-64543 Msa1410560:intron 70.0%
Chromosome Type Strat End Strand Name
tig0023670 gene 62379 65381 62379 ID=Msa1410560;Name=Msa1410560
tig0023670 mRNA 62379 65381 62379 ID=Msa1410560-mRNA-1;Parent=Msa1410560;Name=Msa1410560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=91|1|0.66|1|1|1|3|0|581
tig0023670 exon 62379 63941 62379 ID=Msa1410560-mRNA-1:exon:26624;Parent=Msa1410560-mRNA-1
tig0023670 exon 64843 64953 64843 ID=Msa1410560-mRNA-1:exon:26623;Parent=Msa1410560-mRNA-1
tig0023670 exon 65219 65381 65219 ID=Msa1410560-mRNA-1:exon:26622;Parent=Msa1410560-mRNA-1
tig0023670 five_prime_UTR 65291 65381 65291 ID=Msa1410560-mRNA-1:five_prime_utr;Parent=Msa1410560-mRNA-1
tig0023670 CDS 65219 65290 65219 ID=Msa1410560-mRNA-1:cds;Parent=Msa1410560-mRNA-1
tig0023670 CDS 64843 64953 64843 ID=Msa1410560-mRNA-1:cds;Parent=Msa1410560-mRNA-1
tig0023670 CDS 62379 63941 62379 ID=Msa1410560-mRNA-1:cds;Parent=Msa1410560-mRNA-1
Gene Sequence

>Msa1410560

ATGGACGAAGATTTTCAAAAGCGTAACACCGATTGCGTTTATTTCTTGGCTTCACCCCTCACTTGCAAGAAGGGTGTAGAATGTGAGTATAGGCACCATGAGATTGCGAGGCTTAACCCGAGGGATTGTTGGTATTGGTTATCTGGGAATTGTCTTAATCCAACTTGTGCTTTTAGACACCCTCCTGTGGATGGACACACTGGAGTGCCATCTGAACCTGCACAATCTTCATTACATGCAACGGCAAACAAGACAATGGTTCCCTGTTACTTTTTCTTCAATGGGTTTTGCAACAAAGGTAGCAAATGCTCATTTTTGCATGGACCTGATGATAGCTCGCTCACTGTAAAGCCTTTGAAGAATGACGCTGGAAAGCCTTTGAAGAATGACGCTGCAAAGCCTTTAAAGAATGACTCTGCAAAGCCTTTAAAGAATGACTCTGCAAAACCTTTGAAGATTGACACTGCAAAGCCTTTGAAGAATGGCTCTGCAAAACCTTTGAAGATTGACACTGTGAAGCCTTTGAAGATTGACACTGTGAAGCCTTTGAAGAATGACAATGGAAGCATTAATAAACCCAACTTAGAAAATGGAACTGCATCGGGAAATAAAACAAGTGTAGCATCGTCCACACCAAGGGATACACATTTAAACCAATCTTTATCTGCTCCAAAAGCTTTGTCCGATATTAAACCTCAGCCTAAGGTGCTACCATTACCCGAAAATATTAAACAGCAAGGTGATTGCTTCAAAATTTCTTCTTTGGACTATAAAGAAGCTGCTGTGACTCGGTCAGACTCTCCATTACCAGACGACGGCGTTGCTCATAACATGTCTCCTTCATTCACTGAGCAGAGTTCAGAGGAGCAAGAAAATAGTCAAGTAGAGCCTGAGGAACGGTCCTCCCCTGGATTTGATGTTCTTGTTCATGATGAATCTGGGAACAACCTGGGTTATGAGGGCGGTTCTGAATATTTGCCAGTGCTTGATATGGATGACCATGAACTGAATGAGCAATACTTGGGGTATGAATTTAAAAACACAAATGATTACGACACTATGTGCTCAGGCGCTGATATTCTTTATGAACAGGAAACATATGATGATTACAGATGTTTTGATAGGGATTTTACTAGTCCTAGTGAAAGGAAAGTTTGTGGTTATCCCAGAGAGATGGTCTTAGATACTATATTTTCCAGGAAAAGGATTCGAATGTCCACTTCTGAGATGGCTGCTTGTGACTACTCTGACTTAGATCTACGTCACCATCTGAGAAGACGCAGGGAGGTCAATAGTCCTCCTGACACAGGTCTCTTAAGAAGACATGAGTCGTCTTCTTTGATGGTTCAAAACCGGGAAAGGCATCAAAGGCAAGACATTGGTCAGCGGCAAAGTAGAAGATTAACATCACAAGTAGGATTTAGTTCAATCAGAGAAGTTGAAGATCTTTCAATTGCCAACAAGCAAAGGTTATTCAGGCCTTACCAGCAAAGTAGGCCAAGAAAGCACTATAAAGAAAAACCAGCTAAACGGCCATTTCCTCCTTCTAAAGAATCCAGGAAACCAATTGTGAAGCAACAGAGATCTATTCAGAAATCCAATGCATTTTCAGGGCCCAAGACTCTTGCAGAAATAAAAGAAGAGAAGAAAAAGTCCGGTGAAAGTTCACATTGTGAAAGCTCGTCAGCTGGTTTCCAGGATCCCAAACCTCTGAATGAAATTCTCAAAGACAGGACCATAGATTGA

Protein sequence

>Msa1410560

MDEDFQKRNTDCVYFLASPLTCKKGVECEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPVDGHTGVPSEPAQSSLHATANKTMVPCYFFFNGFCNKGSKCSFLHGPDDSSLTVKPLKNDAGKPLKNDAAKPLKNDSAKPLKNDSAKPLKIDTAKPLKNGSAKPLKIDTVKPLKIDTVKPLKNDNGSINKPNLENGTASGNKTSVASSTPRDTHLNQSLSAPKALSDIKPQPKVLPLPENIKQQGDCFKISSLDYKEAAVTRSDSPLPDDGVAHNMSPSFTEQSSEEQENSQVEPEERSSPGFDVLVHDESGNNLGYEGGSEYLPVLDMDDHELNEQYLGYEFKNTNDYDTMCSGADILYEQETYDDYRCFDRDFTSPSERKVCGYPREMVLDTIFSRKRIRMSTSEMAACDYSDLDLRHHLRRRREVNSPPDTGLLRRHESSSLMVQNRERHQRQDIGQRQSRRLTSQVGFSSIREVEDLSIANKQRLFRPYQQSRPRKHYKEKPAKRPFPPSKESRKPIVKQQRSIQKSNAFSGPKTLAEIKEEKKKSGESSHCESSSAGFQDPKPLNEILKDRTID*