AlfalfaGEDB | Msa1411630

M. sativa cultivar zhongmu-4 / Msa1411630

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1411630	sp\|Q9LT81\|C3H39_ARATH	44.753	324	131	10	42	326	59	373	1.40e-75	240

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1411630	A0A396IEH0	94.355	248	13	1	1	247	1	248	1.45e-173	490

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TFs/TRs:

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Gene ID	Type	Classification
Msa1411630	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1411630	MtrunA17_Chr4g0063401	94.355	248	13	1	1	247	1	248	2.79e-177	490
Msa1411630	MtrunA17_Chr4g0063361	64.173	254	70	5	1	246	1	241	1.12e-115	334
Msa1411630	MtrunA17_Chr4g0063391	56.800	250	66	7	1	248	1	210	3.41e-87	261
Msa1411630	MtrunA17_Chr4g0063371	47.130	331	68	9	1	325	1	230	5.59e-75	230
Msa1411630	MtrunA17_Chr3g0098251	57.635	203	54	5	44	246	7	177	9.51e-74	226
Msa1411630	MtrunA17_Chr8g0360671	54.777	157	41	4	99	255	41	167	2.28e-47	157
Msa1411630	MtrunA17_Chr8g0366501	34.106	302	140	10	71	326	86	374	4.97e-41	147
Msa1411630	MtrunA17_Chr4g0063411	89.024	82	9	0	245	326	9	90	1.98e-33	118

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1411630	AT3G19360.1	44.753	324	131	10	42	326	59	373	1.42e-76	240
Msa1411630	AT3G19360.2	44.753	324	131	10	42	326	59	373	1.42e-76	240
Msa1411630	AT1G32360.1	32.550	298	159	8	71	326	85	382	1.93e-36	135
Msa1411630	AT2G35430.1	30.392	204	108	8	138	326	66	250	2.50e-16	77.8
Msa1411630	AT2G35430.1	35.849	106	46	4	77	168	71	168	2.50e-11	63.5

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Find 101 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCAATTACGCTCAC+GGG	0.487194	tig0023824:-40085	Msa1411630:CDS
AAAGTGACAGGTCTCCCCAA+AGG	0.626382	tig0023824:+39668	None:intergenic
AAATCAGAGTTACAAGCTCC+TGG	0.561857	tig0023824:-37763	Msa1411630:intron
AAATTAGGCAAGAAGATCAA+TGG	0.564267	tig0023824:-37565	Msa1411630:CDS
AAATTGCAATTACGCTCACG+GGG	0.722741	tig0023824:-40084	Msa1411630:CDS
AACGGCTTCAGATGGAGACA+AGG	0.650858	tig0023824:-40001	Msa1411630:CDS
AACGGTGAGGAATGTCCTTA+TGG	0.402090	tig0023824:-39909	Msa1411630:CDS
AAGAAGATCAATGGTATTTA+TGG	0.269407	tig0023824:-37556	Msa1411630:CDS
AAGCTACACTTATCACCATA+AGG	0.515098	tig0023824:+39894	None:intergenic
AAGGCAGCCACCACCAAATT+GGG	0.448398	tig0023824:-39982	Msa1411630:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTATGATGATTGTGTAGA+AGG	-	tig0023824:38380-38399	Msa1411630:intron	30.0%
TGTTGTGTATGATATTTCCA+TGG	-	tig0023824:38461-38480	Msa1411630:intron	30.0%
ATATCATACACAACAACGAT+AGG	+	tig0023824:38554-38573	None:intergenic	30.0%
TCTTAGTGTTGTCAAATTCA+TGG	-	tig0023824:38628-38647	Msa1411630:intron	30.0%
TTGTTAAATAGCGACTATAG+CGG	+	tig0023824:38957-38976	None:intergenic	30.0%
AATCAACAAATGTAAAGCTG+TGG	+	tig0023824:39146-39165	None:intergenic	30.0%
ATGATACCAAGTACGAATAT+CGG	+	tig0023824:39591-39610	None:intergenic	30.0%
AAAGATAAAAGCAGTCACTT+CGG	+	tig0023824:39655-39674	None:intergenic	30.0%
TGTCCGACTCATAAAAAAAT+TGG	-	tig0023824:39809-39828	Msa1411630:CDS	30.0%
AATATAAAACCTCGCAAATG+AGG	+	tig0023824:39844-39863	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023824	gene	37537	40390	37537	ID=Msa1411630;Name=Msa1411630
tig0023824	mRNA	37537	40390	37537	ID=Msa1411630-mRNA-1;Parent=Msa1411630;Name=Msa1411630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|1\|1\|2\|0\|326
tig0023824	exon	39652	40390	39652	ID=Msa1411630-mRNA-1:exon:20227;Parent=Msa1411630-mRNA-1
tig0023824	exon	37537	37778	37537	ID=Msa1411630-mRNA-1:exon:20226;Parent=Msa1411630-mRNA-1
tig0023824	CDS	39652	40390	39652	ID=Msa1411630-mRNA-1:cds;Parent=Msa1411630-mRNA-1
tig0023824	CDS	37537	37778	37537	ID=Msa1411630-mRNA-1:cds;Parent=Msa1411630-mRNA-1

Gene Sequence

>Msa1411630

ATGAATTTTCCAGACGATATTCCAACCTGTAGGATGTCACCACCGCAGTTTGCTTCATCCAACAACGATATCATTGAAGTGAGGCCTCAAATCCCAATCAATAACGATCACTCTGAGCCACATTCCTTCAAGAGGGCGAGAATTGCTGATAACAATCCCCCTAGTGGATTGATATGCCCTCCTTCAAGGATGATTCAGCCTCCACCAAACCGAGGAACAAGCAGCATTTTTTTCAAGACCCGAATCTGCACTAAGTTCAGGTTTGGTACTTGTAGAAATGGCGAAAATTGCAATTACGCTCACGGGGCTGATGAGATAAGGCAGCCACCGCGGAATTGGCAGGAGCTAGTTGATCCTCGCAACGACGAACGGCTTCAGATGGAGACAAGGCAGCCACCACCAAATTGGGATGAAGATCAAAAAATCATTCACAAGATGAAGCTGTGCAAGAAGTATTACAACGGTGAGGAATGTCCTTATGGTGATAAGTGTAGCTTTCTTCATGAGGATCCTGCTAGGTTTAGGGATGATTCTTGGAAAACAAGAGAGTGTTCTGCAATAAGCATTGGAAATATTGGTTCTCCAAAGTCTTTTGGGGATGGTTCTAACAATTTGGAAGGCATTAGGGCTGTGAACAAGCCAGCAAGGAGCGCTTATTGGAAGACAAAGCTGTGTCAATGGCAGCATACAGGGAGCTGTCCCTTTGGGGAGACCTGTCACTTTGCTCATGGAGAAGCAGAGTTACAAGCTCCTGGTGGAGGCATTGAAGCTGAAGCTGCAGTTGCCATAGTAAGCTCAACAAAAGCTATCATTCCAACTTCACCAAAAGCCTCAACAGGTGTTGCCAATGATTCTACTCCTACCTTCACCACAAGTCTACTCATGACAAAGGAAGAGGAGCAGGATAAGAAGAAGCACTTACTTAGGTTGAAATTAGGCAAGAAGATCAATGGTATTTATGGTGATTGGATTGATGATTGA

Protein sequence

>Msa1411630

MNFPDDIPTCRMSPPQFASSNNDIIEVRPQIPINNDHSEPHSFKRARIADNNPPSGLICPPSRMIQPPPNRGTSSIFFKTRICTKFRFGTCRNGENCNYAHGADEIRQPPRNWQELVDPRNDERLQMETRQPPPNWDEDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPARFRDDSWKTRECSAISIGNIGSPKSFGDGSNNLEGIRAVNKPARSAYWKTKLCQWQHTGSCPFGETCHFAHGEAELQAPGGGIEAEAAVAIVSSTKAIIPTSPKASTGVANDSTPTFTTSLLMTKEEEQDKKKHLLRLKLGKKINGIYGDWIDD*