AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1411650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411650 MtrunA17_Chr4g0063371 58.952 229 40 4 1 185 12 230 3.46e-81 241
Msa1411650 MtrunA17_Chr4g0063391 58.883 197 29 3 1 145 12 208 1.66e-70 214
Msa1411650 MtrunA17_Chr4g0063361 34.894 235 68 4 1 150 12 246 1.75e-35 125
Msa1411650 MtrunA17_Chr4g0063401 38.136 236 53 6 1 144 12 246 2.68e-35 124
Msa1411650 MtrunA17_Chr3g0098251 36.994 173 50 4 20 144 15 176 6.80e-25 96.7
Msa1411650 MtrunA17_Chr8g0360671 35.664 143 55 2 16 123 11 151 9.76e-19 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411650 AT3G19360.1 30.153 262 74 7 36 189 116 376 5.80e-23 95.1
Msa1411650 AT3G19360.2 30.153 262 74 7 36 189 116 376 5.80e-23 95.1

Find 49 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCTAGCTTCTGCAAATT+TGG 0.182814 tig0023824:+63240 None:intergenic
CCAAGTATACGCTTCTTCTT+AGG 0.280007 tig0023824:+62519 None:intergenic
AGCCAGATCAATCGTATTTA+CGG 0.289560 tig0023824:-62486 Msa1411650:CDS
CTCTGGAAACACACCTCATT+TGG 0.330065 tig0023824:-62432 Msa1411650:CDS
AATTTACAGTTATCTCTATA+TGG 0.333739 tig0023824:+63114 None:intergenic
TCAATCGTATTTACGGTGAT+TGG 0.347052 tig0023824:-62479 Msa1411650:CDS
CATACCGGATATTGTTCCTT+TGG 0.350886 tig0023824:-62944 Msa1411650:CDS
CCTAAGAAGAAGCGTATACT+TGG 0.373101 tig0023824:-62519 Msa1411650:CDS
TGAACAATAATGACTTCAAA+AGG 0.385432 tig0023824:-63470 Msa1411650:CDS
AGACTAAGCTGTGTCGCAAT+TGG 0.427484 tig0023824:-62970 Msa1411650:CDS
AGCAAGCAAGGGGCACTTAT+CGG 0.435970 tig0023824:-62994 Msa1411650:CDS
AGATTTGGTGCTTGTAGAAA+CGG 0.437088 tig0023824:-63312 Msa1411650:CDS
ACGGTGATTGGATTGATGAT+TGG 0.443878 tig0023824:-62467 Msa1411650:CDS
CAACGAAGATCAACTGCAGC+TGG 0.445811 tig0023824:-63211 Msa1411650:CDS
TCCTTGTTTATAGGCAGAGC+AGG 0.451853 tig0023824:-62582 Msa1411650:intron
CATTCCAAAGGAACAATATC+CGG 0.460353 tig0023824:+62940 None:intergenic
CTAATAATTTGGAAGGCAGC+AGG 0.471854 tig0023824:-63027 Msa1411650:intron
AGCTTCTGCAAATTTGGTGG+TGG 0.473172 tig0023824:+63246 None:intergenic
CACCGTAAATACGATTGATC+TGG 0.481235 tig0023824:+62484 None:intergenic
GGGCTGTGAACAAGCAAGCA+AGG 0.482646 tig0023824:-63006 Msa1411650:CDS
ATGTACCCGACTTGTGGAAA+AGG 0.484051 tig0023824:-62553 Msa1411650:CDS
TGTGCAAGAAGTATTGCAAT+GGG 0.488339 tig0023824:-63146 Msa1411650:CDS
CTCTTTGCTCATGATGAAGA+AGG 0.508905 tig0023824:-62911 Msa1411650:intron
CCTAGCTTCTGCAAATTTGG+TGG 0.512657 tig0023824:+63243 None:intergenic
GGCTGTGAACAAGCAAGCAA+GGG 0.513346 tig0023824:-63005 Msa1411650:CDS
TTCTGAATGTACCCGACTTG+TGG 0.526232 tig0023824:-62559 Msa1411650:CDS
TGCAGTTGATCTTCGTTGCA+CGG 0.530704 tig0023824:+63216 None:intergenic
ATCATGGAGCTGAAGAGATA+AGG 0.532117 tig0023824:-63272 Msa1411650:CDS
AGGAGGGCATATCAATGCAT+TGG 0.539478 tig0023824:+63431 None:intergenic
GAACAATAATGACTTCAAAA+GGG 0.552156 tig0023824:-63469 Msa1411650:CDS
TGTCGCAATTGGAAGCATAC+CGG 0.563682 tig0023824:-62959 Msa1411650:CDS
CTGTGCAAGAAGTATTGCAA+TGG 0.572239 tig0023824:-63147 Msa1411650:CDS
TGTTTCCAGAGCATAACAAA+AGG 0.581785 tig0023824:+62444 None:intergenic
AATAATGACTTCAAAAGGGA+AGG 0.582018 tig0023824:-63465 Msa1411650:CDS
GAAGAATGCTTATCCAAATG+AGG 0.582982 tig0023824:+62419 None:intergenic
TAATAATTTGGAAGGCAGCA+GGG 0.584634 tig0023824:-63026 Msa1411650:intron
CACATCAATGCATCAGAAGG+AGG 0.586467 tig0023824:+63414 None:intergenic
TTGTTCAATGAAGTGAATTG+CGG 0.591801 tig0023824:+63486 None:intergenic
AACGAAGATCAACTGCAGCT+GGG 0.593604 tig0023824:-63210 Msa1411650:CDS
CCACCAAATTTGCAGAAGCT+AGG 0.604649 tig0023824:-63243 Msa1411650:CDS
AAAGAGACAGTTCATTCCAA+AGG 0.613697 tig0023824:+62928 None:intergenic
GGTCACATCAATGCATCAGA+AGG 0.614755 tig0023824:+63411 None:intergenic
ACATCAATGCATCAGAAGGA+GGG 0.627126 tig0023824:+63415 None:intergenic
CTAAGAAGAAGCGTATACTT+GGG 0.628540 tig0023824:-62518 Msa1411650:CDS
GCTGTGAACAAGCAAGCAAG+GGG 0.637136 tig0023824:-63004 Msa1411650:CDS
CCAAATTTGCAGAAGCTAGG+TGG 0.641093 tig0023824:-63240 Msa1411650:CDS
CAAGAAGTATTGCAATGGGG+AGG 0.655957 tig0023824:-63142 Msa1411650:CDS
TTCAATGAAGTGAATTGCGG+CGG 0.670436 tig0023824:+63489 None:intergenic
GTGCAAGAAGTATTGCAATG+GGG 0.763140 tig0023824:-63145 Msa1411650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATGAAAAAATCATACAA+AGG - tig0023824:62747-62766 Msa1411650:intron 20.0%
!! AATTTACAGTTATCTCTATA+TGG + tig0023824:62812-62831 None:intergenic 20.0%
!!! CAATAACTCATTTTGATTAT+TGG - tig0023824:63038-63057 Msa1411650:intron 20.0%
!! AAGATGAAAAAATCATACAA+AGG - tig0023824:62747-62766 Msa1411650:intron 20.0%
!! AATTTACAGTTATCTCTATA+TGG + tig0023824:62812-62831 None:intergenic 20.0%
!!! CAATAACTCATTTTGATTAT+TGG - tig0023824:63038-63057 Msa1411650:intron 20.0%
! TGAACAATAATGACTTCAAA+AGG - tig0023824:62453-62472 Msa1411650:CDS 25.0%
! GAACAATAATGACTTCAAAA+GGG - tig0023824:62454-62473 Msa1411650:CDS 25.0%
! AAAAATTGCAACTTTGATCA+TGG - tig0023824:62635-62654 Msa1411650:intron 25.0%
! ACTTATCGGAACTAATAATT+TGG - tig0023824:62885-62904 Msa1411650:intron 25.0%
!!! CTCATTTTGATTATTGGTTT+TGG - tig0023824:63044-63063 Msa1411650:intron 25.0%
!!! TGTTTCATGTTTGATTTGAA+TGG - tig0023824:63236-63255 Msa1411650:CDS 25.0%
! TGAACAATAATGACTTCAAA+AGG - tig0023824:62453-62472 Msa1411650:CDS 25.0%
! GAACAATAATGACTTCAAAA+GGG - tig0023824:62454-62473 Msa1411650:CDS 25.0%
! AAAAATTGCAACTTTGATCA+TGG - tig0023824:62635-62654 Msa1411650:intron 25.0%
! ACTTATCGGAACTAATAATT+TGG - tig0023824:62885-62904 Msa1411650:intron 25.0%
!!! CTCATTTTGATTATTGGTTT+TGG - tig0023824:63044-63063 Msa1411650:intron 25.0%
!!! TGTTTCATGTTTGATTTGAA+TGG - tig0023824:63236-63255 Msa1411650:CDS 25.0%
TTGTTCAATGAAGTGAATTG+CGG + tig0023824:62440-62459 None:intergenic 30.0%
AATAATGACTTCAAAAGGGA+AGG - tig0023824:62458-62477 Msa1411650:CDS 30.0%
TAAGTACTCTCTTGATTTCA+AGG + tig0023824:62870-62889 None:intergenic 30.0%
!! GAAATCAAGAGAGTACTTAT+CGG - tig0023824:62871-62890 Msa1411650:intron 30.0%
ATCGGAACTAATAATTTGGA+AGG - tig0023824:62889-62908 Msa1411650:intron 30.0%
! ATGATTCCATCCTTGTTTAT+AGG - tig0023824:63332-63351 Msa1411650:intron 30.0%
TTGTTCAATGAAGTGAATTG+CGG + tig0023824:62440-62459 None:intergenic 30.0%
AATAATGACTTCAAAAGGGA+AGG - tig0023824:62458-62477 Msa1411650:CDS 30.0%
TAAGTACTCTCTTGATTTCA+AGG + tig0023824:62870-62889 None:intergenic 30.0%
!! GAAATCAAGAGAGTACTTAT+CGG - tig0023824:62871-62890 Msa1411650:intron 30.0%
ATCGGAACTAATAATTTGGA+AGG - tig0023824:62889-62908 Msa1411650:intron 30.0%
! ATGATTCCATCCTTGTTTAT+AGG - tig0023824:63332-63351 Msa1411650:intron 30.0%
!! TGATTTGTTTGATTGAGGCA+AGG + tig0023824:62552-62571 None:intergenic 35.0%
!! TGCTCTGATTTGTTTGATTG+AGG + tig0023824:62557-62576 None:intergenic 35.0%
ATTTGTACCGAGTTCAGATT+TGG - tig0023824:62596-62615 Msa1411650:intron 35.0%
!! AGATTTGGTGCTTGTAGAAA+CGG - tig0023824:62611-62630 Msa1411650:intron 35.0%
!! TGTGCAAGAAGTATTGCAAT+GGG - tig0023824:62777-62796 Msa1411650:intron 35.0%
TAATAATTTGGAAGGCAGCA+GGG - tig0023824:62897-62916 Msa1411650:intron 35.0%
CATTCCAAAGGAACAATATC+CGG + tig0023824:62986-63005 None:intergenic 35.0%
AAAGAGACAGTTCATTCCAA+AGG + tig0023824:62998-63017 None:intergenic 35.0%
! TTTTTGCAAGACAAGGCAAA+GGG + tig0023824:63285-63304 None:intergenic 35.0%
! ATTTTTGCAAGACAAGGCAA+AGG + tig0023824:63286-63305 None:intergenic 35.0%
! AGGAACATTTTTGCAAGACA+AGG + tig0023824:63292-63311 None:intergenic 35.0%
TGCAAAAATGTTCCTTCCTA+AGG - tig0023824:63297-63316 Msa1411650:CDS 35.0%
! TCATTTTCCATCAGAACCTT+AGG + tig0023824:63316-63335 None:intergenic 35.0%
! CTAAGAAGAAGCGTATACTT+GGG - tig0023824:63405-63424 Msa1411650:intron 35.0%
AGCCAGATCAATCGTATTTA+CGG - tig0023824:63437-63456 Msa1411650:CDS 35.0%
TCAATCGTATTTACGGTGAT+TGG - tig0023824:63444-63463 Msa1411650:CDS 35.0%
TGTTTCCAGAGCATAACAAA+AGG + tig0023824:63482-63501 None:intergenic 35.0%
!! TGATTTGTTTGATTGAGGCA+AGG + tig0023824:62552-62571 None:intergenic 35.0%
!! TGCTCTGATTTGTTTGATTG+AGG + tig0023824:62557-62576 None:intergenic 35.0%
ATTTGTACCGAGTTCAGATT+TGG - tig0023824:62596-62615 Msa1411650:intron 35.0%
!! AGATTTGGTGCTTGTAGAAA+CGG - tig0023824:62611-62630 Msa1411650:intron 35.0%
!! TGTGCAAGAAGTATTGCAAT+GGG - tig0023824:62777-62796 Msa1411650:intron 35.0%
TAATAATTTGGAAGGCAGCA+GGG - tig0023824:62897-62916 Msa1411650:intron 35.0%
CATTCCAAAGGAACAATATC+CGG + tig0023824:62986-63005 None:intergenic 35.0%
AAAGAGACAGTTCATTCCAA+AGG + tig0023824:62998-63017 None:intergenic 35.0%
! TTTTTGCAAGACAAGGCAAA+GGG + tig0023824:63285-63304 None:intergenic 35.0%
! ATTTTTGCAAGACAAGGCAA+AGG + tig0023824:63286-63305 None:intergenic 35.0%
! AGGAACATTTTTGCAAGACA+AGG + tig0023824:63292-63311 None:intergenic 35.0%
TGCAAAAATGTTCCTTCCTA+AGG - tig0023824:63297-63316 Msa1411650:CDS 35.0%
! TCATTTTCCATCAGAACCTT+AGG + tig0023824:63316-63335 None:intergenic 35.0%
! CTAAGAAGAAGCGTATACTT+GGG - tig0023824:63405-63424 Msa1411650:intron 35.0%
AGCCAGATCAATCGTATTTA+CGG - tig0023824:63437-63456 Msa1411650:CDS 35.0%
TCAATCGTATTTACGGTGAT+TGG - tig0023824:63444-63463 Msa1411650:CDS 35.0%
TGTTTCCAGAGCATAACAAA+AGG + tig0023824:63482-63501 None:intergenic 35.0%
TTCAATGAAGTGAATTGCGG+CGG + tig0023824:62437-62456 None:intergenic 40.0%
ACATCAATGCATCAGAAGGA+GGG + tig0023824:62511-62530 None:intergenic 40.0%
ACAAGCACCAAATCTGAACT+CGG + tig0023824:62606-62625 None:intergenic 40.0%
ATCATGGAGCTGAAGAGATA+AGG - tig0023824:62651-62670 Msa1411650:intron 40.0%
!! CTGTGCAAGAAGTATTGCAA+TGG - tig0023824:62776-62795 Msa1411650:intron 40.0%
!! GTGCAAGAAGTATTGCAATG+GGG - tig0023824:62778-62797 Msa1411650:intron 40.0%
ATGAAGATCCTGCACAGTTT+AGG - tig0023824:62837-62856 Msa1411650:intron 40.0%
TGAAGATCCTGCACAGTTTA+GGG - tig0023824:62838-62857 Msa1411650:intron 40.0%
CTAATAATTTGGAAGGCAGC+AGG - tig0023824:62896-62915 Msa1411650:intron 40.0%
CATACCGGATATTGTTCCTT+TGG - tig0023824:62979-62998 Msa1411650:CDS 40.0%
CTCTTTGCTCATGATGAAGA+AGG - tig0023824:63012-63031 Msa1411650:CDS 40.0%
TTTCCATCAGAACCTTAGGA+AGG + tig0023824:63312-63331 None:intergenic 40.0%
! TTCTTCCTTTTCCACAAGTC+GGG + tig0023824:63378-63397 None:intergenic 40.0%
! CTTCTTCCTTTTCCACAAGT+CGG + tig0023824:63379-63398 None:intergenic 40.0%
CCAAGTATACGCTTCTTCTT+AGG + tig0023824:63407-63426 None:intergenic 40.0%
! CCTAAGAAGAAGCGTATACT+TGG - tig0023824:63404-63423 Msa1411650:intron 40.0%
CACCGTAAATACGATTGATC+TGG + tig0023824:63442-63461 None:intergenic 40.0%
! ACGGTGATTGGATTGATGAT+TGG - tig0023824:63456-63475 Msa1411650:CDS 40.0%
!!! ATTGGCCTTTTGTTATGCTC+TGG - tig0023824:63474-63493 Msa1411650:CDS 40.0%
TTCAATGAAGTGAATTGCGG+CGG + tig0023824:62437-62456 None:intergenic 40.0%
ACATCAATGCATCAGAAGGA+GGG + tig0023824:62511-62530 None:intergenic 40.0%
ACAAGCACCAAATCTGAACT+CGG + tig0023824:62606-62625 None:intergenic 40.0%
ATCATGGAGCTGAAGAGATA+AGG - tig0023824:62651-62670 Msa1411650:intron 40.0%
!! CTGTGCAAGAAGTATTGCAA+TGG - tig0023824:62776-62795 Msa1411650:intron 40.0%
!! GTGCAAGAAGTATTGCAATG+GGG - tig0023824:62778-62797 Msa1411650:intron 40.0%
ATGAAGATCCTGCACAGTTT+AGG - tig0023824:62837-62856 Msa1411650:intron 40.0%
TGAAGATCCTGCACAGTTTA+GGG - tig0023824:62838-62857 Msa1411650:intron 40.0%
CTAATAATTTGGAAGGCAGC+AGG - tig0023824:62896-62915 Msa1411650:intron 40.0%
CATACCGGATATTGTTCCTT+TGG - tig0023824:62979-62998 Msa1411650:CDS 40.0%
CTCTTTGCTCATGATGAAGA+AGG - tig0023824:63012-63031 Msa1411650:CDS 40.0%
TTTCCATCAGAACCTTAGGA+AGG + tig0023824:63312-63331 None:intergenic 40.0%
! TTCTTCCTTTTCCACAAGTC+GGG + tig0023824:63378-63397 None:intergenic 40.0%
! CTTCTTCCTTTTCCACAAGT+CGG + tig0023824:63379-63398 None:intergenic 40.0%
CCAAGTATACGCTTCTTCTT+AGG + tig0023824:63407-63426 None:intergenic 40.0%
! CCTAAGAAGAAGCGTATACT+TGG - tig0023824:63404-63423 Msa1411650:intron 40.0%
CACCGTAAATACGATTGATC+TGG + tig0023824:63442-63461 None:intergenic 40.0%
! ACGGTGATTGGATTGATGAT+TGG - tig0023824:63456-63475 Msa1411650:CDS 40.0%
!!! ATTGGCCTTTTGTTATGCTC+TGG - tig0023824:63474-63493 Msa1411650:CDS 40.0%
! AGGAGGGCATATCAATGCAT+TGG + tig0023824:62495-62514 None:intergenic 45.0%
CACATCAATGCATCAGAAGG+AGG + tig0023824:62512-62531 None:intergenic 45.0%
GGTCACATCAATGCATCAGA+AGG + tig0023824:62515-62534 None:intergenic 45.0%
! AGCTTCTGCAAATTTGGTGG+TGG + tig0023824:62680-62699 None:intergenic 45.0%
CCTAGCTTCTGCAAATTTGG+TGG + tig0023824:62683-62702 None:intergenic 45.0%
CCACCAAATTTGCAGAAGCT+AGG - tig0023824:62680-62699 Msa1411650:intron 45.0%
CCACCTAGCTTCTGCAAATT+TGG + tig0023824:62686-62705 None:intergenic 45.0%
CCAAATTTGCAGAAGCTAGG+TGG - tig0023824:62683-62702 Msa1411650:intron 45.0%
TGCAGTTGATCTTCGTTGCA+CGG + tig0023824:62710-62729 None:intergenic 45.0%
AACGAAGATCAACTGCAGCT+GGG - tig0023824:62713-62732 Msa1411650:intron 45.0%
!! CAAGAAGTATTGCAATGGGG+AGG - tig0023824:62781-62800 Msa1411650:intron 45.0%
ACTGTGCAGGATCTTCATGA+AGG + tig0023824:62835-62854 None:intergenic 45.0%
GAATCATCCCTAAACTGTGC+AGG + tig0023824:62848-62867 None:intergenic 45.0%
AGACTAAGCTGTGTCGCAAT+TGG - tig0023824:62953-62972 Msa1411650:CDS 45.0%
! TGTCGCAATTGGAAGCATAC+CGG - tig0023824:62964-62983 Msa1411650:CDS 45.0%
ATGGAAAATGCTCCTCCTAC+TGG - tig0023824:63255-63274 Msa1411650:CDS 45.0%
AAGGCAAAGGGAAAACCAGT+AGG + tig0023824:63273-63292 None:intergenic 45.0%
! GTTCCTTCCTAAGGTTCTGA+TGG - tig0023824:63306-63325 Msa1411650:CDS 45.0%
GCTCTGCCTATAAACAAGGA+TGG + tig0023824:63341-63360 None:intergenic 45.0%
! TCCTTGTTTATAGGCAGAGC+AGG - tig0023824:63341-63360 Msa1411650:intron 45.0%
ACCTGCTCTGCCTATAAACA+AGG + tig0023824:63345-63364 None:intergenic 45.0%
! TTCTGAATGTACCCGACTTG+TGG - tig0023824:63364-63383 Msa1411650:intron 45.0%
! ATGTACCCGACTTGTGGAAA+AGG - tig0023824:63370-63389 Msa1411650:intron 45.0%
! CTCTGGAAACACACCTCATT+TGG - tig0023824:63491-63510 Msa1411650:CDS 45.0%
! AGGAGGGCATATCAATGCAT+TGG + tig0023824:62495-62514 None:intergenic 45.0%
CACATCAATGCATCAGAAGG+AGG + tig0023824:62512-62531 None:intergenic 45.0%
GGTCACATCAATGCATCAGA+AGG + tig0023824:62515-62534 None:intergenic 45.0%
! AGCTTCTGCAAATTTGGTGG+TGG + tig0023824:62680-62699 None:intergenic 45.0%
CCTAGCTTCTGCAAATTTGG+TGG + tig0023824:62683-62702 None:intergenic 45.0%
CCACCAAATTTGCAGAAGCT+AGG - tig0023824:62680-62699 Msa1411650:intron 45.0%
CCACCTAGCTTCTGCAAATT+TGG + tig0023824:62686-62705 None:intergenic 45.0%
CCAAATTTGCAGAAGCTAGG+TGG - tig0023824:62683-62702 Msa1411650:intron 45.0%
TGCAGTTGATCTTCGTTGCA+CGG + tig0023824:62710-62729 None:intergenic 45.0%
AACGAAGATCAACTGCAGCT+GGG - tig0023824:62713-62732 Msa1411650:intron 45.0%
!! CAAGAAGTATTGCAATGGGG+AGG - tig0023824:62781-62800 Msa1411650:intron 45.0%
ACTGTGCAGGATCTTCATGA+AGG + tig0023824:62835-62854 None:intergenic 45.0%
GAATCATCCCTAAACTGTGC+AGG + tig0023824:62848-62867 None:intergenic 45.0%
AGACTAAGCTGTGTCGCAAT+TGG - tig0023824:62953-62972 Msa1411650:CDS 45.0%
! TGTCGCAATTGGAAGCATAC+CGG - tig0023824:62964-62983 Msa1411650:CDS 45.0%
ATGGAAAATGCTCCTCCTAC+TGG - tig0023824:63255-63274 Msa1411650:CDS 45.0%
AAGGCAAAGGGAAAACCAGT+AGG + tig0023824:63273-63292 None:intergenic 45.0%
! GTTCCTTCCTAAGGTTCTGA+TGG - tig0023824:63306-63325 Msa1411650:CDS 45.0%
GCTCTGCCTATAAACAAGGA+TGG + tig0023824:63341-63360 None:intergenic 45.0%
! TCCTTGTTTATAGGCAGAGC+AGG - tig0023824:63341-63360 Msa1411650:intron 45.0%
ACCTGCTCTGCCTATAAACA+AGG + tig0023824:63345-63364 None:intergenic 45.0%
! TTCTGAATGTACCCGACTTG+TGG - tig0023824:63364-63383 Msa1411650:intron 45.0%
! ATGTACCCGACTTGTGGAAA+AGG - tig0023824:63370-63389 Msa1411650:intron 45.0%
! CTCTGGAAACACACCTCATT+TGG - tig0023824:63491-63510 Msa1411650:CDS 45.0%
CATTGATGTGACCTCCTCCA+AGG - tig0023824:62522-62541 Msa1411650:CDS 50.0%
CAACGAAGATCAACTGCAGC+TGG - tig0023824:62712-62731 Msa1411650:intron 50.0%
GGCTGTGAACAAGCAAGCAA+GGG - tig0023824:62918-62937 Msa1411650:CDS 50.0%
GCTGTGAACAAGCAAGCAAG+GGG - tig0023824:62919-62938 Msa1411650:CDS 50.0%
!! AGCAAGCAAGGGGCACTTAT+CGG - tig0023824:62929-62948 Msa1411650:CDS 50.0%
GCAAAGGGAAAACCAGTAGG+AGG + tig0023824:63270-63289 None:intergenic 50.0%
CATTGATGTGACCTCCTCCA+AGG - tig0023824:62522-62541 Msa1411650:CDS 50.0%
CAACGAAGATCAACTGCAGC+TGG - tig0023824:62712-62731 Msa1411650:intron 50.0%
GGCTGTGAACAAGCAAGCAA+GGG - tig0023824:62918-62937 Msa1411650:CDS 50.0%
GCTGTGAACAAGCAAGCAAG+GGG - tig0023824:62919-62938 Msa1411650:CDS 50.0%
!! AGCAAGCAAGGGGCACTTAT+CGG - tig0023824:62929-62948 Msa1411650:CDS 50.0%
GCAAAGGGAAAACCAGTAGG+AGG + tig0023824:63270-63289 None:intergenic 50.0%
GATGTGACCTCCTCCAAGGA+TGG - tig0023824:62526-62545 Msa1411650:CDS 55.0%
GATTGAGGCAAGGCCATCCT+TGG + tig0023824:62542-62561 None:intergenic 55.0%
GGGCTGTGAACAAGCAAGCA+AGG - tig0023824:62917-62936 Msa1411650:CDS 55.0%
GATGTGACCTCCTCCAAGGA+TGG - tig0023824:62526-62545 Msa1411650:CDS 55.0%
GATTGAGGCAAGGCCATCCT+TGG + tig0023824:62542-62561 None:intergenic 55.0%
GGGCTGTGAACAAGCAAGCA+AGG - tig0023824:62917-62936 Msa1411650:CDS 55.0%
TGAGGCAAGGCCATCCTTGG+AGG + tig0023824:62539-62558 None:intergenic 60.0%
TGAGGCAAGGCCATCCTTGG+AGG + tig0023824:62539-62558 None:intergenic 60.0%
GGCAAGGCCATCCTTGGAGG+AGG + tig0023824:62536-62555 None:intergenic 65.0%
GGCAAGGCCATCCTTGGAGG+AGG + tig0023824:62536-62555 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0023824 gene 62428 63517 62428 ID=Msa1411650;Name=Msa1411650
tig0023824 mRNA 62428 63517 62428 ID=Msa1411650-mRNA-1;Parent=Msa1411650;Name=Msa1411650-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|4|0|199
tig0023824 exon 63417 63517 63417 ID=Msa1411650-mRNA-1:exon:20239;Parent=Msa1411650-mRNA-1
tig0023824 exon 63121 63332 63121 ID=Msa1411650-mRNA-1:exon:20238;Parent=Msa1411650-mRNA-1
tig0023824 exon 62912 63034 62912 ID=Msa1411650-mRNA-1:exon:20237;Parent=Msa1411650-mRNA-1
tig0023824 exon 62428 62591 62428 ID=Msa1411650-mRNA-1:exon:20236;Parent=Msa1411650-mRNA-1
tig0023824 CDS 63417 63517 63417 ID=Msa1411650-mRNA-1:cds;Parent=Msa1411650-mRNA-1
tig0023824 CDS 63121 63332 63121 ID=Msa1411650-mRNA-1:cds;Parent=Msa1411650-mRNA-1
tig0023824 CDS 62912 63034 62912 ID=Msa1411650-mRNA-1:cds;Parent=Msa1411650-mRNA-1
tig0023824 CDS 62428 62591 62428 ID=Msa1411650-mRNA-1:cds;Parent=Msa1411650-mRNA-1
Gene Sequence

>Msa1411650

ATGTCACCGCCGCAATTCACTTCATTGAACAATAATGACTTCAAAAGGGAAGGAACTTCTCATTCCAATGCATTGATATGCCCTCCTTCTGATGCATTGATATTTGGTGCTTGTAGAAACGGAAAAAATTGCAACTTTGATCATGGAGCTGAAGAGATAAGGCAACCACCACCAAATTTGCAGAAGCTAGGTGGTCCGTGCAACGAAGATCAACTGCAGCTGGGAAATCAAGTTGAAGATGAAAAAATCATACAAAGGATGAAACTGTGCAAGAAGTATTGCAATGGGGAGGAATGTCCATATAGAGATAACTGCAGCAGGGCTGTGAACAAGCAAGCAAGGGGCACTTATCGGAAGACTAAGCTGTGTCGCAATTGGAAGCATACCGGATATTGTTCCTTTGGAATGAACTGTCTCTTTGCTCATGATGAAGAAGGCAGAGCAGGTTCTGAATGTACCCGACTTGTGGAAAAGGAAGAAGAGCAGCCTAAGAAGAAGCGTATACTTGGGTTGAAATTCAGCCAGATCAATCGTATTTACGGTGATTGGATTGATGATTGGCCTTTTGTTATGCTCTGGAAACACACCTCATTTGGATAA
Protein sequence

>Msa1411650

MSPPQFTSLNNNDFKREGTSHSNALICPPSDALIFGACRNGKNCNFDHGAEEIRQPPPNLQKLGGPCNEDQLQLGNQVEDEKIIQRMKLCKKYCNGEECPYRDNCSRAVNKQARGTYRKTKLCRNWKHTGYCSFGMNCLFAHDEEGRAGSECTRLVEKEEEQPKKKRILGLKFSQINRIYGDWIDDWPFVMLWKHTSFG*