Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411680 | sp|Q5CCK4|VAL2_ARATH | 43.681 | 364 | 163 | 7 | 11 | 336 | 174 | 533 | 2.54e-85 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411680 | G7KY51 | 94.034 | 352 | 15 | 2 | 1 | 346 | 1 | 352 | 0.0 | 685 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1411680 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411680 | MtrunA17_Chr2g0281191 | 46.619 | 281 | 115 | 4 | 89 | 336 | 320 | 598 | 9.18e-75 | 247 |
| Msa1411680 | MtrunA17_Chr7g0244881 | 93.805 | 113 | 7 | 0 | 1 | 113 | 1 | 113 | 5.83e-73 | 221 |
| Msa1411680 | MtrunA17_Chr4g0012861 | 56.109 | 221 | 94 | 2 | 3 | 223 | 199 | 416 | 3.44e-70 | 235 |
| Msa1411680 | MtrunA17_Chr4g0012861 | 52.239 | 134 | 50 | 3 | 225 | 345 | 484 | 616 | 1.05e-36 | 140 |
| Msa1411680 | MtrunA17_Chr7g0244871 | 94.681 | 94 | 5 | 0 | 113 | 206 | 4 | 97 | 1.02e-60 | 190 |
| Msa1411680 | MtrunA17_Chr3g0107701 | 48.684 | 228 | 106 | 7 | 2 | 223 | 218 | 440 | 7.31e-60 | 206 |
| Msa1411680 | MtrunA17_Chr3g0107701 | 51.282 | 117 | 44 | 2 | 240 | 343 | 522 | 638 | 7.02e-29 | 117 |
| Msa1411680 | MtrunA17_Chr5g0432721 | 51.744 | 172 | 79 | 2 | 52 | 222 | 254 | 422 | 1.04e-52 | 186 |
| Msa1411680 | MtrunA17_Chr5g0432721 | 55.556 | 72 | 31 | 1 | 242 | 312 | 507 | 578 | 1.22e-17 | 84.3 |
| Msa1411680 | MtrunA17_Chr7g0251891 | 38.835 | 103 | 62 | 1 | 121 | 222 | 16 | 118 | 6.84e-18 | 80.9 |
| Msa1411680 | MtrunA17_Chr7g0237841 | 39.216 | 102 | 60 | 2 | 121 | 220 | 623 | 724 | 1.64e-16 | 80.9 |
| Msa1411680 | MtrunA17_Chr1g0178071 | 36.842 | 152 | 72 | 8 | 98 | 233 | 50 | 193 | 1.86e-16 | 79.3 |
| Msa1411680 | MtrunA17_Chr8g0345771 | 39.823 | 113 | 58 | 5 | 121 | 226 | 171 | 280 | 9.00e-15 | 75.1 |
| Msa1411680 | MtrunA17_Chr7g0266821 | 41.905 | 105 | 54 | 5 | 126 | 226 | 65 | 166 | 7.04e-14 | 71.2 |
| Msa1411680 | MtrunA17_Chr5g0422501 | 37.705 | 122 | 61 | 6 | 121 | 229 | 235 | 354 | 1.25e-13 | 71.6 |
| Msa1411680 | MtrunA17_Chr7g0276471 | 40.659 | 91 | 49 | 3 | 121 | 208 | 117 | 205 | 2.12e-13 | 70.9 |
| Msa1411680 | MtrunA17_Chr1g0198661 | 33.784 | 148 | 69 | 6 | 108 | 228 | 168 | 313 | 8.92e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411680 | AT4G32010.2 | 44.167 | 360 | 163 | 6 | 11 | 336 | 174 | 529 | 3.03e-88 | 281 |
| Msa1411680 | AT4G32010.1 | 43.681 | 364 | 163 | 7 | 11 | 336 | 174 | 533 | 2.58e-86 | 276 |
| Msa1411680 | AT2G30470.1 | 46.102 | 295 | 112 | 5 | 89 | 336 | 262 | 556 | 5.76e-75 | 246 |
| Msa1411680 | AT4G21550.3 | 38.489 | 278 | 145 | 7 | 54 | 310 | 254 | 526 | 4.94e-48 | 170 |
| Msa1411680 | AT4G21550.1 | 42.373 | 236 | 120 | 4 | 91 | 312 | 295 | 528 | 1.64e-42 | 157 |
| Msa1411680 | AT4G21550.2 | 37.500 | 264 | 139 | 7 | 54 | 296 | 254 | 512 | 7.11e-42 | 153 |
| Msa1411680 | AT3G26790.1 | 40.385 | 104 | 61 | 1 | 121 | 223 | 91 | 194 | 4.05e-18 | 84.3 |
| Msa1411680 | AT1G28300.1 | 39.669 | 121 | 69 | 3 | 88 | 205 | 136 | 255 | 1.87e-17 | 82.8 |
| Msa1411680 | AT3G24650.1 | 42.157 | 102 | 57 | 2 | 121 | 220 | 571 | 672 | 2.58e-17 | 83.6 |
| Msa1411680 | AT3G25730.1 | 38.017 | 121 | 66 | 5 | 121 | 234 | 182 | 300 | 2.86e-15 | 76.3 |
| Msa1411680 | AT5G06250.4 | 40.870 | 115 | 52 | 4 | 121 | 221 | 45 | 157 | 3.02e-15 | 75.5 |
| Msa1411680 | AT2G36080.4 | 41.667 | 108 | 54 | 4 | 121 | 221 | 37 | 142 | 3.20e-15 | 73.2 |
| Msa1411680 | AT2G36080.2 | 41.667 | 108 | 54 | 4 | 121 | 221 | 37 | 142 | 3.20e-15 | 73.2 |
| Msa1411680 | AT5G06250.5 | 40.870 | 115 | 52 | 4 | 121 | 221 | 45 | 157 | 3.23e-15 | 75.1 |
| Msa1411680 | AT5G06250.2 | 40.870 | 115 | 52 | 4 | 121 | 221 | 45 | 157 | 3.44e-15 | 75.5 |
| Msa1411680 | AT2G36080.3 | 41.667 | 108 | 54 | 4 | 121 | 221 | 37 | 142 | 3.49e-15 | 74.3 |
| Msa1411680 | AT2G36080.1 | 41.667 | 108 | 54 | 4 | 121 | 221 | 37 | 142 | 3.77e-15 | 74.7 |
| Msa1411680 | AT5G06250.3 | 40.870 | 115 | 52 | 4 | 121 | 221 | 45 | 157 | 4.14e-15 | 74.7 |
| Msa1411680 | AT1G13260.1 | 37.500 | 120 | 68 | 5 | 120 | 234 | 186 | 303 | 4.29e-15 | 75.9 |
| Msa1411680 | AT5G06250.1 | 40.870 | 115 | 52 | 4 | 121 | 221 | 45 | 157 | 4.67e-15 | 74.7 |
| Msa1411680 | AT1G68840.2 | 44.086 | 93 | 45 | 4 | 121 | 208 | 187 | 277 | 2.64e-14 | 73.6 |
| Msa1411680 | AT1G68840.1 | 44.086 | 93 | 45 | 4 | 121 | 208 | 187 | 277 | 2.64e-14 | 73.6 |
| Msa1411680 | AT3G11580.4 | 39.316 | 117 | 52 | 5 | 121 | 221 | 28 | 141 | 4.64e-14 | 71.2 |
| Msa1411680 | AT3G11580.2 | 39.316 | 117 | 52 | 5 | 121 | 221 | 28 | 141 | 4.64e-14 | 71.2 |
| Msa1411680 | AT3G11580.5 | 39.316 | 117 | 52 | 5 | 121 | 221 | 28 | 141 | 4.64e-14 | 71.2 |
| Msa1411680 | AT2G46870.1 | 38.889 | 108 | 57 | 5 | 121 | 221 | 34 | 139 | 9.15e-14 | 71.6 |
| Msa1411680 | AT3G11580.1 | 39.316 | 117 | 52 | 5 | 121 | 221 | 28 | 141 | 1.02e-13 | 70.9 |
| Msa1411680 | AT3G11580.3 | 39.316 | 117 | 52 | 5 | 121 | 221 | 28 | 141 | 1.07e-12 | 68.9 |
| Msa1411680 | AT3G61970.1 | 37.037 | 108 | 59 | 4 | 121 | 221 | 22 | 127 | 1.63e-12 | 67.8 |
| Msa1411680 | AT1G25560.1 | 38.393 | 112 | 55 | 5 | 121 | 220 | 194 | 303 | 2.18e-12 | 67.8 |
| Msa1411680 | AT4G01500.1 | 35.714 | 126 | 65 | 5 | 93 | 208 | 2 | 121 | 2.73e-12 | 67.4 |
| Msa1411680 | AT1G01030.2 | 39.560 | 91 | 50 | 3 | 121 | 208 | 55 | 143 | 4.19e-12 | 66.6 |
| Msa1411680 | AT1G01030.1 | 39.560 | 91 | 50 | 3 | 121 | 208 | 55 | 143 | 4.40e-12 | 67.0 |
Find 75 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGATCTGTGGAGAATTTA+TGG | 0.154338 | tig0023826:-38834 | Msa1411680:CDS |
| CAATTGCAAGTTGGAGATTT+TGG | 0.162855 | tig0023826:-40354 | Msa1411680:intron |
| TATATCCTGCTGCTATTATT+TGG | 0.179530 | tig0023826:+40414 | None:intergenic |
| TGGTGTTTAAATTTAGATTT+TGG | 0.182651 | tig0023826:-40437 | Msa1411680:CDS |
| CTTACTTCAACACATGATTT+TGG | 0.195081 | tig0023826:+40625 | None:intergenic |
| TGTTTCCTTTGTCGTCTTAC+AGG | 0.195568 | tig0023826:+41057 | None:intergenic |
| AAGAAGGGTATATTCATAAA+TGG | 0.214466 | tig0023826:-39266 | Msa1411680:CDS |
| ATGACCTTTAATACTCCTTT+TGG | 0.228375 | tig0023826:-41264 | Msa1411680:CDS |
| GGCTCTCCCTCTGAGAGATT+TGG | 0.271633 | tig0023826:+41186 | None:intergenic |
| AATTCTTGATCGGTAATCTT+AGG | 0.277029 | tig0023826:+41015 | None:intergenic |
| CATTGATGCTGAAACTTACT+TGG | 0.284975 | tig0023826:-39725 | Msa1411680:CDS |
| GACATACTTTCCACCTATTT+CGG | 0.293074 | tig0023826:-40508 | Msa1411680:CDS |
| ATTTCCAAAAGGAGTATTAA+AGG | 0.297494 | tig0023826:+41260 | None:intergenic |
| CAAGAATTACAACAATTATC+TGG | 0.358413 | tig0023826:-41000 | Msa1411680:CDS |
| TTCCTTGCGACATGATGAAT+TGG | 0.372803 | tig0023826:+41084 | None:intergenic |
| TTTGGAAATTCAAATTCCTT+TGG | 0.374583 | tig0023826:-41246 | Msa1411680:CDS |
| ATACCCTTCTTTGCAATGAT+AGG | 0.386942 | tig0023826:+39278 | None:intergenic |
| AATTTGCAGTAACATTTAAC+CGG | 0.402045 | tig0023826:-40186 | Msa1411680:intron |
| CTCAATAGCAAGAGTTGACT+TGG | 0.413822 | tig0023826:+41134 | None:intergenic |
| TTCAAACATTGTGGTGATTG+AGG | 0.415224 | tig0023826:-39661 | Msa1411680:CDS |
| GGGATCTGTGGAGAATTTAT+GGG | 0.418012 | tig0023826:-38833 | Msa1411680:CDS |
| TGCTCAGAATGGAGAAAGTT+GGG | 0.421979 | tig0023826:-38853 | Msa1411680:CDS |
| TGCAAAAGATTCTGAGACTT+AGG | 0.426953 | tig0023826:+41165 | None:intergenic |
| AGACGTGAAAGGGAAGAAAT+TGG | 0.434182 | tig0023826:-40457 | Msa1411680:CDS |
| GGAAATTCAAATTCCTTTGG+TGG | 0.453203 | tig0023826:-41243 | Msa1411680:CDS |
| AGAAGGGTATATTCATAAAT+GGG | 0.456876 | tig0023826:-39265 | Msa1411680:intron |
| GTGCTCAGAATGGAGAAAGT+TGG | 0.457967 | tig0023826:-38854 | Msa1411680:CDS |
| TACAAATCGAAGACGTGAAA+GGG | 0.459274 | tig0023826:-40467 | Msa1411680:CDS |
| GTTAATGTCTTCTCGAATAG+TGG | 0.460753 | tig0023826:+40685 | None:intergenic |
| GTTTCAGCATCAATGCTTGT+TGG | 0.461465 | tig0023826:+39733 | None:intergenic |
| AATAACATTGCTATGTCTAA+AGG | 0.470824 | tig0023826:-39858 | Msa1411680:CDS |
| ACAATGTTTGAATTAACTGT+TGG | 0.478449 | tig0023826:+39672 | None:intergenic |
| AAGGAATTTGAATTTCCAAA+AGG | 0.480284 | tig0023826:+41249 | None:intergenic |
| GCTAGTGATGTTGGTCGACT+TGG | 0.492614 | tig0023826:-40661 | Msa1411680:CDS |
| ACCTCCTATCATTGCAAAGA+AGG | 0.496773 | tig0023826:-39282 | Msa1411680:CDS |
| CCCTTCTTTGCAATGATAGG+AGG | 0.497014 | tig0023826:+39281 | None:intergenic |
| TGCAGTAACATTTAACCGGA+TGG | 0.497340 | tig0023826:-40182 | Msa1411680:intron |
| AACTGATAATAGGGTTTCGA+AGG | 0.500618 | tig0023826:-40147 | Msa1411680:CDS |
| TGTTGGTCGACTTGGTCGCA+TGG | 0.503887 | tig0023826:-40653 | Msa1411680:CDS |
| CCTATTATCAGTTTCTCCCC+CGG | 0.509156 | tig0023826:+40157 | None:intergenic |
| AACATTTAACCGGATGGACC+CGG | 0.514859 | tig0023826:-40176 | Msa1411680:CDS |
| TTTGGCCAAATAATAGCAGC+AGG | 0.517585 | tig0023826:-40419 | Msa1411680:CDS |
| ATGGAGAAAGTTGGGATCTG+TGG | 0.531161 | tig0023826:-38845 | Msa1411680:CDS |
| TTAGGAATTACTAGCTCTTG+TGG | 0.532779 | tig0023826:+39810 | None:intergenic |
| TTTCCACCTATTTCGGAACC+AGG | 0.534109 | tig0023826:-40501 | Msa1411680:CDS |
| ATGTTTGAATTAACTGTTGG+AGG | 0.534643 | tig0023826:+39675 | None:intergenic |
| AATAGGGTTTCGAAGGGCAT+CGG | 0.534779 | tig0023826:-40140 | Msa1411680:intron |
| CAGTCTATGCAATTGCAAGT+TGG | 0.537113 | tig0023826:-40363 | Msa1411680:CDS |
| TAATTGTTGTAATTCTTGAT+CGG | 0.538634 | tig0023826:+41005 | None:intergenic |
| ACATTAACTGCTAGTGATGT+TGG | 0.541192 | tig0023826:-40670 | Msa1411680:CDS |
| AGAATTTATGGGGTCAAAGA+AGG | 0.549360 | tig0023826:-38822 | None:intergenic |
| TTTGAATTAACTGTTGGAGG+TGG | 0.549434 | tig0023826:+39678 | None:intergenic |
| ACATTTAACCGGATGGACCC+GGG | 0.549810 | tig0023826:-40175 | Msa1411680:CDS |
| TTCCACCTATTTCGGAACCA+GGG | 0.553619 | tig0023826:-40500 | Msa1411680:CDS |
| TTACAAATCGAAGACGTGAA+AGG | 0.557247 | tig0023826:-40468 | Msa1411680:CDS |
| AACAGTTAATTCAAACATTG+TGG | 0.562770 | tig0023826:-39670 | Msa1411680:CDS |
| TTCAATTCCAAATCTCTCAG+AGG | 0.562873 | tig0023826:-41193 | Msa1411680:CDS |
| CCTCCTATCATTGCAAAGAA+GGG | 0.572822 | tig0023826:-39281 | Msa1411680:CDS |
| ATTGATGCTGAAACTTACTT+GGG | 0.573068 | tig0023826:-39724 | Msa1411680:CDS |
| TCAATTCCAAATCTCTCAGA+GGG | 0.577689 | tig0023826:-41192 | Msa1411680:CDS |
| AATTCAAATTCCTTTGGTGG+TGG | 0.581836 | tig0023826:-41240 | Msa1411680:CDS |
| ATATATATGAATCATTAGCT+AGG | 0.582039 | tig0023826:-41299 | Msa1411680:CDS |
| CTCCAATTCATCATGTCGCA+AGG | 0.583526 | tig0023826:-41086 | Msa1411680:CDS |
| CTCGAATAGTGGCACAATGG+CGG | 0.604126 | tig0023826:+40696 | None:intergenic |
| TCCACCTATTTCGGAACCAG+GGG | 0.605085 | tig0023826:-40499 | Msa1411680:CDS |
| ACAACAGGATGAACGAGCAA+TGG | 0.610776 | tig0023826:-38891 | Msa1411680:intron |
| AGTGTGATAAGTGCTCAGAA+TGG | 0.614321 | tig0023826:-38864 | Msa1411680:CDS |
| CATTTAACCGGATGGACCCG+GGG | 0.615232 | tig0023826:-40174 | Msa1411680:CDS |
| GGATCTGTGGAGAATTTATG+GGG | 0.621372 | tig0023826:-38832 | Msa1411680:CDS |
| ACTGATAATAGGGTTTCGAA+GGG | 0.642961 | tig0023826:-40146 | Msa1411680:CDS |
| TCAATAGCAAGAGTTGACTT+GGG | 0.655637 | tig0023826:+41135 | None:intergenic |
| CCACCTATTTCGGAACCAGG+GGG | 0.664507 | tig0023826:-40498 | Msa1411680:CDS |
| AATCGCCTGTAAGACGACAA+AGG | 0.682009 | tig0023826:-41062 | Msa1411680:CDS |
| CTTCTCGAATAGTGGCACAA+TGG | 0.682280 | tig0023826:+40693 | None:intergenic |
| ATTTAACCGGATGGACCCGG+GGG | 0.732920 | tig0023826:-40173 | Msa1411680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACTAAATTTTTCATTAT+AGG | - | tig0023826:39174-39193 | Msa1411680:intron | 10.0% |
| !! | ATTCAATATAAAATAAAATG+AGG | + | tig0023826:39338-39357 | None:intergenic | 10.0% |
| !! | ATTTACATAAATACAAAAAT+AGG | + | tig0023826:40242-40261 | None:intergenic | 10.0% |
| !!! | TTTTTATGAAATTCTTTATT+TGG | - | tig0023826:40557-40576 | Msa1411680:intron | 10.0% |
| !!! | ATTTTTTAAAGATGTTTTAT+CGG | - | tig0023826:40794-40813 | Msa1411680:intron | 10.0% |
| !!! | AAACGATAAATTTTTTTATA+GGG | + | tig0023826:40989-41008 | None:intergenic | 10.0% |
| !!! | AAAACGATAAATTTTTTTAT+AGG | + | tig0023826:40990-41009 | None:intergenic | 10.0% |
| !! | TGAAAAATTTAGTAAAGTAA+TGG | + | tig0023826:39170-39189 | None:intergenic | 15.0% |
| !! | AAAGATTTATCATCAAATAT+TGG | + | tig0023826:39571-39590 | None:intergenic | 15.0% |
| !!! | GTCATAAAGAAAATATATTT+TGG | + | tig0023826:41195-41214 | None:intergenic | 15.0% |
| !! | ATATATATGAATCATTAGCT+AGG | - | tig0023826:38838-38857 | Msa1411680:CDS | 20.0% |
| !! | TAATTGTTGTAATTCTTGAT+CGG | + | tig0023826:39135-39154 | None:intergenic | 20.0% |
| !! | TTATACAACAGTAAATTGAA+CGG | + | tig0023826:39264-39283 | None:intergenic | 20.0% |
| !!! | TGGTGTTTAAATTTAGATTT+TGG | - | tig0023826:39700-39719 | Msa1411680:CDS | 20.0% |
| !! | GTATATGAAAAAAGTAACAT+TGG | + | tig0023826:39859-39878 | None:intergenic | 20.0% |
| !!! | CTGCAAATTTTTTTTGTAAA+AGG | + | tig0023826:39940-39959 | None:intergenic | 20.0% |
| !! | TTCATCAAAATAAACTTTAG+AGG | - | tig0023826:40607-40626 | Msa1411680:intron | 20.0% |
| !!! | TAAACTTTAGAGGAATAATA+TGG | - | tig0023826:40617-40636 | Msa1411680:intron | 20.0% |
| !!! | CAAAAGTTCATAATTTTGTA+AGG | + | tig0023826:40958-40977 | None:intergenic | 20.0% |
| !!! | TTGTTATTTTAAATATGTCG+AGG | + | tig0023826:41018-41037 | None:intergenic | 20.0% |
| !!! | TCGACATATTTAAAATAACA+AGG | - | tig0023826:41017-41036 | Msa1411680:CDS | 20.0% |
| !!! | ATTTCCAAAAGGAGTATTAA+AGG | + | tig0023826:38880-38899 | None:intergenic | 25.0% |
| ! | AAGGAATTTGAATTTCCAAA+AGG | + | tig0023826:38891-38910 | None:intergenic | 25.0% |
| ! | TTTGGAAATTCAAATTCCTT+TGG | - | tig0023826:38891-38910 | Msa1411680:intron | 25.0% |
| ! | CAAGAATTACAACAATTATC+TGG | - | tig0023826:39137-39156 | Msa1411680:intron | 25.0% |
| !! | TTTAAGCTTTAACACATCAT+TGG | + | tig0023826:39419-39438 | None:intergenic | 25.0% |
| !!! | TAATTTGTTAGAACTGAAAG+TGG | - | tig0023826:39594-39613 | Msa1411680:intron | 25.0% |
| ! | TTATTATTTCACTGTCATGT+AGG | - | tig0023826:39880-39899 | Msa1411680:intron | 25.0% |
| ! | AATTTGCAGTAACATTTAAC+CGG | - | tig0023826:39951-39970 | Msa1411680:intron | 25.0% |
| ! | TATGTAAGATTGCAAAAATG+TGG | - | tig0023826:40068-40087 | Msa1411680:intron | 25.0% |
| !!! | CATATGTCTAATTTGTTCTA+TGG | - | tig0023826:40196-40215 | Msa1411680:intron | 25.0% |
| ! | AATAACATTGCTATGTCTAA+AGG | - | tig0023826:40279-40298 | Msa1411680:intron | 25.0% |
| ! | ACAATGTTTGAATTAACTGT+TGG | + | tig0023826:40468-40487 | None:intergenic | 25.0% |
| ! | AACAGTTAATTCAAACATTG+TGG | - | tig0023826:40467-40486 | Msa1411680:CDS | 25.0% |
| ! | TAGTCCTCAAAGATATAATA+TGG | + | tig0023826:40586-40605 | None:intergenic | 25.0% |
| !! | ATGGTGACATTTCAATTTTA+AGG | - | tig0023826:40636-40655 | Msa1411680:CDS | 25.0% |
| !! | TAAAATTGAAGCACTCAATA+TGG | + | tig0023826:40767-40786 | None:intergenic | 25.0% |
| !! | AAGAAGGGTATATTCATAAA+TGG | - | tig0023826:40871-40890 | Msa1411680:intron | 25.0% |
| !! | AGAAGGGTATATTCATAAAT+GGG | - | tig0023826:40872-40891 | Msa1411680:intron | 25.0% |
| !! | AAACACCTTTTATAAGATCA+GGG | + | tig0023826:41071-41090 | None:intergenic | 25.0% |
| !! | AAAACACCTTTTATAAGATC+AGG | + | tig0023826:41072-41091 | None:intergenic | 25.0% |
| ! | ATGACCTTTAATACTCCTTT+TGG | - | tig0023826:38873-38892 | Msa1411680:CDS | 30.0% |
| AATTCTTGATCGGTAATCTT+AGG | + | tig0023826:39125-39144 | None:intergenic | 30.0% | |
| ! | TAGGTCAAATGTTTTATGCT+AGG | - | tig0023826:39193-39212 | Msa1411680:intron | 30.0% |
| GTTTGTATGATTAGTACTCT+TGG | - | tig0023826:39370-39389 | Msa1411680:intron | 30.0% | |
| ! | CTTTAACACATCATTGGTTA+TGG | + | tig0023826:39413-39432 | None:intergenic | 30.0% |
| ! | CTTACTTCAACACATGATTT+TGG | + | tig0023826:39515-39534 | None:intergenic | 30.0% |
| ATTTGTAAATAAATACCCCC+TGG | + | tig0023826:39657-39676 | None:intergenic | 30.0% | |
| TATATCCTGCTGCTATTATT+TGG | + | tig0023826:39726-39745 | None:intergenic | 30.0% | |
| !! | AGCAGGATATATGTTTTAGA+AGG | - | tig0023826:39735-39754 | Msa1411680:CDS | 30.0% |
| ! | AATTGCTATTGAACTATGAG+TGG | + | tig0023826:39822-39841 | None:intergenic | 30.0% |
| ! | ATTCTGCTATGTGTTATTAG+AGG | - | tig0023826:40123-40142 | Msa1411680:intron | 30.0% |
| ! | TCACAAGTTCTTTTCTTCTT+AGG | + | tig0023826:40348-40367 | None:intergenic | 30.0% |
| ATTGATGCTGAAACTTACTT+GGG | - | tig0023826:40413-40432 | Msa1411680:CDS | 30.0% | |
| ATGTTTGAATTAACTGTTGG+AGG | + | tig0023826:40465-40484 | None:intergenic | 30.0% | |
| GTGACCATATTATATCTTTG+AGG | - | tig0023826:40579-40598 | Msa1411680:intron | 30.0% | |
| ! | TTTTGAGCAAACATTCAATG+TGG | + | tig0023826:40723-40742 | None:intergenic | 30.0% |
| GAATGTTTGCTCAAAATCTA+TGG | - | tig0023826:40727-40746 | Msa1411680:intron | 30.0% | |
| GACTATACTAAAATTGTTGC+AGG | - | tig0023826:40831-40850 | Msa1411680:intron | 30.0% | |
| !! | ATTAGTAGTTTAGCTTGACA+TGG | + | tig0023826:41165-41184 | None:intergenic | 30.0% |
| GGAAATTCAAATTCCTTTGG+TGG | - | tig0023826:38894-38913 | Msa1411680:intron | 35.0% | |
| AATTCAAATTCCTTTGGTGG+TGG | - | tig0023826:38897-38916 | Msa1411680:intron | 35.0% | |
| TTCAATTCCAAATCTCTCAG+AGG | - | tig0023826:38944-38963 | Msa1411680:intron | 35.0% | |
| TCAATTCCAAATCTCTCAGA+GGG | - | tig0023826:38945-38964 | Msa1411680:intron | 35.0% | |
| !! | TGCAAAAGATTCTGAGACTT+AGG | + | tig0023826:38975-38994 | None:intergenic | 35.0% |
| ! | TCAATAGCAAGAGTTGACTT+GGG | + | tig0023826:39005-39024 | None:intergenic | 35.0% |
| GTTAATGTCTTCTCGAATAG+TGG | + | tig0023826:39455-39474 | None:intergenic | 35.0% | |
| ACATTAACTGCTAGTGATGT+TGG | - | tig0023826:39467-39486 | Msa1411680:intron | 35.0% | |
| GACATACTTTCCACCTATTT+CGG | - | tig0023826:39629-39648 | Msa1411680:intron | 35.0% | |
| TTACAAATCGAAGACGTGAA+AGG | - | tig0023826:39669-39688 | Msa1411680:CDS | 35.0% | |
| TACAAATCGAAGACGTGAAA+GGG | - | tig0023826:39670-39689 | Msa1411680:CDS | 35.0% | |
| !! | TTTTAGAAGGAGTACATGCT+TGG | - | tig0023826:39748-39767 | Msa1411680:CDS | 35.0% |
| !! | CAATTGCAAGTTGGAGATTT+TGG | - | tig0023826:39783-39802 | Msa1411680:CDS | 35.0% |
| AACTGATAATAGGGTTTCGA+AGG | - | tig0023826:39990-40009 | Msa1411680:intron | 35.0% | |
| ACTGATAATAGGGTTTCGAA+GGG | - | tig0023826:39991-40010 | Msa1411680:intron | 35.0% | |
| ATGTAAATTTCTTTCCCAGC+AGG | - | tig0023826:40254-40273 | Msa1411680:intron | 35.0% | |
| ! | TTAGGAATTACTAGCTCTTG+TGG | + | tig0023826:40330-40349 | None:intergenic | 35.0% |
| CATTGATGCTGAAACTTACT+TGG | - | tig0023826:40412-40431 | Msa1411680:CDS | 35.0% | |
| TTTGAATTAACTGTTGGAGG+TGG | + | tig0023826:40462-40481 | None:intergenic | 35.0% | |
| TTCAAACATTGTGGTGATTG+AGG | - | tig0023826:40476-40495 | Msa1411680:CDS | 35.0% | |
| TGTGACAATGCTCTAATCAT+TGG | - | tig0023826:40693-40712 | Msa1411680:CDS | 35.0% | |
| TGTTTGCTCAAAATCTATGG+AGG | - | tig0023826:40730-40749 | Msa1411680:intron | 35.0% | |
| ATACCCTTCTTTGCAATGAT+AGG | + | tig0023826:40862-40881 | None:intergenic | 35.0% | |
| TTGCATTGTGATTGAACAAC+AGG | - | tig0023826:41231-41250 | Msa1411680:CDS | 35.0% | |
| CTCAATAGCAAGAGTTGACT+TGG | + | tig0023826:39006-39025 | None:intergenic | 40.0% | |
| GTCAGAGAAAAATGTGTGCA+TGG | - | tig0023826:39025-39044 | Msa1411680:intron | 40.0% | |
| TTCCTTGCGACATGATGAAT+TGG | + | tig0023826:39056-39075 | None:intergenic | 40.0% | |
| TGTTTCCTTTGTCGTCTTAC+AGG | + | tig0023826:39083-39102 | None:intergenic | 40.0% | |
| AGACGTGAAAGGGAAGAAAT+TGG | - | tig0023826:39680-39699 | Msa1411680:CDS | 40.0% | |
| TTTGGCCAAATAATAGCAGC+AGG | - | tig0023826:39718-39737 | Msa1411680:CDS | 40.0% | |
| CAGTCTATGCAATTGCAAGT+TGG | - | tig0023826:39774-39793 | Msa1411680:CDS | 40.0% | |
| TGTCATGTAGGCTCAAACTA+TGG | - | tig0023826:39892-39911 | Msa1411680:intron | 40.0% | |
| TGCAGTAACATTTAACCGGA+TGG | - | tig0023826:39955-39974 | Msa1411680:intron | 40.0% | |
| AGCAATGTTATTCACCTGCT+GGG | + | tig0023826:40271-40290 | None:intergenic | 40.0% | |
| TAGCAATGTTATTCACCTGC+TGG | + | tig0023826:40272-40291 | None:intergenic | 40.0% | |
| GTTTCAGCATCAATGCTTGT+TGG | + | tig0023826:40407-40426 | None:intergenic | 40.0% | |
| GACAATGCTCTAATCATTGG+AGG | - | tig0023826:40696-40715 | Msa1411680:CDS | 40.0% | |
| ACCTCCTATCATTGCAAAGA+AGG | - | tig0023826:40855-40874 | Msa1411680:intron | 40.0% | |
| CCTCCTATCATTGCAAAGAA+GGG | - | tig0023826:40856-40875 | Msa1411680:intron | 40.0% | |
| TGTCTCACAGTAGGAACTAT+AGG | + | tig0023826:41045-41064 | None:intergenic | 40.0% | |
| CAGCACCCTGATCTTATAAA+AGG | - | tig0023826:41063-41082 | Msa1411680:CDS | 40.0% | |
| AGTGTGATAAGTGCTCAGAA+TGG | - | tig0023826:41273-41292 | Msa1411680:CDS | 40.0% | |
| TGCTCAGAATGGAGAAAGTT+GGG | - | tig0023826:41284-41303 | Msa1411680:CDS | 40.0% | |
| TGGGATCTGTGGAGAATTTA+TGG | - | tig0023826:41303-41322 | Msa1411680:CDS | 40.0% | |
| GGGATCTGTGGAGAATTTAT+GGG | - | tig0023826:41304-41323 | Msa1411680:CDS | 40.0% | |
| GGATCTGTGGAGAATTTATG+GGG | - | tig0023826:41305-41324 | Msa1411680:CDS | 40.0% | |
| !! | TTGCTTTTCACCACCACCAA+AGG | + | tig0023826:38910-38929 | None:intergenic | 45.0% |
| CTCCAATTCATCATGTCGCA+AGG | - | tig0023826:39051-39070 | Msa1411680:intron | 45.0% | |
| AATCGCCTGTAAGACGACAA+AGG | - | tig0023826:39075-39094 | Msa1411680:intron | 45.0% | |
| CTTCTCGAATAGTGGCACAA+TGG | + | tig0023826:39447-39466 | None:intergenic | 45.0% | |
| TTTCCACCTATTTCGGAACC+AGG | - | tig0023826:39636-39655 | Msa1411680:intron | 45.0% | |
| TTCCACCTATTTCGGAACCA+GGG | - | tig0023826:39637-39656 | Msa1411680:intron | 45.0% | |
| AACATTTAACCGGATGGACC+CGG | - | tig0023826:39961-39980 | Msa1411680:intron | 45.0% | |
| CTATTATCAGTTTCTCCCCC+GGG | + | tig0023826:39982-40001 | None:intergenic | 45.0% | |
| CCTATTATCAGTTTCTCCCC+CGG | + | tig0023826:39983-40002 | None:intergenic | 45.0% | |
| CGGGGGAGAAACTGATAATA+GGG | - | tig0023826:39981-40000 | Msa1411680:intron | 45.0% | |
| ! | AATAGGGTTTCGAAGGGCAT+CGG | - | tig0023826:39997-40016 | Msa1411680:intron | 45.0% |
| !! | GGCATCGGTTTCTTCTATAC+AGG | - | tig0023826:40012-40031 | Msa1411680:intron | 45.0% |
| CCCTTCTTTGCAATGATAGG+AGG | + | tig0023826:40859-40878 | None:intergenic | 45.0% | |
| ACAACAGGATGAACGAGCAA+TGG | - | tig0023826:41246-41265 | Msa1411680:CDS | 45.0% | |
| GTGCTCAGAATGGAGAAAGT+TGG | - | tig0023826:41283-41302 | Msa1411680:CDS | 45.0% | |
| ATGGAGAAAGTTGGGATCTG+TGG | - | tig0023826:41292-41311 | Msa1411680:CDS | 45.0% | |
| CTCGAATAGTGGCACAATGG+CGG | + | tig0023826:39444-39463 | None:intergenic | 50.0% | |
| GCTAGTGATGTTGGTCGACT+TGG | - | tig0023826:39476-39495 | Msa1411680:intron | 50.0% | |
| TCCACCTATTTCGGAACCAG+GGG | - | tig0023826:39638-39657 | Msa1411680:CDS | 50.0% | |
| ATACCCCCTGGTTCCGAAAT+AGG | + | tig0023826:39645-39664 | None:intergenic | 50.0% | |
| ACATTTAACCGGATGGACCC+GGG | - | tig0023826:39962-39981 | Msa1411680:intron | 50.0% | |
| CCGGGGGAGAAACTGATAAT+AGG | - | tig0023826:39980-39999 | Msa1411680:intron | 50.0% | |
| ! | GGCTCTCCCTCTGAGAGATT+TGG | + | tig0023826:38954-38973 | None:intergenic | 55.0% |
| !! | TGTTGGTCGACTTGGTCGCA+TGG | - | tig0023826:39484-39503 | Msa1411680:intron | 55.0% |
| CCACCTATTTCGGAACCAGG+GGG | - | tig0023826:39639-39658 | Msa1411680:CDS | 55.0% | |
| CATTTAACCGGATGGACCCG+GGG | - | tig0023826:39963-39982 | Msa1411680:intron | 55.0% | |
| ATTTAACCGGATGGACCCGG+GGG | - | tig0023826:39964-39983 | Msa1411680:intron | 55.0% | |
| !! | TCAGGGTGCTGTCTCACAGT+AGG | + | tig0023826:41054-41073 | None:intergenic | 55.0% |
| CCCCCTGGTTCCGAAATAGG+TGG | + | tig0023826:39642-39661 | None:intergenic | 60.0% | |
| GTTTCTCCCCCGGGTCCATC+CGG | + | tig0023826:39973-39992 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023826 | gene | 38825 | 41334 | 38825 | ID=Msa1411680;Name=Msa1411680 |
| tig0023826 | mRNA | 38825 | 41334 | 38825 | ID=Msa1411680-mRNA-1;Parent=Msa1411680;Name=Msa1411680-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|0.83|0.71|7|0|346 |
| tig0023826 | exon | 40997 | 41334 | 40997 | ID=Msa1411680-mRNA-1:exon:20270;Parent=Msa1411680-mRNA-1 |
| tig0023826 | exon | 40630 | 40726 | 40630 | ID=Msa1411680-mRNA-1:exon:20269;Parent=Msa1411680-mRNA-1 |
| tig0023826 | exon | 40355 | 40529 | 40355 | ID=Msa1411680-mRNA-1:exon:20268;Parent=Msa1411680-mRNA-1 |
| tig0023826 | exon | 40141 | 40199 | 40141 | ID=Msa1411680-mRNA-1:exon:20267;Parent=Msa1411680-mRNA-1 |
| tig0023826 | exon | 39638 | 39883 | 39638 | ID=Msa1411680-mRNA-1:exon:20266;Parent=Msa1411680-mRNA-1 |
| tig0023826 | exon | 39266 | 39306 | 39266 | ID=Msa1411680-mRNA-1:exon:20265;Parent=Msa1411680-mRNA-1 |
| tig0023826 | exon | 38825 | 38906 | 38825 | ID=Msa1411680-mRNA-1:exon:20264;Parent=Msa1411680-mRNA-1 |
| tig0023826 | CDS | 40997 | 41334 | 40997 | ID=Msa1411680-mRNA-1:cds;Parent=Msa1411680-mRNA-1 |
| tig0023826 | CDS | 40630 | 40726 | 40630 | ID=Msa1411680-mRNA-1:cds;Parent=Msa1411680-mRNA-1 |
| tig0023826 | CDS | 40355 | 40529 | 40355 | ID=Msa1411680-mRNA-1:cds;Parent=Msa1411680-mRNA-1 |
| tig0023826 | CDS | 40141 | 40199 | 40141 | ID=Msa1411680-mRNA-1:cds;Parent=Msa1411680-mRNA-1 |
| tig0023826 | CDS | 39638 | 39883 | 39638 | ID=Msa1411680-mRNA-1:cds;Parent=Msa1411680-mRNA-1 |
| tig0023826 | CDS | 39266 | 39306 | 39266 | ID=Msa1411680-mRNA-1:cds;Parent=Msa1411680-mRNA-1 |
| tig0023826 | CDS | 38825 | 38906 | 38825 | ID=Msa1411680-mRNA-1:cds;Parent=Msa1411680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
