AlfalfaGEDB | Msa1412690

M. sativa cultivar zhongmu-4 / Msa1412690

KEGG: K08065|K14799
GO: GO:0000976 GO:0000981 GO:0001067 GO:0001654 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0007423 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010720 GO:0010941 GO:0016070 GO:0016602 GO:0018130 GO:0019216 GO:0019218 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0022008 GO:0022603 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043408 GO:0043410 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0044877 GO:0045540 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0045676 GO:0045678 GO:0045893 GO:0045935 GO:0045937 GO:0046483 GO:0046532 GO:0046534 GO:0046890 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048699 GO:0048731 GO:0048749 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050810 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0060548 GO:0062012 GO:0065007 GO:0070013 GO:0070491 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090181 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0106118 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1990823 GO:1990830 GO:1990837 GO:2000026 GO:2000027 GO:2000112 GO:2001141
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1412690	sp\|O82248\|NFYB5_ARATH	72.277	101	24	2	8	105	46	145	1.85e-48	155

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1412690	G7JKC3	89.815	108	7	2	14	118	23	129	2.08e-63	198

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TFs/TRs:

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Gene ID	Type	Classification
Msa1412690	TF	NF-YB

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1412690	MtrunA17_Chr2g0296321	81.308	107	14	3	14	117	67	170	2.59e-55	172
Msa1412690	MtrunA17_Chr4g0067091	90.217	92	5	2	14	102	23	113	1.65e-54	169
Msa1412690	MtrunA17_Chr1g0195851	77.895	95	17	2	14	105	37	130	2.10e-50	158
Msa1412690	MtrunA17_Chr2g0290491	60.185	108	39	2	14	118	18	124	1.13e-41	135
Msa1412690	MtrunA17_Chr4g0076321	66.316	95	28	2	14	105	20	113	1.50e-41	134
Msa1412690	MtrunA17_Chr1g0191981	68.085	94	26	2	15	105	6	98	3.45e-41	132
Msa1412690	MtrunA17_Chr3g0102351	63.542	96	31	2	14	106	28	122	3.05e-40	132
Msa1412690	MtrunA17_Chr1g0185911	67.778	90	25	2	14	100	30	118	7.54e-40	130
Msa1412690	MtrunA17_Chr5g0446491	61.386	101	35	2	9	106	19	118	1.00e-39	130
Msa1412690	MtrunA17_Chr7g0263601	64.130	92	29	2	14	102	27	117	3.15e-39	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1412690	AT2G47810.1	72.277	101	24	2	8	105	46	145	1.88e-49	155
Msa1412690	AT1G09030.1	69.792	96	25	2	14	106	4	98	7.78e-44	140
Msa1412690	AT5G47640.1	66.337	101	30	2	9	106	23	122	7.65e-42	136
Msa1412690	AT4G14540.1	62.745	102	34	2	11	109	19	119	1.20e-41	135
Msa1412690	AT3G53340.3	60.952	105	37	2	8	109	24	127	1.67e-41	134
Msa1412690	AT3G53340.2	60.952	105	37	2	8	109	24	127	1.67e-41	134
Msa1412690	AT3G53340.5	63.265	98	32	2	8	102	24	120	5.49e-40	131
Msa1412690	AT3G53340.1	63.265	98	32	2	8	102	24	120	5.49e-40	131
Msa1412690	AT2G38880.3	67.391	92	26	2	14	102	22	112	5.74e-40	130
Msa1412690	AT2G38880.2	67.391	92	26	2	14	102	22	112	7.78e-40	130

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Find 22 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTAATAATATTCAAAATAG+AGG	0.455896	tig0023943:-24554	Msa1412690:CDS
ACTCTTGCATTGTTTCCTTT+GGG	0.333372	tig0023943:+24771	None:intergenic
ATCCTCCCAACATTTGCAAT+TGG	0.423560	tig0023943:+24827	None:intergenic
ATGATATATGTTGGGCTTTG+GGG	0.541154	tig0023943:-24664	Msa1412690:CDS
ATGGTGACGATGATATATGT+TGG	0.624511	tig0023943:-24673	Msa1412690:CDS
CACTCTTGCATTGTTTCCTT+TGG	0.194156	tig0023943:+24770	None:intergenic
CAGAGAAATGCAGGAAGGAA+AGG	0.518431	tig0023943:-24709	Msa1412690:CDS
CGATGATATATGTTGGGCTT+TGG	0.361762	tig0023943:-24666	Msa1412690:CDS
CGCATCAGAGAAATGCAGGA+AGG	0.623973	tig0023943:-24714	Msa1412690:CDS
GAAAGGAGAAAGACAGTGAA+TGG	0.488041	tig0023943:-24692	Msa1412690:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTAATAACGTTGAAAACGG+AGG	-	tig0023943:24561-24580	Msa1412690:CDS	30.0%
TTGTTACCAATTGCAAATGT+TGG	-	tig0023943:24595-24614	Msa1412690:CDS	30.0%
TGTTACCAATTGCAAATGTT+GGG	-	tig0023943:24596-24615	Msa1412690:CDS	30.0%
GCATAGATATAGAGAATTAG+AGG	-	tig0023943:24831-24850	Msa1412690:CDS	30.0%
ACAGAATGCAAAAATCCCAA+AGG	-	tig0023943:24642-24661	Msa1412690:CDS	35.0%
ACTCTTGCATTGTTTCCTTT+GGG	+	tig0023943:24660-24679	None:intergenic	35.0%
GATGATATATGTTGGGCTTT+GGG	-	tig0023943:24763-24782	Msa1412690:CDS	35.0%
ATGATATATGTTGGGCTTTG+GGG	-	tig0023943:24764-24783	Msa1412690:CDS	35.0%
TACCAATTGCAAATGTTGGG+AGG	-	tig0023943:24599-24618	Msa1412690:CDS	40.0%
ATCCTCCCAACATTTGCAAT+TGG	+	tig0023943:24604-24623	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023943	gene	24547	24903	24547	ID=Msa1412690;Name=Msa1412690
tig0023943	mRNA	24547	24903	24547	ID=Msa1412690-mRNA-1;Parent=Msa1412690;Name=Msa1412690-mRNA-1;_AED=0.02;_eAED=0.08;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|118
tig0023943	exon	24547	24903	24547	ID=Msa1412690-mRNA-1:exon:20767;Parent=Msa1412690-mRNA-1
tig0023943	CDS	24547	24903	24547	ID=Msa1412690-mRNA-1:cds;Parent=Msa1412690-mRNA-1

Gene Sequence	>Msa1412690 TTGGAGGAAGTTCCTTTAATAACGTTGAAAACGGAGGCACAAGATAGGTTGTTACCAATTGCAAATGTTGGGAGGATAATGAAGCAGATATTACCACAGAATGCAAAAATCCCAAAGGAAACAATGCAAGAGTGTGTGTCAGAGTTTATAAGCTTTGTGACAAGTGACGCATCAGAGAAATGCAGGAAGGAAAGGAGAAAGACAGTGAATGGTGACGATGATATATGTTGGGCTTTGGGGACACTTGGTTTTGATGATTATGCTGAACAAATAAGAAAGTATTTGCATAGATATAGAGAATTAGAGGTAGAAAGAACACCAACTACTACTAATAATATTCAAAATAGAGGAAATTAA
Protein sequence	>Msa1412690 LEEVPLITLKTEAQDRLLPIANVGRIMKQILPQNAKIPKETMQECVSEFISFVTSDASEKCRKERRKTVNGDDDICWALGTLGFDDYAEQIRKYLHRYRELEVERTPTTTNNIQNRGN*