AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1414150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414150 MtrunA17_Chr4g0025061 72.337 629 73 8 1 546 1 611 0.0 800
Msa1414150 MtrunA17_Chr4g0025051 67.818 550 115 7 23 517 25 567 0.0 634
Msa1414150 MtrunA17_Chr4g0024391 69.978 463 108 6 106 546 35 488 0.0 572
Msa1414150 MtrunA17_Chr2g0322391 43.860 513 216 18 44 523 118 591 4.72e-102 320
Msa1414150 MtrunA17_Chr4g0075201 38.330 467 228 15 33 482 41 464 1.99e-75 248
Msa1414150 MtrunA17_Chr2g0288871 36.240 516 228 15 31 495 65 530 9.11e-73 242
Msa1414150 MtrunA17_Chr3g0099641 47.059 238 96 5 263 494 231 444 2.09e-63 215
Msa1414150 MtrunA17_Chr7g0270831 45.850 253 103 6 268 519 201 420 8.76e-57 196
Msa1414150 MtrunA17_Chr2g0302391 48.529 204 90 5 268 459 196 396 1.14e-47 172
Msa1414150 MtrunA17_Chr7g0216891 51.613 124 54 1 240 357 170 293 5.53e-37 145
Msa1414150 MtrunA17_Chr4g0051181 37.453 267 135 6 268 509 228 487 4.64e-36 140
Msa1414150 MtrunA17_Chr4g0060271 44.503 191 75 4 244 403 198 388 6.92e-33 133
Msa1414150 MtrunA17_Chr4g0024401 54.955 111 23 2 16 102 8 115 3.18e-28 109
Msa1414150 MtrunA17_Chr5g0418191 50.515 97 43 2 253 345 286 381 2.25e-24 105
Msa1414150 MtrunA17_Chr5g0418191 37.037 108 64 3 284 391 152 255 4.23e-12 68.6
Msa1414150 MtrunA17_Chr7g0218081 47.959 98 50 1 259 356 386 482 3.12e-24 106
Msa1414150 MtrunA17_Chr3g0101131 44.037 109 57 2 256 361 388 495 4.24e-24 106
Msa1414150 MtrunA17_Chr5g0445311 55.000 80 35 1 266 345 347 425 9.87e-24 105
Msa1414150 MtrunA17_Chr5g0432161 42.222 135 69 3 215 345 353 482 2.05e-23 104
Msa1414150 MtrunA17_Chr5g0432161 48.333 60 29 2 284 343 245 302 8.97e-11 64.7
Msa1414150 MtrunA17_Chr4g0042831 51.852 81 38 1 265 345 260 339 9.16e-23 100
Msa1414150 MtrunA17_Chr4g0001361 35.099 151 74 4 260 410 139 265 9.17e-23 99.4
Msa1414150 MtrunA17_Chr3g0079691 54.321 81 36 1 265 345 477 556 1.17e-22 102
Msa1414150 MtrunA17_Chr3g0079691 46.875 64 32 2 284 347 281 342 9.20e-12 67.8
Msa1414150 MtrunA17_Chr3g0106491 37.415 147 84 4 202 344 283 425 2.30e-22 100
Msa1414150 MtrunA17_Chr3g0106491 40.230 87 46 3 261 347 180 260 4.26e-12 68.6
Msa1414150 MtrunA17_Chr7g0243891 54.321 81 36 1 265 345 356 435 7.59e-22 99.4
Msa1414150 MtrunA17_Chr5g0419241 67.925 53 17 0 261 313 55 107 8.27e-22 90.5
Msa1414150 MtrunA17_Chr4g0004911 53.165 79 36 1 265 343 318 395 1.06e-21 98.6
Msa1414150 MtrunA17_Chr4g0004911 41.860 86 43 3 267 350 170 250 7.22e-12 67.8
Msa1414150 MtrunA17_Chr7g0249301 53.947 76 34 1 270 345 279 353 1.92e-21 96.7
Msa1414150 MtrunA17_Chr7g0249311 50.617 81 39 1 265 345 374 453 3.68e-21 97.8
Msa1414150 MtrunA17_Chr5g0447701 51.807 83 38 2 264 345 232 313 7.00e-21 95.1
Msa1414150 MtrunA17_Chr7g0270191 44.681 94 47 2 268 361 130 218 1.78e-20 92.0
Msa1414150 MtrunA17_Chr1g0150271 36.290 124 64 4 234 343 39 161 1.81e-20 91.3
Msa1414150 MtrunA17_Chr3g0136961 59.322 59 24 0 282 340 137 195 1.82e-20 92.0
Msa1414150 MtrunA17_Chr4g0051881 40.741 108 63 1 270 377 165 271 2.58e-20 92.4
Msa1414150 MtrunA17_Chr2g0333851 48.718 78 38 1 269 344 153 230 5.47e-20 91.3
Msa1414150 MtrunA17_Chr7g0263531 42.857 98 45 2 246 343 334 420 2.25e-19 90.9
Msa1414150 MtrunA17_Chr7g0263531 43.836 73 39 2 284 356 190 260 1.35e-11 67.0
Msa1414150 MtrunA17_Chr1g0150281 43.478 92 52 0 268 359 125 216 2.33e-19 88.6
Msa1414150 MtrunA17_Chr1g0147881 55.224 67 30 0 284 350 263 329 4.27e-19 89.0
Msa1414150 MtrunA17_Chr2g0294231 48.718 78 39 1 270 347 190 266 4.38e-19 89.4
Msa1414150 MtrunA17_Chr1g0150801 51.351 74 35 1 268 341 87 159 5.39e-19 84.3
Msa1414150 MtrunA17_Chr8g0386241 36.697 109 68 1 241 349 61 168 8.46e-19 84.3
Msa1414150 MtrunA17_Chr4g0053281 56.452 62 27 0 284 345 267 328 1.02e-18 87.8
Msa1414150 MtrunA17_Chr7g0224801 47.727 88 38 2 273 360 83 162 1.68e-18 83.2
Msa1414150 MtrunA17_Chr1g0194481 47.436 78 40 1 270 347 145 221 2.63e-18 86.3
Msa1414150 MtrunA17_Chr8g0379461 48.000 75 34 1 283 357 76 145 4.66e-18 84.0
Msa1414150 MtrunA17_Chr5g0401821 56.667 60 26 0 283 342 199 258 4.83e-18 84.3
Msa1414150 MtrunA17_Chr7g0270051 50.746 67 33 0 279 345 49 115 8.95e-18 83.6
Msa1414150 MtrunA17_Chr2g0293481 41.935 93 47 1 268 353 245 337 1.43e-17 85.9
Msa1414150 MtrunA17_Chr5g0443131 47.436 78 40 1 270 347 144 220 1.45e-17 84.0
Msa1414150 MtrunA17_Chr7g0248721 45.263 95 47 3 270 364 128 217 1.75e-17 81.6
Msa1414150 MtrunA17_Chr1g0184691 56.140 57 25 0 284 340 294 350 1.86e-17 84.3
Msa1414150 MtrunA17_Chr4g0074001 32.903 155 79 3 193 347 293 422 2.05e-17 85.5
Msa1414150 MtrunA17_Chr2g0289181 45.455 77 42 0 278 354 9 85 3.10e-17 81.3
Msa1414150 MtrunA17_Chr8g0335811 48.101 79 40 1 262 340 133 210 4.16e-17 80.9
Msa1414150 MtrunA17_Chr2g0319961 34.783 138 74 3 215 352 28 149 5.47e-17 81.3
Msa1414150 MtrunA17_Chr2g0284321 50.820 61 30 0 283 343 35 95 8.69e-17 79.7
Msa1414150 MtrunA17_Chr4g0068541 44.304 79 43 1 269 347 194 271 1.18e-16 82.4
Msa1414150 MtrunA17_Chr3g0129361 42.391 92 51 2 270 361 131 220 1.42e-16 79.0
Msa1414150 MtrunA17_Chr1g0188941 50.000 66 32 1 278 343 46 110 1.61e-16 75.9
Msa1414150 MtrunA17_Chr7g0248691 46.667 75 40 0 279 353 150 224 1.64e-16 80.9
Msa1414150 MtrunA17_Chr8g0383251 34.559 136 82 5 214 346 39 170 1.85e-16 77.8
Msa1414150 MtrunA17_Chr8g0348311 46.667 75 40 0 279 353 151 225 4.82e-16 79.7
Msa1414150 MtrunA17_Chr8g0387501 44.444 72 40 0 282 353 128 199 5.21e-16 78.6
Msa1414150 MtrunA17_Chr4g0071521 53.448 58 27 0 283 340 245 302 6.59e-16 79.0
Msa1414150 MtrunA17_Chr5g0418781 46.154 78 41 1 263 340 104 180 1.17e-15 77.4
Msa1414150 MtrunA17_Chr3g0129321 46.667 75 39 1 270 344 105 178 7.90e-15 73.6
Msa1414150 MtrunA17_Chr8g0383351 38.000 100 60 2 242 340 118 216 7.96e-15 74.3
Msa1414150 MtrunA17_Chr1g0202461 41.935 93 52 1 281 373 259 349 1.74e-14 75.5
Msa1414150 MtrunA17_Chr1g0189391 48.611 72 35 2 270 340 84 154 4.08e-14 73.9
Msa1414150 MtrunA17_Chr6g0485431 47.500 80 40 2 270 348 141 219 6.12e-14 73.6
Msa1414150 MtrunA17_Chr7g0228941 42.029 69 39 1 272 340 42 109 8.93e-14 68.2
Msa1414150 MtrunA17_Chr3g0139021 42.029 69 39 1 272 340 304 371 1.64e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414150 AT4G04450.1 42.022 445 205 14 77 494 85 503 2.92e-81 264
Msa1414150 AT4G04450.2 41.609 435 201 14 87 494 1 409 7.25e-78 253
Msa1414150 AT1G62300.1 39.827 462 210 18 78 510 130 552 1.73e-68 231
Msa1414150 AT4G22070.4 55.645 248 86 7 262 494 276 514 1.10e-61 213
Msa1414150 AT4G22070.3 55.645 248 86 7 262 494 276 514 1.10e-61 213
Msa1414150 AT4G22070.2 55.645 248 86 7 262 494 276 514 1.10e-61 213
Msa1414150 AT4G22070.1 55.645 248 86 7 262 494 276 514 1.10e-61 213
Msa1414150 AT4G01720.1 43.581 296 124 10 217 491 170 443 1.00e-46 171
Msa1414150 AT5G15130.2 36.531 271 121 7 263 495 165 422 1.44e-38 149
Msa1414150 AT5G15130.1 36.531 271 121 7 263 495 207 464 1.51e-38 149
Msa1414150 AT1G68150.1 62.887 97 36 0 268 364 220 316 2.78e-38 145
Msa1414150 AT1G69810.2 44.318 176 87 5 237 411 103 268 3.60e-35 135
Msa1414150 AT1G69810.1 44.318 176 87 5 237 411 161 326 5.10e-35 136
Msa1414150 AT1G18860.1 46.061 165 80 3 266 421 222 386 1.17e-33 135
Msa1414150 AT2G03340.1 44.828 116 54 2 230 345 371 476 3.48e-24 106
Msa1414150 AT2G03340.1 51.667 60 27 2 284 343 251 308 1.33e-11 67.4
Msa1414150 AT1G13960.2 55.696 79 34 1 265 343 238 315 5.55e-24 103
Msa1414150 AT1G13960.2 47.222 72 36 2 284 355 77 146 8.56e-12 67.4
Msa1414150 AT1G13960.1 55.696 79 34 1 265 343 391 468 6.74e-24 105
Msa1414150 AT1G13960.1 47.222 72 36 2 284 355 230 299 6.79e-12 68.6
Msa1414150 AT4G26640.5 52.500 80 37 1 266 345 188 266 7.54e-24 103
Msa1414150 AT4G26640.6 52.500 80 37 1 266 345 188 266 7.54e-24 103
Msa1414150 AT4G26640.4 52.500 80 37 1 266 345 188 266 7.54e-24 103
Msa1414150 AT4G26640.3 52.500 80 37 1 266 345 188 266 7.54e-24 103
Msa1414150 AT2G38470.1 54.321 81 36 1 265 345 344 423 1.35e-23 105
Msa1414150 AT2G38470.1 38.462 91 54 2 278 368 179 267 5.40e-11 65.5
Msa1414150 AT4G26640.7 52.500 80 37 1 266 345 324 402 1.99e-23 104
Msa1414150 AT4G26640.1 52.500 80 37 1 266 345 292 370 2.03e-23 103
Msa1414150 AT4G26640.2 52.500 80 37 1 266 345 364 442 2.52e-23 104
Msa1414150 AT2G04880.2 45.055 91 49 1 253 343 253 342 7.61e-22 99.0
Msa1414150 AT2G04880.2 49.275 69 31 3 279 346 107 172 6.04e-12 68.6
Msa1414150 AT5G56270.1 53.086 81 37 1 265 345 469 548 8.50e-22 100
Msa1414150 AT2G04880.1 45.055 91 49 1 253 343 277 366 1.10e-21 99.0
Msa1414150 AT2G04880.1 49.275 69 31 3 279 346 107 172 6.73e-12 68.6
Msa1414150 AT3G01080.2 48.837 86 43 1 258 343 319 403 1.48e-21 98.2
Msa1414150 AT3G01080.1 48.837 86 43 1 258 343 281 365 1.72e-21 97.8
Msa1414150 AT4G31800.2 43.810 105 54 1 262 361 85 189 1.98e-21 94.4
Msa1414150 AT4G31800.1 43.810 105 54 1 262 361 150 254 2.91e-21 95.1
Msa1414150 AT5G07100.2 48.235 85 43 1 263 347 121 204 6.36e-21 92.0
Msa1414150 AT5G07100.4 48.235 85 43 1 263 347 121 204 6.36e-21 92.0
Msa1414150 AT5G07100.5 48.235 85 43 1 263 347 121 204 6.36e-21 92.0
Msa1414150 AT5G07100.3 48.235 85 43 1 263 347 121 204 6.36e-21 92.0
Msa1414150 AT5G07100.1 48.235 85 43 1 263 347 214 297 1.18e-20 93.2
Msa1414150 AT1G80840.1 31.915 141 88 2 210 344 69 207 1.25e-20 93.2
Msa1414150 AT5G41570.1 45.455 99 49 2 270 368 85 178 1.52e-20 89.7
Msa1414150 AT1G29860.1 50.000 80 39 1 268 347 121 199 2.53e-20 91.7
Msa1414150 AT1G64000.1 45.833 96 47 2 265 360 96 186 3.07e-20 89.4
Msa1414150 AT2G25000.3 40.385 104 62 0 243 346 85 188 5.25e-20 90.1
Msa1414150 AT2G25000.2 40.385 104 62 0 243 346 63 166 5.55e-20 89.7
Msa1414150 AT2G25000.4 40.385 104 62 0 243 346 63 166 5.55e-20 89.7
Msa1414150 AT4G18170.1 43.000 100 56 1 270 369 159 257 5.76e-20 91.7
Msa1414150 AT2G25000.1 40.385 104 62 0 243 346 106 209 9.52e-20 89.7
Msa1414150 AT5G26170.1 52.778 72 33 1 269 340 99 169 1.03e-19 87.0
Msa1414150 AT2G30250.1 46.512 86 45 1 262 347 307 391 1.90e-19 91.3
Msa1414150 AT5G46350.1 52.703 74 34 1 270 343 170 242 3.36e-19 89.4
Msa1414150 AT2G23320.1 59.322 59 24 0 284 342 241 299 4.57e-19 89.0
Msa1414150 AT5G49520.1 46.250 80 42 1 268 347 206 284 4.91e-19 90.1
Msa1414150 AT2G30590.1 57.812 64 26 1 284 346 314 377 5.78e-19 89.4
Msa1414150 AT1G29280.1 50.000 70 35 0 274 343 65 134 7.19e-19 87.0
Msa1414150 AT4G30935.1 38.710 124 74 2 251 373 299 421 7.69e-19 90.1
Msa1414150 AT5G13080.1 52.055 73 34 1 270 342 54 125 1.36e-18 83.2
Msa1414150 AT4G24240.1 56.667 60 26 0 283 342 281 340 2.55e-18 87.0
Msa1414150 AT1G55600.1 48.684 76 38 1 270 345 294 368 2.76e-18 88.6
Msa1414150 AT4G26440.1 51.316 76 36 1 270 345 359 433 3.14e-18 88.6
Msa1414150 AT5G28650.1 60.377 53 21 0 288 340 267 319 1.55e-17 84.3
Msa1414150 AT3G58710.2 46.575 73 39 0 274 346 61 133 1.62e-17 83.2
Msa1414150 AT3G58710.1 46.575 73 39 0 274 346 62 134 1.63e-17 83.6
Msa1414150 AT5G64810.1 46.809 94 46 2 250 340 74 166 1.91e-17 81.3
Msa1414150 AT3G01970.1 51.389 72 34 1 269 340 51 121 2.19e-17 79.7
Msa1414150 AT2G44745.1 39.286 112 63 3 232 340 92 201 2.40e-17 81.6
Msa1414150 AT3G62340.1 52.703 74 34 1 270 343 105 177 3.33e-17 82.4
Msa1414150 AT3G04670.1 57.895 57 24 0 284 340 263 319 3.34e-17 83.6
Msa1414150 AT2G47260.1 45.783 83 44 1 268 350 159 240 3.65e-17 83.6
Msa1414150 AT4G01250.1 46.429 84 43 1 270 353 117 198 4.06e-17 82.8
Msa1414150 AT4G31550.1 57.895 57 24 0 284 340 247 303 4.39e-17 83.2
Msa1414150 AT4G31550.2 57.895 57 24 0 284 340 246 302 4.46e-17 83.2
Msa1414150 AT2G24570.1 57.895 57 24 0 284 340 244 300 5.73e-17 82.8
Msa1414150 AT5G52830.1 45.455 77 42 0 277 353 159 235 5.73e-17 83.2
Msa1414150 AT2G46130.1 47.619 84 42 2 259 341 5 87 8.20e-17 77.0
Msa1414150 AT2G34830.1 43.011 93 46 1 265 350 190 282 8.99e-17 83.2
Msa1414150 AT2G34830.2 43.011 93 46 1 265 350 199 291 1.08e-16 83.2
Msa1414150 AT1G30650.1 43.011 93 46 1 265 350 192 284 1.09e-16 83.2
Msa1414150 AT4G23550.1 44.872 78 43 0 278 355 135 212 2.99e-16 80.5
Msa1414150 AT5G45050.2 26.337 243 160 6 211 446 1082 1312 8.41e-16 81.6
Msa1414150 AT5G45050.1 26.337 243 160 6 211 446 1110 1340 8.69e-16 81.6
Msa1414150 AT5G45050.4 26.337 243 160 6 211 446 971 1201 8.77e-16 81.6
Msa1414150 AT4G39410.1 50.704 71 34 1 270 340 210 279 1.30e-15 78.2
Msa1414150 AT2G37260.2 53.846 65 29 1 278 342 262 325 2.48e-15 78.2
Msa1414150 AT2G37260.2 48.529 68 28 3 284 346 84 149 1.25e-11 66.6
Msa1414150 AT1G69310.4 44.000 75 41 1 266 340 130 203 2.54e-15 77.0
Msa1414150 AT1G69310.2 44.000 75 41 1 266 340 130 203 2.54e-15 77.0
Msa1414150 AT1G69310.1 44.000 75 41 1 266 340 130 203 2.54e-15 77.0
Msa1414150 AT2G37260.3 53.846 65 29 1 278 342 264 327 2.55e-15 78.2
Msa1414150 AT2G37260.3 48.529 68 28 3 284 346 86 151 1.22e-11 67.0
Msa1414150 AT2G37260.1 53.846 65 29 1 278 342 344 407 3.38e-15 78.6
Msa1414150 AT2G37260.1 48.529 68 28 3 284 346 166 231 1.25e-11 67.4
Msa1414150 AT2G46130.2 45.238 84 40 3 259 341 5 83 4.99e-13 65.9
Msa1414150 AT2G21900.1 42.029 69 39 1 278 346 104 171 5.34e-13 68.6
Msa1414150 AT5G45260.1 31.847 157 87 4 213 357 1136 1284 4.92e-12 69.7
Msa1414150 AT4G31800.3 48.438 64 28 1 262 320 150 213 7.17e-12 66.2

Find 93 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGTTACACCATCTTTAT+TGG 0.095497 tig0024090:-78716 Msa1414150:CDS
CCAAAACTCTGAGGGATTAA+AGG 0.176833 tig0024090:+75354 None:intergenic
GACAAAGCTGCAGGAATATT+TGG 0.214770 tig0024090:+75177 None:intergenic
GTTCTCTTCTCTTCTGAATT+AGG 0.215204 tig0024090:+78448 None:intergenic
GCTGCTATTACATCCATTAT+TGG 0.245842 tig0024090:-75153 Msa1414150:CDS
TAAAGTTTAGGTCTTGTAAT+TGG 0.259816 tig0024090:+74962 None:intergenic
CCTTTAATCCCTCAGAGTTT+TGG 0.262834 tig0024090:-75354 Msa1414150:CDS
GGGAAAGAGTTGTTATTAAC+TGG 0.286280 tig0024090:+78948 None:intergenic
ATTGTTTGAGCAGTAATATT+TGG 0.291797 tig0024090:+75222 None:intergenic
GCGTTCCTTTGTGGAGTATT+TGG 0.301041 tig0024090:+75393 None:intergenic
CGTAAGGGTAAGAAAGTTAA+AGG 0.311737 tig0024090:-77099 Msa1414150:CDS
GATAAGGTTAAGGAAGTTAA+AGG 0.318235 tig0024090:-76859 Msa1414150:CDS
GATAAGGTTAAGGAAGTTAA+AGG 0.335137 tig0024090:-76979 Msa1414150:intron
AGCTGACCCTTCACAAATAT+TGG 0.335185 tig0024090:-75250 Msa1414150:CDS
AGAAGAAACTTACATGCTTT+CGG 0.356423 tig0024090:+76325 None:intergenic
GGATGTCAATGGAGAAAGTA+TGG 0.356478 tig0024090:-76420 Msa1414150:CDS
CTACTAGTATTGATAGTAAT+AGG 0.368547 tig0024090:+78502 None:intergenic
AGAGAAGAGAACTAAGAGTA+TGG 0.375742 tig0024090:-78437 Msa1414150:CDS
CTGCAGCGATAATAAGCTTT+AGG 0.381386 tig0024090:+76369 None:intergenic
AACTGATTTGCGTTCCTTTG+TGG 0.385254 tig0024090:+75384 None:intergenic
AAAAGGAAATTTGATGATGC+TGG 0.391734 tig0024090:-76892 Msa1414150:CDS
GCTGCTGATAATAATAATAA+TGG 0.393320 tig0024090:-75102 Msa1414150:CDS
GCCATTTCTTTAGCTGCTGC+AGG 0.395885 tig0024090:+75588 None:intergenic
TCAATTGTAATAGTTGGATA+TGG 0.399033 tig0024090:+75429 None:intergenic
CTTTAGCTGCTGCAGGTAAA+GGG 0.402829 tig0024090:+75595 None:intergenic
TCTTTAGCTGCTGCAGGTAA+AGG 0.405534 tig0024090:+75594 None:intergenic
TAACATCCTCATTCTTACTT+AGG 0.406214 tig0024090:+76623 None:intergenic
GCAGCAGCAGTGTTGTTGTT+TGG 0.408470 tig0024090:+75120 None:intergenic
CTTTAACTTTCTTACCCTTA+CGG 0.409546 tig0024090:+77100 None:intergenic
GCTACCATTGCTATTTCCTT+CGG 0.410299 tig0024090:+75068 None:intergenic
TCAAGGTTGTTAGTATCATC+AGG 0.414586 tig0024090:+78927 None:intergenic
TGATGGGAAGGAACGAAATC+AGG 0.420611 tig0024090:-74989 Msa1414150:CDS
GTGTAATCAATTGTAATAGT+TGG 0.425606 tig0024090:+75423 None:intergenic
AACTTACATGCTTTCGGACT+GGG 0.430854 tig0024090:+76331 None:intergenic
AAAATGAGAATTAAGAATGA+TGG 0.434196 tig0024090:-76925 Msa1414150:CDS
TGGCTGAGTATCACCAATAA+TGG 0.440113 tig0024090:+75140 None:intergenic
GTATGAATATGATCATTGTC+AGG 0.450321 tig0024090:+78736 None:intergenic
ACCTGCAGCAGCTAAAGAAA+TGG 0.455287 tig0024090:-75589 Msa1414150:CDS
ATTGGCTACTGATAAGGTTA+AGG 0.459989 tig0024090:-76869 Msa1414150:CDS
AGCTTTAGTTCCAATAAAGA+TGG 0.463299 tig0024090:+78706 None:intergenic
ACATGTGGCATCAACAATGA+TGG 0.482281 tig0024090:-75006 Msa1414150:CDS
GAAATTTGATGATGCTGGAT+TGG 0.483257 tig0024090:-76887 Msa1414150:CDS
ATATGATCATTGTCAGGGAC+AGG 0.484701 tig0024090:+78742 None:intergenic
GCATCAACATCAAGCAATGA+TGG 0.494138 tig0024090:-75528 Msa1414150:CDS
TCTAGAAGTCAAGATCAGTT+AGG 0.495524 tig0024090:-76688 Msa1414150:CDS
TGCTGGATTGGCTACTGATA+AGG 0.503894 tig0024090:-76875 Msa1414150:CDS
GCTTTCGGACTGGGCAACCA+TGG 0.504496 tig0024090:+76340 None:intergenic
ATGATGGAGAATTAATGAAA+AGG 0.504955 tig0024090:-76909 Msa1414150:CDS
AAACTTACATGCTTTCGGAC+TGG 0.512195 tig0024090:+76330 None:intergenic
GAGAGTGATGCAAGACCGTA+AGG 0.513027 tig0024090:-77115 Msa1414150:CDS
GGTATTGCCAATATTTGTGA+AGG 0.514432 tig0024090:+75243 None:intergenic
TAGTAGTGATCAATCTATGA+TGG 0.520634 tig0024090:-78485 Msa1414150:CDS
CGATAATAAGCTTTAGGACA+CGG 0.531100 tig0024090:+76375 None:intergenic
GTTGTAATCACAACTTATGA+AGG 0.531127 tig0024090:-75630 Msa1414150:CDS
TTATTGAGTTAGATCACTGA+TGG 0.542017 tig0024090:-76441 Msa1414150:intron
TGGGACTAAGTTTCAACTCA+AGG 0.543159 tig0024090:+78910 None:intergenic
CTTTCGGACTGGGCAACCAT+GGG 0.546480 tig0024090:+76341 None:intergenic
AGGAATTTCCAAAACTCTGA+GGG 0.547821 tig0024090:+75346 None:intergenic
ACTTCAGAATGGTGGAGAGT+TGG 0.548067 tig0024090:-76797 Msa1414150:intron
AGTATTGATAGTAATAGGAA+TGG 0.556477 tig0024090:+78507 None:intergenic
AAAGGAAAAGAAGTGTTCAC+TGG 0.557236 tig0024090:-76841 Msa1414150:CDS
GTATTGATAGTAATAGGAAT+GGG 0.563883 tig0024090:+78508 None:intergenic
TATCGCTGCAGCACGACCCA+TGG 0.564450 tig0024090:-76357 Msa1414150:CDS
ATAGCAGCTGACAAAGCTGC+AGG 0.574982 tig0024090:+75168 None:intergenic
GAAGAGAACTAAGAGTATGG+AGG 0.575623 tig0024090:-78434 Msa1414150:intron
GATAATAAGCTTTAGGACAC+GGG 0.575823 tig0024090:+76376 None:intergenic
GATCAATCTATGATGGATGA+TGG 0.577380 tig0024090:-78478 Msa1414150:CDS
AGATCACTGATGGATGTCAA+TGG 0.579642 tig0024090:-76431 Msa1414150:CDS
AGCAACAAAATTATCACATG+TGG 0.580366 tig0024090:-75021 Msa1414150:CDS
TAGCTGCTGCAGGTAAAGGG+TGG 0.582781 tig0024090:+75598 None:intergenic
GTATTGCCAATATTTGTGAA+GGG 0.582929 tig0024090:+75244 None:intergenic
CATGTGGCATCAACAATGAT+GGG 0.583795 tig0024090:-75005 Msa1414150:CDS
TACAAATGCTGATATTGTGA+TGG 0.589604 tig0024090:-76743 Msa1414150:CDS
GATAGTCCTAAGTAAGAATG+AGG 0.591251 tig0024090:-76629 Msa1414150:CDS
TGGCATCAACAATGATGGGA+AGG 0.604261 tig0024090:-75001 Msa1414150:CDS
ATTAACTGGAACTGAAGCCA+TGG 0.605747 tig0024090:+78962 None:intergenic
TTGAGGGATCAGAGAAGCTG+AGG 0.609486 tig0024090:+75326 None:intergenic
AATATTTGGACTAGCAGCAA+TGG 0.612014 tig0024090:+75191 None:intergenic
TATGAATATGATCATTGTCA+GGG 0.613441 tig0024090:+78737 None:intergenic
GATGTCAATGGAGAAAGTAT+GGG 0.615340 tig0024090:-76419 Msa1414150:CDS
TTAAAACTTAACAGGTACAA+AGG 0.618245 tig0024090:-75671 Msa1414150:intron
TGTTAATGTTGATAATGTTG+AGG 0.619880 tig0024090:-76605 Msa1414150:CDS
AAGTCAAGATCAGTTAGGAT+CGG 0.620379 tig0024090:-76683 Msa1414150:CDS
TATGATCATTGTCAGGGACA+GGG 0.624825 tig0024090:+78743 None:intergenic
CAAGGTTGTTAGTATCATCA+GGG 0.625070 tig0024090:+78928 None:intergenic
GTCACCGAAGGAAATAGCAA+TGG 0.626521 tig0024090:-75072 Msa1414150:CDS
AATGGCAACAATGTCACCGA+AGG 0.626879 tig0024090:-75084 Msa1414150:CDS
GAGGAATTTCCAAAACTCTG+AGG 0.632072 tig0024090:+75345 None:intergenic
AGCTAGATCAGAAGAAACCA+TGG 0.635656 tig0024090:-76551 Msa1414150:intron
GGACAGAGACAACTTCATGA+TGG 0.651443 tig0024090:+78764 None:intergenic
AATCTCCAAATACTCCACAA+AGG 0.678231 tig0024090:-75398 Msa1414150:CDS
GTTGCAATACTTGAAGAACA+AGG 0.694121 tig0024090:+75468 None:intergenic
AGAGTGATGCAAGACCGTAA+GGG 0.707223 tig0024090:-77114 Msa1414150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTCTCAAATTATTAT+TGG - tig0024090:76336-76355 Msa1414150:intron 10.0%
!! AAATATAATCACATAAAAAA+CGG + tig0024090:76632-76651 None:intergenic 10.0%
!!! ATTAATTCTTTTTAGTAAAA+AGG + tig0024090:77436-77455 None:intergenic 10.0%
!! TAATTAAATTAATTATGAAG+TGG - tig0024090:78176-78195 Msa1414150:intron 10.0%
!! CGTAAAAAAAAAATAACAAT+GGG + tig0024090:75245-75264 None:intergenic 15.0%
!! ACGTAAAAAAAAAATAACAA+TGG + tig0024090:75246-75265 None:intergenic 15.0%
!!! TTTTGACTCAATAAAATTAA+AGG + tig0024090:75555-75574 None:intergenic 15.0%
!! TGTATTATACTTATAAATGT+AGG + tig0024090:75870-75889 None:intergenic 15.0%
!! TATAACATAATTATTAGTTG+TGG + tig0024090:75946-75965 None:intergenic 15.0%
!! TTTAGTAAATACATGTAATT+TGG + tig0024090:77608-77627 None:intergenic 15.0%
!! TAATACAATTAAAACTTAAC+AGG - tig0024090:78220-78239 Msa1414150:intron 15.0%
!! AGCAAAAAAAATTAAAGTTT+AGG + tig0024090:78952-78971 None:intergenic 15.0%
!! TAATTTCATTAAATTCTGCT+AGG + tig0024090:75511-75530 None:intergenic 20.0%
!!! TAATTTTATTGAGTCAAAAC+TGG - tig0024090:75556-75575 Msa1414150:CDS 20.0%
!!! AATTTTATTGAGTCAAAACT+GGG - tig0024090:75557-75576 Msa1414150:CDS 20.0%
!! AAAAAATTTAAAAGAAAGCG+AGG + tig0024090:75687-75706 None:intergenic 20.0%
!!! TTCTACTATGTTATTCTTTT+TGG - tig0024090:75705-75724 Msa1414150:intron 20.0%
!! ATATATATATGTGTGATTCT+TGG - tig0024090:75803-75822 Msa1414150:intron 20.0%
!!! TAATTTTTTTCACAAAGAAG+AGG + tig0024090:76441-76460 None:intergenic 20.0%
!! GAATATATTACAATTACATG+CGG - tig0024090:76750-76769 Msa1414150:CDS 20.0%
!! AAAATGAGAATTAAGAATGA+TGG - tig0024090:76974-76993 Msa1414150:CDS 20.0%
!!! ACATGCATATTTTAAAACAT+TGG - tig0024090:77783-77802 Msa1414150:intron 20.0%
!!! AATTTTGATTGGTTTTGATT+AGG + tig0024090:78602-78621 None:intergenic 20.0%
! TATGAATATGATCATTGTCA+GGG + tig0024090:75165-75184 None:intergenic 25.0%
! AACAATGGGATATTGAATTA+TGG + tig0024090:75231-75250 None:intergenic 25.0%
!! GTATTGATAGTAATAGGAAT+GGG + tig0024090:75394-75413 None:intergenic 25.0%
!!! AGTATTGATAGTAATAGGAA+TGG + tig0024090:75395-75414 None:intergenic 25.0%
!!! CTACTAGTATTGATAGTAAT+AGG + tig0024090:75400-75419 None:intergenic 25.0%
!!! CTATGTTATTCTTTTTGGAA+AGG - tig0024090:75710-75729 Msa1414150:intron 25.0%
! GTCATATTCATTAATTAACG+TGG + tig0024090:76038-76057 None:intergenic 25.0%
! ATTTAATTAGCGTACTATGT+CGG + tig0024090:76134-76153 None:intergenic 25.0%
! AAAATGTAACAGTTTATGTC+AGG + tig0024090:76310-76329 None:intergenic 25.0%
! CACTGACATACATATAAAAT+CGG + tig0024090:76391-76410 None:intergenic 25.0%
!! CATGTTAATAGTGTTCTAAA+AGG + tig0024090:76502-76521 None:intergenic 25.0%
! TTAGAACACTATTAACATGA+TGG - tig0024090:76503-76522 Msa1414150:intron 25.0%
! TAGAACACTATTAACATGAT+GGG - tig0024090:76504-76523 Msa1414150:intron 25.0%
! CCAACAAAATCAAAATACAT+TGG + tig0024090:76532-76551 None:intergenic 25.0%
!!! CCAATGTATTTTGATTTTGT+TGG - tig0024090:76529-76548 Msa1414150:intron 25.0%
!! AATCACATAAAAAACGGATT+TGG + tig0024090:76626-76645 None:intergenic 25.0%
!! TTCATTGAACTATTTTCAGA+TGG - tig0024090:76655-76674 Msa1414150:CDS 25.0%
! AAAGGAAAAAAAGTCTTTGA+TGG - tig0024090:76818-76837 Msa1414150:CDS 25.0%
!! ATGATGGAGAATTAATGAAA+AGG - tig0024090:76990-77009 Msa1414150:intron 25.0%
!!! TGTTAATGTTGATAATGTTG+AGG - tig0024090:77294-77313 Msa1414150:intron 25.0%
!! ACTAAAAATGTTTCTGTATG+TGG + tig0024090:77858-77877 None:intergenic 25.0%
!! TATGTTTCTATGCTAGAAAA+TGG - tig0024090:77957-77976 Msa1414150:intron 25.0%
! TAAATACATAGATTGCTGAA+TGG + tig0024090:77996-78015 None:intergenic 25.0%
! TCAAAATATGCAGTTATGTT+TGG - tig0024090:78046-78065 Msa1414150:intron 25.0%
! CAATAAACTCAAATCCAAAA+TGG - tig0024090:78136-78155 Msa1414150:intron 25.0%
! TTAAAACTTAACAGGTACAA+AGG - tig0024090:78228-78247 Msa1414150:intron 25.0%
! TCAATTGTAATAGTTGGATA+TGG + tig0024090:78473-78492 None:intergenic 25.0%
! GTGTAATCAATTGTAATAGT+TGG + tig0024090:78479-78498 None:intergenic 25.0%
!! CAAAACCAATCAAAATTTTC+TGG - tig0024090:78605-78624 Msa1414150:intron 25.0%
! ATTGTTTGAGCAGTAATATT+TGG + tig0024090:78680-78699 None:intergenic 25.0%
! GCTGCTGATAATAATAATAA+TGG - tig0024090:78797-78816 Msa1414150:CDS 25.0%
!! TGTGATAATTTTGTTGCTAT+TGG + tig0024090:78876-78895 None:intergenic 25.0%
!! TAAAGTTTAGGTCTTGTAAT+TGG + tig0024090:78940-78959 None:intergenic 25.0%
! TTTTCATTGGAACTAGGAAA+GGG + tig0024090:75046-75065 None:intergenic 30.0%
! ATTTTCATTGGAACTAGGAA+AGG + tig0024090:75047-75066 None:intergenic 30.0%
!! GTTTGATTTTCATTGGAACT+AGG + tig0024090:75052-75071 None:intergenic 30.0%
GTATGAATATGATCATTGTC+AGG + tig0024090:75166-75185 None:intergenic 30.0%
TACTGTTACACCATCTTTAT+TGG - tig0024090:75183-75202 Msa1414150:CDS 30.0%
! AGCTTTAGTTCCAATAAAGA+TGG + tig0024090:75196-75215 None:intergenic 30.0%
TAGTAGTGATCAATCTATGA+TGG - tig0024090:75414-75433 Msa1414150:CDS 30.0%
ATATATGTGTGATTCTTGGT+TGG - tig0024090:75807-75826 Msa1414150:intron 30.0%
!! CCTGAAAATTTGAGTATTGA+GGG + tig0024090:76264-76283 None:intergenic 30.0%
! CCTCAATACTCAAATTTTCA+GGG - tig0024090:76262-76281 Msa1414150:intron 30.0%
AGTTTATGTCAGGATCATAT+TGG + tig0024090:76300-76319 None:intergenic 30.0%
AGAACACTATTAACATGATG+GGG - tig0024090:76505-76524 Msa1414150:intron 30.0%
CGTTCGAATAAAACATGTTA+GGG + tig0024090:76594-76613 None:intergenic 30.0%
ACGTTCGAATAAAACATGTT+AGG + tig0024090:76595-76614 None:intergenic 30.0%
! CTTTAACTTTCTTACCCTTA+CGG + tig0024090:76802-76821 None:intergenic 30.0%
GAAATTTATGGAACTTGGAT+TGG - tig0024090:76892-76911 Msa1414150:CDS 30.0%
GATAAGGTTAAGGAAGTTAA+AGG - tig0024090:76920-76939 Msa1414150:CDS 30.0%
!! AAAAGGAAATTTGATGATGC+TGG - tig0024090:77007-77026 Msa1414150:intron 30.0%
GATAAGGTTAAGGAAGTTAA+AGG - tig0024090:76920-76939 Msa1414150:CDS 30.0%
AAGAAAAAGAGACTTCAGAA+TGG - tig0024090:77091-77110 Msa1414150:CDS 30.0%
TACAAATGCTGATATTGTGA+TGG - tig0024090:77156-77175 Msa1414150:intron 30.0%
TAACATCCTCATTCTTACTT+AGG + tig0024090:77279-77298 None:intergenic 30.0%
! ACACTTTTACATACTTACCA+TGG + tig0024090:77368-77387 None:intergenic 30.0%
TTATTGAGTTAGATCACTGA+TGG - tig0024090:77458-77477 Msa1414150:intron 30.0%
AGAAGAAACTTACATGCTTT+CGG + tig0024090:77577-77596 None:intergenic 30.0%
TAATGCGAAAGCAATCAATA+GGG + tig0024090:77648-77667 None:intergenic 30.0%
ATAATGCGAAAGCAATCAAT+AGG + tig0024090:77649-77668 None:intergenic 30.0%
!! AGAAACATAAGCTTTGAAAG+TGG + tig0024090:77946-77965 None:intergenic 30.0%
!!! CTGCATATTTTGATTTGCAA+TGG + tig0024090:78039-78058 None:intergenic 30.0%
GTTGTAATCACAACTTATGA+AGG - tig0024090:78269-78288 Msa1414150:intron 30.0%
!!! GGTTTTGATTAGGTATTTGA+GGG + tig0024090:78592-78611 None:intergenic 30.0%
!!! TGGTTTTGATTAGGTATTTG+AGG + tig0024090:78593-78612 None:intergenic 30.0%
!! GTAGTCCAGAAAATTTTGAT+TGG + tig0024090:78613-78632 None:intergenic 30.0%
GTATTGCCAATATTTGTGAA+GGG + tig0024090:78658-78677 None:intergenic 30.0%
AGCAACAAAATTATCACATG+TGG - tig0024090:78878-78897 Msa1414150:intron 30.0%
! GGGAAAGAGTTGTTATTAAC+TGG + tig0024090:74954-74973 None:intergenic 35.0%
CAAGGTTGTTAGTATCATCA+GGG + tig0024090:74974-74993 None:intergenic 35.0%
TCAAGGTTGTTAGTATCATC+AGG + tig0024090:74975-74994 None:intergenic 35.0%
ACTTAGTCCCAACAAAAACA+TGG - tig0024090:75001-75020 Msa1414150:CDS 35.0%
!! GTAGCATCCATGTTTTTGTT+GGG + tig0024090:75011-75030 None:intergenic 35.0%
!! TGTAGCATCCATGTTTTTGT+TGG + tig0024090:75012-75031 None:intergenic 35.0%
!! TGGAGAGGTTTGATTTTCAT+TGG + tig0024090:75059-75078 None:intergenic 35.0%
CTTGTTTCATGAGATGAGAT+TGG + tig0024090:75079-75098 None:intergenic 35.0%
TCATGAAACAAGAACAGAGT+TGG - tig0024090:75087-75106 Msa1414150:CDS 35.0%
!!! TTCTTTTTTCGCATACAGCT+TGG - tig0024090:75367-75386 Msa1414150:CDS 35.0%
!! GATCAATCTATGATGGATGA+TGG - tig0024090:75421-75440 Msa1414150:CDS 35.0%
GTTCTCTTCTCTTCTGAATT+AGG + tig0024090:75454-75473 None:intergenic 35.0%
AGAGAAGAGAACTAAGAGTA+TGG - tig0024090:75462-75481 Msa1414150:CDS 35.0%
TCGACACTCTTTAGATTTGA+AGG - tig0024090:75597-75616 Msa1414150:CDS 35.0%
ACCCACGTACACAAAAATAT+GGG - tig0024090:75654-75673 Msa1414150:CDS 35.0%
TTAACGTGGTAGCATATCAT+TGG + tig0024090:76024-76043 None:intergenic 35.0%
! CCCTCAATACTCAAATTTTC+AGG - tig0024090:76261-76280 Msa1414150:intron 35.0%
! CCCTGAAAATTTGAGTATTG+AGG + tig0024090:76265-76284 None:intergenic 35.0%
GATCTCACTATTACAATGCA+TGG - tig0024090:76476-76495 Msa1414150:intron 35.0%
!! ATGTTTTATTCGAACGTGAG+AGG - tig0024090:76598-76617 Msa1414150:CDS 35.0%
TTTCAGATGGCTATTCTTCA+AGG - tig0024090:76668-76687 Msa1414150:CDS 35.0%
AGAGCTTGAACAAACGAAAA+TGG - tig0024090:76691-76710 Msa1414150:CDS 35.0%
CGTAAGGGTAAGAAAGTTAA+AGG - tig0024090:76800-76819 Msa1414150:CDS 35.0%
GAGAAAAAGAGAACTGAGAA+TGG - tig0024090:76851-76870 Msa1414150:CDS 35.0%
AAAAAGAGAACTGAGAATGG+TGG - tig0024090:76854-76873 Msa1414150:CDS 35.0%
CCAAGTTCCATAAATTTCCT+TGG + tig0024090:76890-76909 None:intergenic 35.0%
CCAAGGAAATTTATGGAACT+TGG - tig0024090:76887-76906 Msa1414150:CDS 35.0%
ATTGGCTACTGATAAGGTTA+AGG - tig0024090:76910-76929 Msa1414150:CDS 35.0%
!! GAAATTTGATGATGCTGGAT+TGG - tig0024090:77012-77031 Msa1414150:intron 35.0%
ATTGGCTACTGATAAGGTTA+AGG - tig0024090:76910-76929 Msa1414150:CDS 35.0%
!! AAAGGAAAAGAAGTGTTCAC+TGG - tig0024090:77058-77077 Msa1414150:CDS 35.0%
AAAAAGAGACTTCAGAATGG+TGG - tig0024090:77094-77113 Msa1414150:CDS 35.0%
! CTAGATTTTCTCATTGACGA+GGG + tig0024090:77196-77215 None:intergenic 35.0%
! TCTAGATTTTCTCATTGACG+AGG + tig0024090:77197-77216 None:intergenic 35.0%
TCTAGAAGTCAAGATCAGTT+AGG - tig0024090:77211-77230 Msa1414150:intron 35.0%
AAGTCAAGATCAGTTAGGAT+CGG - tig0024090:77216-77235 Msa1414150:intron 35.0%
GATAGTCCTAAGTAAGAATG+AGG - tig0024090:77270-77289 Msa1414150:intron 35.0%
! GATGTCAATGGAGAAAGTAT+GGG - tig0024090:77480-77499 Msa1414150:intron 35.0%
TATGGGCAAAAACTATCGAA+AGG - tig0024090:77497-77516 Msa1414150:intron 35.0%
!! GATAATAAGCTTTAGGACAC+GGG + tig0024090:77526-77545 None:intergenic 35.0%
!! CGATAATAAGCTTTAGGACA+CGG + tig0024090:77527-77546 None:intergenic 35.0%
CATGTTTGTGACTATGATCT+AGG + tig0024090:77768-77787 None:intergenic 35.0%
TCACGTAATAAGCACATTGA+TGG + tig0024090:78096-78115 None:intergenic 35.0%
TTATTGCATTCAGCAAATCC+AGG + tig0024090:78122-78141 None:intergenic 35.0%
! TAGCTAAGTAGCTACCATTT+TGG + tig0024090:78153-78172 None:intergenic 35.0%
AAAATGGTAGCTACTTAGCT+AGG - tig0024090:78152-78171 Msa1414150:intron 35.0%
GTTGCAATACTTGAAGAACA+AGG + tig0024090:78434-78453 None:intergenic 35.0%
AATCTCCAAATACTCCACAA+AGG - tig0024090:78501-78520 Msa1414150:CDS 35.0%
AGGAATTTCCAAAACTCTGA+GGG + tig0024090:78556-78575 None:intergenic 35.0%
GGTATTGCCAATATTTGTGA+AGG + tig0024090:78659-78678 None:intergenic 35.0%
!! AATATTTGGACTAGCAGCAA+TGG + tig0024090:78711-78730 None:intergenic 35.0%
GCTGCTATTACATCCATTAT+TGG - tig0024090:78746-78765 Msa1414150:CDS 35.0%
TGGGACTAAGTTTCAACTCA+AGG + tig0024090:74992-75011 None:intergenic 40.0%
TTCATGAGATGAGATTGGAG+AGG + tig0024090:75074-75093 None:intergenic 40.0%
TATGATCATTGTCAGGGACA+GGG + tig0024090:75159-75178 None:intergenic 40.0%
ATATGATCATTGTCAGGGAC+AGG + tig0024090:75160-75179 None:intergenic 40.0%
! GAAGAGAACTAAGAGTATGG+AGG - tig0024090:75465-75484 Msa1414150:CDS 40.0%
GACCCACGTACACAAAAATA+TGG - tig0024090:75653-75672 Msa1414150:CDS 40.0%
!! GCCCATATTTTTGTGTACGT+GGG + tig0024090:75658-75677 None:intergenic 40.0%
GTACACAAAAATATGGGCCA+AGG - tig0024090:75660-75679 Msa1414150:CDS 40.0%
TTAAAAGAAAGCGAGGACCT+TGG + tig0024090:75680-75699 None:intergenic 40.0%
! TGTGTGATTCTTGGTTGGTT+TGG - tig0024090:75812-75831 Msa1414150:intron 40.0%
GGATCATATTGGTGCAATGA+CGG + tig0024090:76289-76308 None:intergenic 40.0%
!! ACTTGGATTGGCTACTGATA+AGG - tig0024090:76904-76923 Msa1414150:CDS 40.0%
AGCTAGATCAGAAGAAACCA+TGG - tig0024090:77348-77367 Msa1414150:intron 40.0%
! AGATCACTGATGGATGTCAA+TGG - tig0024090:77468-77487 Msa1414150:intron 40.0%
GGATGTCAATGGAGAAAGTA+TGG - tig0024090:77479-77498 Msa1414150:intron 40.0%
CTGCAGCGATAATAAGCTTT+AGG + tig0024090:77533-77552 None:intergenic 40.0%
AACTTACATGCTTTCGGACT+GGG + tig0024090:77571-77590 None:intergenic 40.0%
AAACTTACATGCTTTCGGAC+TGG + tig0024090:77572-77591 None:intergenic 40.0%
GATTTGATATGCCTTGCACA+TGG - tig0024090:77886-77905 Msa1414150:intron 40.0%
TTGTTATCCAACCATGTGCA+AGG + tig0024090:77900-77919 None:intergenic 40.0%
TTACGCACCTAACACATCAA+TGG - tig0024090:78013-78032 Msa1414150:intron 40.0%
ATGGTCGTTGTATCGAAGAT+TGG + tig0024090:78077-78096 None:intergenic 40.0%
GCATCAACATCAAGCAATGA+TGG - tig0024090:78371-78390 Msa1414150:intron 40.0%
!! AACTGATTTGCGTTCCTTTG+TGG + tig0024090:78518-78537 None:intergenic 40.0%
! CCAAAACTCTGAGGGATTAA+AGG + tig0024090:78548-78567 None:intergenic 40.0%
! CCTTTAATCCCTCAGAGTTT+TGG - tig0024090:78545-78564 Msa1414150:intron 40.0%
GAGGAATTTCCAAAACTCTG+AGG + tig0024090:78557-78576 None:intergenic 40.0%
AGCTGACCCTTCACAAATAT+TGG - tig0024090:78649-78668 Msa1414150:intron 40.0%
GACAAAGCTGCAGGAATATT+TGG + tig0024090:78725-78744 None:intergenic 40.0%
TGGCTGAGTATCACCAATAA+TGG + tig0024090:78762-78781 None:intergenic 40.0%
!! GCTACCATTGCTATTTCCTT+CGG + tig0024090:78834-78853 None:intergenic 40.0%
ACATGTGGCATCAACAATGA+TGG - tig0024090:78893-78912 Msa1414150:CDS 40.0%
CATGTGGCATCAACAATGAT+GGG - tig0024090:78894-78913 Msa1414150:CDS 40.0%
GGACAGAGACAACTTCATGA+TGG + tig0024090:75138-75157 None:intergenic 45.0%
! GTATGGGTGTCACACATTGA+CGG + tig0024090:75626-75645 None:intergenic 45.0%
TCAATGTGTGACACCCATAC+AGG - tig0024090:75626-75645 Msa1414150:CDS 45.0%
CAATGTGTGACACCCATACA+GGG - tig0024090:75627-75646 Msa1414150:CDS 45.0%
!! GGCCCATATTTTTGTGTACG+TGG + tig0024090:75659-75678 None:intergenic 45.0%
AGAGTGATGCAAGACCGTAA+GGG - tig0024090:76785-76804 Msa1414150:intron 45.0%
! AACTGAGAATGGTGGAGTAC+TGG - tig0024090:76862-76881 Msa1414150:CDS 45.0%
! ACTGAGAATGGTGGAGTACT+GGG - tig0024090:76863-76882 Msa1414150:CDS 45.0%
ACTGGGGCCAAGGAAATTTA+TGG - tig0024090:76880-76899 Msa1414150:CDS 45.0%
!! TGCTGGATTGGCTACTGATA+AGG - tig0024090:77024-77043 Msa1414150:intron 45.0%
! ACTTCAGAATGGTGGAGAGT+TGG - tig0024090:77102-77121 Msa1414150:CDS 45.0%
!! GTTGGTGTCAAGGCAATGTA+AGG - tig0024090:77120-77139 Msa1414150:CDS 45.0%
TGATATGCCTTGCACATGGT+TGG - tig0024090:77890-77909 Msa1414150:intron 45.0%
GCAATGGCCATTGATGTGTT+AGG + tig0024090:78023-78042 None:intergenic 45.0%
GTGCTTATTACGTGAATGCC+TGG - tig0024090:78101-78120 Msa1414150:intron 45.0%
CTTTAGCTGCTGCAGGTAAA+GGG + tig0024090:78307-78326 None:intergenic 45.0%
TCTTTAGCTGCTGCAGGTAA+AGG + tig0024090:78308-78327 None:intergenic 45.0%
ACCTGCAGCAGCTAAAGAAA+TGG - tig0024090:78310-78329 Msa1414150:intron 45.0%
! GCGTTCCTTTGTGGAGTATT+TGG + tig0024090:78509-78528 None:intergenic 45.0%
AATGGCAACAATGTCACCGA+AGG - tig0024090:78815-78834 Msa1414150:intron 45.0%
GTCACCGAAGGAAATAGCAA+TGG - tig0024090:78827-78846 Msa1414150:intron 45.0%
! TGGCATCAACAATGATGGGA+AGG - tig0024090:78898-78917 Msa1414150:CDS 45.0%
TGATGGGAAGGAACGAAATC+AGG - tig0024090:78910-78929 Msa1414150:CDS 45.0%
!!! TTTTATATTTTTCTTTTATT+TGG - tig0024090:76163-76182 Msa1414150:intron 5.0%
GCAGAAATGCACGACTCTCA+TGG + tig0024090:75911-75930 None:intergenic 50.0%
GAGAGTGATGCAAGACCGTA+AGG - tig0024090:76784-76803 Msa1414150:intron 50.0%
!! CTGAGAATGGTGGAGTACTG+GGG - tig0024090:76864-76883 Msa1414150:CDS 50.0%
!! ATGGTGGAGAGTTGGTGTCA+AGG - tig0024090:77110-77129 Msa1414150:CDS 50.0%
GCCATTTCTTTAGCTGCTGC+AGG + tig0024090:78314-78333 None:intergenic 50.0%
TTGAGGGATCAGAGAAGCTG+AGG + tig0024090:78576-78595 None:intergenic 50.0%
ATAGCAGCTGACAAAGCTGC+AGG + tig0024090:78734-78753 None:intergenic 50.0%
! GCAGCAGCAGTGTTGTTGTT+TGG + tig0024090:78782-78801 None:intergenic 50.0%
ACGTGGGTCTGTCCCTGTAT+GGG + tig0024090:75642-75661 None:intergenic 55.0%
TACGTGGGTCTGTCCCTGTA+TGG + tig0024090:75643-75662 None:intergenic 55.0%
! CTTTCGGACTGGGCAACCAT+GGG + tig0024090:77561-77580 None:intergenic 55.0%
TAGCTGCTGCAGGTAAAGGG+TGG + tig0024090:78304-78323 None:intergenic 55.0%
!! ATGGTGGAGTACTGGGGCCA+AGG - tig0024090:76870-76889 Msa1414150:CDS 60.0%
TATCGCTGCAGCACGACCCA+TGG - tig0024090:77542-77561 Msa1414150:intron 60.0%
! GCTTTCGGACTGGGCAACCA+TGG + tig0024090:77562-77581 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0024090 gene 74939 78982 74939 ID=Msa1414150;Name=Msa1414150
tig0024090 mRNA 74939 78982 74939 ID=Msa1414150-mRNA-1;Parent=Msa1414150;Name=Msa1414150-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0|0|1|0.57|0.37|8|0|565
tig0024090 exon 78886 78982 78886 ID=Msa1414150-mRNA-1:exon:21611;Parent=Msa1414150-mRNA-1
tig0024090 exon 78702 78817 78702 ID=Msa1414150-mRNA-1:exon:21610;Parent=Msa1414150-mRNA-1
tig0024090 exon 78435 78536 78435 ID=Msa1414150-mRNA-1:exon:21609;Parent=Msa1414150-mRNA-1
tig0024090 exon 77044 77145 77044 ID=Msa1414150-mRNA-1:exon:21608;Parent=Msa1414150-mRNA-1
tig0024090 exon 76798 76995 76798 ID=Msa1414150-mRNA-1:exon:21607;Parent=Msa1414150-mRNA-1
tig0024090 exon 76552 76779 76552 ID=Msa1414150-mRNA-1:exon:21606;Parent=Msa1414150-mRNA-1
tig0024090 exon 76338 76451 76338 ID=Msa1414150-mRNA-1:exon:21605;Parent=Msa1414150-mRNA-1
tig0024090 exon 74939 75679 74939 ID=Msa1414150-mRNA-1:exon:21604;Parent=Msa1414150-mRNA-1
tig0024090 CDS 78886 78982 78886 ID=Msa1414150-mRNA-1:cds;Parent=Msa1414150-mRNA-1
tig0024090 CDS 78702 78817 78702 ID=Msa1414150-mRNA-1:cds;Parent=Msa1414150-mRNA-1
tig0024090 CDS 78435 78536 78435 ID=Msa1414150-mRNA-1:cds;Parent=Msa1414150-mRNA-1
tig0024090 CDS 77044 77145 77044 ID=Msa1414150-mRNA-1:cds;Parent=Msa1414150-mRNA-1
tig0024090 CDS 76798 76995 76798 ID=Msa1414150-mRNA-1:cds;Parent=Msa1414150-mRNA-1
tig0024090 CDS 76552 76779 76552 ID=Msa1414150-mRNA-1:cds;Parent=Msa1414150-mRNA-1
tig0024090 CDS 76338 76451 76338 ID=Msa1414150-mRNA-1:cds;Parent=Msa1414150-mRNA-1
tig0024090 CDS 74939 75679 74939 ID=Msa1414150-mRNA-1:cds;Parent=Msa1414150-mRNA-1
Gene Sequence

>Msa1414150

ATGGCTTCAGTTCCAGTTAATAACAACTCTTTCCCTGATGATACTAACAACCTTGAGTTGAAACTTAGTCCCAACAAAAACATGGATGCTACACATAAGTTGGATTTCTTTGATGACAACAACAATGACCATCATGAAGTTGTCTCTGTCCCTGTCCCTGACAATGATCATATTCATACTGTTACACCATCTTTATTGGAACTAAAGCTAAGCCTTGGTCCCATTCCTATTACTATCAATACTAGTAGTGATCAATCTATGATGGATGATGGCATGTCACCTAATTCAGAAGAGAAGAGAACTAAGAGTATGGAGCGTTTCGAGAGAGTGATGCAAGACCGTAAGGGTAAGAAAGTTAAAGGAAAAAAAGTCTTTGATGGAAAATTTAAAGAGAAAAAGAGAACTGAGAATGGTGGAGTTAAGGAAGTTAAAGGACAAAAAGTTTCTGATCAAAAATTTGTAGAGAAAATGAGAATTAAGAATGATGGAGAATTAATGAAAAGGAAATTTGATGATGCTGGATTGGCTACTGATAAGGTTAAGGAAGTTAAAGGAAAAGAAGTGTTCACTGGAAAATGTGAAAAGAAAAAGAGACTTCAGAATGGTGGAGAGTTGGATCTCGTGTTGATTACAAATGCTGATATTGTGATGGATCACGAAGCTTCGCCCTCGTCAATGAGAAAATCTAGAAGTCAAGATCAGTTAGGATCGGCGATGAAAAACATCGATGTTGCTTCGAATGAGATAGTCCTAAGTAAGAATGAGGATGTTAATGTTGATAATGTTGAGGATTCATTGACAAAAGCAAGAGTTTGTATTAGAGCTAGATCAGAAGAAACCATGATCACTGATGGATGTCAATGGAGAAAGTATGGGCAAAAACTATCGAAAGGAAACCCGTGTCCTAAAGCTTATTATCGCTGCAGCACGACCCATGGTTGCCCAGTCCGAAAGCATGTACAAAGGTGTGCTTTTGACAAAATAGTTGTAATCACAACTTATGAAGGAAATCACAACCACCCTTTACCTGCAGCAGCTAAAGAAATGGCAAAAACAACTTCAGCAGTTGCAAAGATACTTCTTTCAGCATCAACATCAAGCAATGATGGACAATTAAATGCAAATTTACTCACAAGAACACTTCTTCCTTGTTCTTCAAGTATTGCAACTATATCAGCTTCTGCTCCATATCCAACTATTACAATTGATTACACTCAATCTCCAAATACTCCACAAAGGAACGCAAATCAGTTTCAAACTCCTTTAATCCCTCAGAGTTTTGGAAATTCCTCAGCTTCTCTGATCCCTCAAATACCTAATCAAAACCAATCAAAATTTTCTGGACTACATATGTCGAAAGATGCAGCTGACCCTTCACAAATATTGGCAATACCAAATATTACTGCTCAAACAATTAATGCTGCCATTGCTGCTAGTCCAAATATTCCTGCAGCTTTGTCAGCTGCTATTACATCCATTATTGGTGATACTCAGCCAAACAACAACACTGCTGCTGCTGATAATAATAATAATGGCAACAATGTCACCGAAGGAAATAGCAATGGTAGCAACAATAATGTCACAGAAGCCAATAGCAACAAAATTATCACATGTGGCATCAACAATGATGGGAAGGAACGAAATCAGGAATACCAATTACAAGACCTAAACTTTAATTTTTTTTGCTCAAAGATTTAG
Protein sequence

>Msa1414150

MASVPVNNNSFPDDTNNLELKLSPNKNMDATHKLDFFDDNNNDHHEVVSVPVPDNDHIHTVTPSLLELKLSLGPIPITINTSSDQSMMDDGMSPNSEEKRTKSMERFERVMQDRKGKKVKGKKVFDGKFKEKKRTENGGVKEVKGQKVSDQKFVEKMRIKNDGELMKRKFDDAGLATDKVKEVKGKEVFTGKCEKKKRLQNGGELDLVLITNADIVMDHEASPSSMRKSRSQDQLGSAMKNIDVASNEIVLSKNEDVNVDNVEDSLTKARVCIRARSEETMITDGCQWRKYGQKLSKGNPCPKAYYRCSTTHGCPVRKHVQRCAFDKIVVITTYEGNHNHPLPAAAKEMAKTTSAVAKILLSASTSSNDGQLNANLLTRTLLPCSSSIATISASAPYPTITIDYTQSPNTPQRNANQFQTPLIPQSFGNSSASLIPQIPNQNQSKFSGLHMSKDAADPSQILAIPNITAQTINAAIAASPNIPAALSAAITSIIGDTQPNNNTAAADNNNNGNNVTEGNSNGSNNNVTEANSNKIITCGINNDGKERNQEYQLQDLNFNFFCSKI*