Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414760 | sp|Q9SQL0|JA2_SOLLC | 34.161 | 161 | 88 | 7 | 11 | 164 | 20 | 169 | 2.49e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414760 | G7I4G0 | 80.687 | 233 | 25 | 4 | 98 | 330 | 5 | 217 | 3.13e-120 | 354 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1414760 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414760 | MtrunA17_Chr1g0168571 | 53.372 | 341 | 111 | 10 | 1 | 323 | 1 | 311 | 1.79e-104 | 309 |
| Msa1414760 | MtrunA17_Chr7g0274971 | 70.192 | 208 | 47 | 2 | 1 | 201 | 1 | 200 | 1.57e-96 | 285 |
| Msa1414760 | MtrunA17_Chr1g0174911 | 45.634 | 355 | 115 | 9 | 1 | 323 | 1 | 309 | 5.25e-90 | 272 |
| Msa1414760 | MtrunA17_Chr7g0263931 | 33.758 | 157 | 89 | 5 | 11 | 159 | 17 | 166 | 2.73e-17 | 81.3 |
| Msa1414760 | MtrunA17_Chr7g0214071 | 31.481 | 162 | 99 | 4 | 11 | 170 | 21 | 172 | 2.52e-15 | 74.7 |
| Msa1414760 | MtrunA17_Chr8g0385991 | 32.278 | 158 | 81 | 5 | 11 | 155 | 20 | 164 | 6.59e-13 | 67.4 |
| Msa1414760 | MtrunA17_Chr2g0326361 | 28.326 | 233 | 125 | 9 | 11 | 209 | 20 | 244 | 8.09e-12 | 65.1 |
| Msa1414760 | MtrunA17_Chr3g0139331 | 26.562 | 192 | 127 | 6 | 11 | 195 | 17 | 201 | 1.78e-11 | 64.3 |
| Msa1414760 | MtrunA17_Chr7g0252971 | 30.233 | 172 | 98 | 7 | 11 | 167 | 14 | 178 | 2.24e-11 | 63.9 |
| Msa1414760 | MtrunA17_Chr4g0047841 | 33.333 | 129 | 77 | 4 | 11 | 137 | 21 | 142 | 2.24e-11 | 63.9 |
| Msa1414760 | MtrunA17_Chr3g0130101 | 31.875 | 160 | 96 | 8 | 11 | 165 | 13 | 164 | 7.12e-11 | 62.8 |
| Msa1414760 | MtrunA17_Chr5g0417001 | 31.973 | 147 | 82 | 6 | 11 | 151 | 20 | 154 | 7.35e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414760 | AT5G13180.1 | 33.333 | 147 | 85 | 5 | 11 | 154 | 20 | 156 | 1.15e-12 | 67.4 |
| Msa1414760 | AT5G62380.2 | 32.237 | 152 | 94 | 6 | 11 | 159 | 13 | 158 | 3.23e-12 | 67.0 |
| Msa1414760 | AT5G62380.1 | 32.237 | 152 | 94 | 6 | 11 | 159 | 13 | 158 | 3.23e-12 | 67.0 |
| Msa1414760 | AT2G24430.2 | 30.000 | 150 | 95 | 4 | 11 | 157 | 22 | 164 | 5.03e-12 | 66.2 |
| Msa1414760 | AT2G24430.1 | 30.000 | 150 | 95 | 4 | 11 | 157 | 22 | 164 | 5.03e-12 | 66.2 |
| Msa1414760 | AT3G10480.2 | 34.416 | 154 | 87 | 8 | 11 | 158 | 33 | 178 | 5.30e-12 | 67.0 |
| Msa1414760 | AT3G15510.1 | 27.660 | 188 | 107 | 7 | 11 | 182 | 23 | 197 | 1.79e-11 | 65.1 |
| Msa1414760 | AT2G46770.1 | 31.429 | 175 | 81 | 9 | 11 | 159 | 22 | 183 | 9.76e-11 | 62.8 |
Find 61 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTTGATTTCTTGAATT+TGG | 0.087662 | tig0024141:-60255 | None:intergenic |
| CCACCATTTGATTGACATTT+TGG | 0.106202 | tig0024141:-59718 | None:intergenic |
| AGTGGCAGATTTCTTCTTTA+AGG | 0.196237 | tig0024141:-57218 | None:intergenic |
| TAAAGAATCCTTGGGAGATT+TGG | 0.224375 | tig0024141:+57140 | Msa1414760:CDS |
| AATCTCCCAAGGATTCTTTA+TGG | 0.228130 | tig0024141:-57137 | None:intergenic |
| CCAGAAAAGACCGTGGTTCT+TGG | 0.260366 | tig0024141:+59772 | Msa1414760:CDS |
| TAGCAATGTTTGCCAGGATT+TGG | 0.273310 | tig0024141:-60468 | None:intergenic |
| AAACGTTTGATTCGTACTAT+TGG | 0.295360 | tig0024141:+57244 | Msa1414760:CDS |
| AAAGAATCCTTGGGAGATTT+GGG | 0.315347 | tig0024141:+57141 | Msa1414760:CDS |
| TGGAAATATCAAGATTGATT+TGG | 0.320688 | tig0024141:+60281 | Msa1414760:CDS |
| TTGATTCGTACTATTGGAAT+TGG | 0.345874 | tig0024141:+57250 | Msa1414760:CDS |
| TTCAAGAACATTGATATAGT+TGG | 0.354618 | tig0024141:-57098 | None:intergenic |
| TCATCAAGTGAGAATTTGAT+TGG | 0.398760 | tig0024141:-57759 | None:intergenic |
| TTGATACCATAAAGAATCCT+TGG | 0.401306 | tig0024141:+57131 | Msa1414760:CDS |
| ATCTTTGATTAACAATGCTT+CGG | 0.415664 | tig0024141:+57417 | Msa1414760:CDS |
| TCAAGAACATTGATATAGTT+GGG | 0.434618 | tig0024141:-57097 | None:intergenic |
| AGTATGGTAACTTACAGATA+TGG | 0.443956 | tig0024141:-57839 | None:intergenic |
| GAACCAAAATGTCAATCAAA+TGG | 0.458333 | tig0024141:+59715 | Msa1414760:CDS |
| TCAAGAAATCAACTTGATAG+TGG | 0.460070 | tig0024141:+60261 | Msa1414760:CDS |
| GCAAGTTCTCACTCATATCA+TGG | 0.460346 | tig0024141:+57172 | Msa1414760:CDS |
| TAAACATAGCAATGTTTGCC+AGG | 0.462499 | tig0024141:-60474 | None:intergenic |
| CAAGGAAAGACAGTTGTTCC+CGG | 0.469375 | tig0024141:+57802 | Msa1414760:CDS |
| ACAAATAATACTTACAATGT+TGG | 0.484031 | tig0024141:-59809 | None:intergenic |
| TCTGCATAGAACATAATTGC+TGG | 0.484592 | tig0024141:-57683 | None:intergenic |
| ATTGAAATGATTCCAAATCC+TGG | 0.485538 | tig0024141:+60456 | Msa1414760:CDS |
| ATGAAGATGGTGATATCTCT+TGG | 0.494027 | tig0024141:+60370 | Msa1414760:CDS |
| GGAGAAAGGTGGGAAATACT+TGG | 0.497376 | tig0024141:+59749 | Msa1414760:CDS |
| AATCAAATGGTGGACACAAA+AGG | 0.500915 | tig0024141:+59728 | Msa1414760:CDS |
| TGATACCATAAAGAATCCTT+GGG | 0.502233 | tig0024141:+57132 | Msa1414760:CDS |
| ATTATAAACAAAGATGAAGA+TGG | 0.538976 | tig0024141:+60357 | Msa1414760:CDS |
| TCTCACTTGATGAATAGCAT+TGG | 0.540753 | tig0024141:+57769 | Msa1414760:CDS |
| AGGAAGGTTAATCGAAGAGG+AGG | 0.555973 | tig0024141:+60431 | Msa1414760:CDS |
| AAAGAGACCGGCCAAACCCT+AGG | 0.557513 | tig0024141:+57313 | Msa1414760:CDS |
| TATCGTGAACTTTATTGTAG+AGG | 0.559597 | tig0024141:-57066 | None:intergenic |
| CGAAGAAGTTCACCATCTGT+AGG | 0.564532 | tig0024141:-57037 | None:intergenic |
| ACACTTCTCAAGATGGTGGA+TGG | 0.567014 | tig0024141:+57368 | Msa1414760:CDS |
| AGTATAGTTGACAAAGAGAC+CGG | 0.568733 | tig0024141:+57301 | Msa1414760:CDS |
| AAGAGTTACACTTCTCAAGA+TGG | 0.569646 | tig0024141:+57361 | Msa1414760:CDS |
| GAACTCATAGAGGCGAATGA+AGG | 0.573007 | tig0024141:+60411 | Msa1414760:CDS |
| TTTAGGACATCATTGTTTCG+AGG | 0.573378 | tig0024141:+59677 | Msa1414760:intron |
| AACTCTTCCCAAATCTCCCA+AGG | 0.573940 | tig0024141:-57148 | None:intergenic |
| TTCTCACTCATATCATGGAA+AGG | 0.587566 | tig0024141:+57177 | Msa1414760:CDS |
| ACATTGATATAGTTGGGCAC+TGG | 0.596165 | tig0024141:-57091 | None:intergenic |
| TGGTGGACACAAAAGGAGAA+AGG | 0.597243 | tig0024141:+59735 | Msa1414760:CDS |
| GACAGTTGTTCCCGGACCTG+CGG | 0.611545 | tig0024141:+57810 | Msa1414760:CDS |
| TGTTAATCAAAGATATGTGA+AGG | 0.617441 | tig0024141:-57408 | None:intergenic |
| CCAAAATGTCAATCAAATGG+TGG | 0.617859 | tig0024141:+59718 | Msa1414760:CDS |
| TCATAGAGGCGAATGAAGGA+AGG | 0.619859 | tig0024141:+60415 | Msa1414760:CDS |
| GGACACAAAAGGAGAAAGGT+GGG | 0.621854 | tig0024141:+59739 | Msa1414760:CDS |
| GTACTATTGGAATTGGTACG+TGG | 0.623666 | tig0024141:+57257 | Msa1414760:CDS |
| AGTTACACTTCTCAAGATGG+TGG | 0.626247 | tig0024141:+57364 | Msa1414760:CDS |
| AGCATTGGACAAGATAAGCA+AGG | 0.636949 | tig0024141:+57784 | Msa1414760:CDS |
| TGGACACAAAAGGAGAAAGG+TGG | 0.644978 | tig0024141:+59738 | Msa1414760:CDS |
| AAGTGTAACTCTTCTCAAAG+CGG | 0.648652 | tig0024141:-57351 | None:intergenic |
| TACTATTGGAATTGGTACGT+GGG | 0.648722 | tig0024141:+57258 | Msa1414760:CDS |
| TGAAGGAAGGTTAATCGAAG+AGG | 0.648808 | tig0024141:+60428 | Msa1414760:CDS |
| ACGAATCAAACGTTTACTAG+TGG | 0.651740 | tig0024141:-57236 | None:intergenic |
| ACGTGGGAAGCTGAAGACAC+CGG | 0.664319 | tig0024141:+57274 | Msa1414760:CDS |
| AGCTTTAAGTCCAAGAACCA+CGG | 0.675233 | tig0024141:-59782 | None:intergenic |
| TAAAAGTGCCAATACGACAG+AGG | 0.688062 | tig0024141:+60305 | Msa1414760:CDS |
| TACTTGGCCAGAAAAGACCG+TGG | 0.736153 | tig0024141:+59765 | Msa1414760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATATTTTTTATGAAAT+TGG | + | tig0024141:58065-58084 | Msa1414760:intron | 10.0% |
| !!! | ATATTTTTTTGTTATATTGT+TGG | - | tig0024141:58456-58475 | None:intergenic | 10.0% |
| !!! | AAATTGTTTAAAAGTATAAT+TGG | + | tig0024141:58530-58549 | Msa1414760:intron | 10.0% |
| !!! | AATTGTTTAAAAGTATAATT+GGG | + | tig0024141:58531-58550 | Msa1414760:intron | 10.0% |
| !!! | AAAAAAAATAGAAATTTGTT+CGG | - | tig0024141:58946-58965 | None:intergenic | 10.0% |
| !! | ACTAATTAATACTATTAATT+TGG | - | tig0024141:59113-59132 | None:intergenic | 10.0% |
| !! | ATACTAAGTTTATACTAATT+AGG | + | tig0024141:57564-57583 | Msa1414760:intron | 15.0% |
| !! | TACTAAGTTTATACTAATTA+GGG | + | tig0024141:57565-57584 | Msa1414760:intron | 15.0% |
| !!! | ATTCTTTTTTCTGTATTTTT+TGG | - | tig0024141:57733-57752 | None:intergenic | 15.0% |
| !!! | TAGATATAGATATAGATTTT+TGG | + | tig0024141:58807-58826 | Msa1414760:intron | 15.0% |
| !!! | ATTATTATTATTGTTGTTGT+TGG | + | tig0024141:58866-58885 | Msa1414760:intron | 15.0% |
| !!! | TAACAAAAAACAAATTTTGT+TGG | + | tig0024141:59070-59089 | Msa1414760:intron | 15.0% |
| !! | TGGGTAAAAAAATTAAAATT+CGG | - | tig0024141:59318-59337 | None:intergenic | 15.0% |
| !! | ATATAATCAAATTCAAATCT+GGG | - | tig0024141:59337-59356 | None:intergenic | 15.0% |
| !! | AATTATCATTACATATAGAA+AGG | - | tig0024141:59619-59638 | None:intergenic | 15.0% |
| !! | GTTAAAATAGATCAAATAAA+TGG | - | tig0024141:60057-60076 | None:intergenic | 15.0% |
| !! | AAAAATAATTCATGAGGTAA+GGG | - | tig0024141:57518-57537 | None:intergenic | 20.0% |
| !! | AAAAAATAATTCATGAGGTA+AGG | - | tig0024141:57519-57538 | None:intergenic | 20.0% |
| !!! | TACCTCATGAATTATTTTTT+TGG | + | tig0024141:57519-57538 | Msa1414760:intron | 20.0% |
| !! | AACCAAAAAAATAATTCATG+AGG | - | tig0024141:57524-57543 | None:intergenic | 20.0% |
| !! | TAAACTTAGTATTTAAACGT+TGG | - | tig0024141:57556-57575 | None:intergenic | 20.0% |
| !!! | TTTTCTGTATTTTTTGGATT+GGG | - | tig0024141:57727-57746 | None:intergenic | 20.0% |
| !!! | TTTTTCTGTATTTTTTGGAT+TGG | - | tig0024141:57728-57747 | None:intergenic | 20.0% |
| !! | TTACCATACTATAATTTGAT+TGG | + | tig0024141:57852-57871 | Msa1414760:intron | 20.0% |
| !! | ATCAAGCTAACATAAAAAAA+GGG | - | tig0024141:58016-58035 | None:intergenic | 20.0% |
| !! | AATCAAGCTAACATAAAAAA+AGG | - | tig0024141:58017-58036 | None:intergenic | 20.0% |
| !!! | GAAATTGGTTTTGATTAAAA+AGG | + | tig0024141:58080-58099 | Msa1414760:intron | 20.0% |
| !!! | GAAAGAAAAAAAAGATTTTG+AGG | - | tig0024141:58226-58245 | None:intergenic | 20.0% |
| !! | TATATATATTAGCGAAAAGT+CGG | + | tig0024141:58267-58286 | Msa1414760:intron | 20.0% |
| !! | AAAATTGCTAGCAATAATAA+TGG | - | tig0024141:59033-59052 | None:intergenic | 20.0% |
| !! | CTAAATCTATATACTTGAAA+AGG | + | tig0024141:59258-59277 | Msa1414760:intron | 20.0% |
| !! | GATATAATCAAATTCAAATC+TGG | - | tig0024141:59338-59357 | None:intergenic | 20.0% |
| !! | TCAACTAAAAAGAGAAAATT+TGG | + | tig0024141:59432-59451 | Msa1414760:intron | 20.0% |
| !! | ACAAATAATACTTACAATGT+TGG | - | tig0024141:59812-59831 | None:intergenic | 20.0% |
| !!! | ATGTGTTATTTATTTGTTGA+AGG | + | tig0024141:59846-59865 | Msa1414760:intron | 20.0% |
| !! | AATATATCAACAAAATCCAT+GGG | - | tig0024141:59874-59893 | None:intergenic | 20.0% |
| !! | TAATATATCAACAAAATCCA+TGG | - | tig0024141:59875-59894 | None:intergenic | 20.0% |
| !! | ATTGTTTGAATAATGTGTTT+GGG | - | tig0024141:60132-60151 | None:intergenic | 20.0% |
| !! | ATTATAAACAAAGATGAAGA+TGG | + | tig0024141:60357-60376 | Msa1414760:CDS | 20.0% |
| ! | AAAAATTTCAAACCTACAGA+TGG | + | tig0024141:57025-57044 | Msa1414760:CDS | 25.0% |
| ! | TCAAGAACATTGATATAGTT+GGG | - | tig0024141:57100-57119 | None:intergenic | 25.0% |
| ! | TTCAAGAACATTGATATAGT+TGG | - | tig0024141:57101-57120 | None:intergenic | 25.0% |
| !!! | TTTGTCAACTATACTTTTTC+CGG | - | tig0024141:57296-57315 | None:intergenic | 25.0% |
| ! | TGTTAATCAAAGATATGTGA+AGG | - | tig0024141:57411-57430 | None:intergenic | 25.0% |
| ! | ATCTTTGATTAACAATGCTT+CGG | + | tig0024141:57417-57436 | Msa1414760:CDS | 25.0% |
| !!! | ACTAATTAGGGTTTATTTTC+TGG | + | tig0024141:57577-57596 | Msa1414760:intron | 25.0% |
| !! | TAAAAGTGACAATTTTTCCT+TGG | + | tig0024141:57616-57635 | Msa1414760:intron | 25.0% |
| ! | TAGCCAATCAAATTATAGTA+TGG | - | tig0024141:57858-57877 | None:intergenic | 25.0% |
| !!! | TAAAGTGATTTTTTTGTGTG+TGG | + | tig0024141:57912-57931 | Msa1414760:intron | 25.0% |
| !!! | AAAGTGATTTTTTTGTGTGT+GGG | + | tig0024141:57913-57932 | Msa1414760:intron | 25.0% |
| ! | AAGAGAAAAAACAAATACGA+CGG | - | tig0024141:57993-58012 | None:intergenic | 25.0% |
| !!! | TTGGTTTTGATTAAAAAGGA+TGG | + | tig0024141:58084-58103 | Msa1414760:intron | 25.0% |
| !! | CTTAAACAAGCTTGTTTAAA+AGG | - | tig0024141:58179-58198 | None:intergenic | 25.0% |
| !!! | AGAAAAAAAAGATTTTGAGG+TGG | - | tig0024141:58223-58242 | None:intergenic | 25.0% |
| ! | CAATAAAAAGAGTGGAAAAA+TGG | - | tig0024141:58305-58324 | None:intergenic | 25.0% |
| !! | TTTTTCCACTCTTTTTATTG+CGG | + | tig0024141:58305-58324 | Msa1414760:intron | 25.0% |
| ! | GTCATTGAAATAGATAATCA+TGG | - | tig0024141:58432-58451 | None:intergenic | 25.0% |
| !!! | TAGTTTGTTACCCTTTTTAA+GGG | + | tig0024141:58586-58605 | Msa1414760:intron | 25.0% |
| ! | TTTCCTTTATCCCTTAAAAA+GGG | - | tig0024141:58599-58618 | None:intergenic | 25.0% |
| !! | TTTTCCTTTATCCCTTAAAA+AGG | - | tig0024141:58600-58619 | None:intergenic | 25.0% |
| ! | ACTATTTGTATTGAAAGTTG+AGG | + | tig0024141:58703-58722 | Msa1414760:intron | 25.0% |
| !! | ATTATTATTGTTGTTGTTGG+TGG | + | tig0024141:58869-58888 | Msa1414760:intron | 25.0% |
| !!! | GTTTCTTTGTGATTTTTTTG+TGG | + | tig0024141:58906-58925 | Msa1414760:intron | 25.0% |
| ! | ATGAAAACGATTAAATCTGA+TGG | + | tig0024141:59235-59254 | Msa1414760:intron | 25.0% |
| ! | TAACATTTGAACAAGATTAC+TGG | - | tig0024141:59360-59379 | None:intergenic | 25.0% |
| !! | TTTGGAACAAGAATGAAATT+TGG | + | tig0024141:59450-59469 | Msa1414760:intron | 25.0% |
| !! | CTTTTGCATTCTTGATTTTT+AGG | + | tig0024141:59660-59679 | Msa1414760:intron | 25.0% |
| ! | ATTCACAAATGATCATATGT+AGG | + | tig0024141:59904-59923 | Msa1414760:intron | 25.0% |
| !!! | TACTTTTTAAGGTGAATAAG+TGG | - | tig0024141:60025-60044 | None:intergenic | 25.0% |
| !!! | GGACTATGATTTACTTTTTA+AGG | - | tig0024141:60036-60055 | None:intergenic | 25.0% |
| ! | CATTGTTTGAATAATGTGTT+TGG | - | tig0024141:60133-60152 | None:intergenic | 25.0% |
| !! | AATTTGGATCAATATTTTCC+TGG | - | tig0024141:60242-60261 | None:intergenic | 25.0% |
| !!! | TCAAGTTGATTTCTTGAATT+TGG | - | tig0024141:60258-60277 | None:intergenic | 25.0% |
| ! | TGGAAATATCAAGATTGATT+TGG | + | tig0024141:60281-60300 | Msa1414760:CDS | 25.0% |
| ! | GAAAAATCTAACAAAGAAGA+TGG | + | tig0024141:60327-60346 | Msa1414760:CDS | 25.0% |
| TATCGTGAACTTTATTGTAG+AGG | - | tig0024141:57069-57088 | None:intergenic | 30.0% | |
| TTGATACCATAAAGAATCCT+TGG | + | tig0024141:57131-57150 | Msa1414760:CDS | 30.0% | |
| TGATACCATAAAGAATCCTT+GGG | + | tig0024141:57132-57151 | Msa1414760:CDS | 30.0% | |
| ! | AAACGTTTGATTCGTACTAT+TGG | + | tig0024141:57244-57263 | Msa1414760:CDS | 30.0% |
| ! | TTGATTCGTACTATTGGAAT+TGG | + | tig0024141:57250-57269 | Msa1414760:CDS | 30.0% |
| !!! | GAAACGTTTTTTTAGACCTA+GGG | - | tig0024141:57332-57351 | None:intergenic | 30.0% |
| TCATCAAGTGAGAATTTGAT+TGG | - | tig0024141:57762-57781 | None:intergenic | 30.0% | |
| AGTATGGTAACTTACAGATA+TGG | - | tig0024141:57842-57861 | None:intergenic | 30.0% | |
| AGAGAAAAAACAAATACGAC+GGG | - | tig0024141:57992-58011 | None:intergenic | 30.0% | |
| !!! | CTAGTTTGTTACCCTTTTTA+AGG | + | tig0024141:58585-58604 | Msa1414760:intron | 30.0% |
| !! | TTACCCTTTTTAAGGGATAA+AGG | + | tig0024141:58593-58612 | Msa1414760:intron | 30.0% |
| ! | TAACATGTTTTGCCTCTTTT+GGG | - | tig0024141:58755-58774 | None:intergenic | 30.0% |
| ! | ATAACATGTTTTGCCTCTTT+TGG | - | tig0024141:58756-58775 | None:intergenic | 30.0% |
| TTTATCATGTTCAACTTTGC+TGG | - | tig0024141:59505-59524 | None:intergenic | 30.0% | |
| GAACCAAAATGTCAATCAAA+TGG | + | tig0024141:59715-59734 | Msa1414760:CDS | 30.0% | |
| GCATTGTTATATGAAGATGT+CGG | + | tig0024141:59981-60000 | Msa1414760:intron | 30.0% | |
| TCAAGAAATCAACTTGATAG+TGG | + | tig0024141:60261-60280 | Msa1414760:CDS | 30.0% | |
| ATTGAAATGATTCCAAATCC+TGG | + | tig0024141:60456-60475 | Msa1414760:CDS | 30.0% | |
| AATCTCCCAAGGATTCTTTA+TGG | - | tig0024141:57140-57159 | None:intergenic | 35.0% | |
| TAAAGAATCCTTGGGAGATT+TGG | + | tig0024141:57140-57159 | Msa1414760:CDS | 35.0% | |
| AAAGAATCCTTGGGAGATTT+GGG | + | tig0024141:57141-57160 | Msa1414760:CDS | 35.0% | |
| TTCTCACTCATATCATGGAA+AGG | + | tig0024141:57177-57196 | Msa1414760:CDS | 35.0% | |
| AGTGGCAGATTTCTTCTTTA+AGG | - | tig0024141:57221-57240 | None:intergenic | 35.0% | |
| ACGAATCAAACGTTTACTAG+TGG | - | tig0024141:57239-57258 | None:intergenic | 35.0% | |
| TACTATTGGAATTGGTACGT+GGG | + | tig0024141:57258-57277 | Msa1414760:CDS | 35.0% | |
| AGTATAGTTGACAAAGAGAC+CGG | + | tig0024141:57301-57320 | Msa1414760:CDS | 35.0% | |
| !!! | GTTTTTTTAGACCTAGGGTT+TGG | - | tig0024141:57327-57346 | None:intergenic | 35.0% |
| !!! | GGAAACGTTTTTTTAGACCT+AGG | - | tig0024141:57333-57352 | None:intergenic | 35.0% |
| AAGTGTAACTCTTCTCAAAG+CGG | - | tig0024141:57354-57373 | None:intergenic | 35.0% | |
| AAGAGTTACACTTCTCAAGA+TGG | + | tig0024141:57361-57380 | Msa1414760:CDS | 35.0% | |
| AAGGGTGGTCACTATTTAAT+AGG | - | tig0024141:57500-57519 | None:intergenic | 35.0% | |
| AATAATTCATGAGGTAAGGG+TGG | - | tig0024141:57515-57534 | None:intergenic | 35.0% | |
| TAAATGTGTGCACAATACCA+AGG | - | tig0024141:57636-57655 | None:intergenic | 35.0% | |
| TCTGCATAGAACATAATTGC+TGG | - | tig0024141:57686-57705 | None:intergenic | 35.0% | |
| TCTCACTTGATGAATAGCAT+TGG | + | tig0024141:57769-57788 | Msa1414760:CDS | 35.0% | |
| GAGAAAAAACAAATACGACG+GGG | - | tig0024141:57991-58010 | None:intergenic | 35.0% | |
| ! | ATTATTGTTGTTGTTGGTGG+TGG | + | tig0024141:58872-58891 | Msa1414760:intron | 35.0% |
| ! | TGCTGGTCAGCTAAAAATTT+TGG | - | tig0024141:59488-59507 | None:intergenic | 35.0% |
| ! | TTTAGGACATCATTGTTTCG+AGG | + | tig0024141:59677-59696 | Msa1414760:intron | 35.0% |
| ! | CCACCATTTGATTGACATTT+TGG | - | tig0024141:59721-59740 | None:intergenic | 35.0% |
| CCAAAATGTCAATCAAATGG+TGG | + | tig0024141:59718-59737 | Msa1414760:CDS | 35.0% | |
| !! | AATCAAATGGTGGACACAAA+AGG | + | tig0024141:59728-59747 | Msa1414760:CDS | 35.0% |
| ! | TTATTTGTTGAAGGAACCCA+TGG | + | tig0024141:59855-59874 | Msa1414760:intron | 35.0% |
| TACCAAGTGATATATGCACA+CGG | - | tig0024141:59953-59972 | None:intergenic | 35.0% | |
| ! | AATGCAGGAGCACAATAATA+AGG | - | tig0024141:60211-60230 | None:intergenic | 35.0% |
| ! | AGATTTTTCCTCTGTCGTAT+TGG | - | tig0024141:60316-60335 | None:intergenic | 35.0% |
| ATGAAGATGGTGATATCTCT+TGG | + | tig0024141:60370-60389 | Msa1414760:CDS | 35.0% | |
| TAAACATAGCAATGTTTGCC+AGG | - | tig0024141:60477-60496 | None:intergenic | 35.0% | |
| ACATTGATATAGTTGGGCAC+TGG | - | tig0024141:57094-57113 | None:intergenic | 40.0% | |
| GCAAGTTCTCACTCATATCA+TGG | + | tig0024141:57172-57191 | Msa1414760:CDS | 40.0% | |
| GTACTATTGGAATTGGTACG+TGG | + | tig0024141:57257-57276 | Msa1414760:CDS | 40.0% | |
| AGTTACACTTCTCAAGATGG+TGG | + | tig0024141:57364-57383 | Msa1414760:CDS | 40.0% | |
| !!! | CTGCTTTTGCGTTTTTTTGC+AGG | + | tig0024141:57660-57679 | Msa1414760:intron | 40.0% |
| ! | AGCATTGGACAAGATAAGCA+AGG | + | tig0024141:57784-57803 | Msa1414760:CDS | 40.0% |
| CATCACCGCAATAAAAAGAG+TGG | - | tig0024141:58313-58332 | None:intergenic | 40.0% | |
| AGAAAATGTCAGCCCAAAAG+AGG | + | tig0024141:58740-58759 | Msa1414760:intron | 40.0% | |
| !! | AGCTTTAAGTCCAAGAACCA+CGG | - | tig0024141:59785-59804 | None:intergenic | 40.0% |
| ACCAAGTGATATATGCACAC+GGG | - | tig0024141:59952-59971 | None:intergenic | 40.0% | |
| TTCCTGGAAAATGAGAATGC+AGG | - | tig0024141:60226-60245 | None:intergenic | 40.0% | |
| !! | TAAAAGTGCCAATACGACAG+AGG | + | tig0024141:60305-60324 | Msa1414760:CDS | 40.0% |
| ! | TTTTGCAAGGGAACTCATAG+AGG | + | tig0024141:60401-60420 | Msa1414760:CDS | 40.0% |
| TGAAGGAAGGTTAATCGAAG+AGG | + | tig0024141:60428-60447 | Msa1414760:CDS | 40.0% | |
| TAGCAATGTTTGCCAGGATT+TGG | - | tig0024141:60471-60490 | None:intergenic | 40.0% | |
| CGAAGAAGTTCACCATCTGT+AGG | - | tig0024141:57040-57059 | None:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+AGG | - | tig0024141:57151-57170 | None:intergenic | 45.0% | |
| ! | TTTTAGACCTAGGGTTTGGC+CGG | - | tig0024141:57323-57342 | None:intergenic | 45.0% |
| !! | ACACTTCTCAAGATGGTGGA+TGG | + | tig0024141:57368-57387 | Msa1414760:CDS | 45.0% |
| CAAGGAAAGACAGTTGTTCC+CGG | + | tig0024141:57802-57821 | Msa1414760:CDS | 45.0% | |
| !! | ATTGTTGTTGTTGGTGGTGG+TGG | + | tig0024141:58875-58894 | Msa1414760:intron | 45.0% |
| ! | TGGTGGACACAAAAGGAGAA+AGG | + | tig0024141:59735-59754 | Msa1414760:CDS | 45.0% |
| TGGACACAAAAGGAGAAAGG+TGG | + | tig0024141:59738-59757 | Msa1414760:CDS | 45.0% | |
| GGACACAAAAGGAGAAAGGT+GGG | + | tig0024141:59739-59758 | Msa1414760:CDS | 45.0% | |
| GGAGAAAGGTGGGAAATACT+TGG | + | tig0024141:59749-59768 | Msa1414760:CDS | 45.0% | |
| CCAAGTGATATATGCACACG+GGG | - | tig0024141:59951-59970 | None:intergenic | 45.0% | |
| ! | CTCCTGCATTCTCATTTTCC+AGG | + | tig0024141:60221-60240 | Msa1414760:intron | 45.0% |
| ! | TTGGCCTGAGCTTTTTGCAA+GGG | + | tig0024141:60389-60408 | Msa1414760:CDS | 45.0% |
| AGTTCCCTTGCAAAAAGCTC+AGG | - | tig0024141:60396-60415 | None:intergenic | 45.0% | |
| GAACTCATAGAGGCGAATGA+AGG | + | tig0024141:60411-60430 | Msa1414760:CDS | 45.0% | |
| TCATAGAGGCGAATGAAGGA+AGG | + | tig0024141:60415-60434 | Msa1414760:CDS | 45.0% | |
| AGGAAGGTTAATCGAAGAGG+AGG | + | tig0024141:60431-60450 | Msa1414760:CDS | 45.0% | |
| !!! | GTTTTATTTATTTATTTTTT+TGG | + | tig0024141:59131-59150 | Msa1414760:intron | 5.0% |
| !!! | TTTTGTATTTAAATAAAATT+TGG | - | tig0024141:59399-59418 | None:intergenic | 5.0% |
| !!! | TTTTATTTAAATACAAAATT+TGG | + | tig0024141:59401-59420 | Msa1414760:intron | 5.0% |
| !! | AAAAAAAAAAAAAAAAGATT+TGG | - | tig0024141:59534-59553 | None:intergenic | 5.0% |
| ! | ACAGATATGGCGTTTTCCGC+AGG | - | tig0024141:57829-57848 | None:intergenic | 50.0% |
| TACTTGGCCAGAAAAGACCG+TGG | + | tig0024141:59765-59784 | Msa1414760:CDS | 50.0% | |
| ! | CCAAGAACCACGGTCTTTTC+TGG | - | tig0024141:59775-59794 | None:intergenic | 50.0% |
| CCAGAAAAGACCGTGGTTCT+TGG | + | tig0024141:59772-59791 | Msa1414760:CDS | 50.0% | |
| CCCCGTGTGCATATATCACT+TGG | + | tig0024141:59948-59967 | Msa1414760:intron | 50.0% | |
| ! | CTTGGCCTGAGCTTTTTGCA+AGG | + | tig0024141:60388-60407 | Msa1414760:CDS | 50.0% |
| ACGTGGGAAGCTGAAGACAC+CGG | + | tig0024141:57274-57293 | Msa1414760:CDS | 55.0% | |
| AAAGAGACCGGCCAAACCCT+AGG | + | tig0024141:57313-57332 | Msa1414760:CDS | 55.0% | |
| ! | TATGGCGTTTTCCGCAGGTC+CGG | - | tig0024141:57824-57843 | None:intergenic | 55.0% |
| GACAGTTGTTCCCGGACCTG+CGG | + | tig0024141:57810-57829 | Msa1414760:CDS | 60.0% | |
| ! | ATGGCGTTTTCCGCAGGTCC+GGG | - | tig0024141:57823-57842 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024141 | gene | 57001 | 60497 | 57001 | ID=Msa1414760;Name=Msa1414760 |
| tig0024141 | mRNA | 57001 | 60497 | 57001 | ID=Msa1414760-mRNA-1;Parent=Msa1414760;Name=Msa1414760-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|4|0|330 |
| tig0024141 | exon | 57001 | 57438 | 57001 | ID=Msa1414760-mRNA-1:exon:21938;Parent=Msa1414760-mRNA-1 |
| tig0024141 | exon | 57682 | 57846 | 57682 | ID=Msa1414760-mRNA-1:exon:21939;Parent=Msa1414760-mRNA-1 |
| tig0024141 | exon | 59682 | 59816 | 59682 | ID=Msa1414760-mRNA-1:exon:21940;Parent=Msa1414760-mRNA-1 |
| tig0024141 | exon | 60243 | 60497 | 60243 | ID=Msa1414760-mRNA-1:exon:21941;Parent=Msa1414760-mRNA-1 |
| tig0024141 | CDS | 57001 | 57438 | 57001 | ID=Msa1414760-mRNA-1:cds;Parent=Msa1414760-mRNA-1 |
| tig0024141 | CDS | 57682 | 57846 | 57682 | ID=Msa1414760-mRNA-1:cds;Parent=Msa1414760-mRNA-1 |
| tig0024141 | CDS | 59682 | 59816 | 59682 | ID=Msa1414760-mRNA-1:cds;Parent=Msa1414760-mRNA-1 |
| tig0024141 | CDS | 60243 | 60497 | 60243 | ID=Msa1414760-mRNA-1:cds;Parent=Msa1414760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
