Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415080 | sp|Q9T072|BH025_ARATH | 43.503 | 177 | 97 | 2 | 93 | 267 | 129 | 304 | 1.85e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415080 | A0A072TRP6 | 74.721 | 269 | 66 | 2 | 1 | 269 | 1 | 267 | 1.37e-136 | 395 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1415080 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415080 | MtrunA17_Chr2g0333541 | 67.416 | 267 | 67 | 4 | 1 | 267 | 1 | 247 | 1.46e-107 | 312 |
| Msa1415080 | MtrunA17_Chr8g0368371 | 80.986 | 142 | 25 | 2 | 1 | 142 | 1 | 140 | 5.93e-74 | 222 |
| Msa1415080 | MtrunA17_Chr2g0333621 | 40.075 | 267 | 139 | 6 | 13 | 267 | 33 | 290 | 6.68e-49 | 164 |
| Msa1415080 | MtrunA17_Chr4g0002801 | 36.770 | 291 | 148 | 8 | 14 | 270 | 24 | 312 | 4.81e-47 | 159 |
| Msa1415080 | MtrunA17_Chr8g0336681 | 43.636 | 220 | 108 | 5 | 65 | 269 | 98 | 316 | 2.59e-45 | 155 |
| Msa1415080 | MtrunA17_Chr2g0333641 | 39.259 | 270 | 133 | 10 | 13 | 267 | 33 | 286 | 5.69e-43 | 148 |
| Msa1415080 | MtrunA17_Chr4g0002781 | 40.741 | 216 | 113 | 5 | 65 | 267 | 115 | 328 | 1.09e-41 | 146 |
| Msa1415080 | MtrunA17_Chr5g0400621 | 44.118 | 170 | 89 | 3 | 99 | 267 | 144 | 308 | 1.64e-38 | 137 |
| Msa1415080 | MtrunA17_Chr2g0333611 | 44.199 | 181 | 79 | 6 | 96 | 267 | 27 | 194 | 5.11e-36 | 128 |
| Msa1415080 | MtrunA17_Chr4g0054561 | 39.881 | 168 | 87 | 4 | 107 | 269 | 148 | 306 | 5.30e-36 | 130 |
| Msa1415080 | MtrunA17_Chr5g0400671 | 41.143 | 175 | 94 | 3 | 97 | 269 | 137 | 304 | 5.36e-36 | 130 |
| Msa1415080 | MtrunA17_Chr5g0400661 | 42.373 | 177 | 90 | 4 | 103 | 267 | 137 | 313 | 7.35e-35 | 128 |
| Msa1415080 | MtrunA17_Chr5g0400641 | 41.830 | 153 | 85 | 3 | 117 | 268 | 1 | 150 | 1.92e-34 | 122 |
| Msa1415080 | MtrunA17_Chr2g0280161 | 41.509 | 159 | 90 | 2 | 110 | 267 | 173 | 329 | 2.25e-34 | 127 |
| Msa1415080 | MtrunA17_Chr7g0225901 | 38.690 | 168 | 97 | 3 | 103 | 268 | 77 | 240 | 7.53e-33 | 120 |
| Msa1415080 | MtrunA17_Chr7g0249811 | 37.768 | 233 | 127 | 5 | 39 | 269 | 93 | 309 | 9.67e-33 | 122 |
| Msa1415080 | MtrunA17_Chr4g0054581 | 38.122 | 181 | 109 | 3 | 90 | 267 | 173 | 353 | 1.37e-32 | 122 |
| Msa1415080 | MtrunA17_Chr2g0307131 | 38.333 | 180 | 106 | 3 | 90 | 267 | 154 | 330 | 2.78e-32 | 121 |
| Msa1415080 | MtrunA17_Chr4g0054551 | 38.690 | 168 | 89 | 4 | 107 | 269 | 148 | 306 | 5.42e-32 | 120 |
| Msa1415080 | MtrunA17_Chr2g0307141 | 40.000 | 155 | 89 | 2 | 114 | 267 | 183 | 334 | 3.55e-31 | 119 |
| Msa1415080 | MtrunA17_Chr4g0049331 | 40.127 | 157 | 90 | 3 | 114 | 269 | 135 | 288 | 4.09e-31 | 117 |
| Msa1415080 | MtrunA17_Chr4g0033391 | 32.130 | 277 | 160 | 10 | 10 | 267 | 28 | 295 | 6.78e-31 | 117 |
| Msa1415080 | MtrunA17_Chr4g0033291 | 41.566 | 166 | 90 | 4 | 103 | 267 | 144 | 303 | 7.14e-31 | 117 |
| Msa1415080 | MtrunA17_Chr6g0468491 | 39.779 | 181 | 102 | 5 | 90 | 267 | 112 | 288 | 2.47e-30 | 115 |
| Msa1415080 | MtrunA17_Chr4g0033281 | 32.753 | 287 | 151 | 8 | 10 | 267 | 27 | 300 | 3.14e-28 | 110 |
| Msa1415080 | MtrunA17_Chr4g0054571 | 39.773 | 176 | 94 | 5 | 100 | 267 | 137 | 308 | 1.60e-27 | 108 |
| Msa1415080 | MtrunA17_Chr6g0468461 | 37.017 | 181 | 95 | 4 | 90 | 268 | 148 | 311 | 2.16e-26 | 105 |
| Msa1415080 | MtrunA17_Chr4g0054621 | 30.045 | 223 | 133 | 6 | 51 | 267 | 111 | 316 | 3.26e-21 | 91.3 |
| Msa1415080 | MtrunA17_Chr4g0002851 | 37.255 | 153 | 73 | 4 | 118 | 269 | 47 | 177 | 2.58e-20 | 86.3 |
| Msa1415080 | MtrunA17_Chr4g0002831 | 38.562 | 153 | 78 | 6 | 117 | 267 | 45 | 183 | 1.40e-19 | 84.3 |
| Msa1415080 | MtrunA17_Chr7g0233441 | 33.333 | 153 | 84 | 4 | 118 | 269 | 42 | 177 | 5.23e-19 | 82.8 |
| Msa1415080 | MtrunA17_Chr5g0411341 | 25.478 | 157 | 104 | 3 | 111 | 254 | 490 | 646 | 1.12e-12 | 67.8 |
| Msa1415080 | MtrunA17_Chr8g0365711 | 24.664 | 223 | 143 | 7 | 65 | 265 | 179 | 398 | 1.25e-12 | 67.4 |
| Msa1415080 | MtrunA17_Chr1g0185621 | 24.277 | 173 | 115 | 4 | 84 | 248 | 450 | 614 | 4.55e-12 | 65.9 |
| Msa1415080 | MtrunA17_Chr2g0298751 | 25.381 | 197 | 136 | 5 | 84 | 269 | 21 | 217 | 1.29e-11 | 63.2 |
| Msa1415080 | MtrunA17_Chr7g0275821 | 23.313 | 163 | 108 | 2 | 111 | 270 | 249 | 397 | 2.20e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415080 | AT4G37850.2 | 43.503 | 177 | 97 | 2 | 93 | 267 | 129 | 304 | 1.88e-38 | 137 |
| Msa1415080 | AT4G37850.1 | 43.503 | 177 | 97 | 2 | 93 | 267 | 129 | 304 | 1.88e-38 | 137 |
| Msa1415080 | AT2G22750.2 | 50.000 | 166 | 81 | 2 | 106 | 269 | 118 | 283 | 2.21e-37 | 134 |
| Msa1415080 | AT2G22750.1 | 50.000 | 166 | 81 | 2 | 106 | 269 | 118 | 283 | 3.36e-37 | 134 |
| Msa1415080 | AT2G22750.5 | 50.000 | 166 | 81 | 2 | 106 | 269 | 142 | 307 | 3.46e-37 | 134 |
| Msa1415080 | AT2G22750.3 | 50.000 | 166 | 81 | 2 | 106 | 269 | 146 | 311 | 4.01e-37 | 134 |
| Msa1415080 | AT2G22750.4 | 50.000 | 166 | 81 | 2 | 106 | 269 | 146 | 311 | 5.56e-37 | 134 |
| Msa1415080 | AT2G22770.1 | 36.686 | 169 | 94 | 3 | 114 | 269 | 132 | 300 | 1.78e-26 | 105 |
| Msa1415080 | AT2G22760.1 | 30.049 | 203 | 139 | 3 | 69 | 269 | 74 | 275 | 5.72e-26 | 103 |
| Msa1415080 | AT2G22760.2 | 30.198 | 202 | 138 | 3 | 69 | 268 | 74 | 274 | 6.00e-26 | 103 |
| Msa1415080 | AT4G29930.1 | 25.571 | 219 | 140 | 6 | 72 | 269 | 11 | 227 | 1.03e-16 | 77.8 |
| Msa1415080 | AT4G29930.6 | 27.451 | 204 | 129 | 6 | 72 | 269 | 11 | 201 | 1.87e-16 | 76.6 |
| Msa1415080 | AT4G29930.3 | 25.229 | 218 | 140 | 6 | 72 | 268 | 11 | 226 | 8.65e-16 | 75.5 |
| Msa1415080 | AT4G29930.7 | 25.229 | 218 | 140 | 6 | 72 | 268 | 11 | 226 | 8.65e-16 | 75.5 |
| Msa1415080 | AT4G29930.2 | 26.961 | 204 | 127 | 5 | 72 | 269 | 11 | 198 | 9.17e-16 | 74.7 |
| Msa1415080 | AT4G09820.1 | 33.333 | 153 | 75 | 4 | 102 | 253 | 351 | 477 | 1.42e-15 | 76.6 |
| Msa1415080 | AT5G57150.1 | 24.390 | 205 | 147 | 4 | 72 | 269 | 12 | 215 | 2.69e-15 | 73.9 |
| Msa1415080 | AT4G17880.1 | 26.512 | 215 | 110 | 7 | 69 | 254 | 363 | 558 | 3.67e-15 | 75.5 |
| Msa1415080 | AT4G29930.5 | 26.601 | 203 | 127 | 5 | 72 | 268 | 11 | 197 | 9.35e-15 | 72.0 |
| Msa1415080 | AT5G57150.5 | 24.138 | 203 | 146 | 4 | 72 | 267 | 12 | 213 | 1.21e-14 | 71.6 |
| Msa1415080 | AT5G46760.1 | 28.659 | 164 | 83 | 5 | 111 | 254 | 412 | 561 | 3.42e-14 | 72.8 |
| Msa1415080 | AT1G32640.1 | 27.632 | 152 | 97 | 3 | 111 | 254 | 449 | 595 | 2.51e-13 | 70.1 |
| Msa1415080 | AT5G57150.3 | 25.510 | 196 | 135 | 5 | 84 | 269 | 25 | 219 | 2.65e-13 | 67.8 |
| Msa1415080 | AT5G57150.2 | 23.834 | 193 | 139 | 4 | 84 | 269 | 25 | 216 | 3.80e-13 | 67.4 |
| Msa1415080 | AT5G57150.4 | 24.084 | 191 | 137 | 4 | 84 | 267 | 25 | 214 | 1.41e-12 | 66.6 |
| Msa1415080 | AT1G63650.3 | 28.289 | 152 | 92 | 3 | 111 | 246 | 402 | 552 | 6.09e-12 | 65.9 |
| Msa1415080 | AT1G63650.1 | 28.289 | 152 | 92 | 3 | 111 | 246 | 402 | 552 | 6.09e-12 | 65.9 |
| Msa1415080 | AT1G63650.2 | 28.289 | 152 | 92 | 3 | 111 | 246 | 402 | 552 | 6.09e-12 | 65.9 |
| Msa1415080 | AT5G41315.3 | 27.564 | 156 | 93 | 3 | 111 | 246 | 443 | 598 | 2.53e-11 | 63.9 |
| Msa1415080 | AT5G41315.2 | 27.564 | 156 | 93 | 3 | 111 | 246 | 446 | 601 | 2.65e-11 | 63.9 |
| Msa1415080 | AT5G41315.1 | 27.564 | 156 | 93 | 3 | 111 | 246 | 438 | 593 | 2.69e-11 | 63.9 |
| Msa1415080 | AT2G46510.1 | 29.565 | 115 | 60 | 3 | 111 | 225 | 392 | 485 | 4.46e-11 | 63.2 |
Find 54 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTGAAGTGAGGGTTCT+AGG | 0.256835 | tig0024171:-15369 | Msa1415080:CDS |
| ACTAGGCCAGTTGTGAAAAT+AGG | 0.274393 | tig0024171:+16036 | None:intergenic |
| TGGCACTGTCATTGTAATTA+AGG | 0.295958 | tig0024171:+15442 | None:intergenic |
| CAAGACATTGGTAGTTGTTA+TGG | 0.303801 | tig0024171:+15260 | None:intergenic |
| ACTACCAATGTCTTGCCATT+TGG | 0.326554 | tig0024171:-15252 | Msa1415080:CDS |
| ATTACTTGCCTGAGCAATAA+TGG | 0.372110 | tig0024171:+15212 | None:intergenic |
| AGTATATAAGTTGTTGGTAT+TGG | 0.379293 | tig0024171:+15943 | None:intergenic |
| ACATAATAACAGAGAGGAAC+AGG | 0.423437 | tig0024171:-15786 | Msa1415080:CDS |
| CTCTTCATCAAATATGTTGT+TGG | 0.428970 | tig0024171:+16107 | None:intergenic |
| CTAGGCCAGTTGTGAAAATA+GGG | 0.436339 | tig0024171:+16037 | None:intergenic |
| TAAGACAGTATATAAGTTGT+TGG | 0.443854 | tig0024171:+15937 | None:intergenic |
| ATGAACACTAAAGAATGTTA+TGG | 0.445823 | tig0024171:-15411 | Msa1415080:CDS |
| AGCTTGAAGTGAGGGTTCTA+GGG | 0.452434 | tig0024171:-15368 | Msa1415080:CDS |
| TCTGATTCATGATATCTTTG+AGG | 0.462411 | tig0024171:+16082 | None:intergenic |
| ATTTATACCTGGATTGAAGA+AGG | 0.472752 | tig0024171:-15725 | Msa1415080:intron |
| TAACATCACCATTATTGCTC+AGG | 0.473971 | tig0024171:-15220 | Msa1415080:CDS |
| TCTTCTTTGAATTCGACCCT+TGG | 0.481461 | tig0024171:+15836 | None:intergenic |
| AAGGAGATGAGATCTTGTTA+TGG | 0.492453 | tig0024171:+15461 | None:intergenic |
| AGAACCCTCACTTCAAGCTC+TGG | 0.495246 | tig0024171:+15372 | None:intergenic |
| GAAGAAGACATCAAGAAGAA+AGG | 0.507699 | tig0024171:-15501 | Msa1415080:CDS |
| GACATCAAGAAGAAAGGTGC+AGG | 0.512048 | tig0024171:-15495 | Msa1415080:CDS |
| TTTGCCTTTGTCATCATCAA+AGG | 0.512672 | tig0024171:-15866 | Msa1415080:CDS |
| TGTTGAATGAGAGACATTGA+TGG | 0.516688 | tig0024171:+15999 | None:intergenic |
| GATTCGCTGTGGGAAGCAAA+AGG | 0.520238 | tig0024171:-15328 | Msa1415080:CDS |
| AGACTAACCTTCTTCAATCC+AGG | 0.524279 | tig0024171:+15718 | None:intergenic |
| ATTTCCAGAGCTTGAAGTGA+GGG | 0.525230 | tig0024171:-15376 | Msa1415080:CDS |
| ATGACAAAGGCAAAGAATCA+TGG | 0.529186 | tig0024171:+15875 | None:intergenic |
| ATGTTAAGAGTGTTTCCAAA+TGG | 0.530024 | tig0024171:+15237 | None:intergenic |
| GAACTTTCAGCATTTATACC+TGG | 0.532111 | tig0024171:-15736 | Msa1415080:CDS |
| TTTAGTGTTCATTTCACCCA+TGG | 0.540015 | tig0024171:+15422 | None:intergenic |
| AGTTGTGAAAATAGGGACAC+TGG | 0.546854 | tig0024171:+16044 | None:intergenic |
| ACGGACAAGGTTCATGTACT+AGG | 0.549231 | tig0024171:-15573 | Msa1415080:CDS |
| TGGACGAGTTGTTGTTGACT+AGG | 0.551791 | tig0024171:+16019 | None:intergenic |
| TGTTGGTATTGGTAATGAGC+TGG | 0.555632 | tig0024171:+15954 | None:intergenic |
| GAATCATGGTGTTGTTCAGT+TGG | 0.556807 | tig0024171:+15889 | None:intergenic |
| AATTACAATGACAGTGCCAT+GGG | 0.574092 | tig0024171:-15438 | Msa1415080:CDS |
| AGTTGGTGGTAACAATGTAG+TGG | 0.574871 | tig0024171:+15906 | None:intergenic |
| GTTTCCAAATGGCAAGACAT+TGG | 0.577033 | tig0024171:+15248 | None:intergenic |
| TGAAGTGAGGGTTCTAGGGA+AGG | 0.581565 | tig0024171:-15364 | Msa1415080:CDS |
| TAATTACAATGACAGTGCCA+TGG | 0.581993 | tig0024171:-15439 | Msa1415080:CDS |
| GGGACACTGGGTTGATCTTG+TGG | 0.587098 | tig0024171:+16057 | None:intergenic |
| CATTTCCAGAGCTTGAAGTG+AGG | 0.591406 | tig0024171:-15377 | Msa1415080:CDS |
| TCATCAAAGGCTAACAACCA+AGG | 0.608148 | tig0024171:-15853 | Msa1415080:CDS |
| TCATGGTGTTGTTCAGTTGG+TGG | 0.611030 | tig0024171:+15892 | None:intergenic |
| TTAGCCTTTGATGATGACAA+AGG | 0.628673 | tig0024171:+15862 | None:intergenic |
| AATGGCTGTGTAGACGGACA+AGG | 0.629049 | tig0024171:-15586 | Msa1415080:intron |
| TGTTAATCAAGATTCGCTGT+GGG | 0.635001 | tig0024171:-15338 | Msa1415080:CDS |
| GTTGTGAAAATAGGGACACT+GGG | 0.635399 | tig0024171:+16045 | None:intergenic |
| CATCAAAGGCTAACAACCAA+GGG | 0.638491 | tig0024171:-15852 | Msa1415080:CDS |
| GTGTTAATCAAGATTCGCTG+TGG | 0.639073 | tig0024171:-15339 | Msa1415080:CDS |
| TGGGAAGCAAAAGGAAATTG+TGG | 0.662297 | tig0024171:-15319 | Msa1415080:CDS |
| GCTCTGGAAATGTTTCATTG+TGG | 0.678911 | tig0024171:+15388 | None:intergenic |
| AGGAGAAGCTGTCAAGTACG+TGG | 0.701643 | tig0024171:-15553 | Msa1415080:CDS |
| TAGATCACATAATAACAGAG+AGG | 0.731708 | tig0024171:-15792 | Msa1415080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTTTTTTTTTTTTTTG+TGG | + | tig0024171:15992-16011 | None:intergenic | 10.0% |
| !!! | ATTGTTTTTTTTTTTTTTTG+TGG | + | tig0024171:15992-16011 | None:intergenic | 10.0% |
| !! | AAAAAAATTAAGAAAGGAAT+TGG | + | tig0024171:15509-15528 | None:intergenic | 15.0% |
| !! | AAAAAAATTAAGAAAGGAAT+TGG | + | tig0024171:15509-15528 | None:intergenic | 15.0% |
| !!! | TCCTTTCTTAATTTTTTTTC+TGG | - | tig0024171:15511-15530 | Msa1415080:CDS | 20.0% |
| !! | TCCAGAAAAAAAATTAAGAA+AGG | + | tig0024171:15515-15534 | None:intergenic | 20.0% |
| !!! | ACTTTTATAGTAGTTATCAT+TGG | - | tig0024171:15542-15561 | Msa1415080:CDS | 20.0% |
| !! | CTATAAAATGACTTATCTAA+TGG | - | tig0024171:15572-15591 | Msa1415080:CDS | 20.0% |
| !! | GAAACTTACATTGTAATATA+TGG | + | tig0024171:16089-16108 | None:intergenic | 20.0% |
| !!! | TCCTTTCTTAATTTTTTTTC+TGG | - | tig0024171:15511-15530 | Msa1415080:CDS | 20.0% |
| !! | TCCAGAAAAAAAATTAAGAA+AGG | + | tig0024171:15515-15534 | None:intergenic | 20.0% |
| !!! | ACTTTTATAGTAGTTATCAT+TGG | - | tig0024171:15542-15561 | Msa1415080:CDS | 20.0% |
| !! | CTATAAAATGACTTATCTAA+TGG | - | tig0024171:15572-15591 | Msa1415080:CDS | 20.0% |
| !! | GAAACTTACATTGTAATATA+TGG | + | tig0024171:16089-16108 | None:intergenic | 20.0% |
| ! | AGTATATAAGTTGTTGGTAT+TGG | + | tig0024171:15236-15255 | None:intergenic | 25.0% |
| ! | TAAGACAGTATATAAGTTGT+TGG | + | tig0024171:15242-15261 | None:intergenic | 25.0% |
| ! | ATGAACACTAAAGAATGTTA+TGG | - | tig0024171:15765-15784 | Msa1415080:CDS | 25.0% |
| !! | TTTGTAATTGATTCTACAGA+TGG | - | tig0024171:16125-16144 | Msa1415080:CDS | 25.0% |
| !! | TTGTAATTGATTCTACAGAT+GGG | - | tig0024171:16126-16145 | Msa1415080:CDS | 25.0% |
| ! | AGTATATAAGTTGTTGGTAT+TGG | + | tig0024171:15236-15255 | None:intergenic | 25.0% |
| ! | TAAGACAGTATATAAGTTGT+TGG | + | tig0024171:15242-15261 | None:intergenic | 25.0% |
| ! | ATGAACACTAAAGAATGTTA+TGG | - | tig0024171:15765-15784 | Msa1415080:CDS | 25.0% |
| !! | TTTGTAATTGATTCTACAGA+TGG | - | tig0024171:16125-16144 | Msa1415080:CDS | 25.0% |
| !! | TTGTAATTGATTCTACAGAT+GGG | - | tig0024171:16126-16145 | Msa1415080:CDS | 25.0% |
| CTCTTCATCAAATATGTTGT+TGG | + | tig0024171:15072-15091 | None:intergenic | 30.0% | |
| TCTGATTCATGATATCTTTG+AGG | + | tig0024171:15097-15116 | None:intergenic | 30.0% | |
| TAGATCACATAATAACAGAG+AGG | - | tig0024171:15384-15403 | Msa1415080:CDS | 30.0% | |
| ATTTATACCTGGATTGAAGA+AGG | - | tig0024171:15451-15470 | Msa1415080:CDS | 30.0% | |
| !! | ATGTTAAGAGTGTTTCCAAA+TGG | + | tig0024171:15942-15961 | None:intergenic | 30.0% |
| GATAAGAATCAAACTTGAGT+TGG | + | tig0024171:16043-16062 | None:intergenic | 30.0% | |
| CTCTTCATCAAATATGTTGT+TGG | + | tig0024171:15072-15091 | None:intergenic | 30.0% | |
| TCTGATTCATGATATCTTTG+AGG | + | tig0024171:15097-15116 | None:intergenic | 30.0% | |
| TAGATCACATAATAACAGAG+AGG | - | tig0024171:15384-15403 | Msa1415080:CDS | 30.0% | |
| ATTTATACCTGGATTGAAGA+AGG | - | tig0024171:15451-15470 | Msa1415080:CDS | 30.0% | |
| !! | ATGTTAAGAGTGTTTCCAAA+TGG | + | tig0024171:15942-15961 | None:intergenic | 30.0% |
| GATAAGAATCAAACTTGAGT+TGG | + | tig0024171:16043-16062 | None:intergenic | 30.0% | |
| TGTTGAATGAGAGACATTGA+TGG | + | tig0024171:15180-15199 | None:intergenic | 35.0% | |
| ATGACAAAGGCAAAGAATCA+TGG | + | tig0024171:15304-15323 | None:intergenic | 35.0% | |
| TTTGCCTTTGTCATCATCAA+AGG | - | tig0024171:15310-15329 | Msa1415080:CDS | 35.0% | |
| !! | TTAGCCTTTGATGATGACAA+AGG | + | tig0024171:15317-15336 | None:intergenic | 35.0% |
| ACATAATAACAGAGAGGAAC+AGG | - | tig0024171:15390-15409 | Msa1415080:CDS | 35.0% | |
| GAACTTTCAGCATTTATACC+TGG | - | tig0024171:15440-15459 | Msa1415080:CDS | 35.0% | |
| TTATCTAATGGCTGTGTAGA+CGG | - | tig0024171:15584-15603 | Msa1415080:intron | 35.0% | |
| GAAGAAGACATCAAGAAGAA+AGG | - | tig0024171:15675-15694 | Msa1415080:intron | 35.0% | |
| AAGGAGATGAGATCTTGTTA+TGG | + | tig0024171:15718-15737 | None:intergenic | 35.0% | |
| TGGCACTGTCATTGTAATTA+AGG | + | tig0024171:15737-15756 | None:intergenic | 35.0% | |
| TAATTACAATGACAGTGCCA+TGG | - | tig0024171:15737-15756 | Msa1415080:CDS | 35.0% | |
| AATTACAATGACAGTGCCAT+GGG | - | tig0024171:15738-15757 | Msa1415080:CDS | 35.0% | |
| TTTAGTGTTCATTTCACCCA+TGG | + | tig0024171:15757-15776 | None:intergenic | 35.0% | |
| TGTTAATCAAGATTCGCTGT+GGG | - | tig0024171:15838-15857 | Msa1415080:CDS | 35.0% | |
| ! | CAAGACATTGGTAGTTGTTA+TGG | + | tig0024171:15919-15938 | None:intergenic | 35.0% |
| TAACATCACCATTATTGCTC+AGG | - | tig0024171:15956-15975 | Msa1415080:CDS | 35.0% | |
| ATTACTTGCCTGAGCAATAA+TGG | + | tig0024171:15967-15986 | None:intergenic | 35.0% | |
| TGTTGAATGAGAGACATTGA+TGG | + | tig0024171:15180-15199 | None:intergenic | 35.0% | |
| ATGACAAAGGCAAAGAATCA+TGG | + | tig0024171:15304-15323 | None:intergenic | 35.0% | |
| TTTGCCTTTGTCATCATCAA+AGG | - | tig0024171:15310-15329 | Msa1415080:CDS | 35.0% | |
| !! | TTAGCCTTTGATGATGACAA+AGG | + | tig0024171:15317-15336 | None:intergenic | 35.0% |
| ACATAATAACAGAGAGGAAC+AGG | - | tig0024171:15390-15409 | Msa1415080:CDS | 35.0% | |
| GAACTTTCAGCATTTATACC+TGG | - | tig0024171:15440-15459 | Msa1415080:CDS | 35.0% | |
| TTATCTAATGGCTGTGTAGA+CGG | - | tig0024171:15584-15603 | Msa1415080:intron | 35.0% | |
| GAAGAAGACATCAAGAAGAA+AGG | - | tig0024171:15675-15694 | Msa1415080:intron | 35.0% | |
| AAGGAGATGAGATCTTGTTA+TGG | + | tig0024171:15718-15737 | None:intergenic | 35.0% | |
| TGGCACTGTCATTGTAATTA+AGG | + | tig0024171:15737-15756 | None:intergenic | 35.0% | |
| TAATTACAATGACAGTGCCA+TGG | - | tig0024171:15737-15756 | Msa1415080:CDS | 35.0% | |
| AATTACAATGACAGTGCCAT+GGG | - | tig0024171:15738-15757 | Msa1415080:CDS | 35.0% | |
| TTTAGTGTTCATTTCACCCA+TGG | + | tig0024171:15757-15776 | None:intergenic | 35.0% | |
| TGTTAATCAAGATTCGCTGT+GGG | - | tig0024171:15838-15857 | Msa1415080:CDS | 35.0% | |
| ! | CAAGACATTGGTAGTTGTTA+TGG | + | tig0024171:15919-15938 | None:intergenic | 35.0% |
| TAACATCACCATTATTGCTC+AGG | - | tig0024171:15956-15975 | Msa1415080:CDS | 35.0% | |
| ATTACTTGCCTGAGCAATAA+TGG | + | tig0024171:15967-15986 | None:intergenic | 35.0% | |
| GTTGTGAAAATAGGGACACT+GGG | + | tig0024171:15134-15153 | None:intergenic | 40.0% | |
| AGTTGTGAAAATAGGGACAC+TGG | + | tig0024171:15135-15154 | None:intergenic | 40.0% | |
| ! | AGTGTCCCTATTTTCACAAC+TGG | - | tig0024171:15134-15153 | Msa1415080:intron | 40.0% |
| CTAGGCCAGTTGTGAAAATA+GGG | + | tig0024171:15142-15161 | None:intergenic | 40.0% | |
| ACTAGGCCAGTTGTGAAAAT+AGG | + | tig0024171:15143-15162 | None:intergenic | 40.0% | |
| !! | TGTTGGTATTGGTAATGAGC+TGG | + | tig0024171:15225-15244 | None:intergenic | 40.0% |
| !! | AGTTGGTGGTAACAATGTAG+TGG | + | tig0024171:15273-15292 | None:intergenic | 40.0% |
| !! | GAATCATGGTGTTGTTCAGT+TGG | + | tig0024171:15290-15309 | None:intergenic | 40.0% |
| TCATCAAAGGCTAACAACCA+AGG | - | tig0024171:15323-15342 | Msa1415080:CDS | 40.0% | |
| CATCAAAGGCTAACAACCAA+GGG | - | tig0024171:15324-15343 | Msa1415080:CDS | 40.0% | |
| TCTTCTTTGAATTCGACCCT+TGG | + | tig0024171:15343-15362 | None:intergenic | 40.0% | |
| AGACTAACCTTCTTCAATCC+AGG | + | tig0024171:15461-15480 | None:intergenic | 40.0% | |
| !! | GCTCTGGAAATGTTTCATTG+TGG | + | tig0024171:15791-15810 | None:intergenic | 40.0% |
| ATTTCCAGAGCTTGAAGTGA+GGG | - | tig0024171:15800-15819 | Msa1415080:CDS | 40.0% | |
| GTGTTAATCAAGATTCGCTG+TGG | - | tig0024171:15837-15856 | Msa1415080:CDS | 40.0% | |
| TGGGAAGCAAAAGGAAATTG+TGG | - | tig0024171:15857-15876 | Msa1415080:CDS | 40.0% | |
| ACTACCAATGTCTTGCCATT+TGG | - | tig0024171:15924-15943 | Msa1415080:CDS | 40.0% | |
| GTTTCCAAATGGCAAGACAT+TGG | + | tig0024171:15931-15950 | None:intergenic | 40.0% | |
| GTTGTGAAAATAGGGACACT+GGG | + | tig0024171:15134-15153 | None:intergenic | 40.0% | |
| AGTTGTGAAAATAGGGACAC+TGG | + | tig0024171:15135-15154 | None:intergenic | 40.0% | |
| ! | AGTGTCCCTATTTTCACAAC+TGG | - | tig0024171:15134-15153 | Msa1415080:intron | 40.0% |
| CTAGGCCAGTTGTGAAAATA+GGG | + | tig0024171:15142-15161 | None:intergenic | 40.0% | |
| ACTAGGCCAGTTGTGAAAAT+AGG | + | tig0024171:15143-15162 | None:intergenic | 40.0% | |
| !! | TGTTGGTATTGGTAATGAGC+TGG | + | tig0024171:15225-15244 | None:intergenic | 40.0% |
| !! | AGTTGGTGGTAACAATGTAG+TGG | + | tig0024171:15273-15292 | None:intergenic | 40.0% |
| !! | GAATCATGGTGTTGTTCAGT+TGG | + | tig0024171:15290-15309 | None:intergenic | 40.0% |
| TCATCAAAGGCTAACAACCA+AGG | - | tig0024171:15323-15342 | Msa1415080:CDS | 40.0% | |
| CATCAAAGGCTAACAACCAA+GGG | - | tig0024171:15324-15343 | Msa1415080:CDS | 40.0% | |
| TCTTCTTTGAATTCGACCCT+TGG | + | tig0024171:15343-15362 | None:intergenic | 40.0% | |
| AGACTAACCTTCTTCAATCC+AGG | + | tig0024171:15461-15480 | None:intergenic | 40.0% | |
| !! | GCTCTGGAAATGTTTCATTG+TGG | + | tig0024171:15791-15810 | None:intergenic | 40.0% |
| ATTTCCAGAGCTTGAAGTGA+GGG | - | tig0024171:15800-15819 | Msa1415080:CDS | 40.0% | |
| GTGTTAATCAAGATTCGCTG+TGG | - | tig0024171:15837-15856 | Msa1415080:CDS | 40.0% | |
| TGGGAAGCAAAAGGAAATTG+TGG | - | tig0024171:15857-15876 | Msa1415080:CDS | 40.0% | |
| ACTACCAATGTCTTGCCATT+TGG | - | tig0024171:15924-15943 | Msa1415080:CDS | 40.0% | |
| GTTTCCAAATGGCAAGACAT+TGG | + | tig0024171:15931-15950 | None:intergenic | 40.0% | |
| ! | TGGACGAGTTGTTGTTGACT+AGG | + | tig0024171:15160-15179 | None:intergenic | 45.0% |
| !! | TCATGGTGTTGTTCAGTTGG+TGG | + | tig0024171:15287-15306 | None:intergenic | 45.0% |
| ACGGACAAGGTTCATGTACT+AGG | - | tig0024171:15603-15622 | Msa1415080:intron | 45.0% | |
| ! | GACATCAAGAAGAAAGGTGC+AGG | - | tig0024171:15681-15700 | Msa1415080:intron | 45.0% |
| CATTTCCAGAGCTTGAAGTG+AGG | - | tig0024171:15799-15818 | Msa1415080:CDS | 45.0% | |
| AGCTTGAAGTGAGGGTTCTA+GGG | - | tig0024171:15808-15827 | Msa1415080:CDS | 45.0% | |
| ! | TGGACGAGTTGTTGTTGACT+AGG | + | tig0024171:15160-15179 | None:intergenic | 45.0% |
| !! | TCATGGTGTTGTTCAGTTGG+TGG | + | tig0024171:15287-15306 | None:intergenic | 45.0% |
| ACGGACAAGGTTCATGTACT+AGG | - | tig0024171:15603-15622 | Msa1415080:intron | 45.0% | |
| ! | GACATCAAGAAGAAAGGTGC+AGG | - | tig0024171:15681-15700 | Msa1415080:intron | 45.0% |
| CATTTCCAGAGCTTGAAGTG+AGG | - | tig0024171:15799-15818 | Msa1415080:CDS | 45.0% | |
| AGCTTGAAGTGAGGGTTCTA+GGG | - | tig0024171:15808-15827 | Msa1415080:CDS | 45.0% | |
| !! | TATATTATAGTAATTAAATT+TGG | + | tig0024171:16065-16084 | None:intergenic | 5.0% |
| !! | TATATTATAGTAATTAAATT+TGG | + | tig0024171:16065-16084 | None:intergenic | 5.0% |
| AATGGCTGTGTAGACGGACA+AGG | - | tig0024171:15590-15609 | Msa1415080:intron | 50.0% | |
| AGGAGAAGCTGTCAAGTACG+TGG | - | tig0024171:15623-15642 | Msa1415080:intron | 50.0% | |
| AGAACCCTCACTTCAAGCTC+TGG | + | tig0024171:15807-15826 | None:intergenic | 50.0% | |
| GAGCTTGAAGTGAGGGTTCT+AGG | - | tig0024171:15807-15826 | Msa1415080:CDS | 50.0% | |
| !! | TGAAGTGAGGGTTCTAGGGA+AGG | - | tig0024171:15812-15831 | Msa1415080:CDS | 50.0% |
| GATTCGCTGTGGGAAGCAAA+AGG | - | tig0024171:15848-15867 | Msa1415080:CDS | 50.0% | |
| AATGGCTGTGTAGACGGACA+AGG | - | tig0024171:15590-15609 | Msa1415080:intron | 50.0% | |
| AGGAGAAGCTGTCAAGTACG+TGG | - | tig0024171:15623-15642 | Msa1415080:intron | 50.0% | |
| AGAACCCTCACTTCAAGCTC+TGG | + | tig0024171:15807-15826 | None:intergenic | 50.0% | |
| GAGCTTGAAGTGAGGGTTCT+AGG | - | tig0024171:15807-15826 | Msa1415080:CDS | 50.0% | |
| !! | TGAAGTGAGGGTTCTAGGGA+AGG | - | tig0024171:15812-15831 | Msa1415080:CDS | 50.0% |
| GATTCGCTGTGGGAAGCAAA+AGG | - | tig0024171:15848-15867 | Msa1415080:CDS | 50.0% | |
| !! | GGGACACTGGGTTGATCTTG+TGG | + | tig0024171:15122-15141 | None:intergenic | 55.0% |
| !! | GGGACACTGGGTTGATCTTG+TGG | + | tig0024171:15122-15141 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024171 | gene | 15047 | 16151 | 15047 | ID=Msa1415080;Name=Msa1415080 |
| tig0024171 | mRNA | 15047 | 16151 | 15047 | ID=Msa1415080-mRNA-1;Parent=Msa1415080;Name=Msa1415080-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0|0|1|1|1|3|0|270 |
| tig0024171 | exon | 15726 | 16151 | 15726 | ID=Msa1415080-mRNA-1:exon:22180;Parent=Msa1415080-mRNA-1 |
| tig0024171 | exon | 15217 | 15595 | 15217 | ID=Msa1415080-mRNA-1:exon:22179;Parent=Msa1415080-mRNA-1 |
| tig0024171 | exon | 15047 | 15054 | 15047 | ID=Msa1415080-mRNA-1:exon:22178;Parent=Msa1415080-mRNA-1 |
| tig0024171 | CDS | 15726 | 16151 | 15726 | ID=Msa1415080-mRNA-1:cds;Parent=Msa1415080-mRNA-1 |
| tig0024171 | CDS | 15217 | 15595 | 15217 | ID=Msa1415080-mRNA-1:cds;Parent=Msa1415080-mRNA-1 |
| tig0024171 | CDS | 15047 | 15054 | 15047 | ID=Msa1415080-mRNA-1:cds;Parent=Msa1415080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
