AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1415300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415300 MtrunA17_Chr5g0426961 87.055 842 79 7 1 817 1 837 0.0 1417
Msa1415300 MtrunA17_Chr1g0211711 75.403 683 147 5 151 816 374 1052 0.0 1066
Msa1415300 MtrunA17_Chr1g0183311 71.549 710 157 3 151 816 175 883 0.0 1017
Msa1415300 MtrunA17_Chr1g0211661 69.118 612 180 3 151 755 256 865 0.0 868
Msa1415300 MtrunA17_Chr5g0420361 64.363 651 189 9 191 805 145 788 0.0 834
Msa1415300 MtrunA17_Chr1g0211691 69.271 576 151 7 151 703 373 945 0.0 797
Msa1415300 MtrunA17_Chr6g0472441 60.856 654 187 11 191 805 87 710 0.0 770
Msa1415300 MtrunA17_Chr5g0448301 61.209 513 170 5 221 725 140 631 0.0 618
Msa1415300 MtrunA17_Chr2g0289121 49.256 672 293 11 151 812 186 819 0.0 597
Msa1415300 MtrunA17_Chr4g0075261 45.827 707 298 12 151 812 198 864 0.0 591
Msa1415300 MtrunA17_Chr2g0289031 58.247 388 158 2 427 812 8 393 3.58e-149 443
Msa1415300 MtrunA17_Chr7g0275771 37.139 762 373 18 151 813 171 925 1.84e-146 454
Msa1415300 MtrunA17_Chr1g0192011 35.352 710 367 11 151 813 297 961 6.04e-138 434
Msa1415300 MtrunA17_Chr1g0147021 44.311 501 238 13 151 645 901 1366 7.29e-115 383
Msa1415300 MtrunA17_Chr1g0147021 74.265 136 35 0 668 803 1551 1686 2.57e-58 217
Msa1415300 MtrunA17_Chr2g0281051 33.947 489 300 9 156 635 242 716 2.77e-75 264
Msa1415300 MtrunA17_Chr2g0281051 48.993 149 76 0 668 816 810 958 2.78e-40 160
Msa1415300 MtrunA17_Chr8g0364421 47.674 258 104 3 229 486 3 229 8.62e-69 227
Msa1415300 MtrunA17_Chr1g0211701 84.348 115 18 0 701 815 4 118 1.32e-63 210
Msa1415300 MtrunA17_Chr7g0231061 63.253 166 61 0 488 653 12 177 2.92e-62 208
Msa1415300 MtrunA17_Chr4g0048531 38.721 297 171 5 343 635 727 1016 3.95e-59 219
Msa1415300 MtrunA17_Chr4g0048531 53.378 148 65 2 667 811 1132 1278 4.93e-43 169
Msa1415300 MtrunA17_Chr4g0048531 38.462 130 75 2 157 281 296 425 1.03e-19 95.1
Msa1415300 MtrunA17_Chr8g0361381 49.261 203 99 1 407 609 10 208 3.93e-58 197
Msa1415300 MtrunA17_Chr2g0289091 61.224 147 47 2 641 777 274 420 1.62e-50 183
Msa1415300 MtrunA17_Chr2g0289091 55.172 145 64 1 498 642 20 163 1.55e-44 166
Msa1415300 MtrunA17_Chr2g0289041 40.000 200 111 4 151 350 11 201 8.77e-41 149
Msa1415300 MtrunA17_Chr8g0361391 74.157 89 22 1 667 755 50 137 1.36e-40 146
Msa1415300 MtrunA17_Chr8g0340381 65.414 133 27 3 522 654 36 149 2.63e-39 144
Msa1415300 MtrunA17_Chr1g0211671 77.419 62 14 0 754 815 15 76 2.21e-27 107
Msa1415300 MtrunA17_Chr8g0364411 56.098 82 35 1 151 232 64 144 5.14e-20 87.4
Msa1415300 MtrunA17_Chr2g0289101 34.884 129 78 3 253 380 8 131 2.40e-16 77.4
Msa1415300 MtrunA17_Chr3g0119761 61.667 60 23 0 595 654 55 114 1.37e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415300 AT1G11950.1 49.474 665 313 7 151 812 224 868 0.0 640
Msa1415300 AT1G11950.3 49.474 665 313 7 151 812 224 868 0.0 640
Msa1415300 AT1G62310.1 49.544 658 301 10 151 796 240 878 0.0 622
Msa1415300 AT3G07610.1 56.275 494 203 3 328 816 410 895 1.86e-180 546
Msa1415300 AT3G07610.1 41.071 168 98 1 148 315 182 348 3.75e-35 144
Msa1415300 AT1G11950.2 47.157 598 293 7 151 745 224 801 2.44e-179 536
Msa1415300 AT3G07610.3 53.996 513 207 4 328 816 410 917 1.71e-173 528
Msa1415300 AT3G07610.3 41.071 168 98 1 148 315 182 348 3.53e-35 144
Msa1415300 AT4G00990.3 43.050 518 255 11 151 656 112 601 1.44e-125 395
Msa1415300 AT4G00990.3 61.947 113 38 2 649 761 671 778 1.36e-35 145
Msa1415300 AT4G00990.2 43.050 518 255 11 151 656 112 601 2.22e-125 395
Msa1415300 AT4G00990.2 65.714 105 31 2 649 753 671 770 7.42e-35 143
Msa1415300 AT4G00990.1 43.050 518 255 11 151 656 112 601 5.27e-125 395
Msa1415300 AT4G00990.1 62.577 163 56 2 649 811 671 828 1.33e-57 212
Msa1415300 AT1G09060.2 32.062 708 383 17 151 813 237 891 1.01e-105 347
Msa1415300 AT1G09060.1 32.062 708 383 17 151 813 237 891 1.01e-105 347
Msa1415300 AT1G09060.4 32.062 708 383 17 151 813 251 905 1.64e-105 347
Msa1415300 AT1G09060.3 32.062 708 383 17 151 813 251 905 1.64e-105 347
Msa1415300 AT3G07610.2 54.514 288 124 2 328 615 410 690 1.11e-90 302
Msa1415300 AT3G07610.2 31.922 307 182 6 29 315 49 348 4.45e-35 143
Msa1415300 AT4G21430.1 29.202 702 409 11 156 816 262 916 3.63e-90 305

Find 193 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCACCATGCAGATAATT+TGG 0.163598 tig0024199:-54527 None:intergenic
GGATTTGTATATTCTTTAAA+TGG 0.213495 tig0024199:-55534 None:intergenic
AGTACATGCGCTCATCATTA+TGG 0.215750 tig0024199:-54273 None:intergenic
GTCCCTTAGATGGTGCTCTT+TGG 0.216539 tig0024199:+56442 Msa1415300:CDS
TCTTTACTGGGTACACAAAT+TGG 0.224530 tig0024199:+55400 Msa1415300:CDS
GATCTTCATCATGATGATTT+AGG 0.224559 tig0024199:+54917 Msa1415300:CDS
CTTCGTTGTGGGCAGCTTCT+AGG 0.236807 tig0024199:+54464 Msa1415300:CDS
TCCCTTAGATGGTGCTCTTT+GGG 0.260063 tig0024199:+56443 Msa1415300:CDS
AATGTGCACCAATTCTTTAC+TGG 0.265399 tig0024199:+55387 Msa1415300:CDS
ATCCCAAAGAGCACCATCTA+AGG 0.278061 tig0024199:-56445 None:intergenic
AGTACATTGCTGACAATTAC+AGG 0.278275 tig0024199:-54971 None:intergenic
AAACAAGAACAAGTCACTTT+TGG 0.285165 tig0024199:+55060 Msa1415300:CDS
TCACATTTAATCTCAGGTTT+TGG 0.298428 tig0024199:-54659 None:intergenic
CTTTCTTCAAATAGTTTAGA+AGG 0.302686 tig0024199:-55474 None:intergenic
TACCTCCAATTTGTCCTCTA+TGG 0.305460 tig0024199:-58851 None:intergenic
GGGCCAACTCTGTTTATCCT+TGG 0.314990 tig0024199:-55424 None:intergenic
TCATATTGCTGAAGCAAAAC+TGG 0.320106 tig0024199:+56293 Msa1415300:CDS
GCTCTTGTTTGAAGCCTGTT+AGG 0.324611 tig0024199:+54807 Msa1415300:CDS
ATTCATACATGGTCAAAATC+TGG 0.328898 tig0024199:+54602 Msa1415300:CDS
TCTATGGACCTGTGATTTAC+TGG 0.329135 tig0024199:-58835 None:intergenic
GGAGCTACATGGTGATATTC+AGG 0.343116 tig0024199:+56377 Msa1415300:CDS
AGCATGAGGTGCTTTGTATC+TGG 0.343621 tig0024199:-54564 None:intergenic
TTATTACCTCTGTTCCTAAC+AGG 0.344273 tig0024199:-54821 None:intergenic
ATGCCCGATGGTTAGATAAA+AGG 0.344516 tig0024199:-57343 None:intergenic
GGCCAACTCTGTTTATCCTT+GGG 0.359554 tig0024199:-55423 None:intergenic
AATCTTTCAATTTCAATACT+TGG 0.361395 tig0024199:-55446 None:intergenic
ATCTTTCAATTTCAATACTT+GGG 0.369127 tig0024199:-55445 None:intergenic
AAAATAGTTTGTTGGTTGGT+GGG 0.374504 tig0024199:+56418 Msa1415300:CDS
AGAAGCATTTCAGAGAGTTC+AGG 0.389778 tig0024199:+56511 Msa1415300:CDS
GTACATGCGCTCATCATTAT+GGG 0.392626 tig0024199:-54272 None:intergenic
AAGTATTGAAATTGAAAGAT+TGG 0.402565 tig0024199:+55448 Msa1415300:CDS
AGAGGACGTACCTGCATTGC+AGG 0.406514 tig0024199:+56479 Msa1415300:CDS
CAGCTCTTTGCAAAGAATCC+AGG 0.410316 tig0024199:+54864 Msa1415300:CDS
TCTTCCACATTTAATACGAT+TGG 0.410475 tig0024199:+53892 Msa1415300:CDS
TCTTTCTAGAATAGACATAA+TGG 0.411099 tig0024199:-52895 None:intergenic
GAAAATAGTTTGTTGGTTGG+TGG 0.412592 tig0024199:+56417 Msa1415300:CDS
TTCAATGGCACTGGAGCAAA+GGG 0.413215 tig0024199:+54945 Msa1415300:CDS
TTGTGTACCCAGTAAAGAAT+TGG 0.417175 tig0024199:-55395 None:intergenic
AATGTACTTGAATGTACATC+TGG 0.421952 tig0024199:+54986 Msa1415300:CDS
TATGGATTTGCTCAGGAGCT+TGG 0.422137 tig0024199:+55639 Msa1415300:CDS
TTTGACCATGTATGAATCTC+AGG 0.423895 tig0024199:-54596 None:intergenic
TTACCTTCAGATTTCGGACT+TGG 0.425214 tig0024199:-57554 None:intergenic
AAACCACCGGTAAACGTAAC+CGG 0.429322 tig0024199:+52981 Msa1415300:CDS
CCGTGATCACATTTAATCTC+AGG 0.429409 tig0024199:-54665 None:intergenic
AAAACAGACTCCTCACAATA+AGG 0.433520 tig0024199:+53180 Msa1415300:CDS
AAATAGTTTGTTGGTTGGTG+GGG 0.435362 tig0024199:+56419 Msa1415300:CDS
CTCCACCATGCAGATAATTT+GGG 0.435965 tig0024199:-54526 None:intergenic
AACAAACGCGGGAGCGGTGG+CGG 0.439355 tig0024199:+52925 Msa1415300:CDS
TTCAGATATTCCTGCAATGC+AGG 0.441628 tig0024199:-56489 None:intergenic
TGTTAAGGCACTTGATTGCT+TGG 0.447721 tig0024199:+55084 Msa1415300:CDS
AAGATAAACTCAAAATCAAA+TGG 0.449448 tig0024199:-54497 None:intergenic
TTCTTCTTGTCTAGCAAGAC+GGG 0.449462 tig0024199:-53079 None:intergenic
AATGTACATCTGGTTTAAGC+TGG 0.451500 tig0024199:+54996 Msa1415300:CDS
AAGAGCTTTGAGTATATACT+TGG 0.456205 tig0024199:-53870 None:intergenic
GACAAAATCAAGTGCAACCT+TGG 0.456526 tig0024199:-58758 None:intergenic
TCTGGCTTTAGAACTTCATC+AGG 0.461474 tig0024199:-55591 None:intergenic
GGTTACGTTTACCGGTGGTT+TGG 0.461832 tig0024199:-52979 None:intergenic
GTCAAAGAAATGACAGTGGC+AGG 0.462164 tig0024199:+53464 Msa1415300:intron
CAGGTCCATAGAGGACAAAT+TGG 0.466017 tig0024199:+58846 Msa1415300:CDS
TTCAGATTTCGGACTTGGTG+GGG 0.467992 tig0024199:-57549 None:intergenic
AATAGTTTGTTGGTTGGTGG+GGG 0.473031 tig0024199:+56420 Msa1415300:CDS
ATTTGCTCAGGAGCTTGGAC+GGG 0.473572 tig0024199:+55644 Msa1415300:CDS
GCAAAGCTTGTTTGAAGTCA+CGG 0.474647 tig0024199:+53688 Msa1415300:CDS
AGGCACTTGATTGCTTGGAT+TGG 0.475541 tig0024199:+55089 Msa1415300:CDS
CCTTCAGATTTCGGACTTGG+TGG 0.476898 tig0024199:-57551 None:intergenic
AAACGCGGGAGCGGTGGCGG+AGG 0.477252 tig0024199:+52928 Msa1415300:CDS
ACGATTGGATCAAGATCAAA+TGG 0.478348 tig0024199:+53907 Msa1415300:CDS
GATTTGCTCAGGAGCTTGGA+CGG 0.479287 tig0024199:+55643 Msa1415300:CDS
ACTACAGTCAATTAAAGAAA+AGG 0.482579 tig0024199:+53811 Msa1415300:intron
CATGCAGATAATTTGGGCCT+CGG 0.485358 tig0024199:-54520 None:intergenic
TATTGCTTATGGATTTGCTC+AGG 0.486399 tig0024199:+55632 Msa1415300:CDS
TGCGGAATTCCTCTGTCAAA+CGG 0.487229 tig0024199:-58807 None:intergenic
GTTGCCGTGAGCTTCGTTGT+GGG 0.489346 tig0024199:+54453 Msa1415300:CDS
ACTAACTTTACCTCCTCTAC+AGG 0.489467 tig0024199:-56549 None:intergenic
TGTGATTTACTGGAAGTTTG+CGG 0.491065 tig0024199:-58825 None:intergenic
ATGTGCACCAATTCTTTACT+GGG 0.492244 tig0024199:+55388 Msa1415300:CDS
CTTCAGATTTCGGACTTGGT+GGG 0.495361 tig0024199:-57550 None:intergenic
CAATGTTGAAAATAGTTTGT+TGG 0.495936 tig0024199:+56410 Msa1415300:CDS
ACTAACTCAGAGATGCAATC+TGG 0.506064 tig0024199:-54716 None:intergenic
GTTGTGGGCAGCTTCTAGGT+GGG 0.507656 tig0024199:+54468 Msa1415300:CDS
GGAAACCAACGATCATCATC+AGG 0.509624 tig0024199:+53838 Msa1415300:CDS
TGTATGTAGGTATTGAGCCT+TGG 0.510562 tig0024199:+57478 Msa1415300:intron
TGTATATTCTTTAAATGGCA+AGG 0.512473 tig0024199:-55529 None:intergenic
GATAAGAAGAACAGCAGTAA+AGG 0.512786 tig0024199:+53054 Msa1415300:CDS
CGTTGTGGGCAGCTTCTAGG+TGG 0.513332 tig0024199:+54467 Msa1415300:CDS
TTTCAATGGCACTGGAGCAA+AGG 0.515097 tig0024199:+54944 Msa1415300:CDS
TTTCTTCTTGTCTAGCAAGA+CGG 0.518400 tig0024199:-53080 None:intergenic
TCAAGATCAAATGGCTGAGA+AGG 0.518447 tig0024199:+53916 Msa1415300:CDS
GCTCCCTCTTGTCTTGCTCA+AGG 0.519343 tig0024199:-56359 None:intergenic
TTCATACATGGTCAAAATCT+GGG 0.519684 tig0024199:+54603 Msa1415300:CDS
AACAACAACACATTCACGAC+GGG 0.521041 tig0024199:+52854 Msa1415300:CDS
TGTTGCCGTGAGCTTCGTTG+TGG 0.522924 tig0024199:+54452 Msa1415300:CDS
GGAAGAAGAAGCAGCTTCAT+CGG 0.527580 tig0024199:-53008 None:intergenic
TTTGTCTCTCCTGAAAATGT+TGG 0.534278 tig0024199:+58775 Msa1415300:CDS
TCAGATTTCGGACTTGGTGG+GGG 0.534353 tig0024199:-57548 None:intergenic
TCTTTCAATTTCAATACTTG+GGG 0.538360 tig0024199:-55444 None:intergenic
AATGCACGCCACATGACAAA+CGG 0.544435 tig0024199:-55022 None:intergenic
GTCAATTAAAGAAAAGGAGG+AGG 0.545970 tig0024199:+53817 Msa1415300:intron
GAGATAGAAGCCAAGATACA+AGG 0.546758 tig0024199:+53938 Msa1415300:CDS
TTTGCTCAGGAGCTTGGACG+GGG 0.547453 tig0024199:+55645 Msa1415300:CDS
ATAATGATGAGCGCATGTAC+TGG 0.548032 tig0024199:+54275 Msa1415300:CDS
AGCTCTTTGCAAAGAATCCA+GGG 0.549815 tig0024199:+54865 Msa1415300:CDS
TGTCCATTGCTCTCCTGTAG+AGG 0.552261 tig0024199:+56536 Msa1415300:CDS
TTAGATAAAAGGTCTGATCA+TGG 0.552811 tig0024199:-57332 None:intergenic
TCAGATGCACCAAATGCAAA+CGG 0.554343 tig0024199:+53491 Msa1415300:CDS
TAAAAGGTCTGATCATGGAT+GGG 0.555220 tig0024199:-57327 None:intergenic
ATAAAAGGTCTGATCATGGA+TGG 0.557609 tig0024199:-57328 None:intergenic
GTTGAAAATAGTTTGTTGGT+TGG 0.558722 tig0024199:+56414 Msa1415300:CDS
CTCAACCTGATGATGATCGT+TGG 0.558986 tig0024199:-53843 None:intergenic
AGGTTGAGAGCACCTTTGAA+AGG 0.563537 tig0024199:-55555 None:intergenic
ACTCAGAACAAACGCGGGAG+CGG 0.564215 tig0024199:+52919 Msa1415300:CDS
AAGGTATCCTCGATTGAAAG+AGG 0.564928 tig0024199:+53620 Msa1415300:intron
ATCATCATGATGAAGATCTA+CGG 0.566812 tig0024199:-54912 None:intergenic
GCTGGGAGCCGTTTGTCATG+TGG 0.567136 tig0024199:+55014 Msa1415300:CDS
AGCATTCTGTGCAGCTTCTG+TGG 0.567239 tig0024199:-54409 None:intergenic
GAATATACAAATCCTTTCAA+AGG 0.567529 tig0024199:+55543 Msa1415300:CDS
GCACCTTGAGCAAGACAAGA+GGG 0.570458 tig0024199:+56356 Msa1415300:CDS
TGATCCAATCGTATTAAATG+TGG 0.570512 tig0024199:-53896 None:intergenic
AAGTTTACCGCGTCATTGTG+CGG 0.570831 tig0024199:+55494 Msa1415300:CDS
TGATGAAGATCTACGGCCCT+AGG 0.571901 tig0024199:-54905 None:intergenic
ATGTACATCTGGTTTAAGCT+GGG 0.572127 tig0024199:+54997 Msa1415300:CDS
CTAGAATAGACATAATGGAT+AGG 0.573963 tig0024199:-52890 None:intergenic
AGCTTCTGAACAAAAGTCCA+AGG 0.575249 tig0024199:-57495 None:intergenic
TTTCTTTCGAGAAATTGTGT+TGG 0.575306 tig0024199:-53146 None:intergenic
GAACAACAACACCAAACCAC+CGG 0.575999 tig0024199:+52968 Msa1415300:CDS
CCTGAGATTAAATGTGATCA+CGG 0.577057 tig0024199:+54665 Msa1415300:CDS
TCAGGCTCGGCACCAGCATG+AGG 0.577093 tig0024199:-54578 None:intergenic
CATCAGGCAGCTTCACAGCA+AGG 0.577705 tig0024199:-55575 None:intergenic
TTGAAGCCTGTTAGGAACAG+AGG 0.579268 tig0024199:+54815 Msa1415300:CDS
AAGAAGAAGAAACTTGGTGA+TGG 0.579665 tig0024199:+53106 Msa1415300:CDS
GTAATAAACACAATAACGCA+AGG 0.583117 tig0024199:+54837 Msa1415300:CDS
AGTTGTTCCTCTTTCAATCG+AGG 0.584177 tig0024199:-53627 None:intergenic
GTCCATAGAGGACAAATTGG+AGG 0.587047 tig0024199:+58849 Msa1415300:CDS
AGTAAATCACAGGTCCATAG+AGG 0.591019 tig0024199:+58837 Msa1415300:CDS
CGAGGCCCAAATTATCTGCA+TGG 0.591389 tig0024199:+54521 Msa1415300:CDS
CAGAACAAACGCGGGAGCGG+TGG 0.591548 tig0024199:+52922 Msa1415300:CDS
CAAGACAAGAGGGAGCTACA+TGG 0.591607 tig0024199:+56366 Msa1415300:CDS
TCCCAAAGAGCACCATCTAA+GGG 0.591664 tig0024199:-56444 None:intergenic
GCTGCCCACAACGAAGCTCA+CGG 0.592775 tig0024199:-54457 None:intergenic
GAATAGACATAATGGATAGG+AGG 0.597179 tig0024199:-52887 None:intergenic
AACTCAGAGATGCAATCTGG+TGG 0.598438 tig0024199:-54713 None:intergenic
TTGCAGTTACCACAGCAGAC+AGG 0.598583 tig0024199:-53663 None:intergenic
GCAAACTTCCAGTAAATCAC+AGG 0.600882 tig0024199:+58827 Msa1415300:CDS
TTGTGGGCAGCTTCTAGGTG+GGG 0.602777 tig0024199:+54469 Msa1415300:CDS
AAAAGGTCTGATCATGGATG+GGG 0.603357 tig0024199:-57326 None:intergenic
TCTTCAAATAGTTTAGAAGG+AGG 0.604177 tig0024199:-55471 None:intergenic
ACAGTCAATTAAAGAAAAGG+AGG 0.606305 tig0024199:+53814 Msa1415300:intron
GGCCCAAGGATAAACAGAGT+TGG 0.606462 tig0024199:+55421 Msa1415300:CDS
AAGAAACTTGGTGATGGTGA+TGG 0.607702 tig0024199:+53112 Msa1415300:CDS
AGATACAAAGCACCTCATGC+TGG 0.613842 tig0024199:+54566 Msa1415300:CDS
AACGAAGCTCACGGCAACAG+AGG 0.614200 tig0024199:-54448 None:intergenic
AGAATTTAAGCATACTGCAT+CGG 0.616169 tig0024199:-55700 None:intergenic
TTGACTCTTTCGAACAGCAA+CGG 0.617245 tig0024199:-53029 None:intergenic
GAGGCATGTCCTGTCTGCTG+TGG 0.617423 tig0024199:+53654 Msa1415300:CDS
AGCACCTTGAGCAAGACAAG+AGG 0.618569 tig0024199:+56355 Msa1415300:CDS
CCATGTATGAATCTCAGGCT+CGG 0.618686 tig0024199:-54591 None:intergenic
ATGTAAAGCAAAAGAACTTG+CGG 0.619217 tig0024199:+54739 Msa1415300:CDS
CCGAGCCTGAGATTCATACA+TGG 0.619558 tig0024199:+54591 Msa1415300:CDS
TGAAGTTCTAAAGCCAGACA+TGG 0.620406 tig0024199:+55596 Msa1415300:CDS
AATGAAACTTCAAGATGCAG+AGG 0.623550 tig0024199:+54766 Msa1415300:CDS
TTATCTGCATGGTGGAGATG+CGG 0.629116 tig0024199:+54532 Msa1415300:CDS
CTACATGGTGATATTCAGGA+TGG 0.633510 tig0024199:+56381 Msa1415300:CDS
CCATTGCTCTCCTGTAGAGG+AGG 0.634485 tig0024199:+56539 Msa1415300:CDS
CCACCAAGTCCGAAATCTGA+AGG 0.638088 tig0024199:+57551 Msa1415300:CDS
TCAAAGAAATGACAGTGGCA+GGG 0.638575 tig0024199:+53465 Msa1415300:intron
TTGCTGTTCGAAAGAGTCAA+CGG 0.641060 tig0024199:+53032 Msa1415300:CDS
GAAAGAGGAACAACTTGCTG+AGG 0.642111 tig0024199:+53635 Msa1415300:CDS
CACGGCAACAGAGGAGACAA+AGG 0.649807 tig0024199:-54439 None:intergenic
CCTCCTCTACAGGAGAGCAA+TGG 0.652097 tig0024199:-56539 None:intergenic
TCTGCATGGTGGAGATGCGG+AGG 0.653716 tig0024199:+54535 Msa1415300:CDS
TGATTGCTTGGATTGGTGCG+AGG 0.664623 tig0024199:+55096 Msa1415300:CDS
TGAGTGCTTCCGTTTGACAG+AGG 0.665002 tig0024199:+58798 Msa1415300:CDS
TTTCCGGTTACGTTTACCGG+TGG 0.665565 tig0024199:-52984 None:intergenic
GAAGTTCTAAAGCCAGACAT+GGG 0.665837 tig0024199:+55597 Msa1415300:CDS
CAACAACAACACATTCACGA+CGG 0.666770 tig0024199:+52853 Msa1415300:CDS
TACATGCGCTCATCATTATG+GGG 0.667563 tig0024199:-54271 None:intergenic
ACAATTTCTCGAAAGAAACC+CGG 0.668784 tig0024199:+53151 Msa1415300:CDS
GGGTGGCATGCAGATAGTGA+TGG 0.672273 tig0024199:+54623 Msa1415300:CDS
TGGGTACACAAATTGGCCCA+AGG 0.673718 tig0024199:+55407 Msa1415300:CDS
ATAAACTCCGCACAATGACG+CGG 0.675233 tig0024199:-55501 None:intergenic
TAATAAACACAATAACGCAA+GGG 0.675290 tig0024199:+54838 Msa1415300:CDS
GACGGGGTGATTCAGTGACT+AGG 0.676943 tig0024199:+55661 Msa1415300:CDS
CGTATATGCTATGATTGATG+TGG 0.680480 tig0024199:+59278 Msa1415300:CDS
AAGAGACTCAGAACAAACGC+GGG 0.691625 tig0024199:+52914 Msa1415300:CDS
GGCCCAAATTATCTGCATGG+TGG 0.693766 tig0024199:+54524 Msa1415300:CDS
GATGTTGTGACCTTATTGTG+AGG 0.707489 tig0024199:-53190 None:intergenic
AAAGAGACTCAGAACAAACG+CGG 0.708789 tig0024199:+52913 Msa1415300:CDS
CTGCATCGGACATATCACAA+TGG 0.718824 tig0024199:-55686 None:intergenic
CAATGTCAAAGAAATGACAG+TGG 0.718966 tig0024199:+53460 Msa1415300:intron
GCTCTTTGCAAAGAATCCAG+GGG 0.726479 tig0024199:+54866 Msa1415300:CDS
ATACATGGTCAAAATCTGGG+TGG 0.739887 tig0024199:+54606 Msa1415300:CDS
ACAACAACACATTCACGACG+GGG 0.745848 tig0024199:+52855 Msa1415300:CDS
TCAATGGCACTGGAGCAAAG+GGG 0.769506 tig0024199:+54946 Msa1415300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTCCATTTTTTAAT+TGG + tig0024199:54189-54208 Msa1415300:intron 10.0%
!! TAAATTTCATGTAAATTTAT+GGG - tig0024199:56957-56976 None:intergenic 10.0%
!! TTAAATTTCATGTAAATTTA+TGG - tig0024199:56958-56977 None:intergenic 10.0%
!! AAATTATGTATGTGATTAAT+AGG - tig0024199:53264-53283 None:intergenic 15.0%
!! TAAATTAGATTACATTACAT+TGG - tig0024199:53584-53603 None:intergenic 15.0%
!! TATTTGAGTATCATATTAAA+AGG + tig0024199:55791-55810 Msa1415300:intron 15.0%
!! ATTTGAGTATCATATTAAAA+GGG + tig0024199:55792-55811 Msa1415300:intron 15.0%
!!! TCATTATTTAAGGTATTTTT+TGG + tig0024199:56013-56032 Msa1415300:intron 15.0%
!! AAATTTCATGTAAATTTATG+GGG - tig0024199:56956-56975 None:intergenic 15.0%
!! TTATATGAAAGTTAATTAAG+TGG + tig0024199:58100-58119 Msa1415300:intron 15.0%
!! TCAAATATTTAACTAATGTT+TGG + tig0024199:59116-59135 Msa1415300:intron 15.0%
!! ATTATTATTATTATGCACTG+TGG + tig0024199:53227-53246 Msa1415300:intron 20.0%
!! AAAAAAAATACCTTGTATCT+TGG - tig0024199:53951-53970 None:intergenic 20.0%
!! AAGAAAATGACATAAATAAG+AGG - tig0024199:53999-54018 None:intergenic 20.0%
!! TATATATAAAATGTGAACCA+TGG - tig0024199:54025-54044 None:intergenic 20.0%
!! GACTTATTTGGTATATAAAT+TGG + tig0024199:54302-54321 Msa1415300:intron 20.0%
!! AAGATAAACTCAAAATCAAA+TGG - tig0024199:54500-54519 None:intergenic 20.0%
!! ATCTTTCAATTTCAATACTT+GGG - tig0024199:55448-55467 None:intergenic 20.0%
!! AATCTTTCAATTTCAATACT+TGG - tig0024199:55449-55468 None:intergenic 20.0%
!!! AAGTATTGAAATTGAAAGAT+TGG + tig0024199:55448-55467 Msa1415300:CDS 20.0%
!! GGATTTGTATATTCTTTAAA+TGG - tig0024199:55537-55556 None:intergenic 20.0%
!! TTTGAGTATCATATTAAAAG+GGG + tig0024199:55793-55812 Msa1415300:intron 20.0%
!!! TACATCATATCTTAAGTTTT+TGG + tig0024199:55888-55907 Msa1415300:intron 20.0%
!! ATTAGTTGCATCATTATTTA+AGG + tig0024199:56003-56022 Msa1415300:intron 20.0%
!!! ATAATTTTCTATCATCTGTT+TGG + tig0024199:56576-56595 Msa1415300:intron 20.0%
!! GCAAAATGTGAAAAATAAAA+GGG - tig0024199:56683-56702 None:intergenic 20.0%
!! AGCAAAATGTGAAAAATAAA+AGG - tig0024199:56684-56703 None:intergenic 20.0%
!! TATTGAAACATATGATATGA+AGG + tig0024199:57106-57125 Msa1415300:intron 20.0%
!! ATTGAAACATATGATATGAA+GGG + tig0024199:57107-57126 Msa1415300:intron 20.0%
!! AAAGATACATAATGAATGAA+CGG - tig0024199:57270-57289 None:intergenic 20.0%
!!! TACTTATGTTGTTTAATTTG+TGG + tig0024199:57405-57424 Msa1415300:intron 20.0%
!!! TTATTATAGAGCACTATAAT+AGG + tig0024199:57984-58003 Msa1415300:intron 20.0%
!! AAAGTTAATTAAGTGGTTAT+TGG + tig0024199:58107-58126 Msa1415300:intron 20.0%
!! AAGTTAATTAAGTGGTTATT+GGG + tig0024199:58108-58127 Msa1415300:intron 20.0%
!! AATATTATTGATCTAACCTT+AGG - tig0024199:58250-58269 None:intergenic 20.0%
!!! TTTTTTTATACATATCAGTG+TGG + tig0024199:58633-58652 Msa1415300:intron 20.0%
!! ATTTGATTCTTCTGTTTATA+TGG + tig0024199:58890-58909 Msa1415300:intron 20.0%
!!! TCATATCAACAGATTATTTT+TGG + tig0024199:59195-59214 Msa1415300:intron 20.0%
!!! TCTTTCTAGAATAGACATAA+TGG - tig0024199:52898-52917 None:intergenic 25.0%
! AAAAAGAAGAAGAAGAAACT+TGG + tig0024199:53100-53119 Msa1415300:CDS 25.0%
! ATTAACTATTCAACAAACAG+TGG + tig0024199:53410-53429 Msa1415300:intron 25.0%
! GTGTATGCTGTATAAAAAAA+TGG + tig0024199:53524-53543 Msa1415300:intron 25.0%
!!! TTATATCGTTTTTGTTGCTA+AGG + tig0024199:53601-53620 Msa1415300:intron 25.0%
! ATATATAATGTAGATAGCAG+AGG - tig0024199:53754-53773 None:intergenic 25.0%
! ACTACAGTCAATTAAAGAAA+AGG + tig0024199:53811-53830 Msa1415300:intron 25.0%
!!! TATGTCATTTTCTTTTTCCA+TGG + tig0024199:54005-54024 Msa1415300:intron 25.0%
!! TTGTATTTTATCTCATGTGT+CGG + tig0024199:54134-54153 Msa1415300:intron 25.0%
! AACTAAAAACTAATCGATCA+CGG - tig0024199:54165-54184 None:intergenic 25.0%
!!! TCCATTTTTTAATTGGATCT+TGG + tig0024199:54196-54215 Msa1415300:intron 25.0%
!!! CCATTTTTTAATTGGATCTT+GGG + tig0024199:54197-54216 Msa1415300:intron 25.0%
! TAATAAACACAATAACGCAA+GGG + tig0024199:54838-54857 Msa1415300:CDS 25.0%
!!! ATGATTTAGGACATTTTCAA+TGG + tig0024199:54930-54949 Msa1415300:CDS 25.0%
! TCTTTCAATTTCAATACTTG+GGG - tig0024199:55447-55466 None:intergenic 25.0%
! CTTTCTTCAAATAGTTTAGA+AGG - tig0024199:55477-55496 None:intergenic 25.0%
! TGTATATTCTTTAAATGGCA+AGG - tig0024199:55532-55551 None:intergenic 25.0%
! GAATATACAAATCCTTTCAA+AGG + tig0024199:55543-55562 Msa1415300:CDS 25.0%
!! CCATAAGCAATATATGTTTT+TGG - tig0024199:55624-55643 None:intergenic 25.0%
! CCAAAAACATATATTGCTTA+TGG + tig0024199:55621-55640 Msa1415300:CDS 25.0%
! ATTATATATGCTCTTTACCT+TGG + tig0024199:55941-55960 Msa1415300:intron 25.0%
! TTTCAATTACCAAAATACCA+AGG - tig0024199:55961-55980 None:intergenic 25.0%
!! TGAAATATGAAAGATGGTTT+TGG + tig0024199:56039-56058 Msa1415300:intron 25.0%
! AAGCACAAACAAATAATTAG+CGG - tig0024199:56113-56132 None:intergenic 25.0%
!! CAACAAACTATTTTCAACAT+TGG - tig0024199:56412-56431 None:intergenic 25.0%
!! CAATGTTGAAAATAGTTTGT+TGG + tig0024199:56410-56429 Msa1415300:CDS 25.0%
! TAAAGCATAAGCTAAGAATT+AGG - tig0024199:56757-56776 None:intergenic 25.0%
!!! TGAGTAGTTAGTTTTGAATA+CGG + tig0024199:57052-57071 Msa1415300:intron 25.0%
! TTTCAATTTCAAAGTTCACT+TGG + tig0024199:57199-57218 Msa1415300:intron 25.0%
! GTGTTGAATTGTTAACAAAA+TGG - tig0024199:57453-57472 None:intergenic 25.0%
!!! GTGGATTTGTTTTATAATGA+AGG + tig0024199:57591-57610 Msa1415300:intron 25.0%
!!! ATGGAAGTTATTTTTTACCT+AGG - tig0024199:57949-57968 None:intergenic 25.0%
!! ATAAGAAGTATAACAGAACA+TGG - tig0024199:57968-57987 None:intergenic 25.0%
! TTATTATTATCTGTGTGTGT+CGG + tig0024199:58044-58063 Msa1415300:intron 25.0%
! AATAGGAATATGATAGAAAC+TGG - tig0024199:58308-58327 None:intergenic 25.0%
! TCCTATTTAAACATTCCTAA+TGG + tig0024199:58321-58340 Msa1415300:intron 25.0%
! CCTATTTAAACATTCCTAAT+GGG + tig0024199:58322-58341 Msa1415300:intron 25.0%
! CTATTTAAACATTCCTAATG+GGG + tig0024199:58323-58342 Msa1415300:intron 25.0%
! TATTTAAACATTCCTAATGG+GGG + tig0024199:58324-58343 Msa1415300:intron 25.0%
!! GCTAATTTTGTGATTTGATT+AGG - tig0024199:58401-58420 None:intergenic 25.0%
! TGATATCTTAGTATTTAGCT+TGG + tig0024199:58533-58552 Msa1415300:intron 25.0%
! ATTTCAACTAACTATGTTAC+TGG + tig0024199:59158-59177 Msa1415300:intron 25.0%
! TTTCAACTAACTATGTTACT+GGG + tig0024199:59159-59178 Msa1415300:intron 25.0%
!! CTAGAATAGACATAATGGAT+AGG - tig0024199:52893-52912 None:intergenic 30.0%
TTTCTTTCGAGAAATTGTGT+TGG - tig0024199:53149-53168 None:intergenic 30.0%
TTCCATGTAATTGTATGTGT+TGG + tig0024199:53332-53351 Msa1415300:intron 30.0%
AATTAGTCACTCATCAGATT+AGG - tig0024199:53393-53412 None:intergenic 30.0%
! TTGACATTGATGACACATTA+AGG - tig0024199:53449-53468 None:intergenic 30.0%
! ATATCTTTTCCGTTTGCATT+TGG - tig0024199:53503-53522 None:intergenic 30.0%
ACAGTCAATTAAAGAAAAGG+AGG + tig0024199:53814-53833 Msa1415300:intron 30.0%
!! AAGAGCTTTGAGTATATACT+TGG - tig0024199:53873-53892 None:intergenic 30.0%
TCTTCCACATTTAATACGAT+TGG + tig0024199:53892-53911 Msa1415300:CDS 30.0%
TGATCCAATCGTATTAAATG+TGG - tig0024199:53899-53918 None:intergenic 30.0%
AAGTTATCGAGAAGAAAGAA+AGG - tig0024199:54048-54067 None:intergenic 30.0%
CCCAAGATCCAATTAAAAAA+TGG - tig0024199:54200-54219 None:intergenic 30.0%
AGTCATTAACAATGTAGCAT+TGG - tig0024199:54345-54364 None:intergenic 30.0%
ATTCATACATGGTCAAAATC+TGG + tig0024199:54602-54621 Msa1415300:CDS 30.0%
TTCATACATGGTCAAAATCT+GGG + tig0024199:54603-54622 Msa1415300:CDS 30.0%
! TCACATTTAATCTCAGGTTT+TGG - tig0024199:54662-54681 None:intergenic 30.0%
ATGTAAAGCAAAAGAACTTG+CGG + tig0024199:54739-54758 Msa1415300:CDS 30.0%
GTAATAAACACAATAACGCA+AGG + tig0024199:54837-54856 Msa1415300:CDS 30.0%
ATCATCATGATGAAGATCTA+CGG - tig0024199:54915-54934 None:intergenic 30.0%
GATCTTCATCATGATGATTT+AGG + tig0024199:54917-54936 Msa1415300:CDS 30.0%
AATGTACTTGAATGTACATC+TGG + tig0024199:54986-55005 Msa1415300:CDS 30.0%
!! AAACAAGAACAAGTCACTTT+TGG + tig0024199:55060-55079 Msa1415300:CDS 30.0%
AAAGAAAATGAACACAACTG+GGG - tig0024199:55271-55290 None:intergenic 30.0%
GAAAGAAAATGAACACAACT+GGG - tig0024199:55272-55291 None:intergenic 30.0%
TGAAAGAAAATGAACACAAC+TGG - tig0024199:55273-55292 None:intergenic 30.0%
AGAAGTTACAAGCAACTTAT+AGG - tig0024199:55327-55346 None:intergenic 30.0%
TCTTCAAATAGTTTAGAAGG+AGG - tig0024199:55474-55493 None:intergenic 30.0%
AGAATTTAAGCATACTGCAT+CGG - tig0024199:55703-55722 None:intergenic 30.0%
! CTTAAATTCTGAGTTTTTCC+TGG + tig0024199:55713-55732 Msa1415300:intron 30.0%
! TTAAAAGGGGCATAATTTGT+AGG + tig0024199:55806-55825 Msa1415300:intron 30.0%
TGGACTTGAAATATGAAAGA+TGG + tig0024199:56033-56052 Msa1415300:intron 30.0%
! ACTTTTGTCTGTGCTTTATA+TGG + tig0024199:56163-56182 Msa1415300:intron 30.0%
CAGTTCTTTACTCTATTATG+AGG + tig0024199:56201-56220 Msa1415300:intron 30.0%
!! GTTGAAAATAGTTTGTTGGT+TGG + tig0024199:56414-56433 Msa1415300:CDS 30.0%
!! AAAATAGTTTGTTGGTTGGT+GGG + tig0024199:56418-56437 Msa1415300:CDS 30.0%
AATAATGACTCCAGTTAACA+GGG - tig0024199:56607-56626 None:intergenic 30.0%
TGTCAAATTTATCATGTCCA+TGG - tig0024199:56708-56727 None:intergenic 30.0%
GCTAAGAATTAGGTCAAATA+GGG - tig0024199:56747-56766 None:intergenic 30.0%
AGCTAAGAATTAGGTCAAAT+AGG - tig0024199:56748-56767 None:intergenic 30.0%
ATATGAAGGGAAATGCATTA+TGG + tig0024199:57120-57139 Msa1415300:intron 30.0%
TGAAAGAACATCTACTGAAT+CGG - tig0024199:57171-57190 None:intergenic 30.0%
! TTTTTGAATGACATCTCCTT+TGG + tig0024199:57287-57306 Msa1415300:intron 30.0%
TGAATAACCTATAATGCCAA+AGG - tig0024199:57306-57325 None:intergenic 30.0%
TTAGATAAAAGGTCTGATCA+TGG - tig0024199:57335-57354 None:intergenic 30.0%
! CAAGTTTTACCTTCAGATTT+CGG - tig0024199:57563-57582 None:intergenic 30.0%
TTCTCAAACTTTCAAGAACT+TGG - tig0024199:57782-57801 None:intergenic 30.0%
AATACCAGTATACAACTACT+AGG - tig0024199:57808-57827 None:intergenic 30.0%
AAGACTAAATGCTAATTCCT+AGG + tig0024199:57901-57920 Msa1415300:intron 30.0%
GTTGTAATAATGTTCTACCT+AGG - tig0024199:57921-57940 None:intergenic 30.0%
GGTAGAACATTATTACAACA+AGG + tig0024199:57922-57941 Msa1415300:intron 30.0%
CCCATTAGGAATGTTTAAAT+AGG - tig0024199:58325-58344 None:intergenic 30.0%
! ATGGCTTGAAGTATTTATGA+GGG - tig0024199:58443-58462 None:intergenic 30.0%
! TATGGCTTGAAGTATTTATG+AGG - tig0024199:58444-58463 None:intergenic 30.0%
GCTAAATACTAAGATATCAG+AGG - tig0024199:58532-58551 None:intergenic 30.0%
TATTAACTTCAGTGACTCAT+TGG - tig0024199:58571-58590 None:intergenic 30.0%
GGTAATCTGTAAGAAATTGT+AGG - tig0024199:58668-58687 None:intergenic 30.0%
CACTTTAATGTTCTTGCTAA+TGG + tig0024199:58708-58727 Msa1415300:intron 30.0%
GAATCAAATCCATAATAGTC+TGG - tig0024199:58879-58898 None:intergenic 30.0%
! CTTTCAGTTACACCTATTTT+TGG + tig0024199:58915-58934 Msa1415300:intron 30.0%
AACCAACAAATGTTCAGATT+TGG - tig0024199:58961-58980 None:intergenic 30.0%
ACTCTTTACTAGATTCTAGA+TGG - tig0024199:59034-59053 None:intergenic 30.0%
! GTAGCTTTTATGTAAAGACA+AGG + tig0024199:59092-59111 Msa1415300:intron 30.0%
AATCTGTTGATATGACATGA+TGG - tig0024199:59190-59209 None:intergenic 30.0%
TTACAAAAGAAGCAGCAATA+AGG - tig0024199:59241-59260 None:intergenic 30.0%
!! GAATAGACATAATGGATAGG+AGG - tig0024199:52890-52909 None:intergenic 35.0%
GATAAGAAGAACAGCAGTAA+AGG + tig0024199:53054-53073 Msa1415300:CDS 35.0%
TTTCTTCTTGTCTAGCAAGA+CGG - tig0024199:53083-53102 None:intergenic 35.0%
! AAGAAGAAGAAACTTGGTGA+TGG + tig0024199:53106-53125 Msa1415300:CDS 35.0%
ACAATTTCTCGAAAGAAACC+CGG + tig0024199:53151-53170 Msa1415300:CDS 35.0%
! AGGAGTCTGTTTTCTTTTTC+CGG - tig0024199:53173-53192 None:intergenic 35.0%
AAAACAGACTCCTCACAATA+AGG + tig0024199:53180-53199 Msa1415300:CDS 35.0%
CACCAACACATACAATTACA+TGG - tig0024199:53337-53356 None:intergenic 35.0%
! GTAATTGTATGTGTTGGTGT+CGG + tig0024199:53338-53357 Msa1415300:intron 35.0%
CAATGTCAAAGAAATGACAG+TGG + tig0024199:53460-53479 Msa1415300:intron 35.0%
GTCAATTAAAGAAAAGGAGG+AGG + tig0024199:53817-53836 Msa1415300:intron 35.0%
ACGATTGGATCAAGATCAAA+TGG + tig0024199:53907-53926 Msa1415300:CDS 35.0%
AGACAAAAAAGCAAGAAGAG+AGG - tig0024199:53974-53993 None:intergenic 35.0%
CAGGAAAAATAGTGTAAAGC+AGG - tig0024199:54087-54106 None:intergenic 35.0%
! CATAAACAAAAAGCACATGC+AGG - tig0024199:54106-54125 None:intergenic 35.0%
!!! GATTTTGAGTTTATCTTCCG+AGG + tig0024199:54503-54522 Msa1415300:CDS 35.0%
TTTGACCATGTATGAATCTC+AGG - tig0024199:54599-54618 None:intergenic 35.0%
!!! TTAATCTCAGGTTTTGGACA+GGG - tig0024199:54656-54675 None:intergenic 35.0%
!!! TTTAATCTCAGGTTTTGGAC+AGG - tig0024199:54657-54676 None:intergenic 35.0%
CCTGAGATTAAATGTGATCA+CGG + tig0024199:54665-54684 Msa1415300:CDS 35.0%
! GAAATACGCTTTTCAGTTCA+AGG - tig0024199:54694-54713 None:intergenic 35.0%
AATGAAACTTCAAGATGCAG+AGG + tig0024199:54766-54785 Msa1415300:CDS 35.0%
TTATTACCTCTGTTCCTAAC+AGG - tig0024199:54824-54843 None:intergenic 35.0%
! CAACTTTTTGTACTGTCCTA+GGG + tig0024199:54889-54908 Msa1415300:CDS 35.0%
AGTACATTGCTGACAATTAC+AGG - tig0024199:54974-54993 None:intergenic 35.0%
! AATGTACATCTGGTTTAAGC+TGG + tig0024199:54996-55015 Msa1415300:CDS 35.0%
! ATGTACATCTGGTTTAAGCT+GGG + tig0024199:54997-55016 Msa1415300:CDS 35.0%
!!! CAAGTCACTTTTGGATGTTA+AGG + tig0024199:55069-55088 Msa1415300:CDS 35.0%
ACCAACAGAAAAACAGAAAG+CGG - tig0024199:55220-55239 None:intergenic 35.0%
AATGTGCACCAATTCTTTAC+TGG + tig0024199:55387-55406 Msa1415300:CDS 35.0%
ATGTGCACCAATTCTTTACT+GGG + tig0024199:55388-55407 Msa1415300:CDS 35.0%
TTGTGTACCCAGTAAAGAAT+TGG - tig0024199:55398-55417 None:intergenic 35.0%
TCTTTACTGGGTACACAAAT+TGG + tig0024199:55400-55419 Msa1415300:CDS 35.0%
! TATTGCTTATGGATTTGCTC+AGG + tig0024199:55632-55651 Msa1415300:CDS 35.0%
! CATTCTAGAAAAAACAGTCC+AGG - tig0024199:55734-55753 None:intergenic 35.0%
ACTATCAGCTCTTAATGCAA+TGG - tig0024199:55854-55873 None:intergenic 35.0%
! TGCTCTTTACCTTGGTATTT+TGG + tig0024199:55949-55968 Msa1415300:intron 35.0%
TCATATTGCTGAAGCAAAAC+TGG + tig0024199:56293-56312 Msa1415300:CDS 35.0%
!! GAAAATAGTTTGTTGGTTGG+TGG + tig0024199:56417-56436 Msa1415300:CDS 35.0%
!! AAATAGTTTGTTGGTTGGTG+GGG + tig0024199:56419-56438 Msa1415300:CDS 35.0%
!!! GTGCTCTTTGGGATATTTTT+CGG + tig0024199:56454-56473 Msa1415300:CDS 35.0%
ATAATGACTCCAGTTAACAG+GGG - tig0024199:56606-56625 None:intergenic 35.0%
CAATAATGACTCCAGTTAAC+AGG - tig0024199:56608-56627 None:intergenic 35.0%
TTCACAGCAGCAAAACTAAT+CGG - tig0024199:56645-56664 None:intergenic 35.0%
! TTTTTCACATTTTGCTGCCA+TGG + tig0024199:56688-56707 Msa1415300:intron 35.0%
GCTAAGAGACTAAACTATGA+AGG - tig0024199:56839-56858 None:intergenic 35.0%
GCTAGGTAAGACTTAACAAT+GGG - tig0024199:56861-56880 None:intergenic 35.0%
AGCTAGGTAAGACTTAACAA+TGG - tig0024199:56862-56881 None:intergenic 35.0%
!! TAAGTCTTACCTAGCTTTGA+AGG + tig0024199:56866-56885 Msa1415300:intron 35.0%
TAAGTTGTAACTACGACAGA+CGG - tig0024199:56908-56927 None:intergenic 35.0%
ATGAAATTTACATGCCACGA+AGG + tig0024199:57003-57022 Msa1415300:intron 35.0%
ACAAAATTCCGTACTCATGA+TGG - tig0024199:57079-57098 None:intergenic 35.0%
TAAAAGGTCTGATCATGGAT+GGG - tig0024199:57330-57349 None:intergenic 35.0%
ATAAAAGGTCTGATCATGGA+TGG - tig0024199:57331-57350 None:intergenic 35.0%
! CAGACCTTTTATCTAACCAT+CGG + tig0024199:57339-57358 Msa1415300:CDS 35.0%
! AGACCTTTTATCTAACCATC+GGG + tig0024199:57340-57359 Msa1415300:CDS 35.0%
GCATAAGAAAAAGCTTAAGG+AGG + tig0024199:57362-57381 Msa1415300:CDS 35.0%
AAAAAGCTTAAGGAGGAGTA+TGG + tig0024199:57369-57388 Msa1415300:CDS 35.0%
TTTGTGGAGTGTAGATCAAT+AGG + tig0024199:57421-57440 Msa1415300:intron 35.0%
!! TTCAACACTGACTTGTATGT+AGG + tig0024199:57465-57484 Msa1415300:intron 35.0%
TCTACACTTCTTAGCAAACA+AGG - tig0024199:57627-57646 None:intergenic 35.0%
ATGTCCTAGTAGTTGTATAC+TGG + tig0024199:57801-57820 Msa1415300:intron 35.0%
TATTTAGCACTAATGCGACA+TGG - tig0024199:57842-57861 None:intergenic 35.0%
CATTATTACAACAAGGTCCT+AGG + tig0024199:57929-57948 Msa1415300:intron 35.0%
GTTACAAGAAAAGACAGAAC+AGG - tig0024199:58182-58201 None:intergenic 35.0%
TATATGAATCCCTTCTCCTA+AGG + tig0024199:58231-58250 Msa1415300:intron 35.0%
TTGATCTAACCTTAGGAGAA+GGG - tig0024199:58243-58262 None:intergenic 35.0%
ATTGATCTAACCTTAGGAGA+AGG - tig0024199:58244-58263 None:intergenic 35.0%
ATCTAGACGTCTAGATGATA+TGG - tig0024199:58462-58481 None:intergenic 35.0%
GAGCTAGTGAGTAATTGATT+GGG - tig0024199:58689-58708 None:intergenic 35.0%
TGAGCTAGTGAGTAATTGAT+TGG - tig0024199:58690-58709 None:intergenic 35.0%
TTTGTCTCTCCTGAAAATGT+TGG + tig0024199:58775-58794 Msa1415300:CDS 35.0%
TGTGATTTACTGGAAGTTTG+CGG - tig0024199:58828-58847 None:intergenic 35.0%
AACATGACGATGCCAAAAAT+AGG - tig0024199:58930-58949 None:intergenic 35.0%
GTCCAAATCTGAACATTTGT+TGG + tig0024199:58956-58975 Msa1415300:intron 35.0%
!! ATTGCTGCTTCTTTTGTAAC+AGG + tig0024199:59242-59261 Msa1415300:intron 35.0%
CGTATATGCTATGATTGATG+TGG + tig0024199:59278-59297 Msa1415300:CDS 35.0%
GATTGATGTGGTCAAAAAGT+TGG + tig0024199:59290-59309 Msa1415300:CDS 35.0%
TCAAAAAGTTGGAGAAAGCA+AGG + tig0024199:59301-59320 Msa1415300:CDS 35.0%
CAACAACAACACATTCACGA+CGG + tig0024199:52853-52872 Msa1415300:CDS 40.0%
AACAACAACACATTCACGAC+GGG + tig0024199:52854-52873 Msa1415300:CDS 40.0%
AAAGAGACTCAGAACAAACG+CGG + tig0024199:52913-52932 Msa1415300:CDS 40.0%
TTGACTCTTTCGAACAGCAA+CGG - tig0024199:53032-53051 None:intergenic 40.0%
! TTGCTGTTCGAAAGAGTCAA+CGG + tig0024199:53032-53051 Msa1415300:CDS 40.0%
TTCTTCTTGTCTAGCAAGAC+GGG - tig0024199:53082-53101 None:intergenic 40.0%
!! AAGAAACTTGGTGATGGTGA+TGG + tig0024199:53112-53131 Msa1415300:CDS 40.0%
! GGAGTCTGTTTTCTTTTTCC+GGG - tig0024199:53172-53191 None:intergenic 40.0%
GATGTTGTGACCTTATTGTG+AGG - tig0024199:53193-53212 None:intergenic 40.0%
!! CAACAAACAGTGGATTGAAG+AGG + tig0024199:53420-53439 Msa1415300:intron 40.0%
TCAAAGAAATGACAGTGGCA+GGG + tig0024199:53465-53484 Msa1415300:intron 40.0%
TCAGATGCACCAAATGCAAA+CGG + tig0024199:53491-53510 Msa1415300:CDS 40.0%
! AAGGTATCCTCGATTGAAAG+AGG + tig0024199:53620-53639 Msa1415300:intron 40.0%
AGTTGTTCCTCTTTCAATCG+AGG - tig0024199:53630-53649 None:intergenic 40.0%
! GCAAAGCTTGTTTGAAGTCA+CGG + tig0024199:53688-53707 Msa1415300:CDS 40.0%
TCAAGATCAAATGGCTGAGA+AGG + tig0024199:53916-53935 Msa1415300:CDS 40.0%
GAGATAGAAGCCAAGATACA+AGG + tig0024199:53938-53957 Msa1415300:CDS 40.0%
TACATGCGCTCATCATTATG+GGG - tig0024199:54274-54293 None:intergenic 40.0%
GTACATGCGCTCATCATTAT+GGG - tig0024199:54275-54294 None:intergenic 40.0%
AGTACATGCGCTCATCATTA+TGG - tig0024199:54276-54295 None:intergenic 40.0%
ATAATGATGAGCGCATGTAC+TGG + tig0024199:54275-54294 Msa1415300:CDS 40.0%
! TGTACTGGTAGGGACTTATT+TGG + tig0024199:54290-54309 Msa1415300:intron 40.0%
CTCCACCATGCAGATAATTT+GGG - tig0024199:54529-54548 None:intergenic 40.0%
TCTCCACCATGCAGATAATT+TGG - tig0024199:54530-54549 None:intergenic 40.0%
ATACATGGTCAAAATCTGGG+TGG + tig0024199:54606-54625 Msa1415300:CDS 40.0%
CCGTGATCACATTTAATCTC+AGG - tig0024199:54668-54687 None:intergenic 40.0%
ACTAACTCAGAGATGCAATC+TGG - tig0024199:54719-54738 None:intergenic 40.0%
AGCTCTTTGCAAAGAATCCA+GGG + tig0024199:54865-54884 Msa1415300:CDS 40.0%
! GCAACTTTTTGTACTGTCCT+AGG + tig0024199:54888-54907 Msa1415300:CDS 40.0%
! TAGGACATTTTCAATGGCAC+TGG + tig0024199:54936-54955 Msa1415300:CDS 40.0%
! TGTTAAGGCACTTGATTGCT+TGG + tig0024199:55084-55103 Msa1415300:CDS 40.0%
TGATCTTTGAGCTTCTCATG+CGG + tig0024199:55164-55183 Msa1415300:intron 40.0%
AACAGAAAAACAGAAAGCGG+GGG - tig0024199:55217-55236 None:intergenic 40.0%
CAACAGAAAAACAGAAAGCG+GGG - tig0024199:55218-55237 None:intergenic 40.0%
CCAACAGAAAAACAGAAAGC+GGG - tig0024199:55219-55238 None:intergenic 40.0%
!! TCTGGCTTTAGAACTTCATC+AGG - tig0024199:55594-55613 None:intergenic 40.0%
!! TGAAGTTCTAAAGCCAGACA+TGG + tig0024199:55596-55615 Msa1415300:CDS 40.0%
!! GAAGTTCTAAAGCCAGACAT+GGG + tig0024199:55597-55616 Msa1415300:CDS 40.0%
!!! TATGTTTTTGGTCCCATGTC+TGG - tig0024199:55612-55631 None:intergenic 40.0%
GATGTATACGATGCCTTTGT+AGG + tig0024199:55828-55847 Msa1415300:intron 40.0%
CTTAATGCAATGGCCTACAA+AGG - tig0024199:55844-55863 None:intergenic 40.0%
CTACATGGTGATATTCAGGA+TGG + tig0024199:56381-56400 Msa1415300:CDS 40.0%
!! AATAGTTTGTTGGTTGGTGG+GGG + tig0024199:56420-56439 Msa1415300:CDS 40.0%
!! TTGGGATATTTTTCGGAGAG+AGG + tig0024199:56461-56480 Msa1415300:CDS 40.0%
TTCAGATATTCCTGCAATGC+AGG - tig0024199:56492-56511 None:intergenic 40.0%
!! AGAAGCATTTCAGAGAGTTC+AGG + tig0024199:56511-56530 Msa1415300:CDS 40.0%
ACTAACTTTACCTCCTCTAC+AGG - tig0024199:56552-56571 None:intergenic 40.0%
TAATGACTCCAGTTAACAGG+GGG - tig0024199:56605-56624 None:intergenic 40.0%
ATTACCAACTTGATCCTTCG+TGG - tig0024199:57020-57039 None:intergenic 40.0%
AATACGGACCATCATGAGTA+CGG + tig0024199:57068-57087 Msa1415300:intron 40.0%
GATGTAATTTCCAGTCCCTT+AGG + tig0024199:57142-57161 Msa1415300:intron 40.0%
AAAGTTCACTTGGCAGTAGA+CGG + tig0024199:57209-57228 Msa1415300:intron 40.0%
GACATCTCCTTTGGCATTAT+AGG + tig0024199:57296-57315 Msa1415300:intron 40.0%
AAAAGGTCTGATCATGGATG+GGG - tig0024199:57329-57348 None:intergenic 40.0%
ATGCCCGATGGTTAGATAAA+AGG - tig0024199:57346-57365 None:intergenic 40.0%
!! AAGCTTTTTCTTATGCCCGA+TGG - tig0024199:57358-57377 None:intergenic 40.0%
CGGGCATAAGAAAAAGCTTA+AGG + tig0024199:57359-57378 Msa1415300:CDS 40.0%
!! TGTATGTAGGTATTGAGCCT+TGG + tig0024199:57478-57497 Msa1415300:intron 40.0%
AGCTTCTGAACAAAAGTCCA+AGG - tig0024199:57498-57517 None:intergenic 40.0%
! TGGACTTTTGTTCAGAAGCT+TGG + tig0024199:57498-57517 Msa1415300:CDS 40.0%
TTACCTTCAGATTTCGGACT+TGG - tig0024199:57557-57576 None:intergenic 40.0%
GAAGGTAAAACTTGCGTACA+TGG + tig0024199:57569-57588 Msa1415300:intron 40.0%
!! TGTGTGTCGGTTATGTAAAG+CGG + tig0024199:58057-58076 Msa1415300:intron 40.0%
GTTATTGGGACTCAAGATCA+TGG + tig0024199:58122-58141 Msa1415300:intron 40.0%
TTAAACATTCCTAATGGGGG+AGG + tig0024199:58327-58346 Msa1415300:intron 40.0%
TAAACATTCCTAATGGGGGA+GGG + tig0024199:58328-58347 Msa1415300:intron 40.0%
! GATTTGGTTCCTATGGATGT+GGG + tig0024199:58357-58376 Msa1415300:intron 40.0%
AATTCTATGCCCACATCCAT+AGG - tig0024199:58369-58388 None:intergenic 40.0%
TCTAGATCGTTACTCGAGTA+GGG + tig0024199:58475-58494 Msa1415300:intron 40.0%
GAGGCTATGCTTTATCCATT+TGG - tig0024199:58513-58532 None:intergenic 40.0%
!! CATTTTTCAGTCATGCACCA+AGG + tig0024199:58741-58760 Msa1415300:intron 40.0%
GACAAAATCAAGTGCAACCT+TGG - tig0024199:58761-58780 None:intergenic 40.0%
! AAGCACTCACCAACATTTTC+AGG - tig0024199:58787-58806 None:intergenic 40.0%
GCAAACTTCCAGTAAATCAC+AGG + tig0024199:58827-58846 Msa1415300:CDS 40.0%
TCTATGGACCTGTGATTTAC+TGG - tig0024199:58838-58857 None:intergenic 40.0%
AGTAAATCACAGGTCCATAG+AGG + tig0024199:58837-58856 Msa1415300:CDS 40.0%
TACCTCCAATTTGTCCTCTA+TGG - tig0024199:58854-58873 None:intergenic 40.0%
ACAACAACACATTCACGACG+GGG + tig0024199:52855-52874 Msa1415300:CDS 45.0%
AAGAGACTCAGAACAAACGC+GGG + tig0024199:52914-52933 Msa1415300:CDS 45.0%
GAACAACAACACCAAACCAC+CGG + tig0024199:52968-52987 Msa1415300:CDS 45.0%
AAACCACCGGTAAACGTAAC+CGG + tig0024199:52981-53000 Msa1415300:CDS 45.0%
! GGTTTTCCGGTTACGTTTAC+CGG - tig0024199:52990-53009 None:intergenic 45.0%
!!! AAGCAGCTTCATCGGTTTTC+CGG - tig0024199:53003-53022 None:intergenic 45.0%
GGAAGAAGAAGCAGCTTCAT+CGG - tig0024199:53011-53030 None:intergenic 45.0%
GTCAAAGAAATGACAGTGGC+AGG + tig0024199:53464-53483 Msa1415300:intron 45.0%
!! GAAAGAGGAACAACTTGCTG+AGG + tig0024199:53635-53654 Msa1415300:CDS 45.0%
GGAAACCAACGATCATCATC+AGG + tig0024199:53838-53857 Msa1415300:CDS 45.0%
! CTCAACCTGATGATGATCGT+TGG - tig0024199:53846-53865 None:intergenic 45.0%
CATGCAGATAATTTGGGCCT+CGG - tig0024199:54523-54542 None:intergenic 45.0%
! TTATCTGCATGGTGGAGATG+CGG + tig0024199:54532-54551 Msa1415300:CDS 45.0%
! AGCATGAGGTGCTTTGTATC+TGG - tig0024199:54567-54586 None:intergenic 45.0%
! AGATACAAAGCACCTCATGC+TGG + tig0024199:54566-54585 Msa1415300:CDS 45.0%
CCATGTATGAATCTCAGGCT+CGG - tig0024199:54594-54613 None:intergenic 45.0%
AACTCAGAGATGCAATCTGG+TGG - tig0024199:54716-54735 None:intergenic 45.0%
! GCTCTTGTTTGAAGCCTGTT+AGG + tig0024199:54807-54826 Msa1415300:CDS 45.0%
TTGAAGCCTGTTAGGAACAG+AGG + tig0024199:54815-54834 Msa1415300:CDS 45.0%
CAGCTCTTTGCAAAGAATCC+AGG + tig0024199:54864-54883 Msa1415300:CDS 45.0%
GCTCTTTGCAAAGAATCCAG+GGG + tig0024199:54866-54885 Msa1415300:CDS 45.0%
ACAGTACAAAAAGTTGCCCC+TGG - tig0024199:54885-54904 None:intergenic 45.0%
! TTTCAATGGCACTGGAGCAA+AGG + tig0024199:54944-54963 Msa1415300:CDS 45.0%
! TTCAATGGCACTGGAGCAAA+GGG + tig0024199:54945-54964 Msa1415300:CDS 45.0%
AATGCACGCCACATGACAAA+CGG - tig0024199:55025-55044 None:intergenic 45.0%
AGGCACTTGATTGCTTGGAT+TGG + tig0024199:55089-55108 Msa1415300:CDS 45.0%
!! CCCGCTTTCTGTTTTTCTGT+TGG + tig0024199:55216-55235 Msa1415300:intron 45.0%
GGCCAACTCTGTTTATCCTT+GGG - tig0024199:55426-55445 None:intergenic 45.0%
AAGTTTACCGCGTCATTGTG+CGG + tig0024199:55494-55513 Msa1415300:CDS 45.0%
ATAAACTCCGCACAATGACG+CGG - tig0024199:55504-55523 None:intergenic 45.0%
!! AGGTTGAGAGCACCTTTGAA+AGG - tig0024199:55558-55577 None:intergenic 45.0%
! TATGGATTTGCTCAGGAGCT+TGG + tig0024199:55639-55658 Msa1415300:CDS 45.0%
CTGCATCGGACATATCACAA+TGG - tig0024199:55689-55708 None:intergenic 45.0%
CGGAAAGACAATGCATCTGA+TGG - tig0024199:56093-56112 None:intergenic 45.0%
GGAGCTACATGGTGATATTC+AGG + tig0024199:56377-56396 Msa1415300:CDS 45.0%
TCCCTTAGATGGTGCTCTTT+GGG + tig0024199:56443-56462 Msa1415300:CDS 45.0%
!! TCCCAAAGAGCACCATCTAA+GGG - tig0024199:56447-56466 None:intergenic 45.0%
!! ATCCCAAAGAGCACCATCTA+AGG - tig0024199:56448-56467 None:intergenic 45.0%
GTGCTACAACCTTCAAAGCT+AGG - tig0024199:56878-56897 None:intergenic 45.0%
CTACTGAATCGGTGACCTAA+GGG - tig0024199:57160-57179 None:intergenic 45.0%
TCTACTGAATCGGTGACCTA+AGG - tig0024199:57161-57180 None:intergenic 45.0%
AAGTTCACTTGGCAGTAGAC+GGG + tig0024199:57210-57229 Msa1415300:intron 45.0%
!! TTCAGATTTCGGACTTGGTG+GGG - tig0024199:57552-57571 None:intergenic 45.0%
! CTTCAGATTTCGGACTTGGT+GGG - tig0024199:57553-57572 None:intergenic 45.0%
GGTAAAACTTGCGTACATGG+TGG + tig0024199:57572-57591 Msa1415300:intron 45.0%
!! GTGTGTCGGTTATGTAAAGC+GGG + tig0024199:58058-58077 Msa1415300:intron 45.0%
ACTCAAGATCATGGAGAACC+AGG + tig0024199:58131-58150 Msa1415300:intron 45.0%
TTAACAGAGCTGGGTTATCC+TGG - tig0024199:58152-58171 None:intergenic 45.0%
GGAACACACTTAACAGAGCT+GGG - tig0024199:58161-58180 None:intergenic 45.0%
AGGAACACACTTAACAGAGC+TGG - tig0024199:58162-58181 None:intergenic 45.0%
AAACATTCCTAATGGGGGAG+GGG + tig0024199:58329-58348 Msa1415300:intron 45.0%
! GGTTTGGGATTTGGTTCCTA+TGG + tig0024199:58350-58369 Msa1415300:intron 45.0%
! GGATTTGGTTCCTATGGATG+TGG + tig0024199:58356-58375 Msa1415300:intron 45.0%
GTCTAGATCGTTACTCGAGT+AGG + tig0024199:58474-58493 Msa1415300:intron 45.0%
GGGTGACAATTGTAGCCAAA+TGG + tig0024199:58495-58514 Msa1415300:intron 45.0%
TGCGGAATTCCTCTGTCAAA+CGG - tig0024199:58810-58829 None:intergenic 45.0%
CAGGTCCATAGAGGACAAAT+TGG + tig0024199:58846-58865 Msa1415300:CDS 45.0%
GTCCATAGAGGACAAATTGG+AGG + tig0024199:58849-58868 Msa1415300:CDS 45.0%
! GGAGGTATGCCAGACTATTA+TGG + tig0024199:58867-58886 Msa1415300:intron 45.0%
!!! TTTTTTTTTTTTTTACAATT+AGG + tig0024199:56257-56276 Msa1415300:intron 5.0%
!! AGAAAAAATAAATATAAATA+TGG + tig0024199:57713-57732 Msa1415300:intron 5.0%
GGTTACGTTTACCGGTGGTT+TGG - tig0024199:52982-53001 None:intergenic 50.0%
TTTCCGGTTACGTTTACCGG+TGG - tig0024199:52987-53006 None:intergenic 50.0%
CATTGATGCGTGTCTGACAC+TGG + tig0024199:53362-53381 Msa1415300:intron 50.0%
TTGCAGTTACCACAGCAGAC+AGG - tig0024199:53666-53685 None:intergenic 50.0%
GATCTTGGGATCAACGTTGC+AGG + tig0024199:54211-54230 Msa1415300:intron 50.0%
! TGATGAGCGCATGTACTGGT+AGG + tig0024199:54279-54298 Msa1415300:intron 50.0%
! GATGAGCGCATGTACTGGTA+GGG + tig0024199:54280-54299 Msa1415300:intron 50.0%
AGCATTCTGTGCAGCTTCTG+TGG - tig0024199:54412-54431 None:intergenic 50.0%
CGAGGCCCAAATTATCTGCA+TGG + tig0024199:54521-54540 Msa1415300:CDS 50.0%
GGCCCAAATTATCTGCATGG+TGG + tig0024199:54524-54543 Msa1415300:CDS 50.0%
CCGAGCCTGAGATTCATACA+TGG + tig0024199:54591-54610 Msa1415300:CDS 50.0%
TGATGAAGATCTACGGCCCT+AGG - tig0024199:54908-54927 None:intergenic 50.0%
! TCAATGGCACTGGAGCAAAG+GGG + tig0024199:54946-54965 Msa1415300:CDS 50.0%
!! TGATTGCTTGGATTGGTGCG+AGG + tig0024199:55096-55115 Msa1415300:CDS 50.0%
TGGGTACACAAATTGGCCCA+AGG + tig0024199:55407-55426 Msa1415300:CDS 50.0%
GGCCCAAGGATAAACAGAGT+TGG + tig0024199:55421-55440 Msa1415300:CDS 50.0%
GGGCCAACTCTGTTTATCCT+TGG - tig0024199:55427-55446 None:intergenic 50.0%
! GATTTGCTCAGGAGCTTGGA+CGG + tig0024199:55643-55662 Msa1415300:CDS 50.0%
ATTTGCTCAGGAGCTTGGAC+GGG + tig0024199:55644-55663 Msa1415300:CDS 50.0%
AGCACCTTGAGCAAGACAAG+AGG + tig0024199:56355-56374 Msa1415300:CDS 50.0%
GCACCTTGAGCAAGACAAGA+GGG + tig0024199:56356-56375 Msa1415300:CDS 50.0%
CAAGACAAGAGGGAGCTACA+TGG + tig0024199:56366-56385 Msa1415300:CDS 50.0%
GTCCCTTAGATGGTGCTCTT+TGG + tig0024199:56442-56461 Msa1415300:CDS 50.0%
TGTCCATTGCTCTCCTGTAG+AGG + tig0024199:56536-56555 Msa1415300:CDS 50.0%
TTTGGATGCCCCCTGTTAAC+TGG + tig0024199:56594-56613 Msa1415300:intron 50.0%
CATGCCACGAAGGATCAAGT+TGG + tig0024199:57013-57032 Msa1415300:intron 50.0%
AGTTCACTTGGCAGTAGACG+GGG + tig0024199:57211-57230 Msa1415300:intron 50.0%
!! GACGCTGTTTTCATTCCAGC+TGG + tig0024199:57522-57541 Msa1415300:CDS 50.0%
!! TCAGATTTCGGACTTGGTGG+GGG - tig0024199:57551-57570 None:intergenic 50.0%
CCTTCAGATTTCGGACTTGG+TGG - tig0024199:57554-57573 None:intergenic 50.0%
CCACCAAGTCCGAAATCTGA+AGG + tig0024199:57551-57570 Msa1415300:CDS 50.0%
TGAGTGCTTCCGTTTGACAG+AGG + tig0024199:58798-58817 Msa1415300:CDS 50.0%
ACTCAGAACAAACGCGGGAG+CGG + tig0024199:52919-52938 Msa1415300:CDS 55.0%
CACGGCAACAGAGGAGACAA+AGG - tig0024199:54442-54461 None:intergenic 55.0%
AACGAAGCTCACGGCAACAG+AGG - tig0024199:54451-54470 None:intergenic 55.0%
TGTTGCCGTGAGCTTCGTTG+TGG + tig0024199:54452-54471 Msa1415300:CDS 55.0%
GTTGCCGTGAGCTTCGTTGT+GGG + tig0024199:54453-54472 Msa1415300:CDS 55.0%
CTTCGTTGTGGGCAGCTTCT+AGG + tig0024199:54464-54483 Msa1415300:CDS 55.0%
GTTGTGGGCAGCTTCTAGGT+GGG + tig0024199:54468-54487 Msa1415300:CDS 55.0%
TTGTGGGCAGCTTCTAGGTG+GGG + tig0024199:54469-54488 Msa1415300:CDS 55.0%
GGGTGGCATGCAGATAGTGA+TGG + tig0024199:54623-54642 Msa1415300:CDS 55.0%
ACAGAAAGCGGGGGATGCAA+GGG - tig0024199:55208-55227 None:intergenic 55.0%
AACAGAAAGCGGGGGATGCA+AGG - tig0024199:55209-55228 None:intergenic 55.0%
CATCAGGCAGCTTCACAGCA+AGG - tig0024199:55578-55597 None:intergenic 55.0%
TTTGCTCAGGAGCTTGGACG+GGG + tig0024199:55645-55664 Msa1415300:CDS 55.0%
GACGGGGTGATTCAGTGACT+AGG + tig0024199:55661-55680 Msa1415300:CDS 55.0%
GCTCCCTCTTGTCTTGCTCA+AGG - tig0024199:56362-56381 None:intergenic 55.0%
AGAGGACGTACCTGCATTGC+AGG + tig0024199:56479-56498 Msa1415300:CDS 55.0%
CCTCCTCTACAGGAGAGCAA+TGG - tig0024199:56542-56561 None:intergenic 55.0%
CCATTGCTCTCCTGTAGAGG+AGG + tig0024199:56539-56558 Msa1415300:CDS 55.0%
GAATCGGTGACCTAAGGGAC+TGG - tig0024199:57155-57174 None:intergenic 55.0%
TTCCTAATGGGGGAGGGGTT+TGG + tig0024199:58334-58353 Msa1415300:intron 55.0%
TCCTAATGGGGGAGGGGTTT+GGG + tig0024199:58335-58354 Msa1415300:intron 55.0%
GAGGCATGTCCTGTCTGCTG+TGG + tig0024199:53654-53673 Msa1415300:CDS 60.0%
GCTGCCCACAACGAAGCTCA+CGG - tig0024199:54460-54479 None:intergenic 60.0%
CGTTGTGGGCAGCTTCTAGG+TGG + tig0024199:54467-54486 Msa1415300:CDS 60.0%
! TCTGCATGGTGGAGATGCGG+AGG + tig0024199:54535-54554 Msa1415300:CDS 60.0%
GCTGGGAGCCGTTTGTCATG+TGG + tig0024199:55014-55033 Msa1415300:CDS 60.0%
! GTTGGTGGGGGTCCCTTAGA+TGG + tig0024199:56432-56451 Msa1415300:CDS 60.0%
TCCCAAACCCCTCCCCCATT+AGG - tig0024199:58339-58358 None:intergenic 60.0%
! TGGGGGAGGGGTTTGGGATT+TGG + tig0024199:58341-58360 Msa1415300:intron 60.0%
CAGAACAAACGCGGGAGCGG+TGG + tig0024199:52922-52941 Msa1415300:CDS 65.0%
AACAAACGCGGGAGCGGTGG+CGG + tig0024199:52925-52944 Msa1415300:CDS 65.0%
TCAGGCTCGGCACCAGCATG+AGG - tig0024199:54581-54600 None:intergenic 65.0%
! ACTTGGTGGGGGCAACCAGC+TGG - tig0024199:57540-57559 None:intergenic 65.0%
! AAACGCGGGAGCGGTGGCGG+AGG + tig0024199:52928-52947 Msa1415300:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0024199 gene 52827 59332 52827 ID=Msa1415300;Name=Msa1415300
tig0024199 mRNA 52827 59332 52827 ID=Msa1415300-mRNA-1;Parent=Msa1415300;Name=Msa1415300-mRNA-1;_AED=0.08;_eAED=0.10;_QI=0|0|0|1|1|1|12|0|817
tig0024199 exon 52827 53220 52827 ID=Msa1415300-mRNA-1:exon:22281;Parent=Msa1415300-mRNA-1
tig0024199 exon 53471 53525 53471 ID=Msa1415300-mRNA-1:exon:22282;Parent=Msa1415300-mRNA-1
tig0024199 exon 53623 53722 53623 ID=Msa1415300-mRNA-1:exon:22283;Parent=Msa1415300-mRNA-1
tig0024199 exon 53818 53959 53818 ID=Msa1415300-mRNA-1:exon:22284;Parent=Msa1415300-mRNA-1
tig0024199 exon 54233 54296 54233 ID=Msa1415300-mRNA-1:exon:22285;Parent=Msa1415300-mRNA-1
tig0024199 exon 54379 55117 54379 ID=Msa1415300-mRNA-1:exon:22286;Parent=Msa1415300-mRNA-1
tig0024199 exon 55378 55707 55378 ID=Msa1415300-mRNA-1:exon:22287;Parent=Msa1415300-mRNA-1
tig0024199 exon 56279 56560 56279 ID=Msa1415300-mRNA-1:exon:22288;Parent=Msa1415300-mRNA-1
tig0024199 exon 57318 57390 57318 ID=Msa1415300-mRNA-1:exon:22289;Parent=Msa1415300-mRNA-1
tig0024199 exon 57487 57572 57487 ID=Msa1415300-mRNA-1:exon:22290;Parent=Msa1415300-mRNA-1
tig0024199 exon 58751 58870 58751 ID=Msa1415300-mRNA-1:exon:22291;Parent=Msa1415300-mRNA-1
tig0024199 exon 59264 59332 59264 ID=Msa1415300-mRNA-1:exon:22292;Parent=Msa1415300-mRNA-1
tig0024199 CDS 52827 53220 52827 ID=Msa1415300-mRNA-1:cds;Parent=Msa1415300-mRNA-1
tig0024199 CDS 53471 53525 53471 ID=Msa1415300-mRNA-1:cds;Parent=Msa1415300-mRNA-1
tig0024199 CDS 53623 53722 53623 ID=Msa1415300-mRNA-1:cds;Parent=Msa1415300-mRNA-1
tig0024199 CDS 53818 53959 53818 ID=Msa1415300-mRNA-1:cds;Parent=Msa1415300-mRNA-1
tig0024199 CDS 54233 54296 54233 ID=Msa1415300-mRNA-1:cds;Parent=Msa1415300-mRNA-1
tig0024199 CDS 54379 55117 54379 ID=Msa1415300-mRNA-1:cds;Parent=Msa1415300-mRNA-1
tig0024199 CDS 55378 55707 55378 ID=Msa1415300-mRNA-1:cds;Parent=Msa1415300-mRNA-1
tig0024199 CDS 56279 56560 56279 ID=Msa1415300-mRNA-1:cds;Parent=Msa1415300-mRNA-1
tig0024199 CDS 57318 57390 57318 ID=Msa1415300-mRNA-1:cds;Parent=Msa1415300-mRNA-1
tig0024199 CDS 57487 57572 57487 ID=Msa1415300-mRNA-1:cds;Parent=Msa1415300-mRNA-1
tig0024199 CDS 58751 58870 58751 ID=Msa1415300-mRNA-1:cds;Parent=Msa1415300-mRNA-1
tig0024199 CDS 59264 59332 59264 ID=Msa1415300-mRNA-1:cds;Parent=Msa1415300-mRNA-1
Gene Sequence

>Msa1415300

ATGGCGTTTGCGAGGGAACAAGAAGACAACAACAACACATTCACGACGGGGATTAACAAGCCTCCTATCCATTATGTCTATTCTAGAAAGAGACTCAGAACAAACGCGGGAGCGGTGGCGGAGGAGTTAGCTAAGAACGAAGAACAACAACACCAAACCACCGGTAAACGTAACCGGAAAACCGATGAAGCTGCTTCTTCTTCCGTTGCTGTTCGAAAGAGTCAACGGATAAGAAGAACAGCAGTAAAGGCTCCCGTCTTGCTAGACAAGAAGAAAAAGAAGAAGAAGAAACTTGGTGATGGTGATGGTGCTGAGAAAACCAACACAATTTCTCGAAAGAAACCCGGAAAAAGAAAACAGACTCCTCACAATAAGGTCACAACATCTTCTTCTAAAATGACAGTGGCAGGGTTGTCAGATGCACCAAATGCAAACGGAAAAGATATTGTGTATCCTCGATTGAAAGAGGAACAACTTGCTGAGGCATGTCCTGTCTGCTGTGGTAACTGCAATTGCAAAGCTTGTTTGAAGTCACGGAAACTAATCGATTCAATTAAAGAAAAGGAGGAGGAAACCAACGATCATCATCAGGTTGAGCGCTCCAAGTATATACTCAAAGCTCTTCTTCCACATTTAATACGATTGGATCAAGATCAAATGGCTGAGAAGGAGATAGAAGCCAAGATACAAGGTCTCTCACTCTCTGAGCTAAAAATTAAAAAATCAAATCCCCATAATGATGAGCGCATGTACTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAAGCTGCACAGAATGCTCTTTTGACCTTTGTCTCCTCTGTTGCCGTGAGCTTCGTTGTGGGCAGCTTCTAGGTGGGGCAGATCCATTTGATTTTGAGTTTATCTTCCGAGGCCCAAATTATCTGCATGGTGGAGATGCGGAGGAAGTAACCAGATACAAAGCACCTCATGCTGGTGCCGAGCCTGAGATTCATACATGGTCAAAATCTGGGTGGCATGCAGATAGTGATGGCAATATTCCCTGTCCAAAACCTGAGATTAAATGTGATCACGGTTACCTTGAACTGAAAAGCGTATTTCCACCAGATTGCATCTCTGAGTTAGTATGTAAAGCAAAAGAACTTGCGGATTCAATGAAACTTCAAGATGCAGAGGTGACTCTTGATAATAGCTGCTCTTGTTTGAAGCCTGTTAGGAACAGAGGTAATAAACACAATAACGCAAGGGAAGCAGCTCTTTGCAAAGAATCCAGGGGCAACTTTTTGTACTGTCCTAGGGCCGTAGATCTTCATCATGATGATTTAGGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAGCCGTTTGTCATGTGGCGTGCATTTCGTCAGATAAACAAAAACAAGAACAAGTCACTTTTGGATGTTAAGGCACTTGATTGCTTGGATTGGTGCGAGATAGATATTAATGTGCACCAATTCTTTACTGGGTACACAAATTGGCCCAAGGATAAACAGAGTTGGCCCCAAGTATTGAAATTGAAAGATTGGCCTCCTTCTAAACTATTTGAAGAAAGTTTACCGCGTCATTGTGCGGAGTTTATATCTTCCTTGCCATTTAAAGAATATACAAATCCTTTCAAAGGTGCTCTCAACCTTGCTGTGAAGCTGCCTGATGAAGTTCTAAAGCCAGACATGGGACCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGACGGGGTGATTCAGTGACTAGGCTCCATTGTGATATGTCCGATGCAGTAAATGTGTTGACTCATATTGCTGAAGCAAAACTGGATCGTGTGAGTGTTGACGCAATTAAGAAATTGAAACAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATATTCAGGATGGAGAGACCAATGTTGAAAATAGTTTGTTGGTTGGTGGGGGTCCCTTAGATGGTGCTCTTTGGGATATTTTTCGGAGAGAGGACGTACCTGCATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTCTCCTGTAGAGGAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTAACCATCGGGCATAAGAAAAAGCTTAAGGAGGAGTATGGTATTGAGCCTTGGACTTTTGTTCAGAAGCTTGGAGACGCTGTTTTCATTCCAGCTGGTTGCCCCCACCAAGTCCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCAAACTTCCAGTAAATCACAGGTCCATAGAGGACAAATTGGAGGTGAAGAAAATGATCGTATATGCTATGATTGATGTGGTCAAAAAGTTGGAGAAAGCAAGGAGCCAATGA
Protein sequence

>Msa1415300

MAFAREQEDNNNTFTTGINKPPIHYVYSRKRLRTNAGAVAEELAKNEEQQHQTTGKRNRKTDEAASSSVAVRKSQRIRRTAVKAPVLLDKKKKKKKKLGDGDGAEKTNTISRKKPGKRKQTPHNKVTTSSSKMTVAGLSDAPNANGKDIVYPRLKEEQLAEACPVCCGNCNCKACLKSRKLIDSIKEKEEETNDHHQVERSKYILKALLPHLIRLDQDQMAEKEIEAKIQGLSLSELKIKKSNPHNDERMYCDNCKTSIFDYHRSCTECSFDLCLLCCRELRCGQLLGGADPFDFEFIFRGPNYLHGGDAEEVTRYKAPHAGAEPEIHTWSKSGWHADSDGNIPCPKPEIKCDHGYLELKSVFPPDCISELVCKAKELADSMKLQDAEVTLDNSCSCLKPVRNRGNKHNNAREAALCKESRGNFLYCPRAVDLHHDDLGHFQWHWSKGEPVIVSNVLECTSGLSWEPFVMWRAFRQINKNKNKSLLDVKALDCLDWCEIDINVHQFFTGYTNWPKDKQSWPQVLKLKDWPPSKLFEESLPRHCAEFISSLPFKEYTNPFKGALNLAVKLPDEVLKPDMGPKTYIAYGFAQELGRGDSVTRLHCDMSDAVNVLTHIAEAKLDRVSVDAIKKLKQKHLEQDKRELHGDIQDGETNVENSLLVGGGPLDGALWDIFRREDVPALQEYLKKHFREFRHVHCSPVEEVIHPIHDQTFYLTIGHKKKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHRSIEDKLEVKKMIVYAMIDVVKKLEKARSQ*