AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1415850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415850 MtrunA17_Chr5g0437131 84.667 300 38 1 88 379 239 538 7.97e-163 481
Msa1415850 MtrunA17_Chr8g0371291 78.667 150 25 1 379 528 80 222 3.68e-79 249
Msa1415850 MtrunA17_Chr6g0480541 61.991 221 62 5 213 421 859 1069 1.55e-73 255
Msa1415850 MtrunA17_Chr5g0406031 68.000 150 47 1 379 528 83 231 3.27e-65 213
Msa1415850 MtrunA17_Chr6g0480481 52.174 161 33 2 227 379 9 133 1.71e-41 149
Msa1415850 MtrunA17_Chr8g0369241 38.378 185 95 5 210 379 91 271 2.82e-24 108
Msa1415850 MtrunA17_Chr4g0060981 35.443 158 86 4 379 528 67 216 1.32e-21 93.6
Msa1415850 MtrunA17_Chr3g0126701 77.358 53 12 0 528 580 510 562 2.03e-20 95.9
Msa1415850 MtrunA17_Chr5g0444161 33.333 132 66 6 408 528 107 227 9.63e-14 71.2
Msa1415850 MtrunA17_Chr1g0147121 61.224 49 19 0 532 580 483 531 1.00e-13 74.7
Msa1415850 MtrunA17_Chr5g0444141 33.333 123 78 3 408 528 142 262 1.96e-12 67.8
Msa1415850 MtrunA17_Chr1g0210061 33.562 146 80 4 247 379 605 746 2.18e-12 70.1
Msa1415850 MtrunA17_Chr8g0388231 43.421 76 42 1 457 532 309 383 3.65e-12 68.6
Msa1415850 MtrunA17_Chr4g0067591 35.065 77 45 1 452 528 75 146 4.44e-12 67.0
Msa1415850 MtrunA17_Chr6g0451031 48.889 45 23 0 484 528 67 111 4.44e-12 63.5
Msa1415850 MtrunA17_Chr3g0128771 41.026 78 39 2 456 530 90 163 5.85e-12 64.7
Msa1415850 MtrunA17_Chr7g0246761 32.558 129 64 5 406 528 21 132 6.34e-12 64.7
Msa1415850 MtrunA17_Chr5g0411081 37.209 86 47 1 443 528 112 190 8.43e-12 67.0
Msa1415850 MtrunA17_Chr8g0366561 43.243 74 41 1 457 530 114 186 1.14e-11 66.6
Msa1415850 MtrunA17_Chr8g0369571 48.889 45 23 0 484 528 88 132 2.97e-11 62.8
Msa1415850 MtrunA17_Chr5g0437361 37.209 86 53 1 450 535 68 152 4.55e-11 62.0
Msa1415850 MtrunA17_Chr6g0451051 31.915 94 61 1 456 549 39 129 5.54e-11 61.2
Msa1415850 MtrunA17_Chr6g0451041 42.188 64 37 0 486 549 18 81 7.91e-11 59.3
Msa1415850 MtrunA17_Chr8g0383921 32.692 104 65 2 455 558 109 207 9.14e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415850 AT2G40120.1 72.941 170 38 1 218 379 227 396 4.45e-77 255
Msa1415850 AT1G73460.2 60.577 208 71 3 183 379 786 993 1.56e-70 247
Msa1415850 AT1G73460.1 60.577 208 71 3 183 379 786 993 1.56e-70 247
Msa1415850 AT1G73450.1 66.857 175 50 1 213 379 802 976 2.00e-70 246
Msa1415850 AT3G17750.1 64.571 175 54 1 213 379 788 962 1.46e-66 235
Msa1415850 AT2G17730.1 64.667 150 53 0 379 528 89 238 3.35e-63 208
Msa1415850 AT4G35840.1 64.667 150 53 0 379 528 84 233 1.81e-62 206
Msa1415850 AT5G66070.5 63.333 150 50 1 379 528 74 218 7.09e-59 196
Msa1415850 AT5G66070.1 63.333 150 50 1 379 528 74 218 7.09e-59 196
Msa1415850 AT2G17730.2 64.336 143 51 0 379 521 89 231 3.80e-58 195
Msa1415850 AT4G35840.2 53.297 182 53 1 379 528 84 265 8.72e-56 189
Msa1415850 AT5G66070.2 54.598 174 50 2 379 528 74 242 2.71e-53 182
Msa1415850 AT5G66070.4 58.929 112 41 1 380 491 75 181 6.33e-36 133
Msa1415850 AT5G66070.3 48.175 137 42 2 379 491 74 205 1.04e-28 114
Msa1415850 AT1G74410.1 36.000 150 93 1 381 530 74 220 3.18e-24 101
Msa1415850 AT5G35980.2 37.569 181 94 5 228 393 92 268 4.48e-23 104
Msa1415850 AT5G35980.3 37.705 183 91 6 228 393 57 233 4.61e-23 104
Msa1415850 AT5G35980.1 37.705 183 91 6 228 393 92 268 4.78e-23 104
Msa1415850 AT3G20395.1 33.333 123 76 2 408 529 97 214 7.74e-16 77.4
Msa1415850 AT3G18773.1 39.560 91 49 2 451 537 97 185 2.69e-13 70.1
Msa1415850 AT5G53430.1 52.632 57 27 0 526 582 486 542 9.76e-13 72.0
Msa1415850 AT1G49200.1 41.892 74 41 1 455 528 107 178 1.30e-12 68.2
Msa1415850 AT2G17450.1 37.179 78 45 1 455 528 67 144 3.78e-12 65.9
Msa1415850 AT5G05280.1 41.333 75 40 1 456 530 87 157 4.55e-12 65.5
Msa1415850 AT4G27910.1 52.941 51 24 0 532 582 477 527 1.30e-11 68.2
Msa1415850 AT5G17600.1 40.000 90 49 2 439 528 100 184 2.77e-11 65.9
Msa1415850 AT1G49210.1 40.541 74 42 1 455 528 106 177 2.88e-11 63.9
Msa1415850 AT5G01880.1 41.558 77 41 2 455 530 76 149 4.68e-11 62.0
Msa1415850 AT3G16720.1 36.364 77 45 1 452 528 89 161 5.35e-11 64.3
Msa1415850 AT2G27940.1 39.241 79 38 2 456 531 114 185 8.04e-11 63.2
Msa1415850 AT5G53110.1 35.443 79 50 1 457 535 302 379 8.20e-11 64.7
Msa1415850 AT5G10380.1 37.209 86 50 2 443 528 96 177 8.37e-11 63.9

Find 119 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTAGCTACCTTAATTTAA+AGG 0.143063 tig0024288:+49334 Msa1415850:CDS
CTTTGGCATTCGAATAATTC+TGG 0.197162 tig0024288:+50157 Msa1415850:CDS
CATAAATTCAACCAAGAATA+TGG 0.227119 tig0024288:+49980 Msa1415850:CDS
GCTTAATTTCCTTTAAATTA+AGG 0.237843 tig0024288:-49343 None:intergenic
ATGCTTCACCACCATATTCT+TGG 0.272074 tig0024288:-49991 None:intergenic
TTAAGGTAGCTAATGTTTAT+AGG 0.288253 tig0024288:-49326 None:intergenic
TGCTCACTGTCTCTGCATAA+TGG 0.302576 tig0024288:-50553 None:intergenic
ACAGAAAAGCAAGCACTTAA+TGG 0.303631 tig0024288:+50676 Msa1415850:CDS
TTCCTGTTCAATTTGCCTTC+AGG 0.305106 tig0024288:+50432 Msa1415850:CDS
TTGTATGTTCTATTGATCTT+TGG 0.316674 tig0024288:+50140 Msa1415850:CDS
CATTACTCGACAGTGTTTAG+AGG 0.319594 tig0024288:+50039 Msa1415850:CDS
GGTTAAACGTATGATGATAA+TGG 0.326660 tig0024288:-50489 None:intergenic
CATTCGAATAATTCTGGAAT+AGG 0.333342 tig0024288:+50163 Msa1415850:CDS
CACTTGTGATTGAGACTATT+GGG 0.340792 tig0024288:-50378 None:intergenic
GTTAAACGTATGATGATAAT+GGG 0.346709 tig0024288:-50488 None:intergenic
TAGCTTCGATCCGGAGGTTT+GGG 0.350467 tig0024288:-49068 None:intergenic
ATGCGCAATGGCTTCTTTCT+CGG 0.367067 tig0024288:-49243 None:intergenic
TCACTTGTGATTGAGACTAT+TGG 0.368196 tig0024288:-50379 None:intergenic
ATAGCTTCGATCCGGAGGTT+TGG 0.378202 tig0024288:-49069 None:intergenic
TTCTAACAGTCTCTCCCATT+TGG 0.383802 tig0024288:-50459 None:intergenic
GCTCACTGTCTCTGCATAAT+GGG 0.397596 tig0024288:-50552 None:intergenic
GCAATCTGAACTATGCTTCA+TGG 0.399375 tig0024288:-49426 None:intergenic
AGACAGAATTATGAGGCTTC+AGG 0.401315 tig0024288:-50102 None:intergenic
ATTGCAATATTTACATAACT+TGG 0.409904 tig0024288:+50063 Msa1415850:CDS
TAAGAAGCTTGATTTCATCT+AGG 0.411237 tig0024288:-49835 None:intergenic
TGCCTTCAGGATTTCCAAAT+GGG 0.419108 tig0024288:+50445 Msa1415850:CDS
GAGTGAAGAACTCCATGTTC+CGG 0.421411 tig0024288:+49541 Msa1415850:CDS
CGATCCGGAGGTTTGGGTAG+TGG 0.425881 tig0024288:-49062 None:intergenic
TTTCAACATATCTTTGACAT+TGG 0.427382 tig0024288:+50316 Msa1415850:CDS
GTTCAGCAGGTTCTTGTAGT+GGG 0.431132 tig0024288:+49300 Msa1415850:CDS
ATCCTGAAGGCAAATTGAAC+AGG 0.433788 tig0024288:-50434 None:intergenic
GTTGCTGCAGCAGCTCACGC+CGG 0.436700 tig0024288:+51389 Msa1415850:intron
GGATGTGACAGAGGCTTACT+AGG 0.444182 tig0024288:+50337 Msa1415850:CDS
GGCTTCTTTCTCGGCACTGA+GGG 0.450284 tig0024288:-49234 None:intergenic
TCTGGTGGTGCAGGAAGTGG+TGG 0.450710 tig0024288:-49140 None:intergenic
TATTTCAACAAACATGTAAT+GGG 0.455848 tig0024288:-49210 None:intergenic
TTATGACTATTTCTACCATC+AGG 0.460782 tig0024288:+49907 Msa1415850:CDS
TCTCCATCTGTGGCAGCCTC+CGG 0.462617 tig0024288:-49560 None:intergenic
TTGCTGCAGCAGCTCACGCC+GGG 0.462792 tig0024288:+51390 Msa1415850:intron
TTGCCTTCAGGATTTCCAAA+TGG 0.467728 tig0024288:+50444 Msa1415850:CDS
CTACAAGAACCTGCTGAACC+TGG 0.473048 tig0024288:-49296 None:intergenic
GTGTCTGGTGGTGCAGGAAG+TGG 0.476291 tig0024288:-49143 None:intergenic
TTGGGTAGTGGCGGCAGAGT+CGG 0.481200 tig0024288:-49050 None:intergenic
TAAGTTTGCACGCAGAAGTT+CGG 0.485105 tig0024288:-49948 None:intergenic
AAAAGCAGTCCAGGTTCAGC+AGG 0.497375 tig0024288:+49287 Msa1415850:CDS
CACTTAGTTGTGTGCAAGTG+TGG 0.500438 tig0024288:+50643 Msa1415850:CDS
CTGTGGCAGCCTCCGGAACA+TGG 0.502526 tig0024288:-49553 None:intergenic
GGTTCAGCAGGTTCTTGTAG+TGG 0.505056 tig0024288:+49299 Msa1415850:CDS
TTGCAATATTTACATAACTT+GGG 0.506178 tig0024288:+50064 Msa1415850:CDS
AGTATGTGGCGTTTATCTCC+CGG 0.506715 tig0024288:-49878 None:intergenic
GTTCCGGAGGCTGCCACAGA+TGG 0.508408 tig0024288:+49557 Msa1415850:CDS
ATCTTCTGATAGCTTCGATC+CGG 0.508560 tig0024288:-49077 None:intergenic
ATAGAGAAGACAGAATTATG+AGG 0.508809 tig0024288:-50109 None:intergenic
CACACAACTAAGTGTAGGCT+TGG 0.511853 tig0024288:-50634 None:intergenic
GTATTTCAACAAACATGTAA+TGG 0.512226 tig0024288:-49211 None:intergenic
CCATTGCTTTCAATCCCATT+CGG 0.516665 tig0024288:-49497 None:intergenic
ACCTACCTTGCATTGACAAG+TGG 0.517649 tig0024288:+50509 Msa1415850:CDS
ACCAGACACCGAAAATAGAT+TGG 0.519369 tig0024288:+49157 Msa1415850:CDS
GGAGTTCTTCACTCAAATAT+CGG 0.520249 tig0024288:-49532 None:intergenic
ATCTGTTTCAACAACTTCGA+TGG 0.530198 tig0024288:-49471 None:intergenic
GCCATTTGTTGATCATGCCC+CGG 0.533576 tig0024288:-51408 None:intergenic
TTGAAACAGATCTACCGAAT+GGG 0.535513 tig0024288:+49483 Msa1415850:CDS
TAAAGGAAATTAAGCTGAGT+CGG 0.536864 tig0024288:+49351 Msa1415850:CDS
GGTGGTGCAGGAAGTGGTGG+AGG 0.539230 tig0024288:-49137 None:intergenic
TCGGTTCAGCTACCTTCAGT+AGG 0.540246 tig0024288:+49753 Msa1415850:CDS
TTCTGATAGCTTCGATCCGG+AGG 0.545370 tig0024288:-49074 None:intergenic
GATTGTGCTGAACACGGTCA+TGG 0.546919 tig0024288:+49703 Msa1415850:CDS
GTGCATGGAAAGAATAGGAC+TGG 0.553009 tig0024288:+49656 Msa1415850:CDS
GCCGCCACTACCCAAACCTC+CGG 0.562559 tig0024288:+49058 Msa1415850:CDS
AACTTCAGAATTATGCGCAA+TGG 0.563755 tig0024288:-49255 None:intergenic
GTATGTGGCGTTTATCTCCC+GGG 0.564712 tig0024288:-49877 None:intergenic
TTCAGCAGGTTCTTGTAGTG+GGG 0.568017 tig0024288:+49301 Msa1415850:CDS
GTACAAGTCTCCCACTCACT+AGG 0.571667 tig0024288:-50219 None:intergenic
AGTCATAAAGACGCAGTATG+TGG 0.573921 tig0024288:-49892 None:intergenic
TGCAGGAAGTGGTGGAGGCA+AGG 0.579538 tig0024288:-49132 None:intergenic
GACAAGTGGCTCATCAAGCA+TGG 0.579677 tig0024288:+50523 Msa1415850:CDS
CTCCCATTTGGAAATCCTGA+AGG 0.579740 tig0024288:-50447 None:intergenic
GAATTGTGCATGGAAAGAAT+AGG 0.580039 tig0024288:+49651 Msa1415850:CDS
TTCAGTAGGGATGCTCTCGA+TGG 0.583985 tig0024288:+49767 Msa1415850:CDS
CGGTTCAGCTACCTTCAGTA+GGG 0.590898 tig0024288:+49754 Msa1415850:CDS
TGCTGCAGCAGCTCACGCCG+GGG 0.593738 tig0024288:+51391 Msa1415850:intron
GTTCAAAGTCAGATGGGTGC+AGG 0.598923 tig0024288:+50274 Msa1415850:CDS
AAAAGCAAGCACTTAATGGA+TGG 0.599900 tig0024288:+50680 Msa1415850:CDS
CAATGAATAAATGTTCCTGA+TGG 0.601057 tig0024288:-49922 None:intergenic
GAATGCTGTTCAAAGTCAGA+TGG 0.601226 tig0024288:+50267 Msa1415850:CDS
GGGATTGAAAGCAATGGAGT+AGG 0.601533 tig0024288:+49503 Msa1415850:CDS
TTATTACTAGCCTAGTGAGT+GGG 0.602053 tig0024288:+50209 Msa1415850:CDS
TGTGAATGTTTCGATAGTAG+TGG 0.604151 tig0024288:-49011 None:intergenic
GGTGAAATTCATCACAACAT+CGG 0.604562 tig0024288:+49178 Msa1415850:CDS
TCCGGAGGTTTGGGTAGTGG+CGG 0.605445 tig0024288:-49059 None:intergenic
ATGAGCCACTTGTCAATGCA+AGG 0.605600 tig0024288:-50514 None:intergenic
GTTGAAACAGATCTACCGAA+TGG 0.607989 tig0024288:+49482 Msa1415850:CDS
CCGAATGGGATTGAAAGCAA+TGG 0.608264 tig0024288:+49497 Msa1415850:CDS
TTTGACATTGGATGTGACAG+AGG 0.609823 tig0024288:+50328 Msa1415850:CDS
TTTGAGCTAAGAATTGTGCA+TGG 0.611242 tig0024288:+49641 Msa1415850:CDS
GACTGGATTTGAAGAAAACA+AGG 0.612197 tig0024288:+49673 Msa1415850:CDS
TGGCTTCTTTCTCGGCACTG+AGG 0.612609 tig0024288:-49235 None:intergenic
ATCGAGAGCATCCCTACTGA+AGG 0.612994 tig0024288:-49765 None:intergenic
GCATAGTTCAGATTGCTACA+AGG 0.615746 tig0024288:+49433 Msa1415850:CDS
TACTATGTGACAGATTATCT+CGG 0.618368 tig0024288:+49734 Msa1415850:CDS
ATTATTATCCTCTCCATCTG+TGG 0.619270 tig0024288:-49570 None:intergenic
TGAACACGGTCATGGCTGAA+AGG 0.620232 tig0024288:+49711 Msa1415850:CDS
CTTGTCGATAAGCACGACCC+GGG 0.628203 tig0024288:+49860 Msa1415850:CDS
ACTTGCACACAACTAAGTGT+AGG 0.640898 tig0024288:-50639 None:intergenic
ACTTTGAACAGCATTCAACA+TGG 0.643300 tig0024288:-50260 None:intergenic
GGAGGCTGCCACAGATGGAG+AGG 0.645603 tig0024288:+49562 Msa1415850:CDS
AAGCTATCAGAAGATTCTCG+TGG 0.653064 tig0024288:+49085 Msa1415850:CDS
ATTATTACTAGCCTAGTGAG+TGG 0.653310 tig0024288:+50208 Msa1415850:CDS
TGAAGAACTCCATGTTCCGG+AGG 0.656619 tig0024288:+49544 Msa1415850:CDS
AATGCTGTTCAAAGTCAGAT+GGG 0.656650 tig0024288:+50268 Msa1415850:CDS
ACTTGTCGATAAGCACGACC+CGG 0.656700 tig0024288:+49859 Msa1415850:CDS
GCTTCTTTCTCGGCACTGAG+GGG 0.663612 tig0024288:-49233 None:intergenic
AAATTCAACCAAGAATATGG+TGG 0.668921 tig0024288:+49983 Msa1415850:CDS
TTAAACGTATGATGATAATG+GGG 0.679275 tig0024288:-50487 None:intergenic
AGACTTGTACGTGAAAGAGT+TGG 0.691935 tig0024288:+50232 Msa1415850:CDS
GCCACTTGTCAATGCAAGGT+AGG 0.694066 tig0024288:-50510 None:intergenic
AATGGATGGCAACAACACAA+AGG 0.695166 tig0024288:+50694 Msa1415850:CDS
AGTGCTGATTGTGCTGAACA+CGG 0.717577 tig0024288:+49697 Msa1415850:CDS
AGAGTCGGAGTGAAAACACG+TGG 0.744559 tig0024288:-49035 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCAACAAACATGTAAT+GGG - tig0024288:49213-49232 None:intergenic 20.0%
!! GCTTAATTTCCTTTAAATTA+AGG - tig0024288:49346-49365 None:intergenic 20.0%
!! GAAGATTATTAAAAATGACA+AGG + tig0024288:49796-49815 Msa1415850:CDS 20.0%
!! ATTGCAATATTTACATAACT+TGG + tig0024288:50063-50082 Msa1415850:CDS 20.0%
!! TTGCAATATTTACATAACTT+GGG + tig0024288:50064-50083 Msa1415850:CDS 20.0%
!!! AAGATTAATGTTTTTTGCAA+TGG + tig0024288:50592-50611 Msa1415850:CDS 20.0%
!! TCTAGAAAATTACTAAGATT+TGG - tig0024288:51040-51059 None:intergenic 20.0%
!!! TTTTATTTTATTTCAACCCA+TGG + tig0024288:51079-51098 Msa1415850:intron 20.0%
!!! TTTATTTTATTTCAACCCAT+GGG + tig0024288:51080-51099 Msa1415850:intron 20.0%
!! TATTTCAACAAACATGTAAT+GGG - tig0024288:49213-49232 None:intergenic 20.0%
!! GCTTAATTTCCTTTAAATTA+AGG - tig0024288:49346-49365 None:intergenic 20.0%
!! GAAGATTATTAAAAATGACA+AGG + tig0024288:49796-49815 Msa1415850:CDS 20.0%
!! ATTGCAATATTTACATAACT+TGG + tig0024288:50063-50082 Msa1415850:CDS 20.0%
!! TTGCAATATTTACATAACTT+GGG + tig0024288:50064-50083 Msa1415850:CDS 20.0%
!!! AAGATTAATGTTTTTTGCAA+TGG + tig0024288:50592-50611 Msa1415850:CDS 20.0%
!! TCTAGAAAATTACTAAGATT+TGG - tig0024288:51040-51059 None:intergenic 20.0%
!!! TTTTATTTTATTTCAACCCA+TGG + tig0024288:51079-51098 Msa1415850:intron 20.0%
!!! TTTATTTTATTTCAACCCAT+GGG + tig0024288:51080-51099 Msa1415850:intron 20.0%
!! GAATTTCACCAATCTATTTT+CGG - tig0024288:49168-49187 None:intergenic 25.0%
! GTATTTCAACAAACATGTAA+TGG - tig0024288:49214-49233 None:intergenic 25.0%
! TTAAGGTAGCTAATGTTTAT+AGG - tig0024288:49329-49348 None:intergenic 25.0%
! CATTAGCTACCTTAATTTAA+AGG + tig0024288:49334-49353 Msa1415850:CDS 25.0%
! CATAAATTCAACCAAGAATA+TGG + tig0024288:49980-49999 Msa1415850:CDS 25.0%
! TTGTATGTTCTATTGATCTT+TGG + tig0024288:50140-50159 Msa1415850:CDS 25.0%
! TTTCAACATATCTTTGACAT+TGG + tig0024288:50316-50335 Msa1415850:CDS 25.0%
!! TTAAACGTATGATGATAATG+GGG - tig0024288:50490-50509 None:intergenic 25.0%
! GTTAAACGTATGATGATAAT+GGG - tig0024288:50491-50510 None:intergenic 25.0%
!! TGTTTTCCAATCTCTTAATT+TGG - tig0024288:50722-50741 None:intergenic 25.0%
! ATGCTACTATATTTCTTCAA+TGG + tig0024288:50806-50825 Msa1415850:intron 25.0%
! TGCTACTATATTTCTTCAAT+GGG + tig0024288:50807-50826 Msa1415850:intron 25.0%
!!! AAACTTGTTCTTTTCTATCT+AGG + tig0024288:51270-51289 Msa1415850:intron 25.0%
!! GAATTTCACCAATCTATTTT+CGG - tig0024288:49168-49187 None:intergenic 25.0%
! GTATTTCAACAAACATGTAA+TGG - tig0024288:49214-49233 None:intergenic 25.0%
! TTAAGGTAGCTAATGTTTAT+AGG - tig0024288:49329-49348 None:intergenic 25.0%
! CATTAGCTACCTTAATTTAA+AGG + tig0024288:49334-49353 Msa1415850:CDS 25.0%
! CATAAATTCAACCAAGAATA+TGG + tig0024288:49980-49999 Msa1415850:CDS 25.0%
! TTGTATGTTCTATTGATCTT+TGG + tig0024288:50140-50159 Msa1415850:CDS 25.0%
! TTTCAACATATCTTTGACAT+TGG + tig0024288:50316-50335 Msa1415850:CDS 25.0%
!! TTAAACGTATGATGATAATG+GGG - tig0024288:50490-50509 None:intergenic 25.0%
! GTTAAACGTATGATGATAAT+GGG - tig0024288:50491-50510 None:intergenic 25.0%
!! TGTTTTCCAATCTCTTAATT+TGG - tig0024288:50722-50741 None:intergenic 25.0%
! ATGCTACTATATTTCTTCAA+TGG + tig0024288:50806-50825 Msa1415850:intron 25.0%
! TGCTACTATATTTCTTCAAT+GGG + tig0024288:50807-50826 Msa1415850:intron 25.0%
!!! AAACTTGTTCTTTTCTATCT+AGG + tig0024288:51270-51289 Msa1415850:intron 25.0%
TAAAGGAAATTAAGCTGAGT+CGG + tig0024288:49351-49370 Msa1415850:CDS 30.0%
! TCGGAATGATTTTCATATGA+AGG + tig0024288:49370-49389 Msa1415850:CDS 30.0%
! CGGAATGATTTTCATATGAA+GGG + tig0024288:49371-49390 Msa1415850:CDS 30.0%
!! CATCTTGACTGTATTTTAAG+AGG - tig0024288:49607-49626 None:intergenic 30.0%
TACTATGTGACAGATTATCT+CGG + tig0024288:49734-49753 Msa1415850:CDS 30.0%
TAAGAAGCTTGATTTCATCT+AGG - tig0024288:49838-49857 None:intergenic 30.0%
!! TTATGACTATTTCTACCATC+AGG + tig0024288:49907-49926 Msa1415850:CDS 30.0%
CAATGAATAAATGTTCCTGA+TGG - tig0024288:49925-49944 None:intergenic 30.0%
AAATTCAACCAAGAATATGG+TGG + tig0024288:49983-50002 Msa1415850:CDS 30.0%
ATAGAGAAGACAGAATTATG+AGG - tig0024288:50112-50131 None:intergenic 30.0%
!! CATTCGAATAATTCTGGAAT+AGG + tig0024288:50163-50182 Msa1415850:CDS 30.0%
GGTTAAACGTATGATGATAA+TGG - tig0024288:50492-50511 None:intergenic 30.0%
AAGGTTCCAAATTAAGAGAT+TGG + tig0024288:50713-50732 Msa1415850:intron 30.0%
GTATTATTGTGAAAGACTCT+AGG + tig0024288:50743-50762 Msa1415850:intron 30.0%
TTTATCAAAATGAGAACTCG+AGG + tig0024288:50941-50960 Msa1415850:intron 30.0%
GAAAGAAATAACAAACCCAT+GGG - tig0024288:51098-51117 None:intergenic 30.0%
TGAAAGAAATAACAAACCCA+TGG - tig0024288:51099-51118 None:intergenic 30.0%
! AATCAAAAAGTGTACCTCTT+AGG - tig0024288:51145-51164 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG - tig0024288:51216-51235 None:intergenic 30.0%
TAAAGGAAATTAAGCTGAGT+CGG + tig0024288:49351-49370 Msa1415850:CDS 30.0%
! TCGGAATGATTTTCATATGA+AGG + tig0024288:49370-49389 Msa1415850:CDS 30.0%
! CGGAATGATTTTCATATGAA+GGG + tig0024288:49371-49390 Msa1415850:CDS 30.0%
!! CATCTTGACTGTATTTTAAG+AGG - tig0024288:49607-49626 None:intergenic 30.0%
TACTATGTGACAGATTATCT+CGG + tig0024288:49734-49753 Msa1415850:CDS 30.0%
TAAGAAGCTTGATTTCATCT+AGG - tig0024288:49838-49857 None:intergenic 30.0%
!! TTATGACTATTTCTACCATC+AGG + tig0024288:49907-49926 Msa1415850:CDS 30.0%
CAATGAATAAATGTTCCTGA+TGG - tig0024288:49925-49944 None:intergenic 30.0%
AAATTCAACCAAGAATATGG+TGG + tig0024288:49983-50002 Msa1415850:CDS 30.0%
ATAGAGAAGACAGAATTATG+AGG - tig0024288:50112-50131 None:intergenic 30.0%
!! CATTCGAATAATTCTGGAAT+AGG + tig0024288:50163-50182 Msa1415850:CDS 30.0%
GGTTAAACGTATGATGATAA+TGG - tig0024288:50492-50511 None:intergenic 30.0%
AAGGTTCCAAATTAAGAGAT+TGG + tig0024288:50713-50732 Msa1415850:intron 30.0%
GTATTATTGTGAAAGACTCT+AGG + tig0024288:50743-50762 Msa1415850:intron 30.0%
TTTATCAAAATGAGAACTCG+AGG + tig0024288:50941-50960 Msa1415850:intron 30.0%
GAAAGAAATAACAAACCCAT+GGG - tig0024288:51098-51117 None:intergenic 30.0%
TGAAAGAAATAACAAACCCA+TGG - tig0024288:51099-51118 None:intergenic 30.0%
! AATCAAAAAGTGTACCTCTT+AGG - tig0024288:51145-51164 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG - tig0024288:51216-51235 None:intergenic 30.0%
TGTGAATGTTTCGATAGTAG+TGG - tig0024288:49014-49033 None:intergenic 35.0%
GGTGAAATTCATCACAACAT+CGG + tig0024288:49178-49197 Msa1415850:CDS 35.0%
AACTTCAGAATTATGCGCAA+TGG - tig0024288:49258-49277 None:intergenic 35.0%
ATCTGTTTCAACAACTTCGA+TGG - tig0024288:49474-49493 None:intergenic 35.0%
TTGAAACAGATCTACCGAAT+GGG + tig0024288:49483-49502 Msa1415850:CDS 35.0%
GGAGTTCTTCACTCAAATAT+CGG - tig0024288:49535-49554 None:intergenic 35.0%
ATTATTATCCTCTCCATCTG+TGG - tig0024288:49573-49592 None:intergenic 35.0%
TTTGAGCTAAGAATTGTGCA+TGG + tig0024288:49641-49660 Msa1415850:CDS 35.0%
GAATTGTGCATGGAAAGAAT+AGG + tig0024288:49651-49670 Msa1415850:CDS 35.0%
GACTGGATTTGAAGAAAACA+AGG + tig0024288:49673-49692 Msa1415850:CDS 35.0%
CTTTGGCATTCGAATAATTC+TGG + tig0024288:50157-50176 Msa1415850:CDS 35.0%
! ATTATTACTAGCCTAGTGAG+TGG + tig0024288:50208-50227 Msa1415850:CDS 35.0%
! TTATTACTAGCCTAGTGAGT+GGG + tig0024288:50209-50228 Msa1415850:CDS 35.0%
ACTTTGAACAGCATTCAACA+TGG - tig0024288:50263-50282 None:intergenic 35.0%
AATGCTGTTCAAAGTCAGAT+GGG + tig0024288:50268-50287 Msa1415850:CDS 35.0%
CACTTGTGATTGAGACTATT+GGG - tig0024288:50381-50400 None:intergenic 35.0%
TCACTTGTGATTGAGACTAT+TGG - tig0024288:50382-50401 None:intergenic 35.0%
!! GACAACAATTTTGATGCTTG+TGG + tig0024288:50400-50419 Msa1415850:CDS 35.0%
ACAGAAAAGCAAGCACTTAA+TGG + tig0024288:50676-50695 Msa1415850:CDS 35.0%
AAAAGCAAGCACTTAATGGA+TGG + tig0024288:50680-50699 Msa1415850:CDS 35.0%
TAGAACTTATGTAGCCTAAG+AGG + tig0024288:51128-51147 Msa1415850:intron 35.0%
TCGAGAATTTCTCTCAATTC+TGG + tig0024288:51177-51196 Msa1415850:intron 35.0%
AGAATTTCTCTCAATTCTGG+TGG + tig0024288:51180-51199 Msa1415850:intron 35.0%
CCTATCAAAATAAGGGTTTC+CGG - tig0024288:51209-51228 None:intergenic 35.0%
GCGACAAACCTATCAAAATA+AGG - tig0024288:51217-51236 None:intergenic 35.0%
GCGACAAACTTGTGAAAATA+GGG - tig0024288:51246-51265 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG - tig0024288:51247-51266 None:intergenic 35.0%
GGGATGCAATACATAAAGTA+TGG + tig0024288:51335-51354 Msa1415850:intron 35.0%
TGTGAATGTTTCGATAGTAG+TGG - tig0024288:49014-49033 None:intergenic 35.0%
GGTGAAATTCATCACAACAT+CGG + tig0024288:49178-49197 Msa1415850:CDS 35.0%
AACTTCAGAATTATGCGCAA+TGG - tig0024288:49258-49277 None:intergenic 35.0%
ATCTGTTTCAACAACTTCGA+TGG - tig0024288:49474-49493 None:intergenic 35.0%
TTGAAACAGATCTACCGAAT+GGG + tig0024288:49483-49502 Msa1415850:CDS 35.0%
GGAGTTCTTCACTCAAATAT+CGG - tig0024288:49535-49554 None:intergenic 35.0%
ATTATTATCCTCTCCATCTG+TGG - tig0024288:49573-49592 None:intergenic 35.0%
TTTGAGCTAAGAATTGTGCA+TGG + tig0024288:49641-49660 Msa1415850:CDS 35.0%
GAATTGTGCATGGAAAGAAT+AGG + tig0024288:49651-49670 Msa1415850:CDS 35.0%
GACTGGATTTGAAGAAAACA+AGG + tig0024288:49673-49692 Msa1415850:CDS 35.0%
CTTTGGCATTCGAATAATTC+TGG + tig0024288:50157-50176 Msa1415850:CDS 35.0%
! ATTATTACTAGCCTAGTGAG+TGG + tig0024288:50208-50227 Msa1415850:CDS 35.0%
! TTATTACTAGCCTAGTGAGT+GGG + tig0024288:50209-50228 Msa1415850:CDS 35.0%
ACTTTGAACAGCATTCAACA+TGG - tig0024288:50263-50282 None:intergenic 35.0%
AATGCTGTTCAAAGTCAGAT+GGG + tig0024288:50268-50287 Msa1415850:CDS 35.0%
CACTTGTGATTGAGACTATT+GGG - tig0024288:50381-50400 None:intergenic 35.0%
TCACTTGTGATTGAGACTAT+TGG - tig0024288:50382-50401 None:intergenic 35.0%
!! GACAACAATTTTGATGCTTG+TGG + tig0024288:50400-50419 Msa1415850:CDS 35.0%
ACAGAAAAGCAAGCACTTAA+TGG + tig0024288:50676-50695 Msa1415850:CDS 35.0%
AAAAGCAAGCACTTAATGGA+TGG + tig0024288:50680-50699 Msa1415850:CDS 35.0%
TAGAACTTATGTAGCCTAAG+AGG + tig0024288:51128-51147 Msa1415850:intron 35.0%
TCGAGAATTTCTCTCAATTC+TGG + tig0024288:51177-51196 Msa1415850:intron 35.0%
AGAATTTCTCTCAATTCTGG+TGG + tig0024288:51180-51199 Msa1415850:intron 35.0%
CCTATCAAAATAAGGGTTTC+CGG - tig0024288:51209-51228 None:intergenic 35.0%
GCGACAAACCTATCAAAATA+AGG - tig0024288:51217-51236 None:intergenic 35.0%
GCGACAAACTTGTGAAAATA+GGG - tig0024288:51246-51265 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG - tig0024288:51247-51266 None:intergenic 35.0%
GGGATGCAATACATAAAGTA+TGG + tig0024288:51335-51354 Msa1415850:intron 35.0%
ATCTTCTGATAGCTTCGATC+CGG - tig0024288:49080-49099 None:intergenic 40.0%
AAGCTATCAGAAGATTCTCG+TGG + tig0024288:49085-49104 Msa1415850:CDS 40.0%
!!! AATCTATTTTCGGTGTCTGG+TGG - tig0024288:49158-49177 None:intergenic 40.0%
ACCAGACACCGAAAATAGAT+TGG + tig0024288:49157-49176 Msa1415850:CDS 40.0%
!!! ACCAATCTATTTTCGGTGTC+TGG - tig0024288:49161-49180 None:intergenic 40.0%
GCAATCTGAACTATGCTTCA+TGG - tig0024288:49429-49448 None:intergenic 40.0%
GCATAGTTCAGATTGCTACA+AGG + tig0024288:49433-49452 Msa1415850:CDS 40.0%
GTTGAAACAGATCTACCGAA+TGG + tig0024288:49482-49501 Msa1415850:CDS 40.0%
CCATTGCTTTCAATCCCATT+CGG - tig0024288:49500-49519 None:intergenic 40.0%
AGTCATAAAGACGCAGTATG+TGG - tig0024288:49895-49914 None:intergenic 40.0%
TAAGTTTGCACGCAGAAGTT+CGG - tig0024288:49951-49970 None:intergenic 40.0%
ATGCTTCACCACCATATTCT+TGG - tig0024288:49994-50013 None:intergenic 40.0%
CATTACTCGACAGTGTTTAG+AGG + tig0024288:50039-50058 Msa1415850:CDS 40.0%
AGACAGAATTATGAGGCTTC+AGG - tig0024288:50105-50124 None:intergenic 40.0%
AGACTTGTACGTGAAAGAGT+TGG + tig0024288:50232-50251 Msa1415850:CDS 40.0%
GAATGCTGTTCAAAGTCAGA+TGG + tig0024288:50267-50286 Msa1415850:CDS 40.0%
TTTGACATTGGATGTGACAG+AGG + tig0024288:50328-50347 Msa1415850:CDS 40.0%
TTCCTGTTCAATTTGCCTTC+AGG + tig0024288:50432-50451 Msa1415850:CDS 40.0%
ATCCTGAAGGCAAATTGAAC+AGG - tig0024288:50437-50456 None:intergenic 40.0%
TTGCCTTCAGGATTTCCAAA+TGG + tig0024288:50444-50463 Msa1415850:CDS 40.0%
TGCCTTCAGGATTTCCAAAT+GGG + tig0024288:50445-50464 Msa1415850:CDS 40.0%
TTCTAACAGTCTCTCCCATT+TGG - tig0024288:50462-50481 None:intergenic 40.0%
ACTTGCACACAACTAAGTGT+AGG - tig0024288:50642-50661 None:intergenic 40.0%
! TGTGCAAGTGTGGTTTTTGT+GGG + tig0024288:50653-50672 Msa1415850:CDS 40.0%
AATGGATGGCAACAACACAA+AGG + tig0024288:50694-50713 Msa1415850:CDS 40.0%
TTCACCATCCATTGTTCTAG+AGG - tig0024288:50772-50791 None:intergenic 40.0%
! TCTAGAACAATGGATGGTGA+AGG + tig0024288:50771-50790 Msa1415850:intron 40.0%
ATCCTCGCATTTCACTCAAT+GGG + tig0024288:50864-50883 Msa1415850:intron 40.0%
ATTGGAGGAGTAAACATGCA+TGG + tig0024288:50911-50930 Msa1415850:intron 40.0%
TTGGAGGAGTAAACATGCAT+GGG + tig0024288:50912-50931 Msa1415850:intron 40.0%
!!! CCGGAAACCCTTATTTTGAT+AGG + tig0024288:51206-51225 Msa1415850:intron 40.0%
ATCTTCTGATAGCTTCGATC+CGG - tig0024288:49080-49099 None:intergenic 40.0%
AAGCTATCAGAAGATTCTCG+TGG + tig0024288:49085-49104 Msa1415850:CDS 40.0%
!!! AATCTATTTTCGGTGTCTGG+TGG - tig0024288:49158-49177 None:intergenic 40.0%
ACCAGACACCGAAAATAGAT+TGG + tig0024288:49157-49176 Msa1415850:CDS 40.0%
!!! ACCAATCTATTTTCGGTGTC+TGG - tig0024288:49161-49180 None:intergenic 40.0%
GCAATCTGAACTATGCTTCA+TGG - tig0024288:49429-49448 None:intergenic 40.0%
GCATAGTTCAGATTGCTACA+AGG + tig0024288:49433-49452 Msa1415850:CDS 40.0%
GTTGAAACAGATCTACCGAA+TGG + tig0024288:49482-49501 Msa1415850:CDS 40.0%
CCATTGCTTTCAATCCCATT+CGG - tig0024288:49500-49519 None:intergenic 40.0%
AGTCATAAAGACGCAGTATG+TGG - tig0024288:49895-49914 None:intergenic 40.0%
TAAGTTTGCACGCAGAAGTT+CGG - tig0024288:49951-49970 None:intergenic 40.0%
ATGCTTCACCACCATATTCT+TGG - tig0024288:49994-50013 None:intergenic 40.0%
CATTACTCGACAGTGTTTAG+AGG + tig0024288:50039-50058 Msa1415850:CDS 40.0%
AGACAGAATTATGAGGCTTC+AGG - tig0024288:50105-50124 None:intergenic 40.0%
AGACTTGTACGTGAAAGAGT+TGG + tig0024288:50232-50251 Msa1415850:CDS 40.0%
GAATGCTGTTCAAAGTCAGA+TGG + tig0024288:50267-50286 Msa1415850:CDS 40.0%
TTTGACATTGGATGTGACAG+AGG + tig0024288:50328-50347 Msa1415850:CDS 40.0%
TTCCTGTTCAATTTGCCTTC+AGG + tig0024288:50432-50451 Msa1415850:CDS 40.0%
ATCCTGAAGGCAAATTGAAC+AGG - tig0024288:50437-50456 None:intergenic 40.0%
TTGCCTTCAGGATTTCCAAA+TGG + tig0024288:50444-50463 Msa1415850:CDS 40.0%
TGCCTTCAGGATTTCCAAAT+GGG + tig0024288:50445-50464 Msa1415850:CDS 40.0%
TTCTAACAGTCTCTCCCATT+TGG - tig0024288:50462-50481 None:intergenic 40.0%
ACTTGCACACAACTAAGTGT+AGG - tig0024288:50642-50661 None:intergenic 40.0%
! TGTGCAAGTGTGGTTTTTGT+GGG + tig0024288:50653-50672 Msa1415850:CDS 40.0%
AATGGATGGCAACAACACAA+AGG + tig0024288:50694-50713 Msa1415850:CDS 40.0%
TTCACCATCCATTGTTCTAG+AGG - tig0024288:50772-50791 None:intergenic 40.0%
! TCTAGAACAATGGATGGTGA+AGG + tig0024288:50771-50790 Msa1415850:intron 40.0%
ATCCTCGCATTTCACTCAAT+GGG + tig0024288:50864-50883 Msa1415850:intron 40.0%
ATTGGAGGAGTAAACATGCA+TGG + tig0024288:50911-50930 Msa1415850:intron 40.0%
TTGGAGGAGTAAACATGCAT+GGG + tig0024288:50912-50931 Msa1415850:intron 40.0%
!!! CCGGAAACCCTTATTTTGAT+AGG + tig0024288:51206-51225 Msa1415850:intron 40.0%
ATGCGCAATGGCTTCTTTCT+CGG - tig0024288:49246-49265 None:intergenic 45.0%
!! CCTGGACTGCTTTTGCAAAA+TGG - tig0024288:49281-49300 None:intergenic 45.0%
! CCATTTTGCAAAAGCAGTCC+AGG + tig0024288:49278-49297 Msa1415850:CDS 45.0%
GTTCAGCAGGTTCTTGTAGT+GGG + tig0024288:49300-49319 Msa1415850:CDS 45.0%
TTCAGCAGGTTCTTGTAGTG+GGG + tig0024288:49301-49320 Msa1415850:CDS 45.0%
CCGAATGGGATTGAAAGCAA+TGG + tig0024288:49497-49516 Msa1415850:CDS 45.0%
GGGATTGAAAGCAATGGAGT+AGG + tig0024288:49503-49522 Msa1415850:CDS 45.0%
GAGTGAAGAACTCCATGTTC+CGG + tig0024288:49541-49560 Msa1415850:CDS 45.0%
GTGCATGGAAAGAATAGGAC+TGG + tig0024288:49656-49675 Msa1415850:CDS 45.0%
!! AGTGCTGATTGTGCTGAACA+CGG + tig0024288:49697-49716 Msa1415850:CDS 45.0%
AGTATGTGGCGTTTATCTCC+CGG - tig0024288:49881-49900 None:intergenic 45.0%
CTCCCATTTGGAAATCCTGA+AGG - tig0024288:50450-50469 None:intergenic 45.0%
! ACCTACCTTGCATTGACAAG+TGG + tig0024288:50509-50528 Msa1415850:CDS 45.0%
ATGAGCCACTTGTCAATGCA+AGG - tig0024288:50517-50536 None:intergenic 45.0%
GCTCACTGTCTCTGCATAAT+GGG - tig0024288:50555-50574 None:intergenic 45.0%
TGCTCACTGTCTCTGCATAA+TGG - tig0024288:50556-50575 None:intergenic 45.0%
CACACAACTAAGTGTAGGCT+TGG - tig0024288:50637-50656 None:intergenic 45.0%
CACTTAGTTGTGTGCAAGTG+TGG + tig0024288:50643-50662 Msa1415850:CDS 45.0%
! GTGTGCAAGTGTGGTTTTTG+TGG + tig0024288:50652-50671 Msa1415850:CDS 45.0%
!! CTAGGCTACCTCTAGAACAA+TGG + tig0024288:50761-50780 Msa1415850:intron 45.0%
!! GCTACCTCTAGAACAATGGA+TGG + tig0024288:50765-50784 Msa1415850:intron 45.0%
CATCCTCGCATTTCACTCAA+TGG + tig0024288:50863-50882 Msa1415850:intron 45.0%
ATCCCATTGAGTGAAATGCG+AGG - tig0024288:50869-50888 None:intergenic 45.0%
CATTTCACTCAATGGGATCC+AGG + tig0024288:50871-50890 Msa1415850:intron 45.0%
!! CTCTCAATTCTGGTGGATTC+CGG + tig0024288:51187-51206 Msa1415850:intron 45.0%
CTTCCGTACTGCGTCAATAT+GGG + tig0024288:51315-51334 Msa1415850:intron 45.0%
CATCCCATATTGACGCAGTA+CGG - tig0024288:51321-51340 None:intergenic 45.0%
ATGCGCAATGGCTTCTTTCT+CGG - tig0024288:49246-49265 None:intergenic 45.0%
!! CCTGGACTGCTTTTGCAAAA+TGG - tig0024288:49281-49300 None:intergenic 45.0%
! CCATTTTGCAAAAGCAGTCC+AGG + tig0024288:49278-49297 Msa1415850:CDS 45.0%
GTTCAGCAGGTTCTTGTAGT+GGG + tig0024288:49300-49319 Msa1415850:CDS 45.0%
TTCAGCAGGTTCTTGTAGTG+GGG + tig0024288:49301-49320 Msa1415850:CDS 45.0%
CCGAATGGGATTGAAAGCAA+TGG + tig0024288:49497-49516 Msa1415850:CDS 45.0%
GGGATTGAAAGCAATGGAGT+AGG + tig0024288:49503-49522 Msa1415850:CDS 45.0%
GAGTGAAGAACTCCATGTTC+CGG + tig0024288:49541-49560 Msa1415850:CDS 45.0%
GTGCATGGAAAGAATAGGAC+TGG + tig0024288:49656-49675 Msa1415850:CDS 45.0%
!! AGTGCTGATTGTGCTGAACA+CGG + tig0024288:49697-49716 Msa1415850:CDS 45.0%
AGTATGTGGCGTTTATCTCC+CGG - tig0024288:49881-49900 None:intergenic 45.0%
CTCCCATTTGGAAATCCTGA+AGG - tig0024288:50450-50469 None:intergenic 45.0%
! ACCTACCTTGCATTGACAAG+TGG + tig0024288:50509-50528 Msa1415850:CDS 45.0%
ATGAGCCACTTGTCAATGCA+AGG - tig0024288:50517-50536 None:intergenic 45.0%
GCTCACTGTCTCTGCATAAT+GGG - tig0024288:50555-50574 None:intergenic 45.0%
TGCTCACTGTCTCTGCATAA+TGG - tig0024288:50556-50575 None:intergenic 45.0%
CACACAACTAAGTGTAGGCT+TGG - tig0024288:50637-50656 None:intergenic 45.0%
CACTTAGTTGTGTGCAAGTG+TGG + tig0024288:50643-50662 Msa1415850:CDS 45.0%
! GTGTGCAAGTGTGGTTTTTG+TGG + tig0024288:50652-50671 Msa1415850:CDS 45.0%
!! CTAGGCTACCTCTAGAACAA+TGG + tig0024288:50761-50780 Msa1415850:intron 45.0%
!! GCTACCTCTAGAACAATGGA+TGG + tig0024288:50765-50784 Msa1415850:intron 45.0%
CATCCTCGCATTTCACTCAA+TGG + tig0024288:50863-50882 Msa1415850:intron 45.0%
ATCCCATTGAGTGAAATGCG+AGG - tig0024288:50869-50888 None:intergenic 45.0%
CATTTCACTCAATGGGATCC+AGG + tig0024288:50871-50890 Msa1415850:intron 45.0%
!! CTCTCAATTCTGGTGGATTC+CGG + tig0024288:51187-51206 Msa1415850:intron 45.0%
CTTCCGTACTGCGTCAATAT+GGG + tig0024288:51315-51334 Msa1415850:intron 45.0%
CATCCCATATTGACGCAGTA+CGG - tig0024288:51321-51340 None:intergenic 45.0%
AGAGTCGGAGTGAAAACACG+TGG - tig0024288:49038-49057 None:intergenic 50.0%
TAGCTTCGATCCGGAGGTTT+GGG - tig0024288:49071-49090 None:intergenic 50.0%
ATAGCTTCGATCCGGAGGTT+TGG - tig0024288:49072-49091 None:intergenic 50.0%
TTCTGATAGCTTCGATCCGG+AGG - tig0024288:49077-49096 None:intergenic 50.0%
AAAAGCAGTCCAGGTTCAGC+AGG + tig0024288:49287-49306 Msa1415850:CDS 50.0%
CTACAAGAACCTGCTGAACC+TGG - tig0024288:49299-49318 None:intergenic 50.0%
GGTTCAGCAGGTTCTTGTAG+TGG + tig0024288:49299-49318 Msa1415850:CDS 50.0%
TGAAGAACTCCATGTTCCGG+AGG + tig0024288:49544-49563 Msa1415850:CDS 50.0%
GATTGTGCTGAACACGGTCA+TGG + tig0024288:49703-49722 Msa1415850:CDS 50.0%
TGAACACGGTCATGGCTGAA+AGG + tig0024288:49711-49730 Msa1415850:CDS 50.0%
TCGGTTCAGCTACCTTCAGT+AGG + tig0024288:49753-49772 Msa1415850:CDS 50.0%
CGGTTCAGCTACCTTCAGTA+GGG + tig0024288:49754-49773 Msa1415850:CDS 50.0%
!! ATCGAGAGCATCCCTACTGA+AGG - tig0024288:49768-49787 None:intergenic 50.0%
TTCAGTAGGGATGCTCTCGA+TGG + tig0024288:49767-49786 Msa1415850:CDS 50.0%
ACTTGTCGATAAGCACGACC+CGG + tig0024288:49859-49878 Msa1415850:CDS 50.0%
GTATGTGGCGTTTATCTCCC+GGG - tig0024288:49880-49899 None:intergenic 50.0%
GTACAAGTCTCCCACTCACT+AGG - tig0024288:50222-50241 None:intergenic 50.0%
GTTCAAAGTCAGATGGGTGC+AGG + tig0024288:50274-50293 Msa1415850:CDS 50.0%
GGATGTGACAGAGGCTTACT+AGG + tig0024288:50337-50356 Msa1415850:CDS 50.0%
GCCACTTGTCAATGCAAGGT+AGG - tig0024288:50513-50532 None:intergenic 50.0%
GACAAGTGGCTCATCAAGCA+TGG + tig0024288:50523-50542 Msa1415850:CDS 50.0%
TTCACTCAATGGGATCCAGG+AGG + tig0024288:50874-50893 Msa1415850:intron 50.0%
TCACTCAATGGGATCCAGGA+GGG + tig0024288:50875-50894 Msa1415850:intron 50.0%
GAGGGTGGTCTCTTGTTCAT+TGG + tig0024288:50893-50912 Msa1415850:intron 50.0%
GGTGGTCTCTTGTTCATTGG+AGG + tig0024288:50896-50915 Msa1415850:intron 50.0%
TGGAAGAGACTGATGCAGGA+GGG + tig0024288:50980-50999 Msa1415850:intron 50.0%
TGACGCAGTACGGAAGCTTA+GGG - tig0024288:51311-51330 None:intergenic 50.0%
TTGACGCAGTACGGAAGCTT+AGG - tig0024288:51312-51331 None:intergenic 50.0%
GCTTCCGTACTGCGTCAATA+TGG + tig0024288:51314-51333 Msa1415850:intron 50.0%
AGAGTCGGAGTGAAAACACG+TGG - tig0024288:49038-49057 None:intergenic 50.0%
TAGCTTCGATCCGGAGGTTT+GGG - tig0024288:49071-49090 None:intergenic 50.0%
ATAGCTTCGATCCGGAGGTT+TGG - tig0024288:49072-49091 None:intergenic 50.0%
TTCTGATAGCTTCGATCCGG+AGG - tig0024288:49077-49096 None:intergenic 50.0%
AAAAGCAGTCCAGGTTCAGC+AGG + tig0024288:49287-49306 Msa1415850:CDS 50.0%
CTACAAGAACCTGCTGAACC+TGG - tig0024288:49299-49318 None:intergenic 50.0%
GGTTCAGCAGGTTCTTGTAG+TGG + tig0024288:49299-49318 Msa1415850:CDS 50.0%
TGAAGAACTCCATGTTCCGG+AGG + tig0024288:49544-49563 Msa1415850:CDS 50.0%
GATTGTGCTGAACACGGTCA+TGG + tig0024288:49703-49722 Msa1415850:CDS 50.0%
TGAACACGGTCATGGCTGAA+AGG + tig0024288:49711-49730 Msa1415850:CDS 50.0%
TCGGTTCAGCTACCTTCAGT+AGG + tig0024288:49753-49772 Msa1415850:CDS 50.0%
CGGTTCAGCTACCTTCAGTA+GGG + tig0024288:49754-49773 Msa1415850:CDS 50.0%
!! ATCGAGAGCATCCCTACTGA+AGG - tig0024288:49768-49787 None:intergenic 50.0%
TTCAGTAGGGATGCTCTCGA+TGG + tig0024288:49767-49786 Msa1415850:CDS 50.0%
ACTTGTCGATAAGCACGACC+CGG + tig0024288:49859-49878 Msa1415850:CDS 50.0%
GTATGTGGCGTTTATCTCCC+GGG - tig0024288:49880-49899 None:intergenic 50.0%
GTACAAGTCTCCCACTCACT+AGG - tig0024288:50222-50241 None:intergenic 50.0%
GTTCAAAGTCAGATGGGTGC+AGG + tig0024288:50274-50293 Msa1415850:CDS 50.0%
GGATGTGACAGAGGCTTACT+AGG + tig0024288:50337-50356 Msa1415850:CDS 50.0%
GCCACTTGTCAATGCAAGGT+AGG - tig0024288:50513-50532 None:intergenic 50.0%
GACAAGTGGCTCATCAAGCA+TGG + tig0024288:50523-50542 Msa1415850:CDS 50.0%
TTCACTCAATGGGATCCAGG+AGG + tig0024288:50874-50893 Msa1415850:intron 50.0%
TCACTCAATGGGATCCAGGA+GGG + tig0024288:50875-50894 Msa1415850:intron 50.0%
GAGGGTGGTCTCTTGTTCAT+TGG + tig0024288:50893-50912 Msa1415850:intron 50.0%
GGTGGTCTCTTGTTCATTGG+AGG + tig0024288:50896-50915 Msa1415850:intron 50.0%
TGGAAGAGACTGATGCAGGA+GGG + tig0024288:50980-50999 Msa1415850:intron 50.0%
TGACGCAGTACGGAAGCTTA+GGG - tig0024288:51311-51330 None:intergenic 50.0%
TTGACGCAGTACGGAAGCTT+AGG - tig0024288:51312-51331 None:intergenic 50.0%
GCTTCCGTACTGCGTCAATA+TGG + tig0024288:51314-51333 Msa1415850:intron 50.0%
!!! TTTTCGGTGTCTGGTGGTGC+AGG - tig0024288:49152-49171 None:intergenic 55.0%
! GCTTCTTTCTCGGCACTGAG+GGG - tig0024288:49236-49255 None:intergenic 55.0%
! GGCTTCTTTCTCGGCACTGA+GGG - tig0024288:49237-49256 None:intergenic 55.0%
TGGCTTCTTTCTCGGCACTG+AGG - tig0024288:49238-49257 None:intergenic 55.0%
CTTGTCGATAAGCACGACCC+GGG + tig0024288:49860-49879 Msa1415850:CDS 55.0%
TGAACAAGAGACCACCCTCC+TGG - tig0024288:50892-50911 None:intergenic 55.0%
CTCGAGGTCGAGTTCTTCAG+AGG + tig0024288:50957-50976 Msa1415850:intron 55.0%
GAGGTCGAGTTCTTCAGAGG+TGG + tig0024288:50960-50979 Msa1415850:intron 55.0%
GAGGTGGAAGAGACTGATGC+AGG + tig0024288:50976-50995 Msa1415850:intron 55.0%
GTGGAAGAGACTGATGCAGG+AGG + tig0024288:50979-50998 Msa1415850:intron 55.0%
!!! TTTTCGGTGTCTGGTGGTGC+AGG - tig0024288:49152-49171 None:intergenic 55.0%
! GCTTCTTTCTCGGCACTGAG+GGG - tig0024288:49236-49255 None:intergenic 55.0%
! GGCTTCTTTCTCGGCACTGA+GGG - tig0024288:49237-49256 None:intergenic 55.0%
TGGCTTCTTTCTCGGCACTG+AGG - tig0024288:49238-49257 None:intergenic 55.0%
CTTGTCGATAAGCACGACCC+GGG + tig0024288:49860-49879 Msa1415850:CDS 55.0%
TGAACAAGAGACCACCCTCC+TGG - tig0024288:50892-50911 None:intergenic 55.0%
CTCGAGGTCGAGTTCTTCAG+AGG + tig0024288:50957-50976 Msa1415850:intron 55.0%
GAGGTCGAGTTCTTCAGAGG+TGG + tig0024288:50960-50979 Msa1415850:intron 55.0%
GAGGTGGAAGAGACTGATGC+AGG + tig0024288:50976-50995 Msa1415850:intron 55.0%
GTGGAAGAGACTGATGCAGG+AGG + tig0024288:50979-50998 Msa1415850:intron 55.0%
! TTGGGTAGTGGCGGCAGAGT+CGG - tig0024288:49053-49072 None:intergenic 60.0%
! TCCGGAGGTTTGGGTAGTGG+CGG - tig0024288:49062-49081 None:intergenic 60.0%
CGATCCGGAGGTTTGGGTAG+TGG - tig0024288:49065-49084 None:intergenic 60.0%
! TGCAGGAAGTGGTGGAGGCA+AGG - tig0024288:49135-49154 None:intergenic 60.0%
! TCTGGTGGTGCAGGAAGTGG+TGG - tig0024288:49143-49162 None:intergenic 60.0%
! GTGTCTGGTGGTGCAGGAAG+TGG - tig0024288:49146-49165 None:intergenic 60.0%
TCTCCATCTGTGGCAGCCTC+CGG - tig0024288:49563-49582 None:intergenic 60.0%
CTCAATGGGATCCAGGAGGG+TGG + tig0024288:50878-50897 Msa1415850:intron 60.0%
! TTGGGTAGTGGCGGCAGAGT+CGG - tig0024288:49053-49072 None:intergenic 60.0%
! TCCGGAGGTTTGGGTAGTGG+CGG - tig0024288:49062-49081 None:intergenic 60.0%
CGATCCGGAGGTTTGGGTAG+TGG - tig0024288:49065-49084 None:intergenic 60.0%
! TGCAGGAAGTGGTGGAGGCA+AGG - tig0024288:49135-49154 None:intergenic 60.0%
! TCTGGTGGTGCAGGAAGTGG+TGG - tig0024288:49143-49162 None:intergenic 60.0%
! GTGTCTGGTGGTGCAGGAAG+TGG - tig0024288:49146-49165 None:intergenic 60.0%
TCTCCATCTGTGGCAGCCTC+CGG - tig0024288:49563-49582 None:intergenic 60.0%
CTCAATGGGATCCAGGAGGG+TGG + tig0024288:50878-50897 Msa1415850:intron 60.0%
GCCGCCACTACCCAAACCTC+CGG + tig0024288:49058-49077 Msa1415850:CDS 65.0%
GGTGGTGCAGGAAGTGGTGG+AGG - tig0024288:49140-49159 None:intergenic 65.0%
CTGTGGCAGCCTCCGGAACA+TGG - tig0024288:49556-49575 None:intergenic 65.0%
GTTCCGGAGGCTGCCACAGA+TGG + tig0024288:49557-49576 Msa1415850:CDS 65.0%
GGAGGCTGCCACAGATGGAG+AGG + tig0024288:49562-49581 Msa1415850:CDS 65.0%
GTTGCTGCAGCAGCTCACGC+CGG + tig0024288:51389-51408 Msa1415850:intron 65.0%
TTGCTGCAGCAGCTCACGCC+GGG + tig0024288:51390-51409 Msa1415850:intron 65.0%
GCCGCCACTACCCAAACCTC+CGG + tig0024288:49058-49077 Msa1415850:CDS 65.0%
GGTGGTGCAGGAAGTGGTGG+AGG - tig0024288:49140-49159 None:intergenic 65.0%
CTGTGGCAGCCTCCGGAACA+TGG - tig0024288:49556-49575 None:intergenic 65.0%
GTTCCGGAGGCTGCCACAGA+TGG + tig0024288:49557-49576 Msa1415850:CDS 65.0%
GGAGGCTGCCACAGATGGAG+AGG + tig0024288:49562-49581 Msa1415850:CDS 65.0%
GTTGCTGCAGCAGCTCACGC+CGG + tig0024288:51389-51408 Msa1415850:intron 65.0%
TTGCTGCAGCAGCTCACGCC+GGG + tig0024288:51390-51409 Msa1415850:intron 65.0%
TGCTGCAGCAGCTCACGCCG+GGG + tig0024288:51391-51410 Msa1415850:intron 70.0%
TGCTGCAGCAGCTCACGCCG+GGG + tig0024288:51391-51410 Msa1415850:intron 70.0%
Chromosome Type Strat End Strand Name
tig0024288 gene 48981 51418 48981 ID=Msa1415850;Name=Msa1415850
tig0024288 mRNA 48981 51418 48981 ID=Msa1415850-mRNA-1;Parent=Msa1415850;Name=Msa1415850-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.5|1|1|2|0|584
tig0024288 exon 48981 50715 48981 ID=Msa1415850-mRNA-1:exon:22638;Parent=Msa1415850-mRNA-1
tig0024288 exon 51399 51418 51399 ID=Msa1415850-mRNA-1:exon:22639;Parent=Msa1415850-mRNA-1
tig0024288 CDS 48981 50715 48981 ID=Msa1415850-mRNA-1:cds;Parent=Msa1415850-mRNA-1
tig0024288 CDS 51399 51418 51399 ID=Msa1415850-mRNA-1:cds;Parent=Msa1415850-mRNA-1
Gene Sequence

>Msa1415850

ATGTTAAACACATCATCTTTGAATTGTAATCCACTACTATCGAAACATTCACATCCACGTGTTTTCACTCCGACTCTGCCGCCACTACCCAAACCTCCGGATCGAAGCTATCAGAAGATTCTCGTGGATTTTCAAGTGACACAAAATTTCACCTTGCCTCCACCACTTCCTGCACCACCAGACACCGAAAATAGATTGGTGAAATTCATCACAACATCGGTTTCTTGCGCCCATTACATGTTTGTTGAAATACCCCTCAGTGCCGAGAAAGAAGCCATTGCGCATAATTCTGAAGTTCCATTTTGCAAAAGCAGTCCAGGTTCAGCAGGTTCTTGTAGTGGGGATCCTATAAACATTAGCTACCTTAATTTAAAGGAAATTAAGCTGAGTCGGAATGATTTTCATATGAAGGGTATTAATTCTTTTGATTTTGTTCATGTGCTTACCATGAAGCATAGTTCAGATTGCTACAAGGATCTCTATGACTTAACCATCGAAGTTGTTGAAACAGATCTACCGAATGGGATTGAAAGCAATGGAGTAGGTGATGACCGATATTTGAGTGAAGAACTCCATGTTCCGGAGGCTGCCACAGATGGAGAGGATAATAATACTAATGACGACCTCTTAAAATACAGTCAAGATGATGAATATGAAGTATTTGAGCTAAGAATTGTGCATGGAAAGAATAGGACTGGATTTGAAGAAAACAAGGAAGTGCTGATTGTGCTGAACACGGTCATGGCTGAAAGGTACTATGTGACAGATTATCTCGGTTCAGCTACCTTCAGTAGGGATGCTCTCGATGGTTGTTTGAAGATTATTAAAAATGACAAGGATTTCTTTCATCAAAGCCTAGATGAAATCAAGCTTCTTAAACTTGTCGATAAGCACGACCCGGGAGATAAACGCCACATACTGCGTCTTTATGACTATTTCTACCATCAGGAACATTTATTCATTGTGACCGAACTTCTGCGTGCAAACTTATATGAATTTCATAAATTCAACCAAGAATATGGTGGTGAAGCATATTTTACATTAAAGAGATTGCAGCTCATTACTCGACAGTGTTTAGAGGCATTGCAATATTTACATAACTTGGGAATTATTCAATGTGACCTGAAGCCTCATAATTCTGTCTTCTCTATTGAAGTATTTGTATGTTCTATTGATCTTTGGCATTCGAATAATTCTGGAATAGGATGTTTCTTATACTTGATTGATATTATTACTAGCCTAGTGAGTGGGAGACTTGTACGTGAAAGAGTTGGTGAAGCCATGTTGAATGCTGTTCAAAGTCAGATGGGTGCAGGTGAAATGAGATTTTATGAGTTTCAACATATCTTTGACATTGGATGTGACAGAGGCTTACTAGGAGCTTCAGTTGAAAAGATCCCAATAGTCTCAATCACAAGTGACAACAATTTTGATGCTTGTGGCGATATAATTTCCTGTTCAATTTGCCTTCAGGATTTCCAAATGGGAGAGACTGTTAGAAGCTTGCCCCATTATCATCATACGTTTAACCTACCTTGCATTGACAAGTGGCTCATCAAGCATGGCTTGTGCCCATTATGCAGAGACAGTGAGCAGCTAGTGCTTTCAAATAAGATTAATGTTTTTTGCAATGGCGTGAAAAGCATATATTTTCCAAGCCTACACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCACTTAATGGATGGCAACAACACAAAGCAGCTCACGCCGGGGCATGA

Protein sequence

>Msa1415850

MLNTSSLNCNPLLSKHSHPRVFTPTLPPLPKPPDRSYQKILVDFQVTQNFTLPPPLPAPPDTENRLVKFITTSVSCAHYMFVEIPLSAEKEAIAHNSEVPFCKSSPGSAGSCSGDPINISYLNLKEIKLSRNDFHMKGINSFDFVHVLTMKHSSDCYKDLYDLTIEVVETDLPNGIESNGVGDDRYLSEELHVPEAATDGEDNNTNDDLLKYSQDDEYEVFELRIVHGKNRTGFEENKEVLIVLNTVMAERYYVTDYLGSATFSRDALDGCLKIIKNDKDFFHQSLDEIKLLKLVDKHDPGDKRHILRLYDYFYHQEHLFIVTELLRANLYEFHKFNQEYGGEAYFTLKRLQLITRQCLEALQYLHNLGIIQCDLKPHNSVFSIEVFVCSIDLWHSNNSGIGCFLYLIDIITSLVSGRLVRERVGEAMLNAVQSQMGAGEMRFYEFQHIFDIGCDRGLLGASVEKIPIVSITSDNNFDACGDIISCSICLQDFQMGETVRSLPHYHHTFNLPCIDKWLIKHGLCPLCRDSEQLVLSNKINVFCNGVKSIYFPSLHLVVCKCGFCGTEKQALNGWQQHKAAHAGA*