Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1415950 | sp|Q9M384|SCR_ARATH | 51.392 | 395 | 179 | 6 | 76 | 461 | 263 | 653 | 9.93e-129 | 390 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1415950 | A0A072VL08 | 98.056 | 463 | 9 | 0 | 1 | 463 | 6 | 468 | 0.0 | 944 |
Gene ID | Type | Classification |
---|---|---|
Msa1415950 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1415950 | MtrunA17_Chr1g0183641 | 98.056 | 463 | 9 | 0 | 1 | 463 | 20 | 482 | 0.0 | 944 |
Msa1415950 | MtrunA17_Chr7g0245601 | 53.803 | 355 | 156 | 5 | 107 | 457 | 441 | 791 | 2.89e-127 | 388 |
Msa1415950 | MtrunA17_Chr4g0038761 | 50.559 | 358 | 167 | 4 | 107 | 457 | 87 | 441 | 8.45e-120 | 357 |
Msa1415950 | MtrunA17_Chr7g0224271 | 34.359 | 390 | 227 | 9 | 94 | 459 | 290 | 674 | 9.44e-64 | 218 |
Msa1415950 | MtrunA17_Chr3g0110971 | 33.850 | 387 | 220 | 9 | 96 | 457 | 211 | 586 | 1.95e-60 | 207 |
Msa1415950 | MtrunA17_Chr8g0376381 | 33.957 | 374 | 222 | 10 | 96 | 457 | 161 | 521 | 2.18e-57 | 198 |
Msa1415950 | MtrunA17_Chr4g0057291 | 35.171 | 381 | 225 | 10 | 97 | 458 | 285 | 662 | 1.86e-56 | 198 |
Msa1415950 | MtrunA17_Chr2g0319091 | 30.787 | 432 | 261 | 14 | 49 | 457 | 162 | 578 | 2.55e-49 | 177 |
Msa1415950 | MtrunA17_Chr4g0039661 | 32.984 | 382 | 214 | 11 | 101 | 457 | 190 | 554 | 2.55e-48 | 174 |
Msa1415950 | MtrunA17_Chr2g0306641 | 31.658 | 398 | 230 | 12 | 85 | 457 | 106 | 486 | 5.56e-48 | 172 |
Msa1415950 | MtrunA17_Chr5g0424131 | 32.426 | 404 | 243 | 10 | 84 | 459 | 99 | 500 | 5.56e-48 | 172 |
Msa1415950 | MtrunA17_Chr3g0114841 | 31.910 | 398 | 233 | 12 | 97 | 462 | 113 | 504 | 2.28e-47 | 170 |
Msa1415950 | MtrunA17_Chr1g0159461 | 32.275 | 378 | 221 | 12 | 104 | 457 | 225 | 591 | 5.15e-47 | 171 |
Msa1415950 | MtrunA17_Chr8g0357601 | 32.821 | 390 | 222 | 12 | 96 | 457 | 174 | 551 | 2.64e-45 | 166 |
Msa1415950 | MtrunA17_Chr3g0125811 | 31.915 | 376 | 225 | 11 | 104 | 457 | 203 | 569 | 4.86e-45 | 165 |
Msa1415950 | MtrunA17_Chr4g0057891 | 29.535 | 430 | 260 | 13 | 53 | 459 | 112 | 521 | 2.42e-44 | 162 |
Msa1415950 | MtrunA17_Chr1g0200401 | 31.078 | 399 | 230 | 15 | 94 | 457 | 70 | 458 | 6.89e-44 | 160 |
Msa1415950 | MtrunA17_Chr4g0076091 | 30.649 | 385 | 233 | 12 | 99 | 459 | 170 | 544 | 1.10e-42 | 158 |
Msa1415950 | MtrunA17_Chr2g0328391 | 28.125 | 384 | 246 | 11 | 98 | 458 | 293 | 669 | 7.19e-41 | 155 |
Msa1415950 | MtrunA17_Chr3g0101141 | 29.973 | 377 | 239 | 12 | 100 | 457 | 171 | 541 | 2.22e-40 | 152 |
Msa1415950 | MtrunA17_Chr5g0445331 | 29.167 | 432 | 277 | 14 | 50 | 457 | 105 | 531 | 2.63e-40 | 151 |
Msa1415950 | MtrunA17_Chr5g0447691 | 29.787 | 376 | 241 | 10 | 100 | 457 | 173 | 543 | 1.11e-39 | 150 |
Msa1415950 | MtrunA17_Chr7g0238891 | 28.230 | 418 | 260 | 14 | 60 | 457 | 342 | 739 | 5.54e-39 | 150 |
Msa1415950 | MtrunA17_Chr4g0031711 | 26.667 | 420 | 272 | 13 | 68 | 458 | 321 | 733 | 5.14e-38 | 147 |
Msa1415950 | MtrunA17_Chr4g0031701 | 26.425 | 386 | 252 | 11 | 96 | 456 | 246 | 624 | 2.94e-37 | 144 |
Msa1415950 | MtrunA17_Chr4g0031731 | 26.684 | 386 | 251 | 11 | 96 | 456 | 246 | 624 | 6.37e-37 | 143 |
Msa1415950 | MtrunA17_Chr4g0038851 | 28.375 | 437 | 236 | 13 | 96 | 460 | 40 | 471 | 1.17e-36 | 140 |
Msa1415950 | MtrunA17_Chr2g0294471 | 28.424 | 387 | 249 | 11 | 94 | 457 | 194 | 575 | 2.42e-36 | 141 |
Msa1415950 | MtrunA17_Chr3g0085681 | 26.353 | 425 | 246 | 10 | 98 | 460 | 19 | 438 | 9.48e-36 | 137 |
Msa1415950 | MtrunA17_Chr4g0031721 | 29.134 | 381 | 242 | 13 | 99 | 458 | 311 | 684 | 1.13e-35 | 140 |
Msa1415950 | MtrunA17_Chr2g0328341 | 28.947 | 380 | 248 | 11 | 96 | 458 | 264 | 638 | 2.35e-35 | 139 |
Msa1415950 | MtrunA17_Chr4g0031741 | 28.646 | 384 | 238 | 14 | 99 | 458 | 279 | 650 | 2.66e-35 | 139 |
Msa1415950 | MtrunA17_Chr2g0294461 | 26.923 | 390 | 254 | 12 | 94 | 457 | 200 | 584 | 7.74e-34 | 134 |
Msa1415950 | MtrunA17_Chr2g0290241 | 26.448 | 397 | 264 | 10 | 87 | 459 | 34 | 426 | 3.35e-33 | 130 |
Msa1415950 | MtrunA17_Chr2g0328381 | 28.232 | 379 | 250 | 11 | 96 | 457 | 267 | 640 | 1.95e-32 | 130 |
Msa1415950 | MtrunA17_Chr7g0270031 | 26.913 | 379 | 258 | 9 | 94 | 457 | 179 | 553 | 3.64e-32 | 129 |
Msa1415950 | MtrunA17_Chr2g0328411 | 25.984 | 381 | 251 | 12 | 98 | 457 | 283 | 653 | 5.44e-31 | 126 |
Msa1415950 | MtrunA17_Chr2g0328431 | 26.178 | 382 | 251 | 13 | 98 | 458 | 283 | 654 | 7.44e-29 | 120 |
Msa1415950 | MtrunA17_Chr5g0401131 | 27.154 | 383 | 243 | 14 | 104 | 457 | 114 | 489 | 1.04e-28 | 118 |
Msa1415950 | MtrunA17_Chr5g0396491 | 33.333 | 204 | 129 | 3 | 96 | 294 | 48 | 249 | 1.04e-28 | 118 |
Msa1415950 | MtrunA17_Chr5g0396491 | 34.483 | 145 | 91 | 4 | 318 | 460 | 338 | 480 | 6.41e-16 | 80.1 |
Msa1415950 | MtrunA17_Chr8g0383981 | 26.542 | 373 | 249 | 11 | 100 | 458 | 135 | 496 | 5.43e-27 | 113 |
Msa1415950 | MtrunA17_Chr2g0328371 | 33.473 | 239 | 143 | 8 | 174 | 399 | 4 | 239 | 6.17e-27 | 108 |
Msa1415950 | MtrunA17_Chr3g0085361 | 26.316 | 342 | 190 | 9 | 176 | 460 | 16 | 352 | 2.85e-26 | 109 |
Msa1415950 | MtrunA17_Chr2g0329591 | 25.714 | 455 | 290 | 17 | 40 | 457 | 7 | 450 | 1.17e-25 | 108 |
Msa1415950 | MtrunA17_Chr2g0328401 | 25.762 | 361 | 242 | 12 | 99 | 441 | 285 | 637 | 2.76e-25 | 109 |
Msa1415950 | MtrunA17_Chr2g0328361 | 25.729 | 377 | 237 | 11 | 96 | 457 | 266 | 614 | 4.32e-25 | 108 |
Msa1415950 | MtrunA17_Chr4g0012071 | 25.000 | 364 | 234 | 11 | 114 | 459 | 210 | 552 | 1.35e-23 | 103 |
Msa1415950 | MtrunA17_Chr7g0230731 | 27.273 | 374 | 244 | 14 | 101 | 459 | 369 | 729 | 1.11e-21 | 98.2 |
Msa1415950 | MtrunA17_Chr7g0236851 | 27.297 | 370 | 244 | 13 | 105 | 457 | 295 | 656 | 1.51e-21 | 97.8 |
Msa1415950 | MtrunA17_Chr6g0468561 | 25.737 | 373 | 250 | 10 | 105 | 457 | 296 | 661 | 1.09e-20 | 95.1 |
Msa1415950 | MtrunA17_Chr1g0194621 | 24.927 | 341 | 233 | 11 | 137 | 457 | 180 | 517 | 1.26e-20 | 94.7 |
Msa1415950 | MtrunA17_Chr7g0230771 | 26.738 | 374 | 246 | 15 | 101 | 459 | 372 | 732 | 8.54e-20 | 92.4 |
Msa1415950 | MtrunA17_Chr4g0053901 | 24.163 | 418 | 244 | 14 | 104 | 457 | 59 | 467 | 2.05e-19 | 90.5 |
Msa1415950 | MtrunA17_Chr5g0401421 | 23.628 | 419 | 247 | 17 | 104 | 457 | 35 | 445 | 1.03e-18 | 88.2 |
Msa1415950 | MtrunA17_Chr8g0344101 | 23.785 | 391 | 247 | 12 | 104 | 457 | 223 | 599 | 1.30e-15 | 79.3 |
Msa1415950 | MtrunA17_Chr8g0373561 | 23.826 | 298 | 205 | 10 | 174 | 459 | 255 | 542 | 3.90e-15 | 77.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1415950 | AT3G54220.1 | 51.392 | 395 | 179 | 6 | 76 | 461 | 263 | 653 | 1.01e-129 | 390 |
Msa1415950 | AT5G41920.1 | 47.721 | 373 | 178 | 7 | 98 | 460 | 37 | 402 | 3.47e-113 | 339 |
Msa1415950 | AT1G14920.1 | 34.218 | 377 | 229 | 11 | 96 | 461 | 164 | 532 | 1.47e-58 | 201 |
Msa1415950 | AT2G01570.1 | 34.392 | 378 | 229 | 10 | 96 | 462 | 216 | 585 | 1.39e-57 | 200 |
Msa1415950 | AT1G66350.1 | 34.595 | 370 | 223 | 9 | 96 | 457 | 147 | 505 | 7.62e-57 | 196 |
Msa1415950 | AT3G03450.1 | 33.600 | 375 | 231 | 11 | 96 | 457 | 175 | 544 | 8.74e-57 | 197 |
Msa1415950 | AT5G17490.1 | 33.602 | 372 | 229 | 12 | 96 | 457 | 152 | 515 | 2.42e-53 | 187 |
Msa1415950 | AT1G63100.1 | 33.333 | 387 | 231 | 11 | 97 | 458 | 245 | 629 | 7.65e-51 | 182 |
Msa1415950 | AT1G63100.2 | 33.333 | 387 | 231 | 11 | 97 | 458 | 270 | 654 | 1.31e-50 | 182 |
Msa1415950 | AT5G66770.1 | 33.422 | 374 | 225 | 13 | 101 | 457 | 217 | 583 | 1.37e-50 | 181 |
Msa1415950 | AT3G50650.1 | 33.631 | 336 | 201 | 10 | 140 | 457 | 210 | 541 | 8.04e-44 | 162 |
Msa1415950 | AT2G04890.1 | 30.541 | 370 | 239 | 10 | 100 | 457 | 49 | 412 | 1.05e-42 | 156 |
Msa1415950 | AT1G55580.1 | 33.108 | 296 | 180 | 7 | 179 | 457 | 150 | 444 | 1.05e-41 | 154 |
Msa1415950 | AT1G50600.3 | 30.585 | 376 | 238 | 10 | 100 | 457 | 155 | 525 | 9.04e-39 | 147 |
Msa1415950 | AT1G50600.2 | 30.585 | 376 | 238 | 10 | 100 | 457 | 230 | 600 | 2.40e-38 | 147 |
Msa1415950 | AT1G50600.1 | 30.585 | 376 | 238 | 10 | 100 | 457 | 226 | 596 | 2.58e-38 | 147 |
Msa1415950 | AT1G21450.1 | 30.024 | 413 | 258 | 12 | 69 | 457 | 187 | 592 | 2.85e-38 | 147 |
Msa1415950 | AT5G48150.1 | 29.491 | 373 | 237 | 11 | 105 | 457 | 123 | 489 | 4.50e-38 | 145 |
Msa1415950 | AT5G48150.4 | 29.491 | 373 | 237 | 11 | 105 | 457 | 123 | 489 | 4.50e-38 | 145 |
Msa1415950 | AT5G48150.2 | 29.491 | 373 | 237 | 11 | 105 | 457 | 123 | 489 | 4.50e-38 | 145 |
Msa1415950 | AT5G48150.3 | 29.491 | 373 | 237 | 11 | 105 | 457 | 123 | 489 | 4.50e-38 | 145 |
Msa1415950 | AT1G07530.1 | 28.606 | 409 | 264 | 13 | 77 | 462 | 366 | 769 | 5.14e-38 | 147 |
Msa1415950 | AT2G29065.1 | 27.877 | 391 | 246 | 11 | 97 | 458 | 245 | 628 | 6.30e-37 | 144 |
Msa1415950 | AT1G07520.2 | 27.013 | 385 | 256 | 9 | 97 | 458 | 147 | 529 | 6.36e-37 | 142 |
Msa1415950 | AT1G07520.4 | 27.013 | 385 | 256 | 9 | 97 | 458 | 147 | 529 | 6.36e-37 | 142 |
Msa1415950 | AT1G07520.3 | 27.013 | 385 | 256 | 9 | 97 | 458 | 312 | 694 | 1.13e-36 | 143 |
Msa1415950 | AT1G07520.1 | 27.013 | 385 | 256 | 9 | 97 | 458 | 311 | 693 | 1.18e-36 | 143 |
Msa1415950 | AT4G08250.1 | 29.487 | 390 | 246 | 13 | 97 | 463 | 100 | 483 | 7.54e-36 | 139 |
Msa1415950 | AT5G59450.1 | 26.098 | 387 | 247 | 13 | 99 | 457 | 222 | 597 | 7.14e-35 | 137 |
Msa1415950 | AT2G29060.2 | 27.105 | 380 | 252 | 11 | 100 | 458 | 280 | 655 | 8.49e-35 | 137 |
Msa1415950 | AT2G29060.1 | 27.105 | 380 | 252 | 11 | 100 | 458 | 317 | 692 | 9.51e-35 | 137 |
Msa1415950 | AT4G17230.1 | 29.443 | 377 | 243 | 10 | 99 | 457 | 153 | 524 | 3.43e-33 | 132 |
Msa1415950 | AT4G17230.2 | 29.443 | 377 | 243 | 10 | 99 | 457 | 153 | 524 | 3.43e-33 | 132 |
Msa1415950 | AT3G46600.1 | 27.154 | 383 | 250 | 11 | 96 | 457 | 204 | 578 | 9.78e-33 | 131 |
Msa1415950 | AT3G46600.3 | 27.154 | 383 | 250 | 11 | 96 | 457 | 172 | 546 | 1.23e-32 | 130 |
Msa1415950 | AT3G46600.2 | 27.200 | 375 | 244 | 11 | 104 | 457 | 4 | 370 | 5.65e-32 | 126 |
Msa1415950 | AT4G37650.1 | 25.831 | 391 | 247 | 14 | 103 | 457 | 145 | 528 | 2.23e-28 | 118 |
Msa1415950 | AT2G37650.2 | 24.668 | 377 | 260 | 11 | 99 | 457 | 330 | 700 | 6.54e-28 | 117 |
Msa1415950 | AT2G37650.1 | 24.668 | 377 | 260 | 11 | 99 | 457 | 342 | 712 | 8.32e-28 | 117 |
Msa1415950 | AT5G52510.1 | 28.125 | 384 | 232 | 13 | 105 | 457 | 269 | 639 | 1.14e-26 | 113 |
Msa1415950 | AT3G49950.1 | 25.191 | 393 | 258 | 12 | 95 | 457 | 21 | 407 | 3.09e-24 | 104 |
Msa1415950 | AT1G50420.1 | 30.769 | 221 | 135 | 5 | 89 | 294 | 35 | 252 | 3.62e-24 | 105 |
Msa1415950 | AT1G50420.1 | 34.694 | 147 | 88 | 5 | 318 | 460 | 339 | 481 | 4.03e-16 | 80.9 |
Msa1415950 | AT2G45160.1 | 25.731 | 342 | 222 | 12 | 137 | 459 | 312 | 640 | 6.40e-20 | 93.2 |
Msa1415950 | AT3G60630.1 | 26.797 | 306 | 195 | 10 | 173 | 459 | 328 | 623 | 1.24e-19 | 92.4 |
Msa1415950 | AT3G13840.1 | 24.541 | 436 | 273 | 16 | 57 | 457 | 95 | 509 | 1.46e-19 | 91.7 |
Msa1415950 | AT4G00150.1 | 27.666 | 347 | 217 | 15 | 129 | 462 | 233 | 558 | 4.30e-19 | 90.5 |
Msa1415950 | AT4G36710.1 | 23.059 | 425 | 290 | 13 | 60 | 457 | 70 | 484 | 2.28e-18 | 87.8 |
Find 82 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATAACCACTATTACTATTA+TGG | 0.175209 | tig0024289:-57534 | None:intergenic |
TACCCTATAGCATGTAAATT+TGG | 0.224828 | tig0024289:+58081 | Msa1415950:CDS |
TATTCTGTCCTCCCAAGTTT+AGG | 0.241115 | tig0024289:-57378 | None:intergenic |
TAGCATTCATATCATTGATT+TGG | 0.267686 | tig0024289:+57888 | Msa1415950:CDS |
ATGATCCAAGTGAATCAAAA+AGG | 0.269992 | tig0024289:-58323 | None:intergenic |
TTTGAGACTTCTTGAAGAAT+TGG | 0.271799 | tig0024289:+58209 | Msa1415950:CDS |
GTTGGACTTGTAGAACTTCT+AGG | 0.281331 | tig0024289:+58643 | Msa1415950:CDS |
ATTCTGTCCTCCCAAGTTTA+GGG | 0.294515 | tig0024289:-57377 | None:intergenic |
ATGTTTCCATGTTACAAATT+AGG | 0.299869 | tig0024289:+58115 | Msa1415950:CDS |
CCACTGCACATTCCATTAGA+AGG | 0.301310 | tig0024289:-57585 | None:intergenic |
GAATTTGATAACCCTTCTAA+TGG | 0.332684 | tig0024289:+57573 | Msa1415950:CDS |
TCACCAAATTTACATGCTAT+AGG | 0.333976 | tig0024289:-58084 | None:intergenic |
CACCAAATTTACATGCTATA+GGG | 0.337950 | tig0024289:-58083 | None:intergenic |
GTGAAGAAAAGTTTAGGCTT+TGG | 0.358361 | tig0024289:+58445 | Msa1415950:CDS |
GCCATTGAATTAGCACTCAT+TGG | 0.370427 | tig0024289:-58507 | None:intergenic |
GTTTGTATACTGCTTCTTGT+TGG | 0.371179 | tig0024289:+58625 | Msa1415950:CDS |
ATGAGACACTTGCAGTTCAT+TGG | 0.379453 | tig0024289:+58142 | Msa1415950:CDS |
TATAGTCTTGCTCAAGTTGA+TGG | 0.384763 | tig0024289:+58573 | Msa1415950:CDS |
TGCATAGTGATGATTCTAAC+AGG | 0.385974 | tig0024289:+58349 | Msa1415950:CDS |
CATTCTTTGTATGATTCAAC+TGG | 0.386760 | tig0024289:+58171 | Msa1415950:CDS |
CTCAAGTTGATGGCATGTTA+AGG | 0.419170 | tig0024289:+58583 | Msa1415950:CDS |
TAAGGATTTGTTTGGATTGG+AGG | 0.422635 | tig0024289:-57328 | None:intergenic |
GGATAAGGATTTGTTTGGAT+TGG | 0.427644 | tig0024289:-57331 | None:intergenic |
CAAAACCATAATAGTAATAG+TGG | 0.439685 | tig0024289:+57529 | Msa1415950:CDS |
AATGTGAAAATTTGATGAAA+GGG | 0.441329 | tig0024289:-57822 | None:intergenic |
ATCAACAATATATTAGCAAT+TGG | 0.455848 | tig0024289:+58405 | Msa1415950:CDS |
AGAAAATCACTCCCTAAACT+TGG | 0.459534 | tig0024289:+57366 | Msa1415950:CDS |
GAAGTGGTGAAGAAAAGTTT+AGG | 0.462022 | tig0024289:+58439 | Msa1415950:CDS |
GCAATTTCAGTTGAAAATCA+TGG | 0.462156 | tig0024289:+57607 | Msa1415950:CDS |
ATGATTCAACTGGACCTGAT+TGG | 0.462834 | tig0024289:+58181 | Msa1415950:CDS |
AGAATAATGAGGTAAGTGAT+TGG | 0.466181 | tig0024289:+57395 | Msa1415950:CDS |
AATGCTATTACAACGGTTCA+CGG | 0.473963 | tig0024289:-57872 | None:intergenic |
CGGCCTTCAGTTCGAATGAC+CGG | 0.476526 | tig0024289:+57973 | Msa1415950:CDS |
AGTGGTTATGAATGTGATCA+AGG | 0.478735 | tig0024289:+57547 | Msa1415950:CDS |
ATGGAACTTCTTGTTGAGAC+GGG | 0.483246 | tig0024289:+58009 | Msa1415950:CDS |
GACCGGGATGGGAGCATCGA+TGG | 0.487077 | tig0024289:+57990 | Msa1415950:CDS |
ATATCATGCAAGGGCTTCAA+TGG | 0.488838 | tig0024289:+57911 | Msa1415950:CDS |
ATGGCATGTTAAGGCTTGGT+TGG | 0.496635 | tig0024289:+58592 | Msa1415950:CDS |
TCACGGCTTCGAGAATTGCT+TGG | 0.498738 | tig0024289:-57855 | None:intergenic |
GAATAATGAGGTAAGTGATT+GGG | 0.499261 | tig0024289:+57396 | Msa1415950:CDS |
GGATTTGTTTGGATTGGAGG+TGG | 0.513635 | tig0024289:-57325 | None:intergenic |
TCACATACTCGCGACTCGAA+TGG | 0.516098 | tig0024289:+57945 | Msa1415950:CDS |
TCCAATGAGTGCTAATTCAA+TGG | 0.516236 | tig0024289:+58506 | Msa1415950:CDS |
GTAGAACAAGATGTTAACAT+TGG | 0.523714 | tig0024289:+58252 | Msa1415950:CDS |
TGAACTGCAAGTGTCTCATT+AGG | 0.524179 | tig0024289:-58138 | None:intergenic |
AACAATATATTAGCAATTGG+TGG | 0.529310 | tig0024289:+58408 | Msa1415950:CDS |
TCAGTTCGAATGACCGGGAT+GGG | 0.530352 | tig0024289:+57979 | Msa1415950:CDS |
CACTGCACATTCCATTAGAA+GGG | 0.530702 | tig0024289:-57584 | None:intergenic |
GAACAAGATGTTAACATTGG+AGG | 0.531900 | tig0024289:+58255 | Msa1415950:CDS |
CATACTCGCGACTCGAATGG+AGG | 0.534467 | tig0024289:+57948 | Msa1415950:CDS |
ATCCCGGTCATTCGAACTGA+AGG | 0.539893 | tig0024289:-57976 | None:intergenic |
ATTGATTTGGATATCATGCA+AGG | 0.540452 | tig0024289:+57901 | Msa1415950:CDS |
AGAGTGATGAATACATGGCT+TGG | 0.543301 | tig0024289:+57733 | Msa1415950:CDS |
TTCCATCGATGCTCCCATCC+CGG | 0.545444 | tig0024289:-57992 | None:intergenic |
AACATGTATTCACCAGCTCA+TGG | 0.559958 | tig0024289:+58549 | Msa1415950:CDS |
TGATATGAATGCTATTACAA+CGG | 0.565293 | tig0024289:-57879 | None:intergenic |
AACAAGATGTTAACATTGGA+GGG | 0.567098 | tig0024289:+58256 | Msa1415950:CDS |
CACTTGTAGAGAAGAATGAA+TGG | 0.567099 | tig0024289:-57785 | None:intergenic |
AAATGTGAAAATTTGATGAA+AGG | 0.571299 | tig0024289:-57823 | None:intergenic |
GATGGAACTTCTTGTTGAGA+CGG | 0.571703 | tig0024289:+58008 | Msa1415950:CDS |
ATTAGGCCTAATTTGTAACA+TGG | 0.571929 | tig0024289:-58121 | None:intergenic |
ATTCACACATGCATGAAACA+TGG | 0.572802 | tig0024289:+57269 | None:intergenic |
AATGCAATGAACCAACAAAA+CGG | 0.577957 | tig0024289:-58290 | None:intergenic |
GGCCTTCAGTTCGAATGACC+GGG | 0.584830 | tig0024289:+57974 | Msa1415950:CDS |
AACAGGAACATTGTTGAACA+TGG | 0.588599 | tig0024289:+58366 | Msa1415950:CDS |
TTCAGTTGAAAATCATGGTG+AGG | 0.588959 | tig0024289:+57612 | Msa1415950:CDS |
ATGTGAAAATTTGATGAAAG+GGG | 0.589901 | tig0024289:-57821 | None:intergenic |
TTGATTTGGATATCATGCAA+GGG | 0.592147 | tig0024289:+57902 | Msa1415950:CDS |
TTCACACATGCATGAAACAT+GGG | 0.594579 | tig0024289:+57270 | None:intergenic |
TTCAGTTCGAATGACCGGGA+TGG | 0.594862 | tig0024289:+57978 | Msa1415950:CDS |
GTTGATGGCATGTTAAGGCT+TGG | 0.599004 | tig0024289:+58588 | Msa1415950:CDS |
GAAAATCACTCCCTAAACTT+GGG | 0.607746 | tig0024289:+57367 | Msa1415950:CDS |
TTAGTAGAGTGATGAATACA+TGG | 0.620787 | tig0024289:+57728 | Msa1415950:CDS |
ATGGTTCTATGATCAATCAA+AGG | 0.621623 | tig0024289:-57766 | None:intergenic |
GCAAGACTATAACCATGAGC+TGG | 0.626630 | tig0024289:-58561 | None:intergenic |
ATTGGTGGACCTAAGAGAAG+TGG | 0.635188 | tig0024289:+58423 | Msa1415950:CDS |
CTTGGGAGGACAGAATAATG+AGG | 0.638605 | tig0024289:+57384 | Msa1415950:CDS |
CCTTCTAATGGAATGTGCAG+TGG | 0.643323 | tig0024289:+57585 | Msa1415950:CDS |
AATCACTCCCTAAACTTGGG+AGG | 0.649390 | tig0024289:+57370 | Msa1415950:CDS |
TGGAACTTCTTGTTGAGACG+GGG | 0.658302 | tig0024289:+58010 | Msa1415950:CDS |
GTGGTTATGAATGTGATCAA+GGG | 0.672291 | tig0024289:+57548 | Msa1415950:CDS |
TCGCGACTCGAATGGAGGGT+CGG | 0.673281 | tig0024289:+57953 | Msa1415950:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGTGAAAATTTGATGAAA+GGG | - | tig0024289:57825-57844 | None:intergenic | 20.0% |
!! | AAATGTGAAAATTTGATGAA+AGG | - | tig0024289:57826-57845 | None:intergenic | 20.0% |
!! | ATCAACAATATATTAGCAAT+TGG | + | tig0024289:58405-58424 | Msa1415950:CDS | 20.0% |
!! | AATGTGAAAATTTGATGAAA+GGG | - | tig0024289:57825-57844 | None:intergenic | 20.0% |
!! | AAATGTGAAAATTTGATGAA+AGG | - | tig0024289:57826-57845 | None:intergenic | 20.0% |
!! | ATCAACAATATATTAGCAAT+TGG | + | tig0024289:58405-58424 | Msa1415950:CDS | 20.0% |
!!! | TTATTATCAGAAGTGTTTTG+TGG | - | tig0024289:57460-57479 | None:intergenic | 25.0% |
!!! | ATGGTTTTGAATTAAATCTG+AGG | - | tig0024289:57518-57537 | None:intergenic | 25.0% |
! | CAAAACCATAATAGTAATAG+TGG | + | tig0024289:57529-57548 | Msa1415950:CDS | 25.0% |
! | CATAACCACTATTACTATTA+TGG | - | tig0024289:57537-57556 | None:intergenic | 25.0% |
! | ATGTGAAAATTTGATGAAAG+GGG | - | tig0024289:57824-57843 | None:intergenic | 25.0% |
! | TGATATGAATGCTATTACAA+CGG | - | tig0024289:57882-57901 | None:intergenic | 25.0% |
!! | TAGCATTCATATCATTGATT+TGG | + | tig0024289:57888-57907 | Msa1415950:CDS | 25.0% |
! | ATGTTTCCATGTTACAAATT+AGG | + | tig0024289:58115-58134 | Msa1415950:CDS | 25.0% |
!! | TCTACCAAAGTTATGATTTT+TGG | - | tig0024289:58237-58256 | None:intergenic | 25.0% |
! | AACAATATATTAGCAATTGG+TGG | + | tig0024289:58408-58427 | Msa1415950:CDS | 25.0% |
!!! | TTATTATCAGAAGTGTTTTG+TGG | - | tig0024289:57460-57479 | None:intergenic | 25.0% |
!!! | ATGGTTTTGAATTAAATCTG+AGG | - | tig0024289:57518-57537 | None:intergenic | 25.0% |
! | CAAAACCATAATAGTAATAG+TGG | + | tig0024289:57529-57548 | Msa1415950:CDS | 25.0% |
! | CATAACCACTATTACTATTA+TGG | - | tig0024289:57537-57556 | None:intergenic | 25.0% |
! | ATGTGAAAATTTGATGAAAG+GGG | - | tig0024289:57824-57843 | None:intergenic | 25.0% |
! | TGATATGAATGCTATTACAA+CGG | - | tig0024289:57882-57901 | None:intergenic | 25.0% |
!! | TAGCATTCATATCATTGATT+TGG | + | tig0024289:57888-57907 | Msa1415950:CDS | 25.0% |
! | ATGTTTCCATGTTACAAATT+AGG | + | tig0024289:58115-58134 | Msa1415950:CDS | 25.0% |
!! | TCTACCAAAGTTATGATTTT+TGG | - | tig0024289:58237-58256 | None:intergenic | 25.0% |
! | AACAATATATTAGCAATTGG+TGG | + | tig0024289:58408-58427 | Msa1415950:CDS | 25.0% |
!! | GTTTTGGATAAGGATTTGTT+TGG | - | tig0024289:57339-57358 | None:intergenic | 30.0% |
AGAATAATGAGGTAAGTGAT+TGG | + | tig0024289:57395-57414 | Msa1415950:CDS | 30.0% | |
GAATAATGAGGTAAGTGATT+GGG | + | tig0024289:57396-57415 | Msa1415950:CDS | 30.0% | |
! | GAATTTGATAACCCTTCTAA+TGG | + | tig0024289:57573-57592 | Msa1415950:CDS | 30.0% |
GCAATTTCAGTTGAAAATCA+TGG | + | tig0024289:57607-57626 | Msa1415950:CDS | 30.0% | |
TTAGTAGAGTGATGAATACA+TGG | + | tig0024289:57728-57747 | Msa1415950:CDS | 30.0% | |
! | ATGGTTCTATGATCAATCAA+AGG | - | tig0024289:57769-57788 | None:intergenic | 30.0% |
!! | ATTGATTTGGATATCATGCA+AGG | + | tig0024289:57901-57920 | Msa1415950:CDS | 30.0% |
!! | TTGATTTGGATATCATGCAA+GGG | + | tig0024289:57902-57921 | Msa1415950:CDS | 30.0% |
! | ATCTTTCGAATTTTGCAAGA+AGG | + | tig0024289:58037-58056 | Msa1415950:CDS | 30.0% |
TACCCTATAGCATGTAAATT+TGG | + | tig0024289:58081-58100 | Msa1415950:CDS | 30.0% | |
CACCAAATTTACATGCTATA+GGG | - | tig0024289:58086-58105 | None:intergenic | 30.0% | |
TCACCAAATTTACATGCTAT+AGG | - | tig0024289:58087-58106 | None:intergenic | 30.0% | |
! | ATTAGGCCTAATTTGTAACA+TGG | - | tig0024289:58124-58143 | None:intergenic | 30.0% |
CATTCTTTGTATGATTCAAC+TGG | + | tig0024289:58171-58190 | Msa1415950:CDS | 30.0% | |
! | TTTGAGACTTCTTGAAGAAT+TGG | + | tig0024289:58209-58228 | Msa1415950:CDS | 30.0% |
GGAACCAAAAATCATAACTT+TGG | + | tig0024289:58230-58249 | Msa1415950:CDS | 30.0% | |
GTAGAACAAGATGTTAACAT+TGG | + | tig0024289:58252-58271 | Msa1415950:CDS | 30.0% | |
AACAAGATGTTAACATTGGA+GGG | + | tig0024289:58256-58275 | Msa1415950:CDS | 30.0% | |
AATGCAATGAACCAACAAAA+CGG | - | tig0024289:58293-58312 | None:intergenic | 30.0% | |
TGATCCAAGTGAATCAAAAA+GGG | - | tig0024289:58325-58344 | None:intergenic | 30.0% | |
ATGATCCAAGTGAATCAAAA+AGG | - | tig0024289:58326-58345 | None:intergenic | 30.0% | |
!! | GTTTTGGATAAGGATTTGTT+TGG | - | tig0024289:57339-57358 | None:intergenic | 30.0% |
AGAATAATGAGGTAAGTGAT+TGG | + | tig0024289:57395-57414 | Msa1415950:CDS | 30.0% | |
GAATAATGAGGTAAGTGATT+GGG | + | tig0024289:57396-57415 | Msa1415950:CDS | 30.0% | |
! | GAATTTGATAACCCTTCTAA+TGG | + | tig0024289:57573-57592 | Msa1415950:CDS | 30.0% |
GCAATTTCAGTTGAAAATCA+TGG | + | tig0024289:57607-57626 | Msa1415950:CDS | 30.0% | |
TTAGTAGAGTGATGAATACA+TGG | + | tig0024289:57728-57747 | Msa1415950:CDS | 30.0% | |
! | ATGGTTCTATGATCAATCAA+AGG | - | tig0024289:57769-57788 | None:intergenic | 30.0% |
!! | ATTGATTTGGATATCATGCA+AGG | + | tig0024289:57901-57920 | Msa1415950:CDS | 30.0% |
!! | TTGATTTGGATATCATGCAA+GGG | + | tig0024289:57902-57921 | Msa1415950:CDS | 30.0% |
! | ATCTTTCGAATTTTGCAAGA+AGG | + | tig0024289:58037-58056 | Msa1415950:CDS | 30.0% |
TACCCTATAGCATGTAAATT+TGG | + | tig0024289:58081-58100 | Msa1415950:CDS | 30.0% | |
CACCAAATTTACATGCTATA+GGG | - | tig0024289:58086-58105 | None:intergenic | 30.0% | |
TCACCAAATTTACATGCTAT+AGG | - | tig0024289:58087-58106 | None:intergenic | 30.0% | |
! | ATTAGGCCTAATTTGTAACA+TGG | - | tig0024289:58124-58143 | None:intergenic | 30.0% |
CATTCTTTGTATGATTCAAC+TGG | + | tig0024289:58171-58190 | Msa1415950:CDS | 30.0% | |
! | TTTGAGACTTCTTGAAGAAT+TGG | + | tig0024289:58209-58228 | Msa1415950:CDS | 30.0% |
GGAACCAAAAATCATAACTT+TGG | + | tig0024289:58230-58249 | Msa1415950:CDS | 30.0% | |
GTAGAACAAGATGTTAACAT+TGG | + | tig0024289:58252-58271 | Msa1415950:CDS | 30.0% | |
AACAAGATGTTAACATTGGA+GGG | + | tig0024289:58256-58275 | Msa1415950:CDS | 30.0% | |
AATGCAATGAACCAACAAAA+CGG | - | tig0024289:58293-58312 | None:intergenic | 30.0% | |
TGATCCAAGTGAATCAAAAA+GGG | - | tig0024289:58325-58344 | None:intergenic | 30.0% | |
ATGATCCAAGTGAATCAAAA+AGG | - | tig0024289:58326-58345 | None:intergenic | 30.0% | |
! | TAAGGATTTGTTTGGATTGG+AGG | - | tig0024289:57331-57350 | None:intergenic | 35.0% |
! | GGATAAGGATTTGTTTGGAT+TGG | - | tig0024289:57334-57353 | None:intergenic | 35.0% |
!!! | TGATTTTCTGTTGGTGGTTT+TGG | - | tig0024289:57355-57374 | None:intergenic | 35.0% |
! | TTTAGGGAGTGATTTTCTGT+TGG | - | tig0024289:57364-57383 | None:intergenic | 35.0% |
AGAAAATCACTCCCTAAACT+TGG | + | tig0024289:57366-57385 | Msa1415950:CDS | 35.0% | |
GAAAATCACTCCCTAAACTT+GGG | + | tig0024289:57367-57386 | Msa1415950:CDS | 35.0% | |
AGTGGTTATGAATGTGATCA+AGG | + | tig0024289:57547-57566 | Msa1415950:CDS | 35.0% | |
GTGGTTATGAATGTGATCAA+GGG | + | tig0024289:57548-57567 | Msa1415950:CDS | 35.0% | |
TTCAGTTGAAAATCATGGTG+AGG | + | tig0024289:57612-57631 | Msa1415950:CDS | 35.0% | |
!! | TCAGCACTTGAAGTTTTGTA+AGG | - | tig0024289:57676-57695 | None:intergenic | 35.0% |
CACTTGTAGAGAAGAATGAA+TGG | - | tig0024289:57788-57807 | None:intergenic | 35.0% | |
AATGCTATTACAACGGTTCA+CGG | - | tig0024289:57875-57894 | None:intergenic | 35.0% | |
! | AGTCTCAAAGTTTTCCAATC+AGG | - | tig0024289:58198-58217 | None:intergenic | 35.0% |
GAACAAGATGTTAACATTGG+AGG | + | tig0024289:58255-58274 | Msa1415950:CDS | 35.0% | |
!! | TAACATTGGAGGGTCATTTT+TGG | + | tig0024289:58266-58285 | Msa1415950:CDS | 35.0% |
!! | TCATTTTTGGACCGTTTTGT+TGG | + | tig0024289:58279-58298 | Msa1415950:CDS | 35.0% |
TGCATAGTGATGATTCTAAC+AGG | + | tig0024289:58349-58368 | Msa1415950:CDS | 35.0% | |
AACAGGAACATTGTTGAACA+TGG | + | tig0024289:58366-58385 | Msa1415950:CDS | 35.0% | |
! | TTTTCTTCACCACTTCTCTT+AGG | - | tig0024289:58435-58454 | None:intergenic | 35.0% |
GAAGTGGTGAAGAAAAGTTT+AGG | + | tig0024289:58439-58458 | Msa1415950:CDS | 35.0% | |
GTGAAGAAAAGTTTAGGCTT+TGG | + | tig0024289:58445-58464 | Msa1415950:CDS | 35.0% | |
!!! | TGCAAGAAATAGTTTTGAGC+AGG | + | tig0024289:58482-58501 | Msa1415950:CDS | 35.0% |
TCCAATGAGTGCTAATTCAA+TGG | + | tig0024289:58506-58525 | Msa1415950:CDS | 35.0% | |
!! | TATAGTCTTGCTCAAGTTGA+TGG | + | tig0024289:58573-58592 | Msa1415950:CDS | 35.0% |
GTTTGTATACTGCTTCTTGT+TGG | + | tig0024289:58625-58644 | Msa1415950:CDS | 35.0% | |
! | TAAGGATTTGTTTGGATTGG+AGG | - | tig0024289:57331-57350 | None:intergenic | 35.0% |
! | GGATAAGGATTTGTTTGGAT+TGG | - | tig0024289:57334-57353 | None:intergenic | 35.0% |
!!! | TGATTTTCTGTTGGTGGTTT+TGG | - | tig0024289:57355-57374 | None:intergenic | 35.0% |
! | TTTAGGGAGTGATTTTCTGT+TGG | - | tig0024289:57364-57383 | None:intergenic | 35.0% |
AGAAAATCACTCCCTAAACT+TGG | + | tig0024289:57366-57385 | Msa1415950:CDS | 35.0% | |
GAAAATCACTCCCTAAACTT+GGG | + | tig0024289:57367-57386 | Msa1415950:CDS | 35.0% | |
AGTGGTTATGAATGTGATCA+AGG | + | tig0024289:57547-57566 | Msa1415950:CDS | 35.0% | |
GTGGTTATGAATGTGATCAA+GGG | + | tig0024289:57548-57567 | Msa1415950:CDS | 35.0% | |
TTCAGTTGAAAATCATGGTG+AGG | + | tig0024289:57612-57631 | Msa1415950:CDS | 35.0% | |
!! | TCAGCACTTGAAGTTTTGTA+AGG | - | tig0024289:57676-57695 | None:intergenic | 35.0% |
CACTTGTAGAGAAGAATGAA+TGG | - | tig0024289:57788-57807 | None:intergenic | 35.0% | |
AATGCTATTACAACGGTTCA+CGG | - | tig0024289:57875-57894 | None:intergenic | 35.0% | |
! | AGTCTCAAAGTTTTCCAATC+AGG | - | tig0024289:58198-58217 | None:intergenic | 35.0% |
GAACAAGATGTTAACATTGG+AGG | + | tig0024289:58255-58274 | Msa1415950:CDS | 35.0% | |
!! | TAACATTGGAGGGTCATTTT+TGG | + | tig0024289:58266-58285 | Msa1415950:CDS | 35.0% |
!! | TCATTTTTGGACCGTTTTGT+TGG | + | tig0024289:58279-58298 | Msa1415950:CDS | 35.0% |
TGCATAGTGATGATTCTAAC+AGG | + | tig0024289:58349-58368 | Msa1415950:CDS | 35.0% | |
AACAGGAACATTGTTGAACA+TGG | + | tig0024289:58366-58385 | Msa1415950:CDS | 35.0% | |
! | TTTTCTTCACCACTTCTCTT+AGG | - | tig0024289:58435-58454 | None:intergenic | 35.0% |
GAAGTGGTGAAGAAAAGTTT+AGG | + | tig0024289:58439-58458 | Msa1415950:CDS | 35.0% | |
GTGAAGAAAAGTTTAGGCTT+TGG | + | tig0024289:58445-58464 | Msa1415950:CDS | 35.0% | |
!!! | TGCAAGAAATAGTTTTGAGC+AGG | + | tig0024289:58482-58501 | Msa1415950:CDS | 35.0% |
TCCAATGAGTGCTAATTCAA+TGG | + | tig0024289:58506-58525 | Msa1415950:CDS | 35.0% | |
!! | TATAGTCTTGCTCAAGTTGA+TGG | + | tig0024289:58573-58592 | Msa1415950:CDS | 35.0% |
GTTTGTATACTGCTTCTTGT+TGG | + | tig0024289:58625-58644 | Msa1415950:CDS | 35.0% | |
!!! | TCTGTTGGTGGTTTTGGATA+AGG | - | tig0024289:57349-57368 | None:intergenic | 40.0% |
ATTCTGTCCTCCCAAGTTTA+GGG | - | tig0024289:57380-57399 | None:intergenic | 40.0% | |
TATTCTGTCCTCCCAAGTTT+AGG | - | tig0024289:57381-57400 | None:intergenic | 40.0% | |
CACTGCACATTCCATTAGAA+GGG | - | tig0024289:57587-57606 | None:intergenic | 40.0% | |
AGAGTGATGAATACATGGCT+TGG | + | tig0024289:57733-57752 | Msa1415950:CDS | 40.0% | |
ATATCATGCAAGGGCTTCAA+TGG | + | tig0024289:57911-57930 | Msa1415950:CDS | 40.0% | |
GCGAGTATGTGAAAAAAAGC+AGG | - | tig0024289:57937-57956 | None:intergenic | 40.0% | |
GATGGAACTTCTTGTTGAGA+CGG | + | tig0024289:58008-58027 | Msa1415950:CDS | 40.0% | |
ATGGAACTTCTTGTTGAGAC+GGG | + | tig0024289:58009-58028 | Msa1415950:CDS | 40.0% | |
! | TCGAATTTTGCAAGAAGGCT+CGG | + | tig0024289:58042-58061 | Msa1415950:CDS | 40.0% |
TGAACTGCAAGTGTCTCATT+AGG | - | tig0024289:58141-58160 | None:intergenic | 40.0% | |
ATGAGACACTTGCAGTTCAT+TGG | + | tig0024289:58142-58161 | Msa1415950:CDS | 40.0% | |
ATGATTCAACTGGACCTGAT+TGG | + | tig0024289:58181-58200 | Msa1415950:CDS | 40.0% | |
!! | TCCACCCTTTTTGATTCACT+TGG | + | tig0024289:58318-58337 | Msa1415950:CDS | 40.0% |
TCCAAGTGAATCAAAAAGGG+TGG | - | tig0024289:58322-58341 | None:intergenic | 40.0% | |
GCCATTGAATTAGCACTCAT+TGG | - | tig0024289:58510-58529 | None:intergenic | 40.0% | |
AACATGTATTCACCAGCTCA+TGG | + | tig0024289:58549-58568 | Msa1415950:CDS | 40.0% | |
!! | CTCAAGTTGATGGCATGTTA+AGG | + | tig0024289:58583-58602 | Msa1415950:CDS | 40.0% |
GTTGGACTTGTAGAACTTCT+AGG | + | tig0024289:58643-58662 | Msa1415950:CDS | 40.0% | |
!!! | TCTGTTGGTGGTTTTGGATA+AGG | - | tig0024289:57349-57368 | None:intergenic | 40.0% |
ATTCTGTCCTCCCAAGTTTA+GGG | - | tig0024289:57380-57399 | None:intergenic | 40.0% | |
TATTCTGTCCTCCCAAGTTT+AGG | - | tig0024289:57381-57400 | None:intergenic | 40.0% | |
CACTGCACATTCCATTAGAA+GGG | - | tig0024289:57587-57606 | None:intergenic | 40.0% | |
AGAGTGATGAATACATGGCT+TGG | + | tig0024289:57733-57752 | Msa1415950:CDS | 40.0% | |
ATATCATGCAAGGGCTTCAA+TGG | + | tig0024289:57911-57930 | Msa1415950:CDS | 40.0% | |
GCGAGTATGTGAAAAAAAGC+AGG | - | tig0024289:57937-57956 | None:intergenic | 40.0% | |
GATGGAACTTCTTGTTGAGA+CGG | + | tig0024289:58008-58027 | Msa1415950:CDS | 40.0% | |
ATGGAACTTCTTGTTGAGAC+GGG | + | tig0024289:58009-58028 | Msa1415950:CDS | 40.0% | |
! | TCGAATTTTGCAAGAAGGCT+CGG | + | tig0024289:58042-58061 | Msa1415950:CDS | 40.0% |
TGAACTGCAAGTGTCTCATT+AGG | - | tig0024289:58141-58160 | None:intergenic | 40.0% | |
ATGAGACACTTGCAGTTCAT+TGG | + | tig0024289:58142-58161 | Msa1415950:CDS | 40.0% | |
ATGATTCAACTGGACCTGAT+TGG | + | tig0024289:58181-58200 | Msa1415950:CDS | 40.0% | |
!! | TCCACCCTTTTTGATTCACT+TGG | + | tig0024289:58318-58337 | Msa1415950:CDS | 40.0% |
TCCAAGTGAATCAAAAAGGG+TGG | - | tig0024289:58322-58341 | None:intergenic | 40.0% | |
GCCATTGAATTAGCACTCAT+TGG | - | tig0024289:58510-58529 | None:intergenic | 40.0% | |
AACATGTATTCACCAGCTCA+TGG | + | tig0024289:58549-58568 | Msa1415950:CDS | 40.0% | |
!! | CTCAAGTTGATGGCATGTTA+AGG | + | tig0024289:58583-58602 | Msa1415950:CDS | 40.0% |
GTTGGACTTGTAGAACTTCT+AGG | + | tig0024289:58643-58662 | Msa1415950:CDS | 40.0% | |
! | GGATTTGTTTGGATTGGAGG+TGG | - | tig0024289:57328-57347 | None:intergenic | 45.0% |
! | AGGGAGTGATTTTCTGTTGG+TGG | - | tig0024289:57361-57380 | None:intergenic | 45.0% |
AATCACTCCCTAAACTTGGG+AGG | + | tig0024289:57370-57389 | Msa1415950:CDS | 45.0% | |
CTTGGGAGGACAGAATAATG+AGG | + | tig0024289:57384-57403 | Msa1415950:CDS | 45.0% | |
CCACTGCACATTCCATTAGA+AGG | - | tig0024289:57588-57607 | None:intergenic | 45.0% | |
CCTTCTAATGGAATGTGCAG+TGG | + | tig0024289:57585-57604 | Msa1415950:CDS | 45.0% | |
TGGAACTTCTTGTTGAGACG+GGG | + | tig0024289:58010-58029 | Msa1415950:CDS | 45.0% | |
! | ATTGGTGGACCTAAGAGAAG+TGG | + | tig0024289:58423-58442 | Msa1415950:CDS | 45.0% |
GCAAGACTATAACCATGAGC+TGG | - | tig0024289:58564-58583 | None:intergenic | 45.0% | |
!! | GTTGATGGCATGTTAAGGCT+TGG | + | tig0024289:58588-58607 | Msa1415950:CDS | 45.0% |
! | ATGGCATGTTAAGGCTTGGT+TGG | + | tig0024289:58592-58611 | Msa1415950:CDS | 45.0% |
! | GGATTTGTTTGGATTGGAGG+TGG | - | tig0024289:57328-57347 | None:intergenic | 45.0% |
! | AGGGAGTGATTTTCTGTTGG+TGG | - | tig0024289:57361-57380 | None:intergenic | 45.0% |
AATCACTCCCTAAACTTGGG+AGG | + | tig0024289:57370-57389 | Msa1415950:CDS | 45.0% | |
CTTGGGAGGACAGAATAATG+AGG | + | tig0024289:57384-57403 | Msa1415950:CDS | 45.0% | |
CCACTGCACATTCCATTAGA+AGG | - | tig0024289:57588-57607 | None:intergenic | 45.0% | |
CCTTCTAATGGAATGTGCAG+TGG | + | tig0024289:57585-57604 | Msa1415950:CDS | 45.0% | |
TGGAACTTCTTGTTGAGACG+GGG | + | tig0024289:58010-58029 | Msa1415950:CDS | 45.0% | |
! | ATTGGTGGACCTAAGAGAAG+TGG | + | tig0024289:58423-58442 | Msa1415950:CDS | 45.0% |
GCAAGACTATAACCATGAGC+TGG | - | tig0024289:58564-58583 | None:intergenic | 45.0% | |
!! | GTTGATGGCATGTTAAGGCT+TGG | + | tig0024289:58588-58607 | Msa1415950:CDS | 45.0% |
! | ATGGCATGTTAAGGCTTGGT+TGG | + | tig0024289:58592-58611 | Msa1415950:CDS | 45.0% |
TCACGGCTTCGAGAATTGCT+TGG | - | tig0024289:57858-57877 | None:intergenic | 50.0% | |
TCACATACTCGCGACTCGAA+TGG | + | tig0024289:57945-57964 | Msa1415950:CDS | 50.0% | |
ATACTCGCGACTCGAATGGA+GGG | + | tig0024289:57949-57968 | Msa1415950:CDS | 50.0% | |
ATCCCGGTCATTCGAACTGA+AGG | - | tig0024289:57979-57998 | None:intergenic | 50.0% | |
TTCAGTTCGAATGACCGGGA+TGG | + | tig0024289:57978-57997 | Msa1415950:CDS | 50.0% | |
TCAGTTCGAATGACCGGGAT+GGG | + | tig0024289:57979-57998 | Msa1415950:CDS | 50.0% | |
TCACGGCTTCGAGAATTGCT+TGG | - | tig0024289:57858-57877 | None:intergenic | 50.0% | |
TCACATACTCGCGACTCGAA+TGG | + | tig0024289:57945-57964 | Msa1415950:CDS | 50.0% | |
ATACTCGCGACTCGAATGGA+GGG | + | tig0024289:57949-57968 | Msa1415950:CDS | 50.0% | |
ATCCCGGTCATTCGAACTGA+AGG | - | tig0024289:57979-57998 | None:intergenic | 50.0% | |
TTCAGTTCGAATGACCGGGA+TGG | + | tig0024289:57978-57997 | Msa1415950:CDS | 50.0% | |
TCAGTTCGAATGACCGGGAT+GGG | + | tig0024289:57979-57998 | Msa1415950:CDS | 50.0% | |
CATACTCGCGACTCGAATGG+AGG | + | tig0024289:57948-57967 | Msa1415950:CDS | 55.0% | |
CGGCCTTCAGTTCGAATGAC+CGG | + | tig0024289:57973-57992 | Msa1415950:CDS | 55.0% | |
GGCCTTCAGTTCGAATGACC+GGG | + | tig0024289:57974-57993 | Msa1415950:CDS | 55.0% | |
TTCCATCGATGCTCCCATCC+CGG | - | tig0024289:57995-58014 | None:intergenic | 55.0% | |
CATACTCGCGACTCGAATGG+AGG | + | tig0024289:57948-57967 | Msa1415950:CDS | 55.0% | |
CGGCCTTCAGTTCGAATGAC+CGG | + | tig0024289:57973-57992 | Msa1415950:CDS | 55.0% | |
GGCCTTCAGTTCGAATGACC+GGG | + | tig0024289:57974-57993 | Msa1415950:CDS | 55.0% | |
TTCCATCGATGCTCCCATCC+CGG | - | tig0024289:57995-58014 | None:intergenic | 55.0% | |
TCGCGACTCGAATGGAGGGT+CGG | + | tig0024289:57953-57972 | Msa1415950:CDS | 60.0% | |
TCGCGACTCGAATGGAGGGT+CGG | + | tig0024289:57953-57972 | Msa1415950:CDS | 60.0% | |
!! | GACCGGGATGGGAGCATCGA+TGG | + | tig0024289:57990-58009 | Msa1415950:CDS | 65.0% |
!! | GACCGGGATGGGAGCATCGA+TGG | + | tig0024289:57990-58009 | Msa1415950:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0024289 | gene | 57277 | 58668 | 57277 | ID=Msa1415950;Name=Msa1415950 |
tig0024289 | mRNA | 57277 | 58668 | 57277 | ID=Msa1415950-mRNA-1;Parent=Msa1415950;Name=Msa1415950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|463 |
tig0024289 | exon | 57277 | 58668 | 57277 | ID=Msa1415950-mRNA-1:exon:22644;Parent=Msa1415950-mRNA-1 |
tig0024289 | CDS | 57277 | 58668 | 57277 | ID=Msa1415950-mRNA-1:cds;Parent=Msa1415950-mRNA-1 |
Gene Sequence |
Protein sequence |